AlfalfaGEDB | Msa0928520

M. sativa cultivar zhongmu-4 / Msa0928520

KEGG: K00924|K08959|K08960
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928520	PNY12742.1	90.985	477	24	2	1	459	1	476	0.0	892

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928520	sp\|Q93Z18\|CKL3_ARATH	71.395	423	103	6	1	416	1	412	0.0	615

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0840210	Msa0928520	0.808333	3.260350e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928520	MtrunA17_Chr6g0486611	99.762	421	1	0	1	421	1	421	0.0	875
Msa0928520	MtrunA17_Chr8g0390211	80.476	420	79	3	1	419	1	418	0.0	699
Msa0928520	MtrunA17_Chr4g0071031	72.973	333	89	1	1	333	1	332	0.0	519
Msa0928520	MtrunA17_Chr3g0140071	64.286	406	135	4	1	398	1	404	0.0	517
Msa0928520	MtrunA17_Chr2g0329981	63.246	419	138	7	1	411	1	411	0.0	516
Msa0928520	MtrunA17_Chr1g0166821	75.625	320	75	2	1	317	2	321	0.0	516
Msa0928520	MtrunA17_Chr1g0183631	76.299	308	73	0	1	308	1	308	1.21e-176	504
Msa0928520	MtrunA17_Chr8g0342821	59.333	450	159	9	1	440	1	436	1.69e-176	504
Msa0928520	MtrunA17_Chr1g0187571	72.812	320	84	2	1	317	2	321	1.53e-174	499
Msa0928520	MtrunA17_Chr1g0146151	70.948	327	94	1	1	327	1	326	5.59e-174	496

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928520	AT4G28880.3	71.395	423	103	6	1	416	1	412	0.0	615
Msa0928520	AT4G28880.2	71.395	423	103	6	1	416	1	412	0.0	615
Msa0928520	AT4G28880.1	71.395	423	103	6	1	416	1	412	0.0	615
Msa0928520	AT4G28880.4	71.395	423	103	6	1	416	1	412	0.0	615
Msa0928520	AT4G28860.1	71.801	422	102	7	1	416	1	411	0.0	605
Msa0928520	AT4G28860.2	79.339	363	68	3	1	358	1	361	0.0	600
Msa0928520	AT4G26100.1	72.000	325	90	1	1	325	1	324	2.00e-177	506
Msa0928520	AT5G57015.1	65.574	366	120	3	1	363	1	363	1.01e-175	501
Msa0928520	AT1G72710.1	69.275	345	103	3	1	345	1	342	7.92e-175	500
Msa0928520	AT2G19470.1	68.343	338	97	3	1	329	1	337	5.57e-174	497

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Find 161 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGGATAACTTTCTCA+TGG	0.575825	6_2:+74040632	Msa0928520:CDS
AAACATGGAGCTGCATATTA+TGG	0.224614	6_2:+74043062	Msa0928520:CDS
AAACCGGATAACTTTCTCAT+GGG	0.561522	6_2:+74040633	Msa0928520:CDS
AAATCATATCTCTTCATACG+GGG	0.663424	6_2:+74044298	Msa0928520:three_prime_UTR
AAATGAATTCAACACGCGGA+CGG	0.563130	6_2:-74038618	None:intergenic
AAATTGGTCCTTCAAGTAGT+CGG	0.607497	6_2:+74042853	Msa0928520:CDS
AACATGGAGCTGCATATTAT+GGG	0.410482	6_2:+74043063	Msa0928520:CDS
AACTAAAATCTCAATGTCAC+AGG	0.515231	6_2:-74044569	None:intergenic
AAGATCGGAAGTGGATCCTT+CGG	0.526716	6_2:+74038785	Msa0928520:CDS
AAGATGGAGTGGTGTAGACG+GGG	0.662328	6_2:+74040273	Msa0928520:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAATGAATTCAACACG+CGG	-	chr6_2:74038625-74038644	None:intergenic	30.0%
GATACCAAACATACTTTCAA+TGG	+	chr6_2:74039129-74039148	Msa0928520:intron	30.0%
AAGTATGTTTGGTATCACTA+TGG	-	chr6_2:74039252-74039271	None:intergenic	30.0%
CTCTATAATATTCTTCAAGG+AGG	+	chr6_2:74039686-74039705	Msa0928520:CDS	30.0%
AATGTTGTCAATTGCAGATT+GGG	-	chr6_2:74040123-74040142	None:intergenic	30.0%
ACTGACTAAAAAACATCACA+AGG	-	chr6_2:74040444-74040463	None:intergenic	30.0%
ATAGAGTATGTGCATTCTAA+AGG	+	chr6_2:74040591-74040610	Msa0928520:CDS	30.0%
TAGAGTATGTGCATTCTAAA+GGG	+	chr6_2:74040592-74040611	Msa0928520:CDS	30.0%
GAACAGTCAATTCTAAATGT+AGG	-	chr6_2:74040711-74040730	None:intergenic	30.0%
AGAAAGTTCAAAACCTGTAT+GGG	-	chr6_2:74040868-74040887	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	74038557	74044665	74038557	ID=Msa0928520;Name=Msa0928520
chr6_2	mRNA	74038557	74044665	74038557	ID=Msa0928520-mRNA-1;Parent=Msa0928520;Name=Msa0928520-mRNA-1;_AED=0.18;_eAED=0.18;_QI=189\|0.86\|0.93\|1\|0.86\|0.93\|16\|383\|507
chr6_2	exon	74038557	74038821	74038557	ID=Msa0928520-mRNA-1:exon:12590;Parent=Msa0928520-mRNA-1
chr6_2	exon	74038935	74038975	74038935	ID=Msa0928520-mRNA-1:exon:12591;Parent=Msa0928520-mRNA-1
chr6_2	exon	74039641	74039710	74039641	ID=Msa0928520-mRNA-1:exon:12592;Parent=Msa0928520-mRNA-1
chr6_2	exon	74040257	74040405	74040257	ID=Msa0928520-mRNA-1:exon:12593;Parent=Msa0928520-mRNA-1
chr6_2	exon	74040582	74040677	74040582	ID=Msa0928520-mRNA-1:exon:12594;Parent=Msa0928520-mRNA-1
chr6_2	exon	74040803	74040873	74040803	ID=Msa0928520-mRNA-1:exon:12595;Parent=Msa0928520-mRNA-1
chr6_2	exon	74041065	74041126	74041065	ID=Msa0928520-mRNA-1:exon:12596;Parent=Msa0928520-mRNA-1
chr6_2	exon	74041212	74041275	74041212	ID=Msa0928520-mRNA-1:exon:12597;Parent=Msa0928520-mRNA-1
chr6_2	exon	74041389	74041473	74041389	ID=Msa0928520-mRNA-1:exon:12598;Parent=Msa0928520-mRNA-1
chr6_2	exon	74041555	74041681	74041555	ID=Msa0928520-mRNA-1:exon:12599;Parent=Msa0928520-mRNA-1
chr6_2	exon	74042146	74042228	74042146	ID=Msa0928520-mRNA-1:exon:12600;Parent=Msa0928520-mRNA-1
chr6_2	exon	74042307	74042364	74042307	ID=Msa0928520-mRNA-1:exon:12601;Parent=Msa0928520-mRNA-1
chr6_2	exon	74042455	74042570	74042455	ID=Msa0928520-mRNA-1:exon:12602;Parent=Msa0928520-mRNA-1
chr6_2	exon	74042732	74042894	74042732	ID=Msa0928520-mRNA-1:exon:12603;Parent=Msa0928520-mRNA-1
chr6_2	exon	74043025	74043134	74043025	ID=Msa0928520-mRNA-1:exon:12604;Parent=Msa0928520-mRNA-1
chr6_2	exon	74044130	74044665	74044130	ID=Msa0928520-mRNA-1:exon:12605;Parent=Msa0928520-mRNA-1
chr6_2	five_prime_UTR	74038557	74038745	74038557	ID=Msa0928520-mRNA-1:five_prime_utr;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74038746	74038821	74038746	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74038935	74038975	74038935	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74039641	74039710	74039641	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74040257	74040405	74040257	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74040582	74040677	74040582	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74040803	74040873	74040803	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74041065	74041126	74041065	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74041212	74041275	74041212	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74041389	74041473	74041389	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74041555	74041681	74041555	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74042146	74042228	74042146	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74042307	74042364	74042307	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74042455	74042570	74042455	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74042732	74042894	74042732	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74043025	74043134	74043025	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	CDS	74044130	74044282	74044130	ID=Msa0928520-mRNA-1:cds;Parent=Msa0928520-mRNA-1
chr6_2	three_prime_UTR	74044283	74044665	74044283	ID=Msa0928520-mRNA-1:three_prime_utr;Parent=Msa0928520-mRNA-1

Gene Sequence

>Msa0928520

ATGGATCGAATCATCGGTGATAAATTCAAGTTAGGACGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACTCATATTGATACCTTCGAGATCGTTGCTGTCAAGATCGAGACTGGTAAAACGAAGCATCCACAATTGCTTTATGAAGCCAAGCTCTATAATATTCTTCAAGGAGGAAGTGGTATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGCCCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAATTTTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTATGTGCATTCTAAAGGGTTCCTCCATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTATATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCCACAACCAATCGCCACATCCCATACAGGGAGAACAAAAACTTAACAGGGACTGCGCGTTATGCAAGCTGCAATACTCATCTTGGGATTGAACAAAGCCGCCGGGATGATTTGGAGTCTCTTGGATATGTGCTTTTGTACTTCCTCAGAGGAAGTCTTCCTTGGCAAAACCTAAAGGCTGCGACAAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCTCATCCTGTAGAGTTTGCTTCCTACTTCCATTACTGCCATTCCTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGGGAGTTATTTGCTCGAGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCCCAGCCTCACATATCCCCGGTTCCTGTAGCGAGCAACAATCGCGCAATGCCCATGGATATTGATAACCAACAAGGGAATGTCTCTGCAGAGCAAATTAGATCAGACAATGCCACTTCTTCTGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCCTCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTTGAAGCATCAAGAAGGAACTCCTTGAAGCCTTCCCCGTCCACTGAAGCTGCAAACCATAGACATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTTCACATAAGTGTGAATCTGATCAAGAAGATTCCTGGCATGCATACAAACATGGAGCTGCATATTATGGGGTATTGCTTGCAAGTGATCTGCCCATGGAGACTACAAATGTGCTACAAGGTCTCTTTTTTTCTAATCTATATGGCAATGGATGAAATATGCAAAGACTATTGCATTTATATGGATGCCATCTACATTTTTTCTTTTTGGAGGATTTCCTTTTTTAACCTATATGGGTTAAAGAATGAAATATGTAGAGTAAATGACATCTAG

Protein sequence

>Msa0928520

MDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQPHISPVPVASNNRAMPMDIDNQQGNVSAEQIRSDNATSSGVKFQFKSSGGKNLASENPLGKNIFGEATIPSTSHSFEASRRNSLKPSPSTEAANHRHGQGSSKIGPSSSRMNVLHISVNLIKKIPGMHTNMELHIMGYCLQVICPWRLQMCYKVSFFLIYMAMDEICKDYCIYMDAIYIFSFWRISFFNLYGLKNEICRVNDI*