AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0804510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804510 MtrunA17_Chr3g0124891 61.935 155 25 1 75 195 6 160 2.23e-54 181
Msa0804510 MtrunA17_Chr6g0463041 60.305 131 10 2 252 340 119 249 6.10e-40 141
Msa0804510 MtrunA17_Chr6g0488081 55.862 145 20 3 238 340 173 315 3.95e-39 140
Msa0804510 MtrunA17_Chr6g0488341 59.542 131 11 2 252 340 110 240 3.01e-38 136
Msa0804510 MtrunA17_Chr4g0034401 87.500 56 7 0 89 144 17 72 3.08e-28 104
Msa0804510 MtrunA17_Chr6g0488171 65.432 81 6 1 282 340 31 111 4.55e-24 95.1
Msa0804510 MtrunA17_Chr1g0176961 82.143 56 10 0 1 56 109 164 2.20e-22 98.2
Msa0804510 MtrunA17_Chr8g0381591 85.714 56 8 0 200 255 435 490 3.93e-22 97.4
Msa0804510 MtrunA17_Chr3g0135861 31.183 186 76 5 199 334 149 332 4.61e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804510 AT1G21760.1 50.000 154 41 2 77 195 5 157 1.90e-41 147
Msa0804510 AT1G21760.2 50.000 154 41 2 77 195 5 157 2.18e-41 147
Msa0804510 AT4G26180.1 44.615 130 29 3 252 338 187 316 1.83e-22 96.7
Msa0804510 AT4G26180.2 46.341 82 23 2 252 312 187 268 1.40e-13 70.9
Msa0804510 AT1G67840.1 57.143 56 24 0 200 255 441 496 4.08e-11 64.7

Find 134 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTATTGTTGGTTATTT+TGG 0.092586 5_3:+20444053 Msa0804510:three_prime_UTR
CCAAAATAACCAACAATAAT+TGG 0.192533 5_3:-20444053 None:intergenic
TGGATCCGTGGCAGGTTTAT+TGG 0.237641 5_3:+20443243 Msa0804510:intron
TGCATCCCACTTACAATTCC+TGG 0.271669 5_3:+20439305 Msa0804510:CDS
CTGGTAAGCAACAGCGAAAA+AGG 0.295430 5_3:-20441362 None:intergenic
ACCACATGAATCTTGGTCTT+TGG 0.299524 5_3:-20439218 None:intergenic
TTGTGCGTGGGATTTGAGAA+TGG 0.310169 5_3:+20439069 Msa0804510:five_prime_UTR
TAGTCCACTTCATCTCTTGA+TGG 0.322453 5_3:-20443646 None:intergenic
GCCACAGCTCCGACACTCTT+TGG 0.326066 5_3:+20443121 Msa0804510:intron
AGCTACACATTGCATTCTTT+CGG 0.336658 5_3:+20443776 Msa0804510:three_prime_UTR
CTCCCACAGTCAAAGTTCTA+AGG 0.353932 5_3:+20439376 Msa0804510:CDS
GTTGAAGCTTGCGAGAAGTT+AGG 0.362172 5_3:-20443708 None:intergenic
GGATCCGTGGCAGGTTTATT+GGG 0.375605 5_3:+20443244 Msa0804510:intron
GTGATACCTGTTGTGCCATT+TGG 0.390693 5_3:+20441306 Msa0804510:CDS
AAGATTCATGTGGTTGGAAC+AGG 0.391696 5_3:+20439227 Msa0804510:CDS
CTGTCAACCATCCTCACATT+AGG 0.392867 5_3:+20443677 Msa0804510:three_prime_UTR
ACCAGATGAGCTGCTCTTTG+AGG 0.392938 5_3:+20441380 Msa0804510:CDS
ATACATGCATGGCTTTAGAT+TGG 0.394060 5_3:-20438700 None:intergenic
TTTACGATTGAAGGGTTTGA+TGG 0.397507 5_3:+20438997 Msa0804510:intron
ACCTCAAAGAGCAGCTCATC+TGG 0.404585 5_3:-20441381 None:intergenic
CTGAAAGCCTGGCGCAGAGC+AGG 0.408438 5_3:-20442945 None:intergenic
TATTACATTCCAATTATTGT+TGG 0.408812 5_3:+20444044 Msa0804510:three_prime_UTR
TGTGCGTGGGATTTGAGAAT+GGG 0.411615 5_3:+20439070 Msa0804510:five_prime_UTR
CACATCCTCTTGAAGCTGTC+AGG 0.413007 5_3:+20443276 Msa0804510:CDS
CGGCCAAGGTTGCGATTTGA+CGG 0.413839 5_3:+20442111 Msa0804510:CDS
AAATCAATGAGATCTGAATC+AGG 0.414416 5_3:-20443848 None:intergenic
GGCGGAAAATGTGGCTCTTA+CGG 0.415806 5_3:+20442091 Msa0804510:CDS
GAATCCAAGCCAAGCCTTCT+CGG 0.417175 5_3:+20439398 Msa0804510:CDS
ATGGCATGGGAGAGAGGAAC+TGG 0.422467 5_3:+20439016 Msa0804510:five_prime_UTR
CTCCACTATGACATGGAATC+AGG 0.425158 5_3:+20442516 Msa0804510:CDS
CTGTTAACTACTTTGTTACA+AGG 0.425322 5_3:+20441155 Msa0804510:CDS
AACCAAGTCTGCCAATACTT+TGG 0.432850 5_3:-20442835 None:intergenic
TGAATCAGGGTATTGTTTGT+TGG 0.433337 5_3:-20443834 None:intergenic
GGAGTAAAGCACCTTCAATA+AGG 0.437993 5_3:-20442971 None:intergenic
CGGATTGTAAATAGAGATAG+AGG 0.441475 5_3:+20443796 Msa0804510:three_prime_UTR
TTCCAAAGTATTGGCAGACT+TGG 0.442728 5_3:+20442833 Msa0804510:CDS
TGTTCCAACCACATGAATCT+TGG 0.443522 5_3:-20439225 None:intergenic
GCACTTCCAAATGGCACAAC+AGG 0.444249 5_3:-20441312 None:intergenic
TCTCATAGTCCCTTTCAATT+CGG 0.446254 5_3:-20443414 None:intergenic
TTTGAAATTCTACTTCTATG+AGG 0.450212 5_3:+20443162 Msa0804510:CDS
GGGAACGGAACGGGAAAGGG+AGG 0.450218 5_3:+20438598 None:intergenic
AGTTTCTATGTGGTTTAGAC+AGG 0.450454 5_3:+20443887 Msa0804510:three_prime_UTR
GCTTTCAGCAACCTTATTGA+AGG 0.452369 5_3:+20442960 Msa0804510:CDS
TAGAATTTCAAACCCGCGTA+TGG 0.453141 5_3:-20443151 None:intergenic
TTCAAGAGGATGTGAATGTC+TGG 0.457450 5_3:-20443267 None:intergenic
CAATAAGGTTGCTGAAAGCC+TGG 0.458375 5_3:-20442956 None:intergenic
GAATGTGCAAGTAGAGGTAA+TGG 0.463449 5_3:+20443952 Msa0804510:three_prime_UTR
CTCATTGATTTCATTAAAGT+AGG 0.464697 5_3:+20443860 Msa0804510:three_prime_UTR
TTTAACGGTCCCTTCTGAGT+TGG 0.465255 5_3:+20441111 Msa0804510:CDS
TTTCTACTTGCACTTCCAAA+TGG 0.473755 5_3:-20441321 None:intergenic
GTTGTTCCATCTGCGGCCAT+CGG 0.476567 5_3:+20443583 Msa0804510:CDS
TGAATATGGATTTGTGATGC+AGG 0.479997 5_3:+20439181 Msa0804510:exon
GGTCCCTTCTGAGTTGGAAT+CGG 0.480778 5_3:+20441117 Msa0804510:CDS
AATCAAAATACGACGGCTCA+TGG 0.483753 5_3:+20442070 Msa0804510:CDS
CTCACCGAGAAGGCTTGGCT+TGG 0.484203 5_3:-20439402 None:intergenic
GATTGAAGGGTTTGATGGCA+TGG 0.484898 5_3:+20439002 Msa0804510:intron
GCAGCTGTGACGGAGGAGAA+TGG 0.485725 5_3:-20438626 None:intergenic
CATACAGTGAGTGAAAGAAA+AGG 0.491496 5_3:-20439344 None:intergenic
AAAACTAGAAATTGATTGAA+GGG 0.497022 5_3:+20439045 Msa0804510:five_prime_UTR
AATAACTCACCGAGAAGGCT+TGG 0.501089 5_3:-20439407 None:intergenic
CATAGTGGAGTGAGAGCTAA+AGG 0.507786 5_3:-20442503 None:intergenic
CAAAACTAGAAATTGATTGA+AGG 0.509589 5_3:+20439044 Msa0804510:five_prime_UTR
TTCCTTAGAACTTTGACTGT+GGG 0.519804 5_3:-20439378 None:intergenic
CTGAAGAAGCCGAATTGAAA+GGG 0.520218 5_3:+20443405 Msa0804510:CDS
AGAAGAACCTGCTCTGCGCC+AGG 0.520287 5_3:+20442938 Msa0804510:CDS
TGATGCAGGGTTTGAATCAG+AGG 0.522005 5_3:+20439195 Msa0804510:exon
TGCATCTGTTGTTGATCAGA+AGG 0.522342 5_3:+20439271 Msa0804510:CDS
GAATAGAATGAGAAGAAGCC+AGG 0.522386 5_3:-20443730 None:intergenic
GTGAAGCCGATGGCCGCAGA+TGG 0.524826 5_3:-20443589 None:intergenic
AGTACCATCAAGAGATGAAG+TGG 0.531658 5_3:+20443642 Msa0804510:CDS
AGTAGGAAATAGTTTCTATG+TGG 0.533904 5_3:+20443877 Msa0804510:three_prime_UTR
AGCTGTCAGGAGGCAAATGC+AGG 0.545022 5_3:+20443289 Msa0804510:CDS
ACTTCTCGCAAGCTTCAACC+TGG 0.545161 5_3:+20443712 Msa0804510:three_prime_UTR
TCTGAAGAAGCCGAATTGAA+AGG 0.545458 5_3:+20443404 Msa0804510:CDS
CGGCTTCTTCAGATGCCGCA+AGG 0.546244 5_3:-20443394 None:intergenic
CATCTCTTGATGGTACTCTC+AGG 0.549092 5_3:-20443636 None:intergenic
ATTGAAGGGTTTGATGGCAT+GGG 0.550329 5_3:+20439003 Msa0804510:intron
ATACAGTGAGTGAAAGAAAA+GGG 0.550592 5_3:-20439343 None:intergenic
AAACCACCAGGAATTGTAAG+TGG 0.552594 5_3:-20439311 None:intergenic
AAATGTGGCTCTTACGGCCA+AGG 0.555691 5_3:+20442097 Msa0804510:CDS
GATAAACTGAATACAGTGAA+AGG 0.556971 5_3:-20444002 None:intergenic
AAGACCAAGATTCATGTGGT+TGG 0.557257 5_3:+20439221 Msa0804510:CDS
AATTCAGGTTGTTCCATCTG+CGG 0.558051 5_3:+20443576 Msa0804510:intron
TGCCTCCTGACAGCTTCAAG+AGG 0.559781 5_3:-20443281 None:intergenic
GTTACAAGGAGGCCATGGCT+TGG 0.560559 5_3:+20441169 Msa0804510:CDS
GTGAGAGCTAAAGGTGGAAG+GGG 0.561362 5_3:-20442494 None:intergenic
GAGTGAGAGCTAAAGGTGGA+AGG 0.561853 5_3:-20442496 None:intergenic
AGAATTTCAAACCCGCGTAT+GGG 0.562448 5_3:-20443150 None:intergenic
TTGATTGAAGGGGTTGTGCG+TGG 0.565163 5_3:+20439056 Msa0804510:five_prime_UTR
GCTTATTCCTAATGTGAGGA+TGG 0.565550 5_3:-20443684 None:intergenic
ACTTTGTTACAAGGAGGCCA+TGG 0.571990 5_3:+20441164 Msa0804510:CDS
TTTCGCCGCAGCTGTGACGG+AGG 0.572188 5_3:-20438633 None:intergenic
GGTTTGATGGCATGGGAGAG+AGG 0.572229 5_3:+20439010 Msa0804510:five_prime_UTR
ATTCCTTAGAACTTTGACTG+TGG 0.574892 5_3:-20439379 None:intergenic
GAAAGGGACTATGAGATCCA+TGG 0.576797 5_3:+20443421 Msa0804510:CDS
CTTTGGAATATTCCCATACG+CGG 0.582745 5_3:+20443138 Msa0804510:CDS
AAACTAGAAATTGATTGAAG+GGG 0.583879 5_3:+20439046 Msa0804510:five_prime_UTR
GAATATGGATTTGTGATGCA+GGG 0.587176 5_3:+20439182 Msa0804510:exon
TACCTGATTCCATGTCATAG+TGG 0.589976 5_3:-20442518 None:intergenic
ACGGCTCATGGCGGAAAATG+TGG 0.592325 5_3:+20442082 Msa0804510:CDS
TTACCGTCAAATCGCAACCT+TGG 0.592869 5_3:-20442114 None:intergenic
AGTGAGAGCTAAAGGTGGAA+GGG 0.598186 5_3:-20442495 None:intergenic
GAGAAAGACTTATACATGCA+TGG 0.599869 5_3:-20438711 None:intergenic
AAACCGATTCCAACTCAGAA+GGG 0.600214 5_3:-20441120 None:intergenic
GGGTCAACAGCAAAACCACC+AGG 0.600796 5_3:-20439323 None:intergenic
ATAAGTCTTTCTCTCCGACC+AGG 0.601227 5_3:+20438721 Msa0804510:five_prime_UTR
ATCATACACGGTGAAGCCGA+TGG 0.601799 5_3:-20443599 None:intergenic
GGAATGTAATAGAATTTCAG+TGG 0.605068 5_3:-20444032 None:intergenic
AAAACCGATTCCAACTCAGA+AGG 0.609545 5_3:-20441121 None:intergenic
GGGAATATTCCAAAGAGTGT+CGG 0.616862 5_3:-20443130 None:intergenic
TCTTCTACAGCAGCTAGCAA+AGG 0.616929 5_3:-20442921 None:intergenic
ATTACAATAACTCACCGAGA+AGG 0.618449 5_3:-20439412 None:intergenic
TGATTGAAGGGGTTGTGCGT+GGG 0.619430 5_3:+20439057 Msa0804510:five_prime_UTR
AGGAGCTTATTCCTAATGTG+AGG 0.622163 5_3:-20443688 None:intergenic
ATCCTCTTGAAGCTGTCAGG+AGG 0.623998 5_3:+20443279 Msa0804510:CDS
AATCAATGAGATCTGAATCA+GGG 0.624411 5_3:-20443847 None:intergenic
AACCACCAGGAATTGTAAGT+GGG 0.624729 5_3:-20439310 None:intergenic
TTTGGTTAAAGATCTTTATG+GGG 0.625965 5_3:+20441278 Msa0804510:intron
ATCCCACTTACAATTCCTGG+TGG 0.626761 5_3:+20439308 Msa0804510:CDS
GAAGAAGAATGATACCTGGT+CGG 0.631750 5_3:-20438735 None:intergenic
ATTCTCCTCCGTCACAGCTG+CGG 0.637070 5_3:+20438628 Msa0804510:five_prime_UTR
GCTCTCACTCCACTATGACA+TGG 0.639648 5_3:+20442509 Msa0804510:CDS
GAGGAAGAGTAAGAGAGAGA+CGG 0.641334 5_3:+20438671 Msa0804510:five_prime_UTR
TTTGGAATATTCCCATACGC+GGG 0.647148 5_3:+20443139 Msa0804510:CDS
GCGTTGTACATACCAAGCCA+TGG 0.657436 5_3:-20441181 None:intergenic
TTAACTACTTTGTTACAAGG+AGG 0.664306 5_3:+20441158 Msa0804510:CDS
TCTCTCTTACTCTTCCTCAC+CGG 0.671004 5_3:-20438666 None:intergenic
ATACTTCAATCAAAATACGA+CGG 0.671668 5_3:+20442063 Msa0804510:CDS
AGTGGAGTGAGAGCTAAAGG+TGG 0.679241 5_3:-20442500 None:intergenic
AAAAGGGAAGAATCAACATG+AGG 0.682862 5_3:-20441345 None:intergenic
GCCAAAGACCAAGATTCATG+TGG 0.686050 5_3:+20439217 Msa0804510:CDS
CAAAATACGACGGCTCATGG+CGG 0.687622 5_3:+20442073 Msa0804510:CDS
TGACTAGGTTCAAAACCTTG+CGG 0.687829 5_3:+20443379 Msa0804510:intron
TGATTTCATAGTATCATACA+CGG 0.704596 5_3:-20443611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAATTTTTAAAATTT+AGG + chr5_3:20439138-20439157 Msa0804510:five_prime_UTR 0.0%
!!! TTAAATTTTTTATATTTCCA+TGG + chr5_3:20440366-20440385 Msa0804510:intron 10.0%
!! TAAAAAAAAATATTACCTTT+AGG + chr5_3:20442673-20442692 Msa0804510:intron 10.0%
!! AAAAAAAAATATTACCTTTA+GGG + chr5_3:20442674-20442693 Msa0804510:intron 10.0%
!!! TATTTAAAAACATTTTAACT+CGG - chr5_3:20442995-20443014 None:intergenic 10.0%
!! CAATCGTAAAAAAAAAAAAA+AGG - chr5_3:20438987-20439006 None:intergenic 15.0%
!!! TTTTTTTTTTTTACGATTGA+AGG + chr5_3:20438988-20439007 Msa0804510:intron 15.0%
!!! TTTTTTTTTTTACGATTGAA+GGG + chr5_3:20438989-20439008 Msa0804510:intron 15.0%
!!! TTTATTTAAGATCAAACATT+TGG - chr5_3:20440044-20440063 None:intergenic 15.0%
!!! CACTTTTTATGTAAAAAAAT+GGG - chr5_3:20440420-20440439 None:intergenic 15.0%
!!! ACACTTTTTATGTAAAAAAA+TGG - chr5_3:20440421-20440440 None:intergenic 15.0%
!! AATATGATTTATCTAATTCT+TGG + chr5_3:20440700-20440719 Msa0804510:intron 15.0%
!!! TTCTGTTCTAATTTTATAAA+AGG + chr5_3:20440817-20440836 Msa0804510:intron 15.0%
!!! TCTGTTCTAATTTTATAAAA+GGG + chr5_3:20440818-20440837 Msa0804510:intron 15.0%
!!! TCCTTATATTAAATTTTGTT+TGG + chr5_3:20440885-20440904 Msa0804510:intron 15.0%
!! TCCAAACAAAATTTAATATA+AGG - chr5_3:20440889-20440908 None:intergenic 15.0%
!!! ATATATTTTTGATGCAAAAT+TGG - chr5_3:20442654-20442673 None:intergenic 15.0%
!!! TTTTTTTTTTTTTCCAATTC+AGG + chr5_3:20443561-20443580 Msa0804510:intron 15.0%
!! AAAACTAGAAATTGATTGAA+GGG + chr5_3:20439045-20439064 Msa0804510:five_prime_UTR 20.0%
!!! TAGGTTTTTTTTTGTTTTGT+TGG + chr5_3:20439157-20439176 Msa0804510:five_prime_UTR 20.0%
!! AGAAAAGTAATAAAAACTGT+GGG - chr5_3:20439504-20439523 None:intergenic 20.0%
!! TTAAGCTGTTAAATCTTTAT+TGG + chr5_3:20439751-20439770 Msa0804510:intron 20.0%
!! AAAAAATTTAACACTGATAC+AGG - chr5_3:20440357-20440376 None:intergenic 20.0%
!!! TTTTCTTAATAGCAATTTAG+AGG + chr5_3:20440391-20440410 Msa0804510:intron 20.0%
!!! CTGTTCTAATTTTATAAAAG+GGG + chr5_3:20440819-20440838 Msa0804510:intron 20.0%
!!! TGTTCTAATTTTATAAAAGG+GGG + chr5_3:20440820-20440839 Msa0804510:intron 20.0%
!! CAAAATTTAATATAAGGAGA+GGG - chr5_3:20440883-20440902 None:intergenic 20.0%
!! ACAAAATTTAATATAAGGAG+AGG - chr5_3:20440884-20440903 None:intergenic 20.0%
!! TTTATGCATACTTAAATTGA+AGG + chr5_3:20440956-20440975 Msa0804510:intron 20.0%
!! TATTTCACAGATTATTTAAG+CGG + chr5_3:20440986-20441005 Msa0804510:intron 20.0%
!!! GTTTGTAGATTTTTCTTTAA+CGG + chr5_3:20441096-20441115 Msa0804510:intron 20.0%
!!! CTTATAGTTTTTATGTGTTT+TGG + chr5_3:20441260-20441279 Msa0804510:intron 20.0%
!!! TTTTGGTTAAAGATCTTTAT+GGG + chr5_3:20441277-20441296 Msa0804510:intron 20.0%
!! ATATATGTAACTACACTATT+TGG + chr5_3:20441419-20441438 Msa0804510:intron 20.0%
!! TCTTAAAATAAGAAACAGAA+AGG + chr5_3:20441743-20441762 Msa0804510:intron 20.0%
!!! TTGGACAAATTTTTTACATA+GGG - chr5_3:20442282-20442301 None:intergenic 20.0%
!!! ATTGGACAAATTTTTTACAT+AGG - chr5_3:20442283-20442302 None:intergenic 20.0%
!! GTTAATAAAATGCATAAATC+TGG + chr5_3:20442428-20442447 Msa0804510:intron 20.0%
!! TATTACATTCCAATTATTGT+TGG + chr5_3:20444044-20444063 Msa0804510:three_prime_UTR 20.0%
!! TGAAATTGAATGTTTTGTGA+TGG + chr5_3:20438938-20438957 Msa0804510:intron 25.0%
! CAAAACTAGAAATTGATTGA+AGG + chr5_3:20439044-20439063 Msa0804510:five_prime_UTR 25.0%
! AAACTAGAAATTGATTGAAG+GGG + chr5_3:20439046-20439065 Msa0804510:five_prime_UTR 25.0%
! AGGGACACTAAAAATTAATT+TGG + chr5_3:20439098-20439117 Msa0804510:five_prime_UTR 25.0%
! GGGACACTAAAAATTAATTT+GGG + chr5_3:20439099-20439118 Msa0804510:five_prime_UTR 25.0%
!!! TTTGTTTTGTTGGTTGAATA+TGG + chr5_3:20439167-20439186 Msa0804510:five_prime_UTR 25.0%
! AAAAGTAATAAAAACTGTGG+GGG - chr5_3:20439502-20439521 None:intergenic 25.0%
! GAAAAGTAATAAAAACTGTG+GGG - chr5_3:20439503-20439522 None:intergenic 25.0%
! GAGAAAAGTAATAAAAACTG+TGG - chr5_3:20439505-20439524 None:intergenic 25.0%
! TATTGCTACCATAGTATAAA+GGG - chr5_3:20439714-20439733 None:intergenic 25.0%
! AGGAGAAAAACTATTATTGA+AGG + chr5_3:20440479-20440498 Msa0804510:intron 25.0%
! GGAGAAAAACTATTATTGAA+GGG + chr5_3:20440480-20440499 Msa0804510:intron 25.0%
! CATGATATTTCAAACATTCT+AGG + chr5_3:20440564-20440583 Msa0804510:intron 25.0%
! TTGATACTTCTTACAATCTA+TGG + chr5_3:20440756-20440775 Msa0804510:intron 25.0%
! ATGGATCATTTAGCTATATA+TGG + chr5_3:20440780-20440799 Msa0804510:intron 25.0%
! AACACCAACTATTAAATTCT+CGG + chr5_3:20440856-20440875 Msa0804510:intron 25.0%
!!! GTTTTGGTTAAAGATCTTTA+TGG + chr5_3:20441276-20441295 Msa0804510:intron 25.0%
! TTTGGTTAAAGATCTTTATG+GGG + chr5_3:20441278-20441297 Msa0804510:intron 25.0%
! TACACTTGAAACTTAAAAGA+AGG + chr5_3:20441606-20441625 Msa0804510:intron 25.0%
! ATAAGAAACAGAAAGGTTTA+TGG + chr5_3:20441750-20441769 Msa0804510:intron 25.0%
! ATACTTCAATCAAAATACGA+CGG + chr5_3:20442063-20442082 Msa0804510:CDS 25.0%
! ATAAACAATTCAGCTAATGT+GGG - chr5_3:20442237-20442256 None:intergenic 25.0%
! AAAATTTGTCCAATATATGC+AGG + chr5_3:20442289-20442308 Msa0804510:intron 25.0%
! GAATATTATCCTGCATATAT+TGG - chr5_3:20442301-20442320 None:intergenic 25.0%
! GAATCAATCAAGAAAATGAA+TGG + chr5_3:20442335-20442354 Msa0804510:intron 25.0%
! GAAAATATCTCTTTCGATAA+TGG + chr5_3:20442561-20442580 Msa0804510:intron 25.0%
! AATTTATAGGACTTCAGAAT+TGG - chr5_3:20442631-20442650 None:intergenic 25.0%
! GATGCAAAATTGGAATTTAT+AGG - chr5_3:20442644-20442663 None:intergenic 25.0%
!!! TATGCTTTTTTATTGATGTC+AGG + chr5_3:20442797-20442816 Msa0804510:intron 25.0%
! ATTAACAGTTCCAAATATCA+AGG - chr5_3:20443060-20443079 None:intergenic 25.0%
! TAGAACTCTTATGTTAATCA+TGG + chr5_3:20443099-20443118 Msa0804510:intron 25.0%
!! TTTGAAATTCTACTTCTATG+AGG + chr5_3:20443162-20443181 Msa0804510:CDS 25.0%
! AATATCCATCTATAATTTCC+AGG - chr5_3:20443335-20443354 None:intergenic 25.0%
! TGATTTCATAGTATCATACA+CGG - chr5_3:20443614-20443633 None:intergenic 25.0%
!!! CTCATTGATTTCATTAAAGT+AGG + chr5_3:20443860-20443879 Msa0804510:three_prime_UTR 25.0%
! CCAAAATAACCAACAATAAT+TGG - chr5_3:20444056-20444075 None:intergenic 25.0%
!!! CCAATTATTGTTGGTTATTT+TGG + chr5_3:20444053-20444072 Msa0804510:three_prime_UTR 25.0%
ACAAACACAGATAACAGATT+CGG - chr5_3:20438840-20438859 None:intergenic 30.0%
AATCTGTTATCTGTGTTTGT+TGG + chr5_3:20438840-20438859 Msa0804510:intron 30.0%
TTTGATTCTTCTCCAATTTG+TGG + chr5_3:20438868-20438887 Msa0804510:intron 30.0%
TTGATTCTTCTCCAATTTGT+GGG + chr5_3:20438869-20438888 Msa0804510:intron 30.0%
AAAAGAAAACCCCAATTCAA+AGG - chr5_3:20438909-20438928 None:intergenic 30.0%
!! GATTTGAGAATGGGTTTTAA+GGG + chr5_3:20439079-20439098 Msa0804510:five_prime_UTR 30.0%
ATACAGTGAGTGAAAGAAAA+GGG - chr5_3:20439346-20439365 None:intergenic 30.0%
AGCTGGTAAAAATAAGGTTA+GGG - chr5_3:20439645-20439664 None:intergenic 30.0%
CATTTCAGCTGGTAAAAATA+AGG - chr5_3:20439651-20439670 None:intergenic 30.0%
! CTAAAATTGATAGTTGCGTT+TGG + chr5_3:20439684-20439703 Msa0804510:intron 30.0%
CTATTGCTACCATAGTATAA+AGG - chr5_3:20439715-20439734 None:intergenic 30.0%
TGTAAACAATTCAAAACCCT+TGG - chr5_3:20439964-20439983 None:intergenic 30.0%
CAACAACAATAATGTAGACT+TGG - chr5_3:20440012-20440031 None:intergenic 30.0%
!!! TTGTTTCTGAAAGCTTTTTC+TGG + chr5_3:20440109-20440128 Msa0804510:intron 30.0%
!! TGTTTCTGAAAGCTTTTTCT+GGG + chr5_3:20440110-20440129 Msa0804510:intron 30.0%
! TTTTTCTGGGTTTGTGTTTT+TGG + chr5_3:20440123-20440142 Msa0804510:intron 30.0%
!!! TTACATGAATTTTGAGACAC+CGG - chr5_3:20440180-20440199 None:intergenic 30.0%
TCTCAAAATTCATGTAATCC+TGG + chr5_3:20440183-20440202 Msa0804510:intron 30.0%
ATGTAATCCTGGTTTAGTAA+TGG + chr5_3:20440194-20440213 Msa0804510:intron 30.0%
!! AGTTGATTTGCATAGTACAA+TGG + chr5_3:20440326-20440345 Msa0804510:intron 30.0%
! TTGCTATTAAGAAAAAGCCA+TGG - chr5_3:20440386-20440405 None:intergenic 30.0%
GAAAAGAAGCCAAAAGTTAT+TGG + chr5_3:20440625-20440644 Msa0804510:intron 30.0%
AAAAGTTATTGGCAAGCATA+GGG + chr5_3:20440636-20440655 Msa0804510:intron 30.0%
ACTTCTTACAATCTATGGTA+TGG + chr5_3:20440761-20440780 Msa0804510:intron 30.0%
TTTAGCTATATATGGTTGTC+TGG + chr5_3:20440788-20440807 Msa0804510:intron 30.0%
TTGATTCATGAATCATACCT+AGG + chr5_3:20441042-20441061 Msa0804510:intron 30.0%
AGATGTTAATGAAAGAACCT+AGG - chr5_3:20441062-20441081 None:intergenic 30.0%
CTGTTAACTACTTTGTTACA+AGG + chr5_3:20441155-20441174 Msa0804510:CDS 30.0%
TTAACTACTTTGTTACAAGG+AGG + chr5_3:20441158-20441177 Msa0804510:CDS 30.0%
AGCACAATAGTAAATAACCA+TGG - chr5_3:20441216-20441235 None:intergenic 30.0%
! TTGGTCATGACTTTTTGATA+TGG + chr5_3:20441438-20441457 Msa0804510:intron 30.0%
! CACAACTTATTGATGGTATT+TGG + chr5_3:20441678-20441697 Msa0804510:intron 30.0%
!! TGCATTATCGTTGATTCTAA+CGG + chr5_3:20441701-20441720 Msa0804510:intron 30.0%
ATTTATTGAATACACCTTGC+AGG + chr5_3:20441817-20441836 Msa0804510:intron 30.0%
TCGAATGACTTCATATGATA+TGG + chr5_3:20441847-20441866 Msa0804510:intron 30.0%
CGAATGACTTCATATGATAT+GGG + chr5_3:20441848-20441867 Msa0804510:intron 30.0%
AATATGAAGAGCAGGAAATA+AGG - chr5_3:20442164-20442183 None:intergenic 30.0%
CATAAACAATTCAGCTAATG+TGG - chr5_3:20442238-20442257 None:intergenic 30.0%
CACATTAGCTGAATTGTTTA+TGG + chr5_3:20442236-20442255 Msa0804510:intron 30.0%
ACATATATACACATTGAAGG+TGG - chr5_3:20442599-20442618 None:intergenic 30.0%
GGAACATATATACACATTGA+AGG - chr5_3:20442602-20442621 None:intergenic 30.0%
TCAAAAGGAAAATACCCTAA+AGG - chr5_3:20442691-20442710 None:intergenic 30.0%
!! TTTAGGGTATTTTCCTTTTG+AGG + chr5_3:20442690-20442709 Msa0804510:intron 30.0%
! GTCTAAAACTAAACCTCAAA+AGG - chr5_3:20442706-20442725 None:intergenic 30.0%
! CTGCAATTTTTCCAAAGTAT+TGG + chr5_3:20442824-20442843 Msa0804510:CDS 30.0%
!!! ATGCTTTTTTTGTAATCCTC+AGG - chr5_3:20443205-20443224 None:intergenic 30.0%
AATCAATGAGATCTGAATCA+GGG - chr5_3:20443850-20443869 None:intergenic 30.0%
AAATCAATGAGATCTGAATC+AGG - chr5_3:20443851-20443870 None:intergenic 30.0%
AGTAGGAAATAGTTTCTATG+TGG + chr5_3:20443877-20443896 Msa0804510:three_prime_UTR 30.0%
GATAAACTGAATACAGTGAA+AGG - chr5_3:20444005-20444024 None:intergenic 30.0%
GGAATGTAATAGAATTTCAG+TGG - chr5_3:20444035-20444054 None:intergenic 30.0%
!! ATACATGCATGGCTTTAGAT+TGG - chr5_3:20438703-20438722 None:intergenic 35.0%
GAGAAAGACTTATACATGCA+TGG - chr5_3:20438714-20438733 None:intergenic 35.0%
AAGAGAAGAAGAATGATACC+TGG - chr5_3:20438742-20438761 None:intergenic 35.0%
GTGAATGAAATGGGGAATTA+GGG - chr5_3:20438770-20438789 None:intergenic 35.0%
TGTGAATGAAATGGGGAATT+AGG - chr5_3:20438771-20438790 None:intergenic 35.0%
CCTAATCTGTGAATGAAATG+GGG - chr5_3:20438778-20438797 None:intergenic 35.0%
CCCTAATCTGTGAATGAAAT+GGG - chr5_3:20438779-20438798 None:intergenic 35.0%
CCCATTTCATTCACAGATTA+GGG + chr5_3:20438776-20438795 Msa0804510:intron 35.0%
CCATTTCATTCACAGATTAG+GGG + chr5_3:20438777-20438796 Msa0804510:intron 35.0%
CAAACACAGATAACAGATTC+GGG - chr5_3:20438839-20438858 None:intergenic 35.0%
TTCTCCAATTTGTGGGATTA+GGG + chr5_3:20438876-20438895 Msa0804510:intron 35.0%
TTTACGATTGAAGGGTTTGA+TGG + chr5_3:20438997-20439016 Msa0804510:intron 35.0%
!! GGATTTGAGAATGGGTTTTA+AGG + chr5_3:20439078-20439097 Msa0804510:five_prime_UTR 35.0%
TGAATATGGATTTGTGATGC+AGG + chr5_3:20439181-20439200 Msa0804510:exon 35.0%
GAATATGGATTTGTGATGCA+GGG + chr5_3:20439182-20439201 Msa0804510:exon 35.0%
CATACAGTGAGTGAAAGAAA+AGG - chr5_3:20439347-20439366 None:intergenic 35.0%
TTCCTTAGAACTTTGACTGT+GGG - chr5_3:20439381-20439400 None:intergenic 35.0%
ATTCCTTAGAACTTTGACTG+TGG - chr5_3:20439382-20439401 None:intergenic 35.0%
ATTACAATAACTCACCGAGA+AGG - chr5_3:20439415-20439434 None:intergenic 35.0%
ATGATAGTTGCAACTTGCAA+AGG - chr5_3:20439541-20439560 None:intergenic 35.0%
CAGCTGGTAAAAATAAGGTT+AGG - chr5_3:20439646-20439665 None:intergenic 35.0%
TGATTAACTGACATTTCAGC+TGG - chr5_3:20439662-20439681 None:intergenic 35.0%
TTGGAGTTCCCTTTATACTA+TGG + chr5_3:20439703-20439722 Msa0804510:intron 35.0%
! TCTTTATTGGCTGTATGTTC+TGG + chr5_3:20439764-20439783 Msa0804510:intron 35.0%
TGGTCTTCAAATACTTCCTA+AGG + chr5_3:20439784-20439803 Msa0804510:intron 35.0%
GGTCTTCAAATACTTCCTAA+GGG + chr5_3:20439785-20439804 Msa0804510:intron 35.0%
! TTCAGAAGTTTGTGTTTTGC+AGG + chr5_3:20439846-20439865 Msa0804510:intron 35.0%
ATCACAAACAGACACATTAG+AGG - chr5_3:20440074-20440093 None:intergenic 35.0%
GCTCAGATAATGCAAATGAT+GGG + chr5_3:20440145-20440164 Msa0804510:intron 35.0%
GTTTAGTAATGGCGAATCTA+AGG + chr5_3:20440205-20440224 Msa0804510:intron 35.0%
ACTTGGAATCAACGAGAATT+TGG + chr5_3:20440254-20440273 Msa0804510:intron 35.0%
GTGAGATTCTCACTGTTATT+AGG - chr5_3:20440280-20440299 None:intergenic 35.0%
!!! TTGTTTTTTTAAGCTGCTCG+CGG + chr5_3:20440456-20440475 Msa0804510:intron 35.0%
TTATTGAAGGGCCTTTATTC+TGG + chr5_3:20440492-20440511 Msa0804510:intron 35.0%
GAAATATCATGCTATCCACA+AGG - chr5_3:20440555-20440574 None:intergenic 35.0%
! CTATGCTTGCCAATAACTTT+TGG - chr5_3:20440637-20440656 None:intergenic 35.0%
CAAAAGTTATTGGCAAGCAT+AGG + chr5_3:20440635-20440654 Msa0804510:intron 35.0%
CACAGTATACAACTTTCAGT+AGG + chr5_3:20440671-20440690 Msa0804510:intron 35.0%
TTTCTACTTGCACTTCCAAA+TGG - chr5_3:20441324-20441343 None:intergenic 35.0%
AAAAGGGAAGAATCAACATG+AGG - chr5_3:20441348-20441367 None:intergenic 35.0%
GATAACTCATGTGCGATATT+TGG + chr5_3:20441524-20441543 Msa0804510:intron 35.0%
TCACTTGCACAACTTATTGA+TGG + chr5_3:20441671-20441690 Msa0804510:intron 35.0%
! CAATTCGTAACCCTGTATTT+TGG + chr5_3:20441906-20441925 Msa0804510:intron 35.0%
!!! GTCATTGGAGGTTTTGAATA+TGG + chr5_3:20441961-20441980 Msa0804510:intron 35.0%
! AGTCTTTTTATGAAGCTCTC+TGG + chr5_3:20442021-20442040 Msa0804510:CDS 35.0%
GAGTTAGACACACTATACTA+AGG - chr5_3:20442196-20442215 None:intergenic 35.0%
TAACTCTATGCGTAAATACG+AGG + chr5_3:20442210-20442229 Msa0804510:intron 35.0%
GATAGTTCTCAACTGTTAGA+TGG + chr5_3:20442401-20442420 Msa0804510:intron 35.0%
ACAGTTCCAAATATCAAGGT+GGG - chr5_3:20443056-20443075 None:intergenic 35.0%
AACAGTTCCAAATATCAAGG+TGG - chr5_3:20443057-20443076 None:intergenic 35.0%
GAGTTCTACAATAACAACAC+AGG - chr5_3:20443087-20443106 None:intergenic 35.0%
! TTTTGTAATCCTCAGGTACA+TGG - chr5_3:20443198-20443217 None:intergenic 35.0%
!! GGATTACAAAAAAAGCATCG+TGG + chr5_3:20443207-20443226 Msa0804510:intron 35.0%
! TGCAGGTAACATGCTTTATT+TGG + chr5_3:20443306-20443325 Msa0804510:intron 35.0%
GATACAAAGTTAACCTGACT+AGG + chr5_3:20443364-20443383 Msa0804510:intron 35.0%
TCTCATAGTCCCTTTCAATT+CGG - chr5_3:20443417-20443436 None:intergenic 35.0%
! CTTTTGAGCAATCAAAACCA+TGG - chr5_3:20443441-20443460 None:intergenic 35.0%
!!! GTTTTGATTGCTCAAAAGCA+AGG + chr5_3:20443443-20443462 Msa0804510:intron 35.0%
AGCTACACATTGCATTCTTT+CGG + chr5_3:20443776-20443795 Msa0804510:three_prime_UTR 35.0%
CGGATTGTAAATAGAGATAG+AGG + chr5_3:20443796-20443815 Msa0804510:three_prime_UTR 35.0%
!! TGAATCAGGGTATTGTTTGT+TGG - chr5_3:20443837-20443856 None:intergenic 35.0%
AGTTTCTATGTGGTTTAGAC+AGG + chr5_3:20443887-20443906 Msa0804510:three_prime_UTR 35.0%
! CTTTTTGAATGTGCAAGTAG+AGG + chr5_3:20443946-20443965 Msa0804510:three_prime_UTR 35.0%
GAAGAAGAATGATACCTGGT+CGG - chr5_3:20438738-20438757 None:intergenic 40.0%
CCCCATTTCATTCACAGATT+AGG + chr5_3:20438775-20438794 Msa0804510:intron 40.0%
CCCCTAATCTGTGAATGAAA+TGG - chr5_3:20438780-20438799 None:intergenic 40.0%
CTTCTCCAATTTGTGGGATT+AGG + chr5_3:20438875-20438894 Msa0804510:intron 40.0%
GAAACCCTAATCCCACAAAT+TGG - chr5_3:20438883-20438902 None:intergenic 40.0%
AGGGTTTCGAACCTTTGAAT+TGG + chr5_3:20438895-20438914 Msa0804510:intron 40.0%
GGGTTTCGAACCTTTGAATT+GGG + chr5_3:20438896-20438915 Msa0804510:intron 40.0%
GGTTTCGAACCTTTGAATTG+GGG + chr5_3:20438897-20438916 Msa0804510:intron 40.0%
! ATTGAAGGGTTTGATGGCAT+GGG + chr5_3:20439003-20439022 Msa0804510:intron 40.0%
! ACCACATGAATCTTGGTCTT+TGG - chr5_3:20439221-20439240 None:intergenic 40.0%
AAGACCAAGATTCATGTGGT+TGG + chr5_3:20439221-20439240 Msa0804510:CDS 40.0%
TGTTCCAACCACATGAATCT+TGG - chr5_3:20439228-20439247 None:intergenic 40.0%
AAGATTCATGTGGTTGGAAC+AGG + chr5_3:20439227-20439246 Msa0804510:CDS 40.0%
TGCATCTGTTGTTGATCAGA+AGG + chr5_3:20439271-20439290 Msa0804510:CDS 40.0%
AACCACCAGGAATTGTAAGT+GGG - chr5_3:20439313-20439332 None:intergenic 40.0%
AAACCACCAGGAATTGTAAG+TGG - chr5_3:20439314-20439333 None:intergenic 40.0%
! GAAGTTTGTGTTTTGCAGGA+TGG + chr5_3:20439850-20439869 Msa0804510:intron 40.0%
! TTGTGTTTTGCAGGATGGTA+AGG + chr5_3:20439855-20439874 Msa0804510:intron 40.0%
TGGCAGAAACATCTTTCTCA+CGG - chr5_3:20439944-20439963 None:intergenic 40.0%
! TGAGAAAGATGTTTCTGCCA+AGG + chr5_3:20439944-20439963 Msa0804510:intron 40.0%
! GAGAAAGATGTTTCTGCCAA+GGG + chr5_3:20439945-20439964 Msa0804510:intron 40.0%
GGCTCAGATAATGCAAATGA+TGG + chr5_3:20440144-20440163 Msa0804510:intron 40.0%
! CAGATAATGCAAATGATGGG+TGG + chr5_3:20440148-20440167 Msa0804510:intron 40.0%
AGATTCGCCATTACTAAACC+AGG - chr5_3:20440204-20440223 None:intergenic 40.0%
TAGTAATGGCGAATCTAAGG+AGG + chr5_3:20440208-20440227 Msa0804510:intron 40.0%
ATTCCAAGTAATGTGCGAAC+AGG - chr5_3:20440243-20440262 None:intergenic 40.0%
GGGTCCGAGAATTTAATAGT+TGG - chr5_3:20440863-20440882 None:intergenic 40.0%
! AAACCGATTCCAACTCAGAA+GGG - chr5_3:20441123-20441142 None:intergenic 40.0%
! AAAACCGATTCCAACTCAGA+AGG - chr5_3:20441124-20441143 None:intergenic 40.0%
TGGTAAGCAACAGCGAAAAA+GGG - chr5_3:20441364-20441383 None:intergenic 40.0%
GTGAGACCAGTTATAATGTG+CGG + chr5_3:20441462-20441481 Msa0804510:intron 40.0%
TGAGACCAGTTATAATGTGC+GGG + chr5_3:20441463-20441482 Msa0804510:intron 40.0%
TTATAATGTGCGGGAGTAGT+TGG + chr5_3:20441472-20441491 Msa0804510:intron 40.0%
! GCACATGAGTTATCTGAAGT+AGG - chr5_3:20441518-20441537 None:intergenic 40.0%
!! TCATGTGCGATATTTGGTGT+GGG + chr5_3:20441530-20441549 Msa0804510:intron 40.0%
!! ATATTTGGTGTGGGTCTGTT+TGG + chr5_3:20441539-20441558 Msa0804510:intron 40.0%
! CCATTTTCAACACACACAAG+AGG - chr5_3:20441879-20441898 None:intergenic 40.0%
CCTCTTGTGTGTGTTGAAAA+TGG + chr5_3:20441876-20441895 Msa0804510:intron 40.0%
CTTGTGTGTGTTGAAAATGG+CGG + chr5_3:20441879-20441898 Msa0804510:intron 40.0%
ATGCATAGCGCCAAAATACA+GGG - chr5_3:20441919-20441938 None:intergenic 40.0%
!! TTTTATGAAGCTCTCTGGAG+CGG + chr5_3:20442026-20442045 Msa0804510:CDS 40.0%
AATCAAAATACGACGGCTCA+TGG + chr5_3:20442070-20442089 Msa0804510:CDS 40.0%
TTCCTGCTCTTCATATTGAC+TGG + chr5_3:20442167-20442186 Msa0804510:intron 40.0%
AACCAGTCAATATGAAGAGC+AGG - chr5_3:20442172-20442191 None:intergenic 40.0%
! GCAGTAACACTAAGAGTATG+TGG - chr5_3:20442458-20442477 None:intergenic 40.0%
TACCTGATTCCATGTCATAG+TGG - chr5_3:20442521-20442540 None:intergenic 40.0%
ACTATGACATGGAATCAGGT+AGG + chr5_3:20442520-20442539 Msa0804510:intron 40.0%
!! TTCCAAAGTATTGGCAGACT+TGG + chr5_3:20442833-20442852 Msa0804510:CDS 40.0%
AACCAAGTCTGCCAATACTT+TGG - chr5_3:20442838-20442857 None:intergenic 40.0%
!! CGTTTTTGATTCTGAGCAAG+AGG - chr5_3:20442873-20442892 None:intergenic 40.0%
GCTTTCAGCAACCTTATTGA+AGG + chr5_3:20442960-20442979 Msa0804510:CDS 40.0%
! GGAGTAAAGCACCTTCAATA+AGG - chr5_3:20442974-20442993 None:intergenic 40.0%
TAGCTTCCCACCTTGATATT+TGG + chr5_3:20443047-20443066 Msa0804510:intron 40.0%
! GGGAATATTCCAAAGAGTGT+CGG - chr5_3:20443133-20443152 None:intergenic 40.0%
!! CTTTGGAATATTCCCATACG+CGG + chr5_3:20443138-20443157 Msa0804510:CDS 40.0%
! TTTGGAATATTCCCATACGC+GGG + chr5_3:20443139-20443158 Msa0804510:CDS 40.0%
AGAATTTCAAACCCGCGTAT+GGG - chr5_3:20443153-20443172 None:intergenic 40.0%
TAGAATTTCAAACCCGCGTA+TGG - chr5_3:20443154-20443173 None:intergenic 40.0%
TTCAAGAGGATGTGAATGTC+TGG - chr5_3:20443270-20443289 None:intergenic 40.0%
!! ACATGCTTTATTTGGTCTCC+TGG + chr5_3:20443314-20443333 Msa0804510:intron 40.0%
GGTCTCCTGGAAATTATAGA+TGG + chr5_3:20443327-20443346 Msa0804510:intron 40.0%
TGACTAGGTTCAAAACCTTG+CGG + chr5_3:20443379-20443398 Msa0804510:intron 40.0%
TCTGAAGAAGCCGAATTGAA+AGG + chr5_3:20443404-20443423 Msa0804510:CDS 40.0%
CTGAAGAAGCCGAATTGAAA+GGG + chr5_3:20443405-20443424 Msa0804510:CDS 40.0%
GATACTCAGCCCTAAAAACA+GGG - chr5_3:20443477-20443496 None:intergenic 40.0%
TGATACTCAGCCCTAAAAAC+AGG - chr5_3:20443478-20443497 None:intergenic 40.0%
!!! TTTTAGGGCTGAGTATCAGT+TGG + chr5_3:20443480-20443499 Msa0804510:intron 40.0%
!! AATTCAGGTTGTTCCATCTG+CGG + chr5_3:20443576-20443595 Msa0804510:intron 40.0%
AGTACCATCAAGAGATGAAG+TGG + chr5_3:20443642-20443661 Msa0804510:CDS 40.0%
TAGTCCACTTCATCTCTTGA+TGG - chr5_3:20443649-20443668 None:intergenic 40.0%
GCTTATTCCTAATGTGAGGA+TGG - chr5_3:20443687-20443706 None:intergenic 40.0%
AGGAGCTTATTCCTAATGTG+AGG - chr5_3:20443691-20443710 None:intergenic 40.0%
GAATAGAATGAGAAGAAGCC+AGG - chr5_3:20443733-20443752 None:intergenic 40.0%
GAATGTGCAAGTAGAGGTAA+TGG + chr5_3:20443952-20443971 Msa0804510:three_prime_UTR 40.0%
TCTCTCTTACTCTTCCTCAC+CGG - chr5_3:20438669-20438688 None:intergenic 45.0%
GAGGAAGAGTAAGAGAGAGA+CGG + chr5_3:20438671-20438690 Msa0804510:five_prime_UTR 45.0%
ATAAGTCTTTCTCTCCGACC+AGG + chr5_3:20438721-20438740 Msa0804510:five_prime_UTR 45.0%
! GATTGAAGGGTTTGATGGCA+TGG + chr5_3:20439002-20439021 Msa0804510:intron 45.0%
TTGTGCGTGGGATTTGAGAA+TGG + chr5_3:20439069-20439088 Msa0804510:five_prime_UTR 45.0%
TGTGCGTGGGATTTGAGAAT+GGG + chr5_3:20439070-20439089 Msa0804510:five_prime_UTR 45.0%
TGATGCAGGGTTTGAATCAG+AGG + chr5_3:20439195-20439214 Msa0804510:exon 45.0%
GCCAAAGACCAAGATTCATG+TGG + chr5_3:20439217-20439236 Msa0804510:CDS 45.0%
TGCATCCCACTTACAATTCC+TGG + chr5_3:20439305-20439324 Msa0804510:CDS 45.0%
ATCCCACTTACAATTCCTGG+TGG + chr5_3:20439308-20439327 Msa0804510:CDS 45.0%
CTCCCACAGTCAAAGTTCTA+AGG + chr5_3:20439376-20439395 Msa0804510:CDS 45.0%
AATAACTCACCGAGAAGGCT+TGG - chr5_3:20439410-20439429 None:intergenic 45.0%
CAATGCGCAAATAAGCCCTT+AGG - chr5_3:20439803-20439822 None:intergenic 45.0%
GGCAGAAACATCTTTCTCAC+GGG - chr5_3:20439943-20439962 None:intergenic 45.0%
!! AAATGATGGGTGGTATCCTC+CGG + chr5_3:20440158-20440177 Msa0804510:intron 45.0%
!!! CATGAATTTTGAGACACCGG+AGG - chr5_3:20440177-20440196 None:intergenic 45.0%
!!! TTTTTTTAAGCTGCTCGCGG+AGG + chr5_3:20440459-20440478 Msa0804510:intron 45.0%
GAAGGGCCTTTATTCTGGAT+TGG + chr5_3:20440497-20440516 Msa0804510:intron 45.0%
!! GCCTTTATTCTGGATTGGCA+GGG + chr5_3:20440502-20440521 Msa0804510:intron 45.0%
TCCCTGCCAATCCAGAATAA+AGG - chr5_3:20440506-20440525 None:intergenic 45.0%
TGCTATCCACAAGGATCTCA+CGG - chr5_3:20440546-20440565 None:intergenic 45.0%
TTTAACGGTCCCTTCTGAGT+TGG + chr5_3:20441111-20441130 Msa0804510:CDS 45.0%
!! CTGAGTTGGAATCGGTTTTG+AGG + chr5_3:20441125-20441144 Msa0804510:CDS 45.0%
ACTTTGTTACAAGGAGGCCA+TGG + chr5_3:20441164-20441183 Msa0804510:CDS 45.0%
! GTGATACCTGTTGTGCCATT+TGG + chr5_3:20441306-20441325 Msa0804510:CDS 45.0%
CTGGTAAGCAACAGCGAAAA+AGG - chr5_3:20441365-20441384 None:intergenic 45.0%
CTACTCCCGCACATTATAAC+TGG - chr5_3:20441471-20441490 None:intergenic 45.0%
!! GGGAGTAGTTGGTTTGTTTG+CGG + chr5_3:20441483-20441502 Msa0804510:intron 45.0%
! CTCATGTGCGATATTTGGTG+TGG + chr5_3:20441529-20441548 Msa0804510:intron 45.0%
CATTCGAGCAAATACCTGCA+AGG - chr5_3:20441834-20441853 None:intergenic 45.0%
CATGCATAGCGCCAAAATAC+AGG - chr5_3:20441920-20441939 None:intergenic 45.0%
TTGGCAGGTAATGTCATTGG+AGG + chr5_3:20441949-20441968 Msa0804510:intron 45.0%
TTACCGTCAAATCGCAACCT+TGG - chr5_3:20442117-20442136 None:intergenic 45.0%
! TACTCTTAGTGTTACTGCCC+AGG + chr5_3:20442460-20442479 Msa0804510:intron 45.0%
!! AAGGGGCATCTCTATATCCT+GGG - chr5_3:20442480-20442499 None:intergenic 45.0%
AGTGAGAGCTAAAGGTGGAA+GGG - chr5_3:20442498-20442517 None:intergenic 45.0%
! CATAGTGGAGTGAGAGCTAA+AGG - chr5_3:20442506-20442525 None:intergenic 45.0%
CTCCACTATGACATGGAATC+AGG + chr5_3:20442516-20442535 Msa0804510:CDS 45.0%
GGACTTCAGAATTGGCAGAA+TGG - chr5_3:20442623-20442642 None:intergenic 45.0%
TCTTCTACAGCAGCTAGCAA+AGG - chr5_3:20442924-20442943 None:intergenic 45.0%
CAATAAGGTTGCTGAAAGCC+TGG - chr5_3:20442959-20442978 None:intergenic 45.0%
!!! GCAAGGTTTTGAACCTAGTC+AGG - chr5_3:20443380-20443399 None:intergenic 45.0%
GAAAGGGACTATGAGATCCA+TGG + chr5_3:20443421-20443440 Msa0804510:CDS 45.0%
TGATTGCTCAAAAGCAAGGC+TGG + chr5_3:20443447-20443466 Msa0804510:intron 45.0%
!!! GCTGGAAGACCCTGTTTTTA+GGG + chr5_3:20443465-20443484 Msa0804510:intron 45.0%
GCAGATGGAACAACCTGAAT+TGG - chr5_3:20443577-20443596 None:intergenic 45.0%
! CATCTCTTGATGGTACTCTC+AGG - chr5_3:20443639-20443658 None:intergenic 45.0%
CTGTCAACCATCCTCACATT+AGG + chr5_3:20443677-20443696 Msa0804510:three_prime_UTR 45.0%
GTTGAAGCTTGCGAGAAGTT+AGG - chr5_3:20443711-20443730 None:intergenic 45.0%
TTGATTGAAGGGGTTGTGCG+TGG + chr5_3:20439056-20439075 Msa0804510:five_prime_UTR 50.0%
TGATTGAAGGGGTTGTGCGT+GGG + chr5_3:20439057-20439076 Msa0804510:five_prime_UTR 50.0%
GAATCCAAGCCAAGCCTTCT+CGG + chr5_3:20439398-20439417 Msa0804510:CDS 50.0%
GCTCCTGTTCGCACATTACT+TGG + chr5_3:20440237-20440256 Msa0804510:intron 50.0%
!! GGCCTTTATTCTGGATTGGC+AGG + chr5_3:20440501-20440520 Msa0804510:intron 50.0%
GTCTTACCGTGAGATCCTTG+TGG + chr5_3:20440537-20440556 Msa0804510:intron 50.0%
! GGTCCCTTCTGAGTTGGAAT+CGG + chr5_3:20441117-20441136 Msa0804510:CDS 50.0%
GCGTTGTACATACCAAGCCA+TGG - chr5_3:20441184-20441203 None:intergenic 50.0%
TACAACGCTGCTAGCTACCA+TGG + chr5_3:20441196-20441215 Msa0804510:intron 50.0%
GCACTTCCAAATGGCACAAC+AGG - chr5_3:20441315-20441334 None:intergenic 50.0%
ACCAGATGAGCTGCTCTTTG+AGG + chr5_3:20441380-20441399 Msa0804510:CDS 50.0%
ACCTCAAAGAGCAGCTCATC+TGG - chr5_3:20441384-20441403 None:intergenic 50.0%
TTGGCGCTATGCATGCTTGA+AGG + chr5_3:20441925-20441944 Msa0804510:intron 50.0%
TGGCGCTATGCATGCTTGAA+GGG + chr5_3:20441926-20441945 Msa0804510:intron 50.0%
GCTATGCATGCTTGAAGGGT+TGG + chr5_3:20441930-20441949 Msa0804510:intron 50.0%
! GGGTTGGCAGGTAATGTCAT+TGG + chr5_3:20441946-20441965 Msa0804510:intron 50.0%
CAAAATACGACGGCTCATGG+CGG + chr5_3:20442073-20442092 Msa0804510:CDS 50.0%
GGCGGAAAATGTGGCTCTTA+CGG + chr5_3:20442091-20442110 Msa0804510:CDS 50.0%
AAATGTGGCTCTTACGGCCA+AGG + chr5_3:20442097-20442116 Msa0804510:CDS 50.0%
!! GAAGGGGCATCTCTATATCC+TGG - chr5_3:20442481-20442500 None:intergenic 50.0%
GTGAGAGCTAAAGGTGGAAG+GGG - chr5_3:20442497-20442516 None:intergenic 50.0%
GAGTGAGAGCTAAAGGTGGA+AGG - chr5_3:20442499-20442518 None:intergenic 50.0%
AGTGGAGTGAGAGCTAAAGG+TGG - chr5_3:20442503-20442522 None:intergenic 50.0%
GCTCTCACTCCACTATGACA+TGG + chr5_3:20442509-20442528 Msa0804510:CDS 50.0%
! AATGAAGCGCCATGTACCTG+AGG + chr5_3:20443186-20443205 Msa0804510:intron 50.0%
ATCGTGGCGAAACTCACATG+TGG + chr5_3:20443223-20443242 Msa0804510:intron 50.0%
GAAACTCACATGTGGATCCG+TGG + chr5_3:20443231-20443250 Msa0804510:intron 50.0%
TGGATCCGTGGCAGGTTTAT+TGG + chr5_3:20443243-20443262 Msa0804510:intron 50.0%
GGATCCGTGGCAGGTTTATT+GGG + chr5_3:20443244-20443263 Msa0804510:intron 50.0%
CACATCCTCTTGAAGCTGTC+AGG + chr5_3:20443276-20443295 Msa0804510:CDS 50.0%
ATCCTCTTGAAGCTGTCAGG+AGG + chr5_3:20443279-20443298 Msa0804510:CDS 50.0%
!! GGCTGGAAGACCCTGTTTTT+AGG + chr5_3:20443464-20443483 Msa0804510:intron 50.0%
ACTTCTCGCAAGCTTCAACC+TGG + chr5_3:20443712-20443731 Msa0804510:three_prime_UTR 50.0%
ATTCTCCTCCGTCACAGCTG+CGG + chr5_3:20438628-20438647 Msa0804510:five_prime_UTR 55.0%
! GTTTTTCGCCGCAGCTGTGA+CGG - chr5_3:20438639-20438658 None:intergenic 55.0%
GTCACAGCTGCGGCGAAAAA+CGG + chr5_3:20438638-20438657 Msa0804510:five_prime_UTR 55.0%
! GGTTTGATGGCATGGGAGAG+AGG + chr5_3:20439010-20439029 Msa0804510:five_prime_UTR 55.0%
ATGGCATGGGAGAGAGGAAC+TGG + chr5_3:20439016-20439035 Msa0804510:five_prime_UTR 55.0%
GGGTCAACAGCAAAACCACC+AGG - chr5_3:20439326-20439345 None:intergenic 55.0%
CTCACGGTAAGACACCAGCA+AGG - chr5_3:20440530-20440549 None:intergenic 55.0%
GTTACAAGGAGGCCATGGCT+TGG + chr5_3:20441169-20441188 Msa0804510:CDS 55.0%
! TGCATGCTTGAAGGGTTGGC+AGG + chr5_3:20441934-20441953 Msa0804510:intron 55.0%
! ACGGCTCATGGCGGAAAATG+TGG + chr5_3:20442082-20442101 Msa0804510:CDS 55.0%
CGGCCAAGGTTGCGATTTGA+CGG + chr5_3:20442111-20442130 Msa0804510:CDS 55.0%
!! TCCAAAGAGTGTCGGAGCTG+TGG - chr5_3:20443125-20443144 None:intergenic 55.0%
CTGGCCCAATAAACCTGCCA+CGG - chr5_3:20443251-20443270 None:intergenic 55.0%
TGCCTCCTGACAGCTTCAAG+AGG - chr5_3:20443284-20443303 None:intergenic 55.0%
AGCTGTCAGGAGGCAAATGC+AGG + chr5_3:20443289-20443308 Msa0804510:CDS 55.0%
GTTGTTCCATCTGCGGCCAT+CGG + chr5_3:20443583-20443602 Msa0804510:CDS 55.0%
! GCAGCTGTGACGGAGGAGAA+TGG - chr5_3:20438629-20438648 None:intergenic 60.0%
ACAGCTGCGGCGAAAAACGG+CGG + chr5_3:20438641-20438660 Msa0804510:five_prime_UTR 60.0%
CTCACCGAGAAGGCTTGGCT+TGG - chr5_3:20439405-20439424 None:intergenic 60.0%
! GGATTGGCAGGGAACCTTGC+TGG + chr5_3:20440513-20440532 Msa0804510:intron 60.0%
AGAAGAACCTGCTCTGCGCC+AGG + chr5_3:20442938-20442957 Msa0804510:CDS 60.0%
GCCACAGCTCCGACACTCTT+TGG + chr5_3:20443121-20443140 Msa0804510:intron 60.0%
CTCACATGTGGATCCGTGGC+AGG + chr5_3:20443235-20443254 Msa0804510:intron 60.0%
CGGCTTCTTCAGATGCCGCA+AGG - chr5_3:20443397-20443416 None:intergenic 60.0%
TTTCGCCGCAGCTGTGACGG+AGG - chr5_3:20438636-20438655 None:intergenic 65.0%
CTGAAAGCCTGGCGCAGAGC+AGG - chr5_3:20442948-20442967 None:intergenic 65.0%
!! GAAAAACGGCGGCGCCGGTG+AGG + chr5_3:20438652-20438671 Msa0804510:five_prime_UTR 70.0%
GCGGCGAAAAACGGCGGCGC+CGG + chr5_3:20438647-20438666 Msa0804510:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 20438608 20444114 20438608 ID=Msa0804510;Name=Msa0804510
chr5_3 mRNA 20438608 20444114 20438608 ID=Msa0804510-mRNA-1;Parent=Msa0804510;Name=Msa0804510-mRNA-1;_AED=0.20;_eAED=0.20;_QI=322|0.3|0.63|1|0.9|0.81|11|445|340
chr5_3 exon 20438608 20438742 20438608 ID=Msa0804510-mRNA-1:exon:8262;Parent=Msa0804510-mRNA-1
chr5_3 exon 20439010 20439419 20439010 ID=Msa0804510-mRNA-1:exon:8263;Parent=Msa0804510-mRNA-1
chr5_3 exon 20441104 20441190 20441104 ID=Msa0804510-mRNA-1:exon:8264;Parent=Msa0804510-mRNA-1
chr5_3 exon 20441289 20441401 20441289 ID=Msa0804510-mRNA-1:exon:8265;Parent=Msa0804510-mRNA-1
chr5_3 exon 20442021 20442132 20442021 ID=Msa0804510-mRNA-1:exon:8266;Parent=Msa0804510-mRNA-1
chr5_3 exon 20442482 20442537 20442482 ID=Msa0804510-mRNA-1:exon:8267;Parent=Msa0804510-mRNA-1
chr5_3 exon 20442819 20442981 20442819 ID=Msa0804510-mRNA-1:exon:8268;Parent=Msa0804510-mRNA-1
chr5_3 exon 20443128 20443198 20443128 ID=Msa0804510-mRNA-1:exon:8269;Parent=Msa0804510-mRNA-1
chr5_3 exon 20443257 20443310 20443257 ID=Msa0804510-mRNA-1:exon:8270;Parent=Msa0804510-mRNA-1
chr5_3 exon 20443386 20443442 20443386 ID=Msa0804510-mRNA-1:exon:8271;Parent=Msa0804510-mRNA-1
chr5_3 exon 20443583 20444114 20443583 ID=Msa0804510-mRNA-1:exon:8272;Parent=Msa0804510-mRNA-1
chr5_3 five_prime_UTR 20438608 20438742 20438608 ID=Msa0804510-mRNA-1:five_prime_utr;Parent=Msa0804510-mRNA-1
chr5_3 five_prime_UTR 20439010 20439196 20439010 ID=Msa0804510-mRNA-1:five_prime_utr;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20439197 20439419 20439197 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20441104 20441190 20441104 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20441289 20441401 20441289 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20442021 20442132 20442021 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20442482 20442537 20442482 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20442819 20442981 20442819 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20443128 20443198 20443128 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20443257 20443310 20443257 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20443386 20443442 20443386 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 CDS 20443583 20443669 20443583 ID=Msa0804510-mRNA-1:cds;Parent=Msa0804510-mRNA-1
chr5_3 three_prime_UTR 20443670 20444114 20443670 ID=Msa0804510-mRNA-1:three_prime_utr;Parent=Msa0804510-mRNA-1
Gene Sequence

>Msa0804510

ATGCAGGGTTTGAATCAGAGGCCAAAGACCAAGATTCATGTGGTTGGAACAGGTTCTATGAATTTAGCTGAGTATGCATCTGTTGTTGATCAGAAGGATTTTGATTTGTGCATCCCACTTACAATTCCTGGTGGTTTTGCTGTTGACCCTTTTCTTTCACTCACTGTATGTTCAACAATCTCCCACAGTCAAAGTTCTAAGGAATCCAAGCCAAGCCTTCTCGATTTTTCTTTAACGGTCCCTTCTGAGTTGGAATCGGTTTTGAGGTTGAAGACTGTTAACTACTTTGTTACAAGGAGGCCATGGCTTGATCTTTATGGGGTTAATGTGATACCTGTTGTGCCATTTGGAAGTGCAAGTAGAAAGCCTCATGTTGATTCTTCCCTTTTTCGCTGTTGCTTACCAGATGAGCTGCTCTTTGAGAGTCTTTTTATGAAGCTCTCTGGAGCGGTTGAAAACTATAAGATACTTCAATCAAAATACGACGGCTCATGGCGGAAAATGTGGCTCTTACGGCCAAGGTTGCGATTTGACGGATATAGAGATGCCCCTTCCACCTTTAGCTCTCACTCCACTATGACATGGAATCAGGAAGACTGCAATTTTTCCAAAGTATTGGCAGACTTGGTTGATACAATCAAACCTCTTGCTCAGAATCAAAAACGTGTAATAGAACATAGTCTGCTCTCATCACCTTTGCTAGCTGCTGTAGAAGAACCTGCTCTGCGCCAGGCTTTCAGCAACCTTATTGAAGCTCCGACACTCTTTGGAATATTCCCATACGCGGGTTTGAAATTCTACTTCTATGAGGAAATGAAGCGCCATGTTTATTGGGCCAGACATTCACATCCTCTTGAAGCTGTCAGGAGGCAAATGCAGGTTCAAAACCTTGCGGCATCTGAAGAAGCCGAATTGAAAGGGACTATGAGATCCATGGTTGTTCCATCTGCGGCCATCGGCTTCACCGTGTATGATACTATGAAATCATGCCTGAGAGTACCATCAAGAGATGAAGTGGACTAA
Protein sequence

>Msa0804510

MQGLNQRPKTKIHVVGTGSMNLAEYASVVDQKDFDLCIPLTIPGGFAVDPFLSLTVCSTISHSQSSKESKPSLLDFSLTVPSELESVLRLKTVNYFVTRRPWLDLYGVNVIPVVPFGSASRKPHVDSSLFRCCLPDELLFESLFMKLSGAVENYKILQSKYDGSWRKMWLLRPRLRFDGYRDAPSTFSSHSTMTWNQEDCNFSKVLADLVDTIKPLAQNQKRVIEHSLLSSPLLAAVEEPALRQAFSNLIEAPTLFGIFPYAGLKFYFYEEMKRHVYWARHSHPLEAVRRQMQVQNLAASEEAELKGTMRSMVVPSAAIGFTVYDTMKSCLRVPSRDEVD*