Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0927520 | Msa0927530 | 0.880228 | 6.523552e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927530 | MtrunA17_Chr4g0059611 | 87.500 | 32 | 4 | 0 | 70 | 101 | 297 | 328 | 7.08e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGTTGATTCCCTTTC+AGG | 0.115216 | 6_2:+71884672 | Msa0927540:CDS |
| ACTCTAGTTTCTAGTTTCTT+TGG | 0.161914 | 6_2:+71884552 | Msa0927540:five_prime_UTR |
| CTCTAGTTTCTAGTTTCTTT+GGG | 0.190554 | 6_2:+71884553 | Msa0927540:five_prime_UTR |
| ACTTGGAATCAACGAGAATT+TGG | 0.216584 | 6_2:-71879992 | Msa0927530:CDS |
| GGGAATCTCTAGAGAGAAAT+TGG | 0.313755 | 6_2:-71884616 | Msa0927530:CDS |
| TTCTCCATTGATGAAGAGTT+TGG | 0.335637 | 6_2:-71884652 | Msa0927530:CDS |
| GCTCCTGTTCGCACATTACT+TGG | 0.338306 | 6_2:-71880009 | Msa0927530:CDS |
| GTTTAGTAATGGCGAATCTA+AGG | 0.369258 | 6_2:-71880041 | Msa0927530:CDS |
| AAAAGGTATGAGTAGAGAAA+AGG | 0.430758 | 6_2:-71884718 | None:intergenic |
| GAAGAGTTTGGTGAACTTGA+TGG | 0.454810 | 6_2:-71884640 | Msa0927530:CDS |
| TCTCAAAATTCATGTAATCC+TGG | 0.456999 | 6_2:-71880063 | Msa0927530:CDS |
| AGAGAAATTGGTCTTGCCAT+TGG | 0.465157 | 6_2:-71884604 | Msa0927530:CDS |
| GGCTCAGATAATGCAAATGA+TGG | 0.479987 | 6_2:-71880102 | Msa0927530:intron |
| TTCACCAAACTCTTCATCAA+TGG | 0.480444 | 6_2:+71884648 | Msa0927540:CDS |
| ATTCCAAGTAATGTGCGAAC+AGG | 0.485721 | 6_2:+71880006 | None:intergenic |
| AGTCAAGTCACAAGACAACT+TGG | 0.496990 | 6_2:-71884532 | Msa0927530:CDS |
| ATGTAATCCTGGTTTAGTAA+TGG | 0.505048 | 6_2:-71880052 | Msa0927530:CDS |
| TTGGTCTTGCCATTGGAAGA+AGG | 0.507636 | 6_2:-71884597 | Msa0927530:CDS |
| AATTAGTGAAGAACCTGAAA+GGG | 0.514951 | 6_2:-71884685 | Msa0927530:CDS |
| TCACAAGACAACTTGGAAGA+AGG | 0.553030 | 6_2:-71884525 | Msa0927530:intron |
| TCTAGTTTCTAGTTTCTTTG+GGG | 0.555860 | 6_2:+71884554 | Msa0927540:five_prime_UTR |
| AGATTCGCCATTACTAAACC+AGG | 0.556726 | 6_2:+71880045 | None:intergenic |
| AAATTAGTGAAGAACCTGAA+AGG | 0.589524 | 6_2:-71884686 | Msa0927530:CDS |
| GAGTTTGGTGAACTTGATGG+TGG | 0.607478 | 6_2:-71884637 | Msa0927530:CDS |
| ATGACTCTACCTTCTTCCAA+TGG | 0.609505 | 6_2:+71884588 | Msa0927540:CDS |
| AGTTTGGTGAACTTGATGGT+GGG | 0.618060 | 6_2:-71884636 | Msa0927530:CDS |
| AAATGATGGGTGGTATCCTC+CGG | 0.625013 | 6_2:-71880088 | Msa0927530:CDS |
| TAGTAATGGCGAATCTAAGG+AGG | 0.653029 | 6_2:-71880038 | Msa0927530:CDS |
| GCTCAGATAATGCAAATGAT+GGG | 0.666264 | 6_2:-71880101 | Msa0927530:intron |
| CAGATAATGCAAATGATGGG+TGG | 0.666714 | 6_2:-71880098 | Msa0927530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAATTTTTCTTATAAAT+AGG | + | chr6_2:71880435-71880454 | None:intergenic | 10.0% |
| !!! | ATATTTTTTATAAATAAGAC+CGG | - | chr6_2:71880539-71880558 | Msa0927530:intron | 10.0% |
| !! | TAAAAATTAATTATTTATCG+AGG | - | chr6_2:71880714-71880733 | Msa0927530:intron | 10.0% |
| !!! | TATGTTATTTCAAATAAATT+AGG | + | chr6_2:71881502-71881521 | None:intergenic | 10.0% |
| !! | GAATTAAAAGTAATTAATAT+AGG | - | chr6_2:71882435-71882454 | Msa0927530:intron | 10.0% |
| !!! | TATTTTCTTTTACTTAATAA+TGG | - | chr6_2:71882629-71882648 | Msa0927530:intron | 10.0% |
| !!! | ATTTTCTTTTACTTAATAAT+GGG | - | chr6_2:71882630-71882649 | Msa0927530:intron | 10.0% |
| !!! | TTAAATTAGTTACTTTAAAT+TGG | + | chr6_2:71883069-71883088 | None:intergenic | 10.0% |
| !! | AATTCATCCAAATATTAAAA+AGG | + | chr6_2:71880328-71880347 | None:intergenic | 15.0% |
| !!! | TCTAATAATCACTTTTTTAT+TGG | - | chr6_2:71880817-71880836 | Msa0927530:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr6_2:71881457-71881476 | Msa0927530:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr6_2:71881458-71881477 | Msa0927530:intron | 15.0% |
| !! | AAAACTAAAATAAACATAAG+GGG | - | chr6_2:71881459-71881478 | Msa0927530:intron | 15.0% |
| !!! | TTTTGAGAGAAAAAAAATAT+TGG | + | chr6_2:71881608-71881627 | None:intergenic | 15.0% |
| !!! | ATATTTTATCTCTTTTACAA+TGG | + | chr6_2:71881662-71881681 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAATCTATTTTTT+AGG | + | chr6_2:71882319-71882338 | None:intergenic | 15.0% |
| !! | ATTAAAAGTAAGTTAGTTAT+TGG | - | chr6_2:71882413-71882432 | Msa0927530:intron | 15.0% |
| !!! | TTTTCTTTTACTTAATAATG+GGG | - | chr6_2:71882631-71882650 | Msa0927530:intron | 15.0% |
| !! | TCAAATTAGTATATATGTAA+TGG | + | chr6_2:71882676-71882695 | None:intergenic | 15.0% |
| !!! | TTTTGCTATAAAAATTGAAA+TGG | + | chr6_2:71883165-71883184 | None:intergenic | 15.0% |
| !! | TTTATATATAAAGACTCTAA+AGG | - | chr6_2:71883762-71883781 | Msa0927530:intron | 15.0% |
| !!! | TTTATTTAAGATCAAACATT+TGG | + | chr6_2:71884496-71884515 | Msa0927540:five_prime_UTR | 15.0% |
| !! | GTCATTGTCTATAAAAATAA+GGG | + | chr6_2:71880224-71880243 | None:intergenic | 20.0% |
| !! | AGTCATTGTCTATAAAAATA+AGG | + | chr6_2:71880225-71880244 | None:intergenic | 20.0% |
| !! | CCTATAAATAATATTCTTTC+CGG | + | chr6_2:71880561-71880580 | None:intergenic | 20.0% |
| !! | CGGAAAGAATATTATTTATA+GGG | - | chr6_2:71880559-71880578 | Msa0927530:intron | 20.0% |
| !! | GGAAAGAATATTATTTATAG+GGG | - | chr6_2:71880560-71880579 | Msa0927530:intron | 20.0% |
| !!! | TGAGTTTTACATTCTAAAAA+TGG | + | chr6_2:71880879-71880898 | None:intergenic | 20.0% |
| !! | TTGTTTATAGCATAAAGTAA+TGG | - | chr6_2:71881088-71881107 | Msa0927530:intron | 20.0% |
| !! | ACAAAACAAAATAATGCATT+TGG | - | chr6_2:71881139-71881158 | Msa0927530:intron | 20.0% |
| !!! | GTTTCATTTTTCTTAATAAC+AGG | - | chr6_2:71881396-71881415 | Msa0927530:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr6_2:71881454-71881473 | None:intergenic | 20.0% |
| !!! | TATTTTTAGTTACCTAGTTT+TGG | + | chr6_2:71881694-71881713 | None:intergenic | 20.0% |
| !! | AAAACTAGGTAACTAAAAAT+AGG | - | chr6_2:71881693-71881712 | Msa0927530:intron | 20.0% |
| !!! | AACAAAAGTGTCAATATTTT+TGG | - | chr6_2:71881963-71881982 | Msa0927530:intron | 20.0% |
| !!! | TTATGTTTTAATACACCATT+CGG | - | chr6_2:71882197-71882216 | Msa0927530:intron | 20.0% |
| !! | CATTCAATAAATGATGTATA+TGG | + | chr6_2:71882294-71882313 | None:intergenic | 20.0% |
| !!! | TTTCTTTTACTTAATAATGG+GGG | - | chr6_2:71882632-71882651 | Msa0927530:intron | 20.0% |
| !!! | ACTAATTTGAAATTAAGTGT+AGG | - | chr6_2:71882686-71882705 | Msa0927530:intron | 20.0% |
| !!! | TATCATCAGAGTTAAATTTT+TGG | + | chr6_2:71882899-71882918 | None:intergenic | 20.0% |
| !!! | ATGTTTTACACAAAAAATGT+TGG | - | chr6_2:71883596-71883615 | Msa0927530:intron | 20.0% |
| !! | AGAAAAGTAATAAAAACTGT+GGG | + | chr6_2:71883956-71883975 | None:intergenic | 20.0% |
| !! | TTAAGCTGTTAAATCTTTAT+TGG | - | chr6_2:71884203-71884222 | Msa0927530:intron | 20.0% |
| ! | AGAAGGTAGATTTCAAAAAA+TGG | - | chr6_2:71880190-71880209 | Msa0927530:intron | 25.0% |
| ! | GAAGGTAGATTTCAAAAAAT+GGG | - | chr6_2:71880191-71880210 | Msa0927530:intron | 25.0% |
| !! | ATTTTTATAGACAATGACTG+AGG | - | chr6_2:71880226-71880245 | Msa0927530:intron | 25.0% |
| !! | AACGTGTCCTTTTTAATATT+TGG | - | chr6_2:71880318-71880337 | Msa0927530:intron | 25.0% |
| !! | TATTTGGATGAATTCTGTTT+TGG | - | chr6_2:71880334-71880353 | Msa0927530:intron | 25.0% |
| !!! | CTGTTTTGGTTTAATTTACA+CGG | - | chr6_2:71880348-71880367 | Msa0927530:intron | 25.0% |
| ! | CCGGAAAGAATATTATTTAT+AGG | - | chr6_2:71880558-71880577 | Msa0927530:intron | 25.0% |
| !!! | TTATTAGAGAAAGTGTTGAA+AGG | + | chr6_2:71880805-71880824 | None:intergenic | 25.0% |
| ! | AAAACTCAAATTGATTAGAG+TGG | - | chr6_2:71880891-71880910 | Msa0927530:intron | 25.0% |
| ! | ATGTTAGGGATAATGTTAAA+AGG | - | chr6_2:71880914-71880933 | Msa0927530:intron | 25.0% |
| ! | TAGCATAAAGTAATGGTTAA+TGG | - | chr6_2:71881095-71881114 | Msa0927530:intron | 25.0% |
| ! | CAATCAAATCTTTATTGTTG+AGG | + | chr6_2:71881238-71881257 | None:intergenic | 25.0% |
| ! | GATTATTTAAGTATGCTTGA+TGG | + | chr6_2:71881273-71881292 | None:intergenic | 25.0% |
| ! | AAAAAAAGTCCTTGAAAATC+AGG | - | chr6_2:71881628-71881647 | Msa0927530:intron | 25.0% |
| ! | TATTAGAAGAAACCAAAACT+AGG | - | chr6_2:71881679-71881698 | Msa0927530:intron | 25.0% |
| ! | TTGTCACTCGTAATAAATAA+GGG | + | chr6_2:71882049-71882068 | None:intergenic | 25.0% |
| ! | ATTGTCACTCGTAATAAATA+AGG | + | chr6_2:71882050-71882069 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr6_2:71882255-71882274 | Msa0927530:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr6_2:71882329-71882348 | Msa0927530:intron | 25.0% |
| !!! | AAGTTTTGGTGTTAGATTTT+CGG | + | chr6_2:71882864-71882883 | None:intergenic | 25.0% |
| !! | GGTGTTAGATTAATAAGTTT+TGG | + | chr6_2:71882878-71882897 | None:intergenic | 25.0% |
| !!! | AAAAATTGAAATGGCTCTAA+AGG | + | chr6_2:71883156-71883175 | None:intergenic | 25.0% |
| ! | AAAAGTAATAAAAACTGTGG+GGG | + | chr6_2:71883954-71883973 | None:intergenic | 25.0% |
| ! | GAAAAGTAATAAAAACTGTG+GGG | + | chr6_2:71883955-71883974 | None:intergenic | 25.0% |
| ! | GAGAAAAGTAATAAAAACTG+TGG | + | chr6_2:71883957-71883976 | None:intergenic | 25.0% |
| ! | TATTGCTACCATAGTATAAA+GGG | + | chr6_2:71884166-71884185 | None:intergenic | 25.0% |
| AAATTAGTGAAGAACCTGAA+AGG | - | chr6_2:71880012-71880031 | Msa0927530:CDS | 30.0% | |
| AATTAGTGAAGAACCTGAAA+GGG | - | chr6_2:71880013-71880032 | Msa0927530:CDS | 30.0% | |
| !! | TCTAGTTTCTAGTTTCTTTG+GGG | + | chr6_2:71880147-71880166 | None:intergenic | 30.0% |
| !! | CTCTAGTTTCTAGTTTCTTT+GGG | + | chr6_2:71880148-71880167 | None:intergenic | 30.0% |
| !! | ACTCTAGTTTCTAGTTTCTT+TGG | + | chr6_2:71880149-71880168 | None:intergenic | 30.0% |
| ! | ATAAGTGAAGTGTTCAAGAT+TGG | + | chr6_2:71880594-71880613 | None:intergenic | 30.0% |
| TCTAACAACTAAACTACTTG+TGG | - | chr6_2:71880621-71880640 | Msa0927530:intron | 30.0% | |
| AATTGATTAGAGTGGATGTT+AGG | - | chr6_2:71880899-71880918 | Msa0927530:intron | 30.0% | |
| ATTGATTAGAGTGGATGTTA+GGG | - | chr6_2:71880900-71880919 | Msa0927530:intron | 30.0% | |
| ATAATTTGAGTGATATCAGC+AGG | - | chr6_2:71881043-71881062 | Msa0927530:intron | 30.0% | |
| TAATTTGAGTGATATCAGCA+GGG | - | chr6_2:71881044-71881063 | Msa0927530:intron | 30.0% | |
| ! | TTGTCGATGCATTATTTTCT+TGG | + | chr6_2:71881123-71881142 | None:intergenic | 30.0% |
| !!! | AGAGTCTGTACTGATTTTAA+GGG | + | chr6_2:71881372-71881391 | None:intergenic | 30.0% |
| !!! | TAGAGTCTGTACTGATTTTA+AGG | + | chr6_2:71881373-71881392 | None:intergenic | 30.0% |
| ATTAGGCTTAATTGCATGTT+TGG | + | chr6_2:71881485-71881504 | None:intergenic | 30.0% | |
| TAGGGACAAATAATAAGACA+AGG | - | chr6_2:71881577-71881596 | Msa0927530:intron | 30.0% | |
| GATGTATGTGGTCTATTTAA+TGG | - | chr6_2:71882267-71882286 | Msa0927530:intron | 30.0% | |
| TCTAAAAAATGTACATCCTC+CGG | + | chr6_2:71882351-71882370 | None:intergenic | 30.0% | |
| !! | TTAGATCATTAACTTGTGTC+TGG | - | chr6_2:71882366-71882385 | Msa0927530:intron | 30.0% |
| ! | ATCAATTGACTTAGAACATG+TGG | + | chr6_2:71882471-71882490 | None:intergenic | 30.0% |
| TGTACTAAAAGAATGAGTGT+TGG | - | chr6_2:71882805-71882824 | Msa0927530:intron | 30.0% | |
| TGCAAATTTGCATACGATAA+AGG | - | chr6_2:71883102-71883121 | Msa0927530:intron | 30.0% | |
| TAGCGAAGAGAAAAAGAATT+TGG | + | chr6_2:71883196-71883215 | None:intergenic | 30.0% | |
| AAGCAAATTCAAACAAACCA+AGG | - | chr6_2:71883785-71883804 | Msa0927530:intron | 30.0% | |
| TTTCAACAAGTTCAAATCCT+TGG | + | chr6_2:71883805-71883824 | None:intergenic | 30.0% | |
| AGCTGGTAAAAATAAGGTTA+GGG | + | chr6_2:71884097-71884116 | None:intergenic | 30.0% | |
| CATTTCAGCTGGTAAAAATA+AGG | + | chr6_2:71884103-71884122 | None:intergenic | 30.0% | |
| ! | CTAAAATTGATAGTTGCGTT+TGG | - | chr6_2:71884136-71884155 | Msa0927530:intron | 30.0% |
| CTATTGCTACCATAGTATAA+AGG | + | chr6_2:71884167-71884186 | None:intergenic | 30.0% | |
| TGTAAACAATTCAAAACCCT+TGG | + | chr6_2:71884416-71884435 | None:intergenic | 30.0% | |
| CAACAACAATAATGTAGACT+TGG | + | chr6_2:71884464-71884483 | None:intergenic | 30.0% | |
| !!! | TTGTTTCTGAAAGCTTTTTC+TGG | - | chr6_2:71884561-71884580 | Msa0927530:CDS | 30.0% |
| !! | TGTTTCTGAAAGCTTTTTCT+GGG | - | chr6_2:71884562-71884581 | Msa0927530:CDS | 30.0% |
| ! | TTTTTCTGGGTTTGTGTTTT+TGG | - | chr6_2:71884575-71884594 | Msa0927530:CDS | 30.0% |
| !!! | TTACATGAATTTTGAGACAC+CGG | + | chr6_2:71884632-71884651 | Msa0927540:CDS | 30.0% |
| TCTCAAAATTCATGTAATCC+TGG | - | chr6_2:71884635-71884654 | Msa0927530:CDS | 30.0% | |
| ATGTAATCCTGGTTTAGTAA+TGG | - | chr6_2:71884646-71884665 | Msa0927530:CDS | 30.0% | |
| !! | GAATTTGTTGATTCCCTTTC+AGG | + | chr6_2:71880029-71880048 | None:intergenic | 35.0% |
| TTCTCCATTGATGAAGAGTT+TGG | - | chr6_2:71880046-71880065 | Msa0927530:CDS | 35.0% | |
| TTCACCAAACTCTTCATCAA+TGG | + | chr6_2:71880053-71880072 | None:intergenic | 35.0% | |
| TATAGACAATGACTGAGGAT+AGG | - | chr6_2:71880231-71880250 | Msa0927530:intron | 35.0% | |
| ATAGACAATGACTGAGGATA+GGG | - | chr6_2:71880232-71880251 | Msa0927530:intron | 35.0% | |
| AGTGTTCAAGATTGGAACAT+CGG | + | chr6_2:71880586-71880605 | None:intergenic | 35.0% | |
| CAACTAAACTACTTGTGGAT+CGG | - | chr6_2:71880626-71880645 | Msa0927530:intron | 35.0% | |
| !!! | GTAGTTTTAAGATAGACGTG+TGG | + | chr6_2:71880693-71880712 | None:intergenic | 35.0% |
| TGCTTCATGACATGTCATTA+GGG | + | chr6_2:71880985-71881004 | None:intergenic | 35.0% | |
| TTTGCCAACCAATCTACATA+AGG | - | chr6_2:71881426-71881445 | Msa0927530:intron | 35.0% | |
| TTGCCAACCAATCTACATAA+GGG | - | chr6_2:71881427-71881446 | Msa0927530:intron | 35.0% | |
| !!! | CCAGAAGTTTTAGTTTGTGA+GGG | - | chr6_2:71881836-71881855 | Msa0927530:intron | 35.0% |
| AATGCTAACTTAAGTCCTCA+AGG | - | chr6_2:71882081-71882100 | Msa0927530:intron | 35.0% | |
| AATTCTAAACTTGTGCCTTG+AGG | + | chr6_2:71882099-71882118 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGACCGAA+TGG | + | chr6_2:71882215-71882234 | None:intergenic | 35.0% | |
| ATACCATCTAGTACAAACAG+TGG | + | chr6_2:71882744-71882763 | None:intergenic | 35.0% | |
| !! | GCTACATTTTCCATTTCTAG+AGG | + | chr6_2:71883220-71883239 | None:intergenic | 35.0% |
| TTTCTTGTGCACATGAGATT+GGG | + | chr6_2:71883671-71883690 | None:intergenic | 35.0% | |
| TTCCTTAGAACTTTGACTGT+GGG | + | chr6_2:71883833-71883852 | None:intergenic | 35.0% | |
| ATTCCTTAGAACTTTGACTG+TGG | + | chr6_2:71883834-71883853 | None:intergenic | 35.0% | |
| ATTACAATAACTCACCGAGA+AGG | + | chr6_2:71883867-71883886 | None:intergenic | 35.0% | |
| ATGATAGTTGCAACTTGCAA+AGG | + | chr6_2:71883993-71884012 | None:intergenic | 35.0% | |
| CAGCTGGTAAAAATAAGGTT+AGG | + | chr6_2:71884098-71884117 | None:intergenic | 35.0% | |
| TGATTAACTGACATTTCAGC+TGG | + | chr6_2:71884114-71884133 | None:intergenic | 35.0% | |
| TTGGAGTTCCCTTTATACTA+TGG | - | chr6_2:71884155-71884174 | Msa0927530:intron | 35.0% | |
| ! | TCTTTATTGGCTGTATGTTC+TGG | - | chr6_2:71884216-71884235 | Msa0927530:intron | 35.0% |
| TGGTCTTCAAATACTTCCTA+AGG | - | chr6_2:71884236-71884255 | Msa0927530:intron | 35.0% | |
| GGTCTTCAAATACTTCCTAA+GGG | - | chr6_2:71884237-71884256 | Msa0927530:intron | 35.0% | |
| ! | TTCAGAAGTTTGTGTTTTGC+AGG | - | chr6_2:71884298-71884317 | Msa0927530:intron | 35.0% |
| ATCACAAACAGACACATTAG+AGG | + | chr6_2:71884526-71884545 | Msa0927540:five_prime_UTR | 35.0% | |
| GCTCAGATAATGCAAATGAT+GGG | - | chr6_2:71884597-71884616 | Msa0927530:CDS | 35.0% | |
| GTTTAGTAATGGCGAATCTA+AGG | - | chr6_2:71884657-71884676 | Msa0927530:CDS | 35.0% | |
| ACTTGGAATCAACGAGAATT+TGG | - | chr6_2:71884706-71884725 | Msa0927530:CDS | 35.0% | |
| ! | GAAGAGTTTGGTGAACTTGA+TGG | - | chr6_2:71880058-71880077 | Msa0927530:CDS | 40.0% |
| ! | AGTTTGGTGAACTTGATGGT+GGG | - | chr6_2:71880062-71880081 | Msa0927530:CDS | 40.0% |
| ! | GGGAATCTCTAGAGAGAAAT+TGG | - | chr6_2:71880082-71880101 | Msa0927530:CDS | 40.0% |
| !! | AGAGAAATTGGTCTTGCCAT+TGG | - | chr6_2:71880094-71880113 | Msa0927530:CDS | 40.0% |
| ATGACTCTACCTTCTTCCAA+TGG | + | chr6_2:71880113-71880132 | None:intergenic | 40.0% | |
| AGTCAAGTCACAAGACAACT+TGG | - | chr6_2:71880166-71880185 | Msa0927530:intron | 40.0% | |
| TCACAAGACAACTTGGAAGA+AGG | - | chr6_2:71880173-71880192 | Msa0927530:intron | 40.0% | |
| TAGACAATGACTGAGGATAG+GGG | - | chr6_2:71880233-71880252 | Msa0927530:intron | 40.0% | |
| GAACTATGCTCATGTAACTG+TGG | + | chr6_2:71880388-71880407 | None:intergenic | 40.0% | |
| !! | AGAGAAAGTGTTGAAAGGAG+AGG | + | chr6_2:71880800-71880819 | None:intergenic | 40.0% |
| GTGCTTCATGACATGTCATT+AGG | + | chr6_2:71880986-71881005 | None:intergenic | 40.0% | |
| TTTCGATGTCAAGAGGCTTT+AGG | + | chr6_2:71881195-71881214 | None:intergenic | 40.0% | |
| TAAAGCCTCTTGACATCGAA+AGG | - | chr6_2:71881194-71881213 | Msa0927530:intron | 40.0% | |
| AACTTCCTTTCGATGTCAAG+AGG | + | chr6_2:71881202-71881221 | None:intergenic | 40.0% | |
| TCGACTAACATTTCTGCAAC+TGG | - | chr6_2:71881309-71881328 | Msa0927530:intron | 40.0% | |
| AACATTTCTGCAACTGGCAT+AGG | - | chr6_2:71881315-71881334 | Msa0927530:intron | 40.0% | |
| TGGCATAGGATATTCATCCT+TGG | - | chr6_2:71881329-71881348 | Msa0927530:intron | 40.0% | |
| GGCATAGGATATTCATCCTT+GGG | - | chr6_2:71881330-71881349 | Msa0927530:intron | 40.0% | |
| CTTGAATAATGCTACACCCA+AGG | + | chr6_2:71881349-71881368 | None:intergenic | 40.0% | |
| AGTTGGTCCCTTATGTAGAT+TGG | + | chr6_2:71881437-71881456 | None:intergenic | 40.0% | |
| ACAGTCCATTACATTTGCAG+AGG | - | chr6_2:71881526-71881545 | Msa0927530:intron | 40.0% | |
| CAGTCCATTACATTTGCAGA+GGG | - | chr6_2:71881527-71881546 | Msa0927530:intron | 40.0% | |
| CATTACATTTGCAGAGGGTA+GGG | - | chr6_2:71881532-71881551 | Msa0927530:intron | 40.0% | |
| ! | GAGAGTTCACCTGATTTTCA+AGG | + | chr6_2:71881640-71881659 | None:intergenic | 40.0% |
| CCACTGAGTACAAATTCACT+TGG | + | chr6_2:71881811-71881830 | None:intergenic | 40.0% | |
| CCAAGTGAATTTGTACTCAG+TGG | - | chr6_2:71881808-71881827 | Msa0927530:intron | 40.0% | |
| AGTGAATTTGTACTCAGTGG+CGG | - | chr6_2:71881811-71881830 | Msa0927530:intron | 40.0% | |
| !!! | GCCAGAAGTTTTAGTTTGTG+AGG | - | chr6_2:71881835-71881854 | Msa0927530:intron | 40.0% |
| CCCTCACAAACTAAAACTTC+TGG | + | chr6_2:71881839-71881858 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr6_2:71882332-71882351 | Msa0927530:intron | 40.0% | |
| !! | GATCATTAACTTGTGTCTGG+AGG | - | chr6_2:71882369-71882388 | Msa0927530:intron | 40.0% |
| ! | AAGCAACCGACTCAAACAAT+GGG | - | chr6_2:71883130-71883149 | Msa0927530:intron | 40.0% |
| TAAAGGCCCATTGTTTGAGT+CGG | + | chr6_2:71883139-71883158 | None:intergenic | 40.0% | |
| ! | TCTTCGCTAACCTCTAGAAA+TGG | - | chr6_2:71883207-71883226 | Msa0927530:intron | 40.0% |
| GTAAATCTTGTCCACGTGAT+TGG | + | chr6_2:71883627-71883646 | None:intergenic | 40.0% | |
| GTTTCTTGTGCACATGAGAT+TGG | + | chr6_2:71883672-71883691 | None:intergenic | 40.0% | |
| ! | GAAGTTTGTGTTTTGCAGGA+TGG | - | chr6_2:71884302-71884321 | Msa0927530:intron | 40.0% |
| ! | TTGTGTTTTGCAGGATGGTA+AGG | - | chr6_2:71884307-71884326 | Msa0927530:intron | 40.0% |
| TGGCAGAAACATCTTTCTCA+CGG | + | chr6_2:71884396-71884415 | None:intergenic | 40.0% | |
| ! | TGAGAAAGATGTTTCTGCCA+AGG | - | chr6_2:71884396-71884415 | Msa0927530:intron | 40.0% |
| ! | GAGAAAGATGTTTCTGCCAA+GGG | - | chr6_2:71884397-71884416 | Msa0927530:intron | 40.0% |
| GGCTCAGATAATGCAAATGA+TGG | - | chr6_2:71884596-71884615 | Msa0927530:CDS | 40.0% | |
| ! | CAGATAATGCAAATGATGGG+TGG | - | chr6_2:71884600-71884619 | Msa0927530:CDS | 40.0% |
| AGATTCGCCATTACTAAACC+AGG | + | chr6_2:71884656-71884675 | Msa0927540:CDS | 40.0% | |
| TAGTAATGGCGAATCTAAGG+AGG | - | chr6_2:71884660-71884679 | Msa0927530:CDS | 40.0% | |
| ATTCCAAGTAATGTGCGAAC+AGG | + | chr6_2:71884695-71884714 | Msa0927540:intron | 40.0% | |
| ! | GAGTTTGGTGAACTTGATGG+TGG | - | chr6_2:71880061-71880080 | Msa0927530:CDS | 45.0% |
| !! | TTGGTCTTGCCATTGGAAGA+AGG | - | chr6_2:71880101-71880120 | Msa0927530:intron | 45.0% |
| ATACAAGAACGTGTGAGGAG+AGG | - | chr6_2:71880258-71880277 | Msa0927530:intron | 45.0% | |
| GATATCAGCAGGGATCAACT+AGG | - | chr6_2:71881054-71881073 | Msa0927530:intron | 45.0% | |
| GGTCCCTTATGTAGATTGGT+TGG | + | chr6_2:71881433-71881452 | None:intergenic | 45.0% | |
| CCTACCCTCTGCAAATGTAA+TGG | + | chr6_2:71881534-71881553 | None:intergenic | 45.0% | |
| CCATTACATTTGCAGAGGGT+AGG | - | chr6_2:71881531-71881550 | Msa0927530:intron | 45.0% | |
| CACTTGGATGAACAGTCAGA+TGG | + | chr6_2:71881795-71881814 | None:intergenic | 45.0% | |
| AGCCACTTACATCCTAGTGT+GGG | + | chr6_2:71882718-71882737 | None:intergenic | 45.0% | |
| CCATCTAGTACAAACAGTGG+CGG | + | chr6_2:71882741-71882760 | None:intergenic | 45.0% | |
| ! | GAAGCAACCGACTCAAACAA+TGG | - | chr6_2:71883129-71883148 | Msa0927530:intron | 45.0% |
| CTCCCACAGTCAAAGTTCTA+AGG | - | chr6_2:71883828-71883847 | Msa0927530:intron | 45.0% | |
| AATAACTCACCGAGAAGGCT+TGG | + | chr6_2:71883862-71883881 | None:intergenic | 45.0% | |
| CAATGCGCAAATAAGCCCTT+AGG | + | chr6_2:71884255-71884274 | None:intergenic | 45.0% | |
| GGCAGAAACATCTTTCTCAC+GGG | + | chr6_2:71884395-71884414 | None:intergenic | 45.0% | |
| !! | AAATGATGGGTGGTATCCTC+CGG | - | chr6_2:71884610-71884629 | Msa0927530:CDS | 45.0% |
| !!! | CATGAATTTTGAGACACCGG+AGG | + | chr6_2:71884629-71884648 | Msa0927540:CDS | 45.0% |
| !! | TAATAAAAAGAAAATAATAT+TGG | + | chr6_2:71881559-71881578 | None:intergenic | 5.0% |
| !!! | AATATTATTTTCTTTTTATT+AGG | - | chr6_2:71881558-71881577 | Msa0927530:intron | 5.0% |
| !!! | ATATTATTTTCTTTTTATTA+GGG | - | chr6_2:71881559-71881578 | Msa0927530:intron | 5.0% |
| !!! | AATAATAAATTTTCAATTTT+TGG | + | chr6_2:71881900-71881919 | None:intergenic | 5.0% |
| !! | AAAATTGAAAATTTATTATT+TGG | - | chr6_2:71881900-71881919 | Msa0927530:intron | 5.0% |
| !! | AAATTGAAAATTTATTATTT+GGG | - | chr6_2:71881901-71881920 | Msa0927530:intron | 5.0% |
| GGGACATACAAGAACGTGTG+AGG | - | chr6_2:71880253-71880272 | Msa0927530:intron | 50.0% | |
| TGCCCACACTAGGATGTAAG+TGG | - | chr6_2:71882713-71882732 | Msa0927530:intron | 50.0% | |
| GAGCCACTTACATCCTAGTG+TGG | + | chr6_2:71882719-71882738 | None:intergenic | 50.0% | |
| CCGCCACTGTTTGTACTAGA+TGG | - | chr6_2:71882738-71882757 | Msa0927530:intron | 50.0% | |
| TGTTGGCAAAGCCAATCACG+TGG | - | chr6_2:71883613-71883632 | Msa0927530:intron | 50.0% | |
| GAATCCAAGCCAAGCCTTCT+CGG | - | chr6_2:71883850-71883869 | Msa0927530:intron | 50.0% | |
| GCTCCTGTTCGCACATTACT+TGG | - | chr6_2:71884689-71884708 | Msa0927530:CDS | 50.0% | |
| TGTAGGCACATGCCCACACT+AGG | - | chr6_2:71882703-71882722 | Msa0927530:intron | 55.0% | |
| CTCACCGAGAAGGCTTGGCT+TGG | + | chr6_2:71883857-71883876 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 71879987 | 71884733 | 71879987 | ID=Msa0927530;Name=Msa0927530 |
| chr6_2 | mRNA | 71879987 | 71884733 | 71879987 | ID=Msa0927530-mRNA-1;Parent=Msa0927530;Name=Msa0927530-mRNA-1;_AED=0.97;_eAED=1.00;_QI=0|0|0|0.5|1|1|2|0|112 |
| chr6_2 | exon | 71884526 | 71884733 | 71884526 | ID=Msa0927530-mRNA-1:exon:12097;Parent=Msa0927530-mRNA-1 |
| chr6_2 | exon | 71879987 | 71880117 | 71879987 | ID=Msa0927530-mRNA-1:exon:12096;Parent=Msa0927530-mRNA-1 |
| chr6_2 | CDS | 71884526 | 71884733 | 71884526 | ID=Msa0927530-mRNA-1:cds;Parent=Msa0927530-mRNA-1 |
| chr6_2 | CDS | 71879987 | 71880117 | 71879987 | ID=Msa0927530-mRNA-1:cds;Parent=Msa0927530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
