Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929480 | PNX89585.1 | 80.258 | 233 | 38 | 3 | 55 | 281 | 3 | 233 | 4.00e-129 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929480 | sp|F4HQ23|LRL27_ARATH | 29.958 | 237 | 143 | 9 | 44 | 267 | 240 | 466 | 3.27e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0897860 | Msa0929480 | 0.812406 | 4.309308e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929480 | MtrunA17_Chr6g0483851 | 61.798 | 267 | 94 | 3 | 15 | 276 | 5 | 268 | 8.04e-107 | 327 |
| Msa0929480 | MtrunA17_Chr6g0483791 | 63.602 | 261 | 88 | 2 | 16 | 272 | 1 | 258 | 1.71e-106 | 324 |
| Msa0929480 | MtrunA17_Chr6g0483921 | 56.318 | 277 | 113 | 3 | 16 | 286 | 1 | 275 | 1.30e-101 | 301 |
| Msa0929480 | MtrunA17_Chr8g0391231 | 28.269 | 283 | 172 | 13 | 25 | 294 | 5 | 269 | 1.78e-20 | 92.0 |
| Msa0929480 | MtrunA17_Chr7g0251131 | 27.381 | 252 | 158 | 7 | 22 | 267 | 1 | 233 | 4.46e-20 | 87.8 |
| Msa0929480 | MtrunA17_Chr7g0251011 | 24.910 | 277 | 183 | 7 | 28 | 298 | 10 | 267 | 2.65e-19 | 85.9 |
| Msa0929480 | MtrunA17_Chr8g0376061 | 30.804 | 224 | 129 | 10 | 58 | 271 | 34 | 241 | 4.33e-17 | 81.6 |
| Msa0929480 | MtrunA17_Chr6g0483901 | 28.571 | 210 | 122 | 8 | 60 | 256 | 47 | 241 | 5.25e-14 | 70.9 |
| Msa0929480 | MtrunA17_Chr6g0483801 | 25.541 | 231 | 140 | 9 | 56 | 273 | 37 | 248 | 2.97e-12 | 65.9 |
| Msa0929480 | MtrunA17_Chr6g0483911 | 24.583 | 240 | 145 | 9 | 53 | 275 | 26 | 246 | 3.26e-12 | 65.9 |
| Msa0929480 | MtrunA17_Chr6g0484051 | 37.398 | 123 | 62 | 4 | 60 | 181 | 49 | 157 | 2.11e-11 | 64.7 |
| Msa0929480 | MtrunA17_Chr1g0212811 | 32.843 | 204 | 116 | 10 | 64 | 257 | 41 | 233 | 3.09e-11 | 63.2 |
| Msa0929480 | MtrunA17_Chr7g0251121 | 28.063 | 253 | 151 | 12 | 30 | 267 | 8 | 244 | 4.27e-11 | 63.9 |
| Msa0929480 | MtrunA17_Chr7g0251061 | 28.696 | 230 | 127 | 13 | 60 | 273 | 47 | 255 | 5.73e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929480 | AT1G66930.2 | 29.958 | 237 | 143 | 9 | 44 | 267 | 240 | 466 | 3.32e-16 | 79.7 |
| Msa0929480 | AT1G66930.3 | 29.661 | 236 | 143 | 9 | 44 | 266 | 59 | 284 | 7.57e-16 | 78.6 |
| Msa0929480 | AT1G66930.1 | 29.661 | 236 | 143 | 9 | 44 | 266 | 59 | 284 | 7.75e-16 | 78.6 |
| Msa0929480 | AT1G67000.1 | 31.064 | 235 | 138 | 11 | 45 | 267 | 244 | 466 | 4.53e-15 | 76.3 |
| Msa0929480 | AT1G18390.2 | 26.991 | 226 | 139 | 8 | 56 | 271 | 33 | 242 | 6.54e-15 | 75.9 |
| Msa0929480 | AT5G38260.1 | 26.996 | 263 | 147 | 12 | 24 | 267 | 11 | 247 | 7.99e-15 | 75.5 |
| Msa0929480 | AT1G66880.3 | 29.907 | 214 | 116 | 9 | 57 | 261 | 33 | 221 | 2.49e-13 | 70.9 |
| Msa0929480 | AT1G66880.2 | 29.907 | 214 | 116 | 9 | 57 | 261 | 33 | 221 | 3.73e-13 | 70.5 |
| Msa0929480 | AT1G66880.2 | 25.991 | 227 | 133 | 9 | 60 | 267 | 256 | 466 | 1.72e-11 | 65.5 |
| Msa0929480 | AT1G66880.1 | 29.524 | 210 | 115 | 8 | 60 | 261 | 416 | 600 | 4.51e-13 | 70.5 |
| Msa0929480 | AT1G66880.1 | 25.991 | 227 | 133 | 9 | 60 | 267 | 635 | 845 | 1.52e-11 | 65.9 |
| Msa0929480 | AT1G66880.1 | 26.961 | 204 | 120 | 8 | 62 | 259 | 26 | 206 | 5.00e-11 | 64.3 |
| Msa0929480 | AT5G38210.3 | 23.529 | 221 | 147 | 6 | 57 | 267 | 20 | 228 | 7.39e-12 | 66.6 |
| Msa0929480 | AT5G38210.2 | 23.529 | 221 | 147 | 6 | 57 | 267 | 38 | 246 | 7.89e-12 | 66.2 |
| Msa0929480 | AT1G66910.1 | 26.609 | 233 | 136 | 9 | 57 | 267 | 38 | 257 | 1.05e-11 | 65.9 |
| Msa0929480 | AT1G66910.2 | 26.609 | 233 | 136 | 9 | 57 | 267 | 38 | 257 | 1.25e-11 | 65.9 |
Find 60 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGTAAGGGACGATTTA+TGG | 0.170227 | 6_2:-77519915 | Msa0929480:CDS |
| GCGATATTAGCTACCCATTC+TGG | 0.218451 | 6_2:-77520071 | Msa0929480:CDS |
| ATTGGTTGATTTCAATGTTA+TGG | 0.260052 | 6_2:-77519665 | Msa0929480:CDS |
| TATGAAGGATGTGAAACTTT+TGG | 0.265817 | 6_2:+77519962 | None:intergenic |
| CCTAGTTTCAAGTGACAAAT+TGG | 0.292169 | 6_2:-77519683 | Msa0929480:CDS |
| ACCACATCTTGTGAACCTTT+TGG | 0.312693 | 6_2:-77520108 | Msa0929480:CDS |
| GCGAAAATGAAAATCATTCT+AGG | 0.313685 | 6_2:-77518740 | Msa0929480:CDS |
| TTCAGTTATGTGTCTCTTGC+CGG | 0.319841 | 6_2:-77519479 | Msa0929480:CDS |
| AACGTAGAGGAGTTTGAGTT+TGG | 0.343075 | 6_2:+77519766 | None:intergenic |
| TAGGTGAAGGATTTGAGGTT+GGG | 0.354930 | 6_2:-77519579 | Msa0929480:CDS |
| AAGAATAGTATCACATTTCC+TGG | 0.356109 | 6_2:-77519637 | Msa0929480:CDS |
| TCGCTTTGGAGCGTTCTTCT+CGG | 0.377807 | 6_2:-77520245 | Msa0929480:CDS |
| TGAGGTTGGGTGGAGTGGTG+TGG | 0.400616 | 6_2:-77519566 | Msa0929480:CDS |
| GAGGTTGGGTGGAGTGGTGT+GGG | 0.406803 | 6_2:-77519565 | Msa0929480:CDS |
| GAGACATTTGATTTATATGA+AGG | 0.409674 | 6_2:+77519947 | None:intergenic |
| TGACAATCAAGCTTGAAGTT+TGG | 0.421038 | 6_2:+77520015 | None:intergenic |
| GTCAATGAATTCTTCAAGCC+AGG | 0.429363 | 6_2:+77519619 | None:intergenic |
| TGAAGTGATTTCTTGCCTCA+TGG | 0.433114 | 6_2:-77519728 | Msa0929480:CDS |
| GGATTTGAGGTTGGGTGGAG+TGG | 0.435864 | 6_2:-77519571 | Msa0929480:CDS |
| AAAGAAAACGAAGGTAGAAA+AGG | 0.443625 | 6_2:+77520210 | None:intergenic |
| CCAATTTGTCACTTGAAACT+AGG | 0.446574 | 6_2:+77519683 | None:intergenic |
| TTTACATCAATATATTGCTT+CGG | 0.447673 | 6_2:+77519862 | None:intergenic |
| TTTGGATGGCCGCAATAACT+TGG | 0.464631 | 6_2:+77520033 | None:intergenic |
| GGATGTTAAGATTCCAGAAT+GGG | 0.479133 | 6_2:+77520058 | None:intergenic |
| GACTTAAGAAGAAGAGTGGA+AGG | 0.485625 | 6_2:+77520166 | None:intergenic |
| CTGAAATTTCCACATCCAAA+AGG | 0.487786 | 6_2:+77520093 | None:intergenic |
| TTAGGTGAAGGATTTGAGGT+TGG | 0.490349 | 6_2:-77519580 | Msa0929480:CDS |
| AGAAACTAGGAACATCGCTT+TGG | 0.491158 | 6_2:-77520259 | Msa0929480:CDS |
| GATGGCCGCAATAACTTGGT+TGG | 0.501772 | 6_2:+77520037 | None:intergenic |
| GTGAAGGATTTGAGGTTGGG+TGG | 0.502660 | 6_2:-77519576 | Msa0929480:CDS |
| AATTGACTTAAGAAGAAGAG+TGG | 0.504168 | 6_2:+77520162 | None:intergenic |
| TGTGGTGGTTGCATGAAATC+TGG | 0.506044 | 6_2:-77519532 | Msa0929480:CDS |
| CCATCTGCCATGGATTTCTC+CGG | 0.525776 | 6_2:+77519460 | None:intergenic |
| GATGGAGTAACATCATCAAA+TGG | 0.529485 | 6_2:-77519442 | Msa0929480:intron |
| GCACAGAGAAGCATTTGAGC+AGG | 0.540476 | 6_2:-77518766 | Msa0929480:CDS |
| AATCAAGCTTGAAGTTTGGA+TGG | 0.541494 | 6_2:+77520019 | None:intergenic |
| GGGAAATGCTAGAAGAAACT+AGG | 0.548819 | 6_2:-77520272 | None:intergenic |
| CCGGAGAAATCCATGGCAGA+TGG | 0.557417 | 6_2:-77519460 | Msa0929480:CDS |
| GTAGGAATCTGTTAGAACAT+TGG | 0.566351 | 6_2:+77518809 | None:intergenic |
| AACGAAGGTAGAAAAGGAAG+CGG | 0.568895 | 6_2:+77520216 | None:intergenic |
| TGGATGTTAAGATTCCAGAA+TGG | 0.569379 | 6_2:+77520057 | None:intergenic |
| TCCAAAAGGTTCACAAGATG+TGG | 0.579964 | 6_2:+77520107 | None:intergenic |
| TTCAAGCTTGATTGTCAACA+TGG | 0.587950 | 6_2:-77520009 | Msa0929480:CDS |
| GTGATTTCTTGCCTCATGGA+GGG | 0.587986 | 6_2:-77519724 | Msa0929480:CDS |
| TGATGTTACTCCATCTGCCA+TGG | 0.590101 | 6_2:+77519450 | None:intergenic |
| AACATCCAACCAAGTTATTG+CGG | 0.590230 | 6_2:-77520042 | Msa0929480:CDS |
| CAATAGTAGAAACATCATGT+AGG | 0.608568 | 6_2:+77518791 | None:intergenic |
| TCTCTTGCCGGAGAAATCCA+TGG | 0.611162 | 6_2:-77519467 | Msa0929480:CDS |
| AAAAGGTTCACAAGATGTGG+TGG | 0.620771 | 6_2:+77520110 | None:intergenic |
| GAATTCATTGACAAATGACT+CGG | 0.637714 | 6_2:-77519608 | Msa0929480:CDS |
| AGTGATTTCTTGCCTCATGG+AGG | 0.643094 | 6_2:-77519725 | Msa0929480:CDS |
| ATGAAATCTGGTAGGAAATG+CGG | 0.644240 | 6_2:-77519520 | Msa0929480:CDS |
| GAAGGTAGAAAAGGAAGCGG+AGG | 0.652700 | 6_2:+77520219 | None:intergenic |
| TATACTCTATTGTACGAGTG+TGG | 0.664109 | 6_2:-77519796 | Msa0929480:CDS |
| GGTGGACACAACATTAGTAG+TGG | 0.670011 | 6_2:+77520128 | None:intergenic |
| AACTTCAGAACTCAACGTAG+AGG | 0.677319 | 6_2:+77519753 | None:intergenic |
| GTGGTTGCATGAAATCTGGT+AGG | 0.685356 | 6_2:-77519528 | Msa0929480:CDS |
| GGTGTGGGAGAAGAAATATG+TGG | 0.752804 | 6_2:-77519550 | Msa0929480:CDS |
| GTGGGAGAAGAAATATGTGG+TGG | 0.753774 | 6_2:-77519547 | Msa0929480:CDS |
| TTGATGATGAAAGAAAACGA+AGG | 0.776756 | 6_2:+77520201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATCAATATATTGCTT+CGG | + | chr6_2:77519145-77519164 | None:intergenic | 20.0% |
| !!! | ACATATTCATAAGATGTTTT+AGG | - | chr6_2:77519675-77519694 | Msa0929480:CDS | 20.0% |
| !!! | GATTTTGTAGATTGATTTAA+TGG | - | chr6_2:77519697-77519716 | Msa0929480:CDS | 20.0% |
| !!! | TATTTTAAGAATGAGGATAA+AGG | + | chr6_2:77519847-77519866 | None:intergenic | 20.0% |
| !!! | GAAATCATATTTTAAGAATG+AGG | + | chr6_2:77519854-77519873 | None:intergenic | 20.0% |
| !! | TTTACATCAATATATTGCTT+CGG | + | chr6_2:77519145-77519164 | None:intergenic | 20.0% |
| !!! | ACATATTCATAAGATGTTTT+AGG | - | chr6_2:77519675-77519694 | Msa0929480:CDS | 20.0% |
| !!! | GATTTTGTAGATTGATTTAA+TGG | - | chr6_2:77519697-77519716 | Msa0929480:CDS | 20.0% |
| !!! | TATTTTAAGAATGAGGATAA+AGG | + | chr6_2:77519847-77519866 | None:intergenic | 20.0% |
| !!! | GAAATCATATTTTAAGAATG+AGG | + | chr6_2:77519854-77519873 | None:intergenic | 20.0% |
| !! | GAGACATTTGATTTATATGA+AGG | + | chr6_2:77519060-77519079 | None:intergenic | 25.0% |
| !! | ATTGGTTGATTTCAATGTTA+TGG | - | chr6_2:77519339-77519358 | Msa0929480:intron | 25.0% |
| ! | GAAGAATCTAATAAAATGTC+AGG | + | chr6_2:77519601-77519620 | None:intergenic | 25.0% |
| ! | GAATATGTGATAAACTAGTT+TGG | + | chr6_2:77519663-77519682 | None:intergenic | 25.0% |
| !! | GAGACATTTGATTTATATGA+AGG | + | chr6_2:77519060-77519079 | None:intergenic | 25.0% |
| !! | ATTGGTTGATTTCAATGTTA+TGG | - | chr6_2:77519339-77519358 | Msa0929480:intron | 25.0% |
| ! | GAAGAATCTAATAAAATGTC+AGG | + | chr6_2:77519601-77519620 | None:intergenic | 25.0% |
| ! | GAATATGTGATAAACTAGTT+TGG | + | chr6_2:77519663-77519682 | None:intergenic | 25.0% |
| AAAGAAAACGAAGGTAGAAA+AGG | + | chr6_2:77518797-77518816 | None:intergenic | 30.0% | |
| !! | TTGATGATGAAAGAAAACGA+AGG | + | chr6_2:77518806-77518825 | None:intergenic | 30.0% |
| ! | AATTGACTTAAGAAGAAGAG+TGG | + | chr6_2:77518845-77518864 | None:intergenic | 30.0% |
| ! | ATGAAGGATGTGAAACTTTT+GGG | + | chr6_2:77519044-77519063 | None:intergenic | 30.0% |
| ! | TATGAAGGATGTGAAACTTT+TGG | + | chr6_2:77519045-77519064 | None:intergenic | 30.0% |
| ! | ATCAAATGTCTCAACTTTTG+AGG | - | chr6_2:77519068-77519087 | Msa0929480:intron | 30.0% |
| !! | TCAACTTTTGAGGATTGTAA+GGG | - | chr6_2:77519078-77519097 | Msa0929480:intron | 30.0% |
| AAGAATAGTATCACATTTCC+TGG | - | chr6_2:77519367-77519386 | Msa0929480:intron | 30.0% | |
| GAATTCATTGACAAATGACT+CGG | - | chr6_2:77519396-77519415 | Msa0929480:intron | 30.0% | |
| AGTTAACATGTCACAATACA+AGG | - | chr6_2:77519762-77519781 | Msa0929480:CDS | 30.0% | |
| AGGCAAATAGAAATAGGAAT+GGG | + | chr6_2:77520008-77520027 | None:intergenic | 30.0% | |
| CAATAGTAGAAACATCATGT+AGG | + | chr6_2:77520216-77520235 | None:intergenic | 30.0% | |
| GCGAAAATGAAAATCATTCT+AGG | - | chr6_2:77520264-77520283 | Msa0929480:CDS | 30.0% | |
| AAAGAAAACGAAGGTAGAAA+AGG | + | chr6_2:77518797-77518816 | None:intergenic | 30.0% | |
| !! | TTGATGATGAAAGAAAACGA+AGG | + | chr6_2:77518806-77518825 | None:intergenic | 30.0% |
| ! | AATTGACTTAAGAAGAAGAG+TGG | + | chr6_2:77518845-77518864 | None:intergenic | 30.0% |
| ! | ATGAAGGATGTGAAACTTTT+GGG | + | chr6_2:77519044-77519063 | None:intergenic | 30.0% |
| ! | TATGAAGGATGTGAAACTTT+TGG | + | chr6_2:77519045-77519064 | None:intergenic | 30.0% |
| ! | ATCAAATGTCTCAACTTTTG+AGG | - | chr6_2:77519068-77519087 | Msa0929480:intron | 30.0% |
| !! | TCAACTTTTGAGGATTGTAA+GGG | - | chr6_2:77519078-77519097 | Msa0929480:intron | 30.0% |
| AAGAATAGTATCACATTTCC+TGG | - | chr6_2:77519367-77519386 | Msa0929480:intron | 30.0% | |
| GAATTCATTGACAAATGACT+CGG | - | chr6_2:77519396-77519415 | Msa0929480:intron | 30.0% | |
| AGTTAACATGTCACAATACA+AGG | - | chr6_2:77519762-77519781 | Msa0929480:CDS | 30.0% | |
| AGGCAAATAGAAATAGGAAT+GGG | + | chr6_2:77520008-77520027 | None:intergenic | 30.0% | |
| CAATAGTAGAAACATCATGT+AGG | + | chr6_2:77520216-77520235 | None:intergenic | 30.0% | |
| GCGAAAATGAAAATCATTCT+AGG | - | chr6_2:77520264-77520283 | Msa0929480:CDS | 30.0% | |
| CTGAAATTTCCACATCCAAA+AGG | + | chr6_2:77518914-77518933 | None:intergenic | 35.0% | |
| GGATGTTAAGATTCCAGAAT+GGG | + | chr6_2:77518949-77518968 | None:intergenic | 35.0% | |
| TGGATGTTAAGATTCCAGAA+TGG | + | chr6_2:77518950-77518969 | None:intergenic | 35.0% | |
| AACATCCAACCAAGTTATTG+CGG | - | chr6_2:77518962-77518981 | Msa0929480:intron | 35.0% | |
| AATCAAGCTTGAAGTTTGGA+TGG | + | chr6_2:77518988-77519007 | None:intergenic | 35.0% | |
| TGACAATCAAGCTTGAAGTT+TGG | + | chr6_2:77518992-77519011 | None:intergenic | 35.0% | |
| TTCAAGCTTGATTGTCAACA+TGG | - | chr6_2:77518995-77519014 | Msa0929480:intron | 35.0% | |
| !! | CTCAACTTTTGAGGATTGTA+AGG | - | chr6_2:77519077-77519096 | Msa0929480:intron | 35.0% |
| TATACTCTATTGTACGAGTG+TGG | - | chr6_2:77519208-77519227 | Msa0929480:intron | 35.0% | |
| ! | CCAATTTGTCACTTGAAACT+AGG | + | chr6_2:77519324-77519343 | None:intergenic | 35.0% |
| ! | CCTAGTTTCAAGTGACAAAT+TGG | - | chr6_2:77519321-77519340 | Msa0929480:intron | 35.0% |
| !! | ACAAATGACTCGGATGTTTT+AGG | - | chr6_2:77519406-77519425 | Msa0929480:intron | 35.0% |
| !! | TGTTTTAGGTGAAGGATTTG+AGG | - | chr6_2:77519420-77519439 | Msa0929480:intron | 35.0% |
| ATGAAATCTGGTAGGAAATG+CGG | - | chr6_2:77519484-77519503 | Msa0929480:CDS | 35.0% | |
| GATGGAGTAACATCATCAAA+TGG | - | chr6_2:77519562-77519581 | Msa0929480:CDS | 35.0% | |
| !! | TTTCCGAGCTTTAAATCCAA+CGG | - | chr6_2:77519893-77519912 | Msa0929480:CDS | 35.0% |
| TGAGCAAGGTTTGTAAATAG+TGG | - | chr6_2:77519958-77519977 | Msa0929480:CDS | 35.0% | |
| GGCAAATAGAAATAGGAATG+GGG | + | chr6_2:77520007-77520026 | None:intergenic | 35.0% | |
| GAGGCAAATAGAAATAGGAA+TGG | + | chr6_2:77520009-77520028 | None:intergenic | 35.0% | |
| ACTGAGAGGCAAATAGAAAT+AGG | + | chr6_2:77520014-77520033 | None:intergenic | 35.0% | |
| GTAGGAATCTGTTAGAACAT+TGG | + | chr6_2:77520198-77520217 | None:intergenic | 35.0% | |
| CTGAAATTTCCACATCCAAA+AGG | + | chr6_2:77518914-77518933 | None:intergenic | 35.0% | |
| GGATGTTAAGATTCCAGAAT+GGG | + | chr6_2:77518949-77518968 | None:intergenic | 35.0% | |
| TGGATGTTAAGATTCCAGAA+TGG | + | chr6_2:77518950-77518969 | None:intergenic | 35.0% | |
| AACATCCAACCAAGTTATTG+CGG | - | chr6_2:77518962-77518981 | Msa0929480:intron | 35.0% | |
| AATCAAGCTTGAAGTTTGGA+TGG | + | chr6_2:77518988-77519007 | None:intergenic | 35.0% | |
| TGACAATCAAGCTTGAAGTT+TGG | + | chr6_2:77518992-77519011 | None:intergenic | 35.0% | |
| TTCAAGCTTGATTGTCAACA+TGG | - | chr6_2:77518995-77519014 | Msa0929480:intron | 35.0% | |
| !! | CTCAACTTTTGAGGATTGTA+AGG | - | chr6_2:77519077-77519096 | Msa0929480:intron | 35.0% |
| TATACTCTATTGTACGAGTG+TGG | - | chr6_2:77519208-77519227 | Msa0929480:intron | 35.0% | |
| ! | CCAATTTGTCACTTGAAACT+AGG | + | chr6_2:77519324-77519343 | None:intergenic | 35.0% |
| ! | CCTAGTTTCAAGTGACAAAT+TGG | - | chr6_2:77519321-77519340 | Msa0929480:intron | 35.0% |
| !! | ACAAATGACTCGGATGTTTT+AGG | - | chr6_2:77519406-77519425 | Msa0929480:intron | 35.0% |
| !! | TGTTTTAGGTGAAGGATTTG+AGG | - | chr6_2:77519420-77519439 | Msa0929480:intron | 35.0% |
| ATGAAATCTGGTAGGAAATG+CGG | - | chr6_2:77519484-77519503 | Msa0929480:CDS | 35.0% | |
| GATGGAGTAACATCATCAAA+TGG | - | chr6_2:77519562-77519581 | Msa0929480:CDS | 35.0% | |
| !! | TTTCCGAGCTTTAAATCCAA+CGG | - | chr6_2:77519893-77519912 | Msa0929480:CDS | 35.0% |
| TGAGCAAGGTTTGTAAATAG+TGG | - | chr6_2:77519958-77519977 | Msa0929480:CDS | 35.0% | |
| GGCAAATAGAAATAGGAATG+GGG | + | chr6_2:77520007-77520026 | None:intergenic | 35.0% | |
| GAGGCAAATAGAAATAGGAA+TGG | + | chr6_2:77520009-77520028 | None:intergenic | 35.0% | |
| ACTGAGAGGCAAATAGAAAT+AGG | + | chr6_2:77520014-77520033 | None:intergenic | 35.0% | |
| GTAGGAATCTGTTAGAACAT+TGG | + | chr6_2:77520198-77520217 | None:intergenic | 35.0% | |
| AGAAACTAGGAACATCGCTT+TGG | - | chr6_2:77518745-77518764 | Msa0929480:CDS | 40.0% | |
| AACGAAGGTAGAAAAGGAAG+CGG | + | chr6_2:77518791-77518810 | None:intergenic | 40.0% | |
| GACTTAAGAAGAAGAGTGGA+AGG | + | chr6_2:77518841-77518860 | None:intergenic | 40.0% | |
| AAAAGGTTCACAAGATGTGG+TGG | + | chr6_2:77518897-77518916 | None:intergenic | 40.0% | |
| ! | ACCACATCTTGTGAACCTTT+TGG | - | chr6_2:77518896-77518915 | Msa0929480:intron | 40.0% |
| TCCAAAAGGTTCACAAGATG+TGG | + | chr6_2:77518900-77518919 | None:intergenic | 40.0% | |
| ! | TCTTGTGAACCTTTTGGATG+TGG | - | chr6_2:77518902-77518921 | Msa0929480:intron | 40.0% |
| GGATTGTAAGGGACGATTTA+TGG | - | chr6_2:77519089-77519108 | Msa0929480:intron | 40.0% | |
| ! | AACGTAGAGGAGTTTGAGTT+TGG | + | chr6_2:77519241-77519260 | None:intergenic | 40.0% |
| AACTTCAGAACTCAACGTAG+AGG | + | chr6_2:77519254-77519273 | None:intergenic | 40.0% | |
| TGAAGTGATTTCTTGCCTCA+TGG | - | chr6_2:77519276-77519295 | Msa0929480:intron | 40.0% | |
| GTCAATGAATTCTTCAAGCC+AGG | + | chr6_2:77519388-77519407 | None:intergenic | 40.0% | |
| ! | TTAGGTGAAGGATTTGAGGT+TGG | - | chr6_2:77519424-77519443 | Msa0929480:intron | 40.0% |
| ! | TAGGTGAAGGATTTGAGGTT+GGG | - | chr6_2:77519425-77519444 | Msa0929480:intron | 40.0% |
| TTCAGTTATGTGTCTCTTGC+CGG | - | chr6_2:77519525-77519544 | Msa0929480:CDS | 40.0% | |
| ! | CGATACGTCTAGTTCATGTT+TGG | - | chr6_2:77519731-77519750 | Msa0929480:CDS | 40.0% |
| !! | AATCATGGAGGTTTTCTGGT+GGG | + | chr6_2:77520038-77520057 | None:intergenic | 40.0% |
| ! | AAGGAATCATGGAGGTTTTC+TGG | + | chr6_2:77520042-77520061 | None:intergenic | 40.0% |
| AGAAACTAGGAACATCGCTT+TGG | - | chr6_2:77518745-77518764 | Msa0929480:CDS | 40.0% | |
| AACGAAGGTAGAAAAGGAAG+CGG | + | chr6_2:77518791-77518810 | None:intergenic | 40.0% | |
| GACTTAAGAAGAAGAGTGGA+AGG | + | chr6_2:77518841-77518860 | None:intergenic | 40.0% | |
| AAAAGGTTCACAAGATGTGG+TGG | + | chr6_2:77518897-77518916 | None:intergenic | 40.0% | |
| ! | ACCACATCTTGTGAACCTTT+TGG | - | chr6_2:77518896-77518915 | Msa0929480:intron | 40.0% |
| TCCAAAAGGTTCACAAGATG+TGG | + | chr6_2:77518900-77518919 | None:intergenic | 40.0% | |
| ! | TCTTGTGAACCTTTTGGATG+TGG | - | chr6_2:77518902-77518921 | Msa0929480:intron | 40.0% |
| GGATTGTAAGGGACGATTTA+TGG | - | chr6_2:77519089-77519108 | Msa0929480:intron | 40.0% | |
| ! | AACGTAGAGGAGTTTGAGTT+TGG | + | chr6_2:77519241-77519260 | None:intergenic | 40.0% |
| AACTTCAGAACTCAACGTAG+AGG | + | chr6_2:77519254-77519273 | None:intergenic | 40.0% | |
| TGAAGTGATTTCTTGCCTCA+TGG | - | chr6_2:77519276-77519295 | Msa0929480:intron | 40.0% | |
| GTCAATGAATTCTTCAAGCC+AGG | + | chr6_2:77519388-77519407 | None:intergenic | 40.0% | |
| ! | TTAGGTGAAGGATTTGAGGT+TGG | - | chr6_2:77519424-77519443 | Msa0929480:intron | 40.0% |
| ! | TAGGTGAAGGATTTGAGGTT+GGG | - | chr6_2:77519425-77519444 | Msa0929480:intron | 40.0% |
| TTCAGTTATGTGTCTCTTGC+CGG | - | chr6_2:77519525-77519544 | Msa0929480:CDS | 40.0% | |
| ! | CGATACGTCTAGTTCATGTT+TGG | - | chr6_2:77519731-77519750 | Msa0929480:CDS | 40.0% |
| !! | AATCATGGAGGTTTTCTGGT+GGG | + | chr6_2:77520038-77520057 | None:intergenic | 40.0% |
| ! | AAGGAATCATGGAGGTTTTC+TGG | + | chr6_2:77520042-77520061 | None:intergenic | 40.0% |
| GGTGGACACAACATTAGTAG+TGG | + | chr6_2:77518879-77518898 | None:intergenic | 45.0% | |
| GCGATATTAGCTACCCATTC+TGG | - | chr6_2:77518933-77518952 | Msa0929480:intron | 45.0% | |
| TTTGGATGGCCGCAATAACT+TGG | + | chr6_2:77518974-77518993 | None:intergenic | 45.0% | |
| AGTGATTTCTTGCCTCATGG+AGG | - | chr6_2:77519279-77519298 | Msa0929480:intron | 45.0% | |
| GTGATTTCTTGCCTCATGGA+GGG | - | chr6_2:77519280-77519299 | Msa0929480:intron | 45.0% | |
| !! | GACTCGGATGTTTTAGGTGA+AGG | - | chr6_2:77519412-77519431 | Msa0929480:intron | 45.0% |
| GGTGTGGGAGAAGAAATATG+TGG | - | chr6_2:77519454-77519473 | Msa0929480:CDS | 45.0% | |
| GTGGGAGAAGAAATATGTGG+TGG | - | chr6_2:77519457-77519476 | Msa0929480:CDS | 45.0% | |
| TGTGGTGGTTGCATGAAATC+TGG | - | chr6_2:77519472-77519491 | Msa0929480:CDS | 45.0% | |
| GTGGTTGCATGAAATCTGGT+AGG | - | chr6_2:77519476-77519495 | Msa0929480:CDS | 45.0% | |
| TGATGTTACTCCATCTGCCA+TGG | + | chr6_2:77519557-77519576 | None:intergenic | 45.0% | |
| ! | CGTCCGTTGGATTTAAAGCT+CGG | + | chr6_2:77519899-77519918 | None:intergenic | 45.0% |
| GATTACGAATTCACGTCCGT+TGG | + | chr6_2:77519912-77519931 | None:intergenic | 45.0% | |
| CTCAAGTACACTCTTGAGCA+AGG | - | chr6_2:77519944-77519963 | Msa0929480:CDS | 45.0% | |
| ! | GAATCATGGAGGTTTTCTGG+TGG | + | chr6_2:77520039-77520058 | None:intergenic | 45.0% |
| AAGAGTCGCTGAAGGAATCA+TGG | + | chr6_2:77520053-77520072 | None:intergenic | 45.0% | |
| GGTGGACACAACATTAGTAG+TGG | + | chr6_2:77518879-77518898 | None:intergenic | 45.0% | |
| GCGATATTAGCTACCCATTC+TGG | - | chr6_2:77518933-77518952 | Msa0929480:intron | 45.0% | |
| TTTGGATGGCCGCAATAACT+TGG | + | chr6_2:77518974-77518993 | None:intergenic | 45.0% | |
| AGTGATTTCTTGCCTCATGG+AGG | - | chr6_2:77519279-77519298 | Msa0929480:intron | 45.0% | |
| GTGATTTCTTGCCTCATGGA+GGG | - | chr6_2:77519280-77519299 | Msa0929480:intron | 45.0% | |
| !! | GACTCGGATGTTTTAGGTGA+AGG | - | chr6_2:77519412-77519431 | Msa0929480:intron | 45.0% |
| GGTGTGGGAGAAGAAATATG+TGG | - | chr6_2:77519454-77519473 | Msa0929480:CDS | 45.0% | |
| GTGGGAGAAGAAATATGTGG+TGG | - | chr6_2:77519457-77519476 | Msa0929480:CDS | 45.0% | |
| TGTGGTGGTTGCATGAAATC+TGG | - | chr6_2:77519472-77519491 | Msa0929480:CDS | 45.0% | |
| GTGGTTGCATGAAATCTGGT+AGG | - | chr6_2:77519476-77519495 | Msa0929480:CDS | 45.0% | |
| TGATGTTACTCCATCTGCCA+TGG | + | chr6_2:77519557-77519576 | None:intergenic | 45.0% | |
| ! | CGTCCGTTGGATTTAAAGCT+CGG | + | chr6_2:77519899-77519918 | None:intergenic | 45.0% |
| GATTACGAATTCACGTCCGT+TGG | + | chr6_2:77519912-77519931 | None:intergenic | 45.0% | |
| CTCAAGTACACTCTTGAGCA+AGG | - | chr6_2:77519944-77519963 | Msa0929480:CDS | 45.0% | |
| ! | GAATCATGGAGGTTTTCTGG+TGG | + | chr6_2:77520039-77520058 | None:intergenic | 45.0% |
| AAGAGTCGCTGAAGGAATCA+TGG | + | chr6_2:77520053-77520072 | None:intergenic | 45.0% | |
| !! | TCGCTTTGGAGCGTTCTTCT+CGG | - | chr6_2:77518759-77518778 | Msa0929480:CDS | 50.0% |
| GAAGGTAGAAAAGGAAGCGG+AGG | + | chr6_2:77518788-77518807 | None:intergenic | 50.0% | |
| GATGGCCGCAATAACTTGGT+TGG | + | chr6_2:77518970-77518989 | None:intergenic | 50.0% | |
| ! | CACGAGTTTTACCCTCCATG+AGG | + | chr6_2:77519294-77519313 | None:intergenic | 50.0% |
| ! | GTGAAGGATTTGAGGTTGGG+TGG | - | chr6_2:77519428-77519447 | Msa0929480:intron | 50.0% |
| TCTCTTGCCGGAGAAATCCA+TGG | - | chr6_2:77519537-77519556 | Msa0929480:CDS | 50.0% | |
| CCATCTGCCATGGATTTCTC+CGG | + | chr6_2:77519547-77519566 | None:intergenic | 50.0% | |
| AAGCTCGGAAATATCGCACG+AGG | + | chr6_2:77519884-77519903 | None:intergenic | 50.0% | |
| !! | GTTTTCTGGTGGGAACTGAG+AGG | + | chr6_2:77520028-77520047 | None:intergenic | 50.0% |
| AGTCGCTGAAGGAATCATGG+AGG | + | chr6_2:77520050-77520069 | None:intergenic | 50.0% | |
| AGCTGCATAAGAGTCGCTGA+AGG | + | chr6_2:77520061-77520080 | None:intergenic | 50.0% | |
| CAGCGACTCTTATGCAGCTT+AGG | - | chr6_2:77520062-77520081 | Msa0929480:CDS | 50.0% | |
| !! | GCACAGAGAAGCATTTGAGC+AGG | - | chr6_2:77520238-77520257 | Msa0929480:CDS | 50.0% |
| !! | TCGCTTTGGAGCGTTCTTCT+CGG | - | chr6_2:77518759-77518778 | Msa0929480:CDS | 50.0% |
| GAAGGTAGAAAAGGAAGCGG+AGG | + | chr6_2:77518788-77518807 | None:intergenic | 50.0% | |
| GATGGCCGCAATAACTTGGT+TGG | + | chr6_2:77518970-77518989 | None:intergenic | 50.0% | |
| ! | CACGAGTTTTACCCTCCATG+AGG | + | chr6_2:77519294-77519313 | None:intergenic | 50.0% |
| ! | GTGAAGGATTTGAGGTTGGG+TGG | - | chr6_2:77519428-77519447 | Msa0929480:intron | 50.0% |
| TCTCTTGCCGGAGAAATCCA+TGG | - | chr6_2:77519537-77519556 | Msa0929480:CDS | 50.0% | |
| CCATCTGCCATGGATTTCTC+CGG | + | chr6_2:77519547-77519566 | None:intergenic | 50.0% | |
| AAGCTCGGAAATATCGCACG+AGG | + | chr6_2:77519884-77519903 | None:intergenic | 50.0% | |
| !! | GTTTTCTGGTGGGAACTGAG+AGG | + | chr6_2:77520028-77520047 | None:intergenic | 50.0% |
| AGTCGCTGAAGGAATCATGG+AGG | + | chr6_2:77520050-77520069 | None:intergenic | 50.0% | |
| AGCTGCATAAGAGTCGCTGA+AGG | + | chr6_2:77520061-77520080 | None:intergenic | 50.0% | |
| CAGCGACTCTTATGCAGCTT+AGG | - | chr6_2:77520062-77520081 | Msa0929480:CDS | 50.0% | |
| !! | GCACAGAGAAGCATTTGAGC+AGG | - | chr6_2:77520238-77520257 | Msa0929480:CDS | 50.0% |
| ! | GGATTTGAGGTTGGGTGGAG+TGG | - | chr6_2:77519433-77519452 | Msa0929480:intron | 55.0% |
| CCGGAGAAATCCATGGCAGA+TGG | - | chr6_2:77519544-77519563 | Msa0929480:CDS | 55.0% | |
| ! | GGATTTGAGGTTGGGTGGAG+TGG | - | chr6_2:77519433-77519452 | Msa0929480:intron | 55.0% |
| CCGGAGAAATCCATGGCAGA+TGG | - | chr6_2:77519544-77519563 | Msa0929480:CDS | 55.0% | |
| TGAGGTTGGGTGGAGTGGTG+TGG | - | chr6_2:77519438-77519457 | Msa0929480:intron | 60.0% | |
| GAGGTTGGGTGGAGTGGTGT+GGG | - | chr6_2:77519439-77519458 | Msa0929480:intron | 60.0% | |
| TGAGGTTGGGTGGAGTGGTG+TGG | - | chr6_2:77519438-77519457 | Msa0929480:intron | 60.0% | |
| GAGGTTGGGTGGAGTGGTGT+GGG | - | chr6_2:77519439-77519458 | Msa0929480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 77518737 | 77520289 | 77518737 | ID=Msa0929480;Name=Msa0929480 |
| chr6_2 | mRNA | 77518737 | 77520289 | 77518737 | ID=Msa0929480-mRNA-1;Parent=Msa0929480;Name=Msa0929480-mRNA-1;_AED=0.04;_eAED=0.11;_QI=0|0|0|1|0|0|2|0|313 |
| chr6_2 | exon | 77519443 | 77520289 | 77519443 | ID=Msa0929480-mRNA-1:exon:13111;Parent=Msa0929480-mRNA-1 |
| chr6_2 | exon | 77518737 | 77518831 | 77518737 | ID=Msa0929480-mRNA-1:exon:13110;Parent=Msa0929480-mRNA-1 |
| chr6_2 | CDS | 77519443 | 77520289 | 77519443 | ID=Msa0929480-mRNA-1:cds;Parent=Msa0929480-mRNA-1 |
| chr6_2 | CDS | 77518737 | 77518831 | 77518737 | ID=Msa0929480-mRNA-1:cds;Parent=Msa0929480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
