AlfalfaGEDB | Msa0081090

M. sativa cultivar zhongmu-4 / Msa0081090

KEGG: K01885
GO: GO:0002181 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004818 GO:0004827 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006424 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010876 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0015909 GO:0016020 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0017148 GO:0019222 GO:0019538 GO:0019752 GO:0019899 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032868 GO:0032869 GO:0032870 GO:0032991 GO:0033036 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0034645 GO:0034660 GO:0035613 GO:0042221 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043434 GO:0043436 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044539 GO:0045087 GO:0046483 GO:0046872 GO:0046914 GO:0046942 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0097452 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1990904 GO:2000112 GO:2000113
PFAM: PF00749.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081090	XP_003591273.1	91.379	754	44	3	1	752	1	735	0.0	1405

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081090	sp\|O82462\|SYEC_ARATH	69.179	743	193	8	8	746	6	716	0.0	1059

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081090	G7IAE3	91.379	754	44	3	1	752	1	735	0.0	1405

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0081090	0.861830	7.788523e-64	-8.615850e-47
Msa0002580	Msa0081090	0.809859	1.536493e-50	-8.615850e-47
Msa0005890	Msa0081090	0.825583	4.331923e-54	-8.615850e-47
Msa0008110	Msa0081090	0.801283	9.687212e-49	-8.615850e-47
Msa0021500	Msa0081090	0.802003	6.894880e-49	-8.615850e-47
Msa0027820	Msa0081090	0.825186	5.376875e-54	-8.615850e-47
Msa0028420	Msa0081090	0.844680	6.507123e-59	-8.615850e-47
Msa0032090	Msa0081090	0.817695	2.885179e-52	-8.615850e-47
Msa0032430	Msa0081090	0.855947	4.481824e-62	-8.615850e-47
Msa0032920	Msa0081090	-0.807126	5.886496e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081090	MtrunA17_Chr1g0193431	91.379	754	44	3	1	752	1	735	0.0	1405
Msa0081090	MtrunA17_Chr1g0209631	32.072	502	324	8	242	727	269	769	6.69e-68	239
Msa0081090	MtrunA17_Chr8g0337411	26.457	223	133	7	244	445	55	267	1.68e-11	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081090	AT5G26710.1	69.179	743	193	8	8	746	6	716	0.0	1059
Msa0081090	AT1G25350.1	31.349	504	326	9	242	727	269	770	4.94e-65	231
Msa0081090	AT1G25350.2	29.586	507	336	9	242	727	269	775	1.87e-56	207

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Find 201 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCAGCCAGTCGTCA+AGG	0.611058	1_2:-59611446	Msa0081090:CDS
AAAAGATGTTGAGACGTTGG+GGG	0.753350	1_2:-59611158	Msa0081090:CDS
AAAATCTCAATCTCATGGAA+TGG	0.472161	1_2:-59610298	Msa0081090:CDS
AAAATGGAAAAGTTGAATCA+TGG	0.436219	1_2:-59610589	Msa0081090:CDS
AAAATTAATTAGCCAGGGTA+AGG	0.515011	1_2:-59611074	Msa0081090:CDS
AAATCTCAATCTCATGGAAT+GGG	0.463289	1_2:-59610297	Msa0081090:CDS
AAATGATTGCAGGATCAGAG+AGG	0.689429	1_2:-59610943	Msa0081090:CDS
AAATGATTTAGAAGCTTGCC+AGG	0.451118	1_2:-59613342	Msa0081090:intron
AAATGGAAAAGTTGAATCAT+GGG	0.512472	1_2:-59610588	Msa0081090:CDS
AACAAATGCTCCACGAAATT+TGG	0.200717	1_2:+59613415	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTGCAATTATTCGCAAC+AGG	-	chr1_2:59608744-59608763	Msa0081090:CDS	30.0%
TTTGACTAAAACATCTAACC+TGG	+	chr1_2:59608862-59608881	None:intergenic	30.0%
TGAATAAGTGATGTTGTCTA+AGG	-	chr1_2:59608915-59608934	Msa0081090:CDS	30.0%
TCTATAATAAGCTGCAAACA+TGG	+	chr1_2:59608963-59608982	None:intergenic	30.0%
GCTTAATATATACAAGGTTC+AGG	-	chr1_2:59609003-59609022	Msa0081090:intron	30.0%
TATTTACTGCTTGTTTGGAT+TGG	+	chr1_2:59609635-59609654	None:intergenic	30.0%
AGCAATATTTACTGCTTGTT+TGG	+	chr1_2:59609640-59609659	None:intergenic	30.0%
ATCGAAAATAGTTTCAAGAC+TGG	+	chr1_2:59609731-59609750	None:intergenic	30.0%
TCCTTGGTTTCTTTCAAAAT+AGG	-	chr1_2:59609757-59609776	Msa0081090:intron	30.0%
AATAGGAGAGTGATAGTTTA+AGG	-	chr1_2:59609774-59609793	Msa0081090:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	59608432	59613773	59608432	ID=Msa0081090;Name=Msa0081090
chr1_2	mRNA	59608432	59613773	59608432	ID=Msa0081090-mRNA-1;Parent=Msa0081090;Name=Msa0081090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=115\|0.66\|0.85\|0.85\|1\|1\|7\|305\|752
chr1_2	exon	59608432	59608955	59608432	ID=Msa0081090-mRNA-1:exon:19350;Parent=Msa0081090-mRNA-1
chr1_2	exon	59609863	59610330	59609863	ID=Msa0081090-mRNA-1:exon:19349;Parent=Msa0081090-mRNA-1
chr1_2	exon	59610505	59611627	59610505	ID=Msa0081090-mRNA-1:exon:19348;Parent=Msa0081090-mRNA-1
chr1_2	exon	59611713	59611764	59611713	ID=Msa0081090-mRNA-1:exon:19347;Parent=Msa0081090-mRNA-1
chr1_2	exon	59612041	59612194	59612041	ID=Msa0081090-mRNA-1:exon:19346;Parent=Msa0081090-mRNA-1
chr1_2	exon	59613343	59613439	59613343	ID=Msa0081090-mRNA-1:exon:19345;Parent=Msa0081090-mRNA-1
chr1_2	exon	59613513	59613773	59613513	ID=Msa0081090-mRNA-1:exon:19344;Parent=Msa0081090-mRNA-1
chr1_2	five_prime_UTR	59613659	59613773	59613659	ID=Msa0081090-mRNA-1:five_prime_utr;Parent=Msa0081090-mRNA-1
chr1_2	CDS	59613513	59613658	59613513	ID=Msa0081090-mRNA-1:cds;Parent=Msa0081090-mRNA-1
chr1_2	CDS	59613343	59613439	59613343	ID=Msa0081090-mRNA-1:cds;Parent=Msa0081090-mRNA-1
chr1_2	CDS	59612041	59612194	59612041	ID=Msa0081090-mRNA-1:cds;Parent=Msa0081090-mRNA-1
chr1_2	CDS	59611713	59611764	59611713	ID=Msa0081090-mRNA-1:cds;Parent=Msa0081090-mRNA-1
chr1_2	CDS	59610505	59611627	59610505	ID=Msa0081090-mRNA-1:cds;Parent=Msa0081090-mRNA-1
chr1_2	CDS	59609863	59610330	59609863	ID=Msa0081090-mRNA-1:cds;Parent=Msa0081090-mRNA-1
chr1_2	CDS	59608737	59608955	59608737	ID=Msa0081090-mRNA-1:cds;Parent=Msa0081090-mRNA-1
chr1_2	three_prime_UTR	59608432	59608736	59608432	ID=Msa0081090-mRNA-1:three_prime_utr;Parent=Msa0081090-mRNA-1

Gene Sequence

>Msa0081090

ATGGATATCAAAATCAAAACCCTTTCCTTCTCCGCCGCCGCGCCACCGTTAGCGGGGATCGCCGCATCCAAACTCGCCGGATTCTCTCCATCCATCGACACCTCCCTTCCTCCTGATTCCGTCCCCACATTTCTCTTGTCCAACGGGTCCAAATTTCGTGGAGCATTTGTTCTTCTGCGTCACATTGGAAGAACTGCAACCCTTCCTAATTTCTATGGCCAAAATGATTTAGAAGCTTGCCAGATTGATGAATTGCTAGAGTATGCACCTGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTTATTCGTTATCAATCGCAGATCTAGCTATCTGGGCAGGTCTTGCAGTCTGTGGCTCTGTGCAGCTAAATTACTCTATCTTCTATTTCTCTATTCTTTGGTGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCAATAGTTGCAGAACATGGTACTGCTTAAACGAAGTCACAGCAACATATATTGGCAAAAAAGGAGTGGGAGAGCCATCTGCAACCAAGCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTAAAGAATGTGAATGGGGATGTTTCTGATAACATTAAGGGAGGAGGCAAGCCTTCGGCAGAGATAGATCTTCCAGCTGCTGAAGTTGGAAAAGTTCGCTTGCGGTTTGCACCTGAACCCAGTGGCTATCTTCACATTGGACACTCAAAAGCAGCTCTGTTGAACAAGTATTTTGCTGAACGATACCAAGGTCAGGTTATTTTGCGTTTCGATGATACAAATCCTGCTAAAGAAAGTAATGAATTTGTGGACAATTTGATAAAAGATGTTGAGACGTTGGGGGTCAAATATGAAAGAATTACATATACATCAGATTACTTCCCTGAGTTGATGGAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCGTATGTTGATGACACTCCACGTGAACAAATGCAAAAGGAGAGAATGGATGGCATAGAATCTAAATGCAGAAACCATAGTGTTGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGTTTGCAGTGTTGTGTCCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAATCCAATGCCTCATCATAGAATTGGGTCCAAGTATAAAGTGTATCCAACTTATGATTTTGCTTGTCCATTTGTTGATGCTCATGAAGGTATCACTCATGCCCTTCGGTCAAGTGAATACCATGATCGTAATGCTCAGTATTACAGGATTCAAGCGGACATGGGCGTTACGAGAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTCTATGGTTTGTCCAAAATGGAAAAGTTGAATCATGGGATGATCCACGATTTCCTACAGTGCAAGGAATTGTGCGTAGAGGCTTGAAAATTGAAGCTCTAATCCAATTTATTGTTGAACAAGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATCAATAAGAAGATTATTGACCCTGTATGTCCCAGACACACTGCTGTCATTGCGGATAGACGTGTATTGTTAACCCTCACTGATGGTCCTGAGAAATCATTTGTCCGCATCATACCTAGGCACAAAAAGTATGAAGCTGCTGGGAATAAAGCTACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCTGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAGTAGAGAAGGACCAAGTTGGGAATGTCAAAGGGTTAAGTGGTGTTTTACATCTTGAAGGATCTGTGAAGACCACAAAACTGAAGCTCACTTGGCTACCTGAGTTAGATGAATTAGTTAGCCTGACATTGATGGAGTTTGATTACCTCATTACGAAGAAAAAGCTTGAGGAAGGAGAGGATTTCATTGATGTGCTTAACCCTTGCACAAAAAAGGAGACTCTAGCATATGGAGACTCCAATATGCGAAATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCGTCCGGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA

Protein sequence

>Msa0081090

MDIKIKTLSFSAAAPPLAGIAASKLAGFSPSIDTSLPPDSVPTFLLSNGSKFRGAFVLLRHIGRTATLPNFYGQNDLEACQIDELLEYAPVLSSGPAFENGCKYIDDYLEKRTFLVGYSLSIADLAIWAGLAVCGSVQLNYSIFYFSILWCWKEMGKLEEIKEISKSCTMVQFNSCRTWYCLNEVTATYIGKKGVGEPSATKPKDQPVVKDKVKNVNGDVSDNIKGGGKPSAEIDLPAAEVGKVRLRFAPEPSGYLHIGHSKAALLNKYFAERYQGQVILRFDDTNPAKESNEFVDNLIKDVETLGVKYERITYTSDYFPELMELAEKLISQGKAYVDDTPREQMQKERMDGIESKCRNHSVEENLKLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPMPHHRIGSKYKVYPTYDFACPFVDAHEGITHALRSSEYHDRNAQYYRIQADMGVTRVLIYEFSRLNMVYTLLSKRKLLWFVQNGKVESWDDPRFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADRRVLLTLTDGPEKSFVRIIPRHKKYEAAGNKATTYTKRIWIDYADAESVSAGEEVTLMDWGNAIVKEVEKDQVGNVKGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYLITKKKLEEGEDFIDVLNPCTKKETLAYGDSNMRNLKRGEVLQLERKGYFRCDVPFVRPSKPIVLFAIPDGRQQTSLK*