AlfalfaGEDB | Msa0928210

M. sativa cultivar zhongmu-4 / Msa0928210

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928210	XP_003619618.2	59.623	265	72	4	1	256	1	239	1.03e-78	277
Msa0928210	XP_003619618.2	90.179	672	10	5	135	750	13	684	0.0	1201

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928210	sp\|Q9SHI2\|Y1723_ARATH	29.719	784	424	27	52	740	318	1069	1.98e-66	242
Msa0928210	sp\|Q9SHI2\|Y1723_ARATH	33.083	399	195	11	3	336	6	397	2.74e-38	157
Msa0928210	sp\|Q9SHI2\|Y1723_ARATH	32.547	212	125	2	150	343	25	236	3.84e-20	99.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081090	Msa0928210	0.808321	3.280531e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928210	MtrunA17_Chr6g0476611	90.179	672	10	5	135	750	13	684	0.0	1201
Msa0928210	MtrunA17_Chr6g0476611	59.623	265	72	4	1	256	1	239	9.44e-83	277
Msa0928210	MtrunA17_Chr7g0229941	54.491	668	243	9	136	745	3	667	0.0	683
Msa0928210	MtrunA17_Chr7g0229941	40.310	258	111	4	12	256	3	230	2.83e-41	160
Msa0928210	MtrunA17_Chr5g0398741	50.512	683	251	10	134	743	7	675	0.0	637
Msa0928210	MtrunA17_Chr1g0165141	27.964	776	450	19	63	744	367	1127	3.79e-69	246
Msa0928210	MtrunA17_Chr1g0165141	32.113	355	206	11	7	335	14	359	5.33e-29	124
Msa0928210	MtrunA17_Chr1g0165141	32.919	322	181	6	61	347	125	446	5.02e-28	121
Msa0928210	MtrunA17_Chr1g0165141	32.468	308	176	7	63	351	295	589	1.58e-27	119
Msa0928210	MtrunA17_Chr1g0165141	31.441	229	130	7	127	343	10	223	2.13e-15	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928210	AT5G51560.1	60.763	655	196	9	152	750	31	680	0.0	790
Msa0928210	AT5G51560.1	41.277	235	102	5	30	255	31	238	1.55e-42	165
Msa0928210	AT2G45340.1	54.394	660	234	10	156	748	30	689	0.0	669
Msa0928210	AT2G45340.1	41.810	232	99	3	34	255	30	235	3.19e-37	149
Msa0928210	AT4G22730.1	51.194	670	252	12	146	746	21	684	0.0	635
Msa0928210	AT4G22730.2	49.906	533	189	11	132	591	2	529	1.35e-158	470
Msa0928210	AT1G17230.1	29.719	784	424	27	52	740	318	1069	2.01e-67	242
Msa0928210	AT1G17230.1	33.083	399	195	11	3	336	6	397	2.79e-39	157
Msa0928210	AT1G17230.1	32.547	212	125	2	150	343	25	236	3.90e-21	99.8
Msa0928210	AT1G17230.2	29.719	784	424	27	52	740	318	1069	3.03e-67	241

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Find 153 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGATGTTTACGCTTT+TGG	0.223225	6_2:+73276254	Msa0928210:CDS
AAAAGCTAATCCTTCAGTTA+AGG	0.412636	6_2:-73276647	None:intergenic
AAACTCTAGTTGACCATTCA+AGG	0.400679	6_2:-73275108	None:intergenic
AAATTCCTACTATCAGCCAA+AGG	0.605608	6_2:-73274719	None:intergenic
AACTTTAGTGCAACGTATAA+AGG	0.353842	6_2:+73274845	Msa0928210:CDS
AACTTTATATCTGCAGTTTC+CGG	0.237990	6_2:-73274440	None:intergenic
AAGTCAAGTTTGGATCCACA+AGG	0.645582	6_2:+73266860	Msa0928210:CDS
AAGTCAAGTTTGGATCCACA+AGG	0.645582	6_2:+73272213	Msa0928210:CDS
AATCCGGTGCTCTCGGATTC+TGG	0.283847	6_2:+73276125	Msa0928210:CDS
AATCGATCAGCGACAGAATC+CGG	0.392837	6_2:+73276109	Msa0928210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTCTTCATGGAAAATTCA+TGG	+	chr6_2:73266890-73266909	Msa0928210:CDS	30.0%
CTTCAAAAGATTCATCACAA+GGG	-	chr6_2:73266919-73266938	None:intergenic	30.0%
AATGTTTCATTGCAAGGAAA+AGG	+	chr6_2:73266971-73266990	Msa0928210:CDS	30.0%
TTTGTATGGTGATATACCTA+AGG	+	chr6_2:73267066-73267085	Msa0928210:CDS	30.0%
ATAGTAATACCAATCTCAGA+AGG	-	chr6_2:73267157-73267176	None:intergenic	30.0%
GTTCACTCATAAGTAAAATG+TGG	-	chr6_2:73267270-73267289	None:intergenic	30.0%
AAGACAAACTAACGTCTAAA+CGG	+	chr6_2:73267392-73267411	Msa0928210:intron	30.0%
AACAATAAAATCACATCCGT+TGG	+	chr6_2:73267682-73267701	Msa0928210:intron	30.0%
TGAGGTTAATTCAGTTTGTA+AGG	+	chr6_2:73267829-73267848	Msa0928210:intron	30.0%
TGCAAATAAACTTCAATGCT+GGG	-	chr6_2:73267954-73267973	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	73266749	73276793	73266749	ID=Msa0928210;Name=Msa0928210
chr6_2	mRNA	73266749	73276793	73266749	ID=Msa0928210-mRNA-1;Parent=Msa0928210;Name=Msa0928210-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.22\|0.1\|1\|0.22\|0.1\|10\|279\|750
chr6_2	exon	73266749	73266911	73266749	ID=Msa0928210-mRNA-1:exon:12482;Parent=Msa0928210-mRNA-1
chr6_2	exon	73266939	73267176	73266939	ID=Msa0928210-mRNA-1:exon:12483;Parent=Msa0928210-mRNA-1
chr6_2	exon	73272137	73272264	73272137	ID=Msa0928210-mRNA-1:exon:12484;Parent=Msa0928210-mRNA-1
chr6_2	exon	73272292	73272540	73272292	ID=Msa0928210-mRNA-1:exon:12485;Parent=Msa0928210-mRNA-1
chr6_2	exon	73273248	73273478	73273248	ID=Msa0928210-mRNA-1:exon:12486;Parent=Msa0928210-mRNA-1
chr6_2	exon	73274282	73274523	73274282	ID=Msa0928210-mRNA-1:exon:12487;Parent=Msa0928210-mRNA-1
chr6_2	exon	73274599	73274762	73274599	ID=Msa0928210-mRNA-1:exon:12488;Parent=Msa0928210-mRNA-1
chr6_2	exon	73274778	73274908	73274778	ID=Msa0928210-mRNA-1:exon:12489;Parent=Msa0928210-mRNA-1
chr6_2	exon	73274930	73275154	73274930	ID=Msa0928210-mRNA-1:exon:12490;Parent=Msa0928210-mRNA-1
chr6_2	exon	73276033	73276793	73276033	ID=Msa0928210-mRNA-1:exon:12491;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73266749	73266911	73266749	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73266939	73267176	73266939	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73272137	73272264	73272137	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73272292	73272540	73272292	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73273248	73273478	73273248	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73274282	73274523	73274282	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73274599	73274762	73274599	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73274778	73274908	73274778	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73274930	73275154	73274930	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	CDS	73276033	73276514	73276033	ID=Msa0928210-mRNA-1:cds;Parent=Msa0928210-mRNA-1
chr6_2	three_prime_UTR	73276515	73276793	73276515	ID=Msa0928210-mRNA-1:three_prime_utr;Parent=Msa0928210-mRNA-1

Gene Sequence

>Msa0928210

ATGGAGTGTTCACTGTTTATGTTTATGTTTCTTAGTTTTGCTGTAATGTTTTTGGTTTTAAACTCAAAAAGTGTACTTGGAAATGCTGAACTAAAAGCACTTTTGGATTTAAAGTCAAGTTTGGATCCACAAGGACATTTTTTGTCTTCATGGAAAATTCATGGTGTAGCTTGTAATGAAAAGGGTCAAGTTGCAAATGTTTCATTGCAAGGAAAAGGACTTTCTGGTAAATTATCACCAGCCATCGGTGATTTGAAGCATTTGACAGGATTGTACTTGCATTACAATTCTTTGTATGGTGATATACCTAAGGAAATTGCTAACTTGACTATGCTTAGTGATTTGTATTTGAATGTTAATCATTTGTCTGGTGAAATACCTTCTGAGATTGGTATTACTATTTTTTCTGTAATGTTTTTGGTTTTAAACTCAAAAAGTGTACTTGGAAATGCTGAACTAAAAGCACTTTTGGATTTAAAGTCAAGTTTGGATCCACAAGGACATTTTTTGTCTTCATGGAAAATTCATGGTGTAGCTTGTAATGAAAAGGGTCAAGTAGCAAATGTTTCATTGCAAGGAAAAGGACTTTCTGGTAAATTATCACCAGCCATTGGTGATTTGAAGCATTTGACAGGATTGTACTTGCATTACAATTCTTTGTATGGTGATATACCTAAGGAAATTGCTAACTTGACTATGCTTAATGATTTGTATTTGAATGTTAATCATTTGTCTGGTGAAATACCTTCTGAGATTGGTAAAATGGAGAGTCTTCAAGGAAGCATACCTACTCAGCTTGGTGATCTGAAAAAGCTTAGTGTTCTTGCTCTACAGTCAAACAAGTTAGCTGGAGCTATACCTGCTAGTCTAGGTGACTTAGGAATGTTGATGAGGCTAGATTTGAGCTCTAATAATCTTTTTGGTTCAATTCCAACTAAACTAGCTGATGTTCCTTTTCTTCAAGTTTTGGATGTTCACAACAATACCCTTTCTGGCAATATACCTCCTGGTCTCAAGAGACTCGATGATAAATTTGTGTACGAATACAATTTGGGATTATGTGGAGTTGGATTTTCATCTTTGAAAGCCTGCAATGCTTCAGATCATGTCAATCCAAACAGACCTGAACCTTATGGAGCAGGAGTTGGTGCCATGTCAAAGGAAATCCCGGAAACTGCAGATATAAAGTTGCCTTGCAATACAACTCGGTGTCAAAACTCATCAAAATCCAAAAAAACAGCATCTATTACTCAAAAGCTTGGAAGTGCATTTGATATCACTGAAAGCCGTCTAAGTACCGACCAAACCAAGGGAATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAATATGCTAATGGATGGGACCCTTTGGCTGATAGTAGGAATTTCAATGGAGATAAGCAAGATATGTTCAACTTGGAAGAAGTGGAATCGGCGACTCAGTATTTCTCGGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACGTATAAAGGAGTTTTAAGAGATGGATCGATTGTTGCTATCAAGAGCATAAACGAAGGCGAATTTCTCAAAGGGTTGAACATTTTGACATCATTGAGGAATGATAATTTGGTGAGGTTGAGAGGATTTTGTTGCTCGAGGGGACGAGGTGAATGCTTCTTGGTTTACGATTTTGTTTCTAATGGAAATTTGTCTCAATACCTTGATGTGAAGGAAGGTGAAGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTAAAAGGAATTGCTAAAGGCATATCATATTTGCATGCATACAAAGCAAACAAACCAGCTCTTGTTCACCAAAACATCTCAGCAGAGAAAGTGCTAATCGATCAGCGACAGAATCCGGTGCTCTCGGATTCTGGCCTATATAAGCTTCTCACCAACGACATTGTCTTCTCTTCACTAAAGGGCAGTGCTGCAAAGGGTTACCTTGCTCCCGAATACACTACAACAGGCCGGTTCACCGATAAAAGCGATGTTTACGCTTTTGGGATCCTTCTTTTCCAGATACTCACCGGGAAGCATAAGATCACTAGCTCATTGCGCCTCGCAGCAGAATCCTTCAAGTTCCAAGAATTCATTGACCAGAATCTCCATGGACGATTCTTCGAATATGAAGCTGCAAAACTAGCAAGAATGGCAATACTTTGTTCCCACGACTCTCCTTTCGAGAGGCCAACCATGGAAGCTATTGTTCAAGAACTTGGCAATTGTAGTAGTTGTCTTTGA

Protein sequence

>Msa0928210

MECSLFMFMFLSFAVMFLVLNSKSVLGNAELKALLDLKSSLDPQGHFLSSWKIHGVACNEKGQVANVSLQGKGLSGKLSPAIGDLKHLTGLYLHYNSLYGDIPKEIANLTMLSDLYLNVNHLSGEIPSEIGITIFSVMFLVLNSKSVLGNAELKALLDLKSSLDPQGHFLSSWKIHGVACNEKGQVANVSLQGKGLSGKLSPAIGDLKHLTGLYLHYNSLYGDIPKEIANLTMLNDLYLNVNHLSGEIPSEIGKMESLQGSIPTQLGDLKKLSVLALQSNKLAGAIPASLGDLGMLMRLDLSSNNLFGSIPTKLADVPFLQVLDVHNNTLSGNIPPGLKRLDDKFVYEYNLGLCGVGFSSLKACNASDHVNPNRPEPYGAGVGAMSKEIPETADIKLPCNTTRCQNSSKSKKTASITQKLGSAFDITESRLSTDQTKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDKQDMFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSIVAIKSINEGEFLKGLNILTSLRNDNLVRLRGFCCSRGRGECFLVYDFVSNGNLSQYLDVKEGEGEVLEWSTRVSIVKGIAKGISYLHAYKANKPALVHQNISAEKVLIDQRQNPVLSDSGLYKLLTNDIVFSSLKGSAAKGYLAPEYTTTGRFTDKSDVYAFGILLFQILTGKHKITSSLRLAAESFKFQEFIDQNLHGRFFEYEAAKLARMAILCSHDSPFERPTMEAIVQELGNCSSCL*