AlfalfaGEDB | Msa0897860

M. sativa cultivar zhongmu-4 / Msa0897860

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897860	XP_013452958.2	65.134	674	194	8	16	652	1	670	0.0	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897860	sp\|Q9FF31\|LRL21_ARATH	39.017	651	334	17	24	651	11	621	1.56e-142	432

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897860	A0A396HJH8	65.134	674	194	8	16	652	1	670	0.0	842

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0897860	Msa0897890	0.863846	1.859763e-64	-8.615850e-47
Msa0897860	Msa0929480	0.812406	4.309308e-51	-8.615850e-47
Msa0897860	Msa0963590	0.831673	1.461262e-55	-8.615850e-47
Msa0897860	Msa0998050	0.827249	1.736193e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897860	MtrunA17_Chr6g0483791	65.134	674	194	8	16	652	1	670	0.0	842
Msa0897860	MtrunA17_Chr6g0484051	57.337	661	204	15	36	652	23	649	0.0	650
Msa0897860	MtrunA17_Chr6g0483821	55.000	620	240	15	60	652	54	661	0.0	610
Msa0897860	MtrunA17_Chr6g0484021	72.178	381	96	2	280	650	226	606	0.0	569
Msa0897860	MtrunA17_Chr6g0483981	67.883	411	115	3	252	652	166	569	0.0	567
Msa0897860	MtrunA17_Chr6g0484041	72.312	372	93	2	291	652	253	624	0.0	559
Msa0897860	MtrunA17_Chr6g0483851	71.466	382	100	3	280	652	331	712	0.0	547
Msa0897860	MtrunA17_Chr6g0483851	62.214	262	92	2	15	272	5	263	1.56e-102	327
Msa0897860	MtrunA17_Chr8g0391231	46.677	662	296	21	25	650	5	645	0.0	532
Msa0897860	MtrunA17_Chr6g0484071	70.278	360	97	2	303	652	1	360	0.0	522

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897860	AT5G38260.1	39.017	651	334	17	24	651	11	621	1.59e-143	432
Msa0897860	AT1G67000.1	41.977	617	305	18	58	639	256	854	2.77e-142	437
Msa0897860	AT1G66910.2	39.524	630	323	17	57	650	38	645	1.48e-141	428
Msa0897860	AT1G66910.1	39.206	630	328	16	57	650	38	648	1.96e-140	425
Msa0897860	AT1G66930.1	41.287	637	298	19	44	650	59	649	5.65e-138	419
Msa0897860	AT1G66930.2	41.444	637	325	19	44	650	240	858	5.55e-137	423
Msa0897860	AT1G66920.2	40.325	615	304	19	57	650	33	605	5.56e-135	409
Msa0897860	AT5G38250.1	40.661	605	301	20	57	644	38	601	1.02e-131	401
Msa0897860	AT1G66920.1	39.675	615	300	18	57	650	33	597	2.79e-131	399
Msa0897860	AT4G18250.1	52.617	363	150	8	291	640	296	649	8.53e-122	377

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Find 151 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCACAAGATGTGG+TGG	0.620771	6_1:+90403187	None:intergenic
AAACACTTCCACCTTTGAGC+TGG	0.447418	6_1:-90400501	Msa0897860:CDS
AAAGAAAACGAAGGTAGAAA+AGG	0.443625	6_1:+90403287	None:intergenic
AAAGTCGAATTAGGACAAGG+TGG	0.717357	6_1:-90400760	Msa0897860:CDS
AAATAATGCTCTCTTTCTTT+GGG	0.322721	6_1:+90400317	None:intergenic
AAATTTCTATTCCACAGCTC+TGG	0.462365	6_1:+90400256	None:intergenic
AACAACTTCAAAGTCGAATT+AGG	0.336777	6_1:-90400769	Msa0897860:CDS
AACACTTCCACCTTTGAGCT+GGG	0.494604	6_1:-90400500	Msa0897860:CDS
AACATCCAACCAAGTTATTG+CGG	0.590230	6_1:-90403119	Msa0897860:CDS
AACCCAAAATCTGATATCTT+TGG	0.356361	6_1:+90400352	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTAATTAAGCCATTCGA+TGG	+	chr6_1:90399965-90399984	None:intergenic	30.0%
ATCGAATGGCTTAATTAACA+AGG	-	chr6_1:90399964-90399983	Msa0897860:CDS	30.0%
AGTGGAAGGATATTATTTAG+AGG	+	chr6_1:90400125-90400144	None:intergenic	30.0%
AAATGTTTCCACAATCAAAG+TGG	+	chr6_1:90400143-90400162	None:intergenic	30.0%
AAGAATCTTGCATACATGAA+TGG	+	chr6_1:90400448-90400467	None:intergenic	30.0%
GGACTTTAAATTTCGTAGAT+AGG	-	chr6_1:90400476-90400495	Msa0897860:CDS	30.0%
ACATATTGCTGCAAATTTGA+AGG	+	chr6_1:90400564-90400583	None:intergenic	30.0%
AAAGAAAACGAAGGTAGAAA+AGG	+	chr6_1:90400714-90400733	None:intergenic	30.0%
GAATTCATTGACAAATGACT+CGG	-	chr6_1:90401313-90401332	Msa0897860:intron	30.0%
AGTTAACATGTCACAATACA+AGG	-	chr6_1:90401679-90401698	Msa0897860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	90399886	90404134	90399886	ID=Msa0897860;Name=Msa0897860
chr6_1	mRNA	90399886	90404134	90399886	ID=Msa0897860-mRNA-1;Parent=Msa0897860;Name=Msa0897860-mRNA-1;_AED=0.16;_eAED=0.16;_QI=122\|1\|0.75\|1\|0\|0\|4\|0\|652
chr6_1	exon	90399886	90400955	90399886	ID=Msa0897860-mRNA-1:exon:15401;Parent=Msa0897860-mRNA-1
chr6_1	exon	90401818	90401859	90401818	ID=Msa0897860-mRNA-1:exon:15400;Parent=Msa0897860-mRNA-1
chr6_1	exon	90402520	90403388	90402520	ID=Msa0897860-mRNA-1:exon:15399;Parent=Msa0897860-mRNA-1
chr6_1	exon	90404035	90404134	90404035	ID=Msa0897860-mRNA-1:exon:15398;Parent=Msa0897860-mRNA-1
chr6_1	five_prime_UTR	90404035	90404134	90404035	ID=Msa0897860-mRNA-1:five_prime_utr;Parent=Msa0897860-mRNA-1
chr6_1	five_prime_UTR	90403367	90403388	90403367	ID=Msa0897860-mRNA-1:five_prime_utr;Parent=Msa0897860-mRNA-1
chr6_1	CDS	90402520	90403366	90402520	ID=Msa0897860-mRNA-1:cds;Parent=Msa0897860-mRNA-1
chr6_1	CDS	90401818	90401859	90401818	ID=Msa0897860-mRNA-1:cds;Parent=Msa0897860-mRNA-1
chr6_1	CDS	90399886	90400955	90399886	ID=Msa0897860-mRNA-1:cds;Parent=Msa0897860-mRNA-1

Gene Sequence

>Msa0897860

ATGCTAGAAGAAACTAGGAACATCGCTTTGGAGTGTTCTTCTCGGATGCCTCCGCTTCCTTTTCTACCTTCGTTTTCTTTCATCATCAACACATTTCTCTTCCTTCCACTCTTCTTCTTAAGTCAATTTCAAAAACATGCCACTACTAATGCTGTGTCCACCACATCTTGTGAACCTTTTGGATGTGGAAATTTCAGCGATATTAGCTACCCATTCTGGAGTCTTAACATCCAACCAAGTTATTGCGGCCATCCAAACTTCAAGCTTGATTGTCAACATGGCAACTTAACTATTGACATCAAGTCCCAAAAGTTTCACATCCTTCATATAAATCAAATGTCTCAACTTTTGAGGATTGTAAGGGACGATTTATGGAGTTATGATGTTGATGTTGTGCATTCTTGTCCGAAGCAATATATTGATGTAAACTTAGATTTGCATTTCTTCAAGTACACTTCTAACAATGAAAACTATACTCTATTGTACGAGTGTGGTCTTCGTCCAAACTCAAACTCCTCTACGTTGAGTTCTGAAGTTTCTGAAGTGATTTCTTGCCTCATGGAGGGTAAAACTCGTGATGCATACCTAGTTTCAAGTGACAAATTGGTTGATTTCAATGTTATGGAGTGTAAGAATAGTATCACCTTTCCTGGCTTGAAGAATTCATTGACAAATGACTCGGATGTTTTAGGTGAAGGATTTGAGGTTGGGTGGAGTGATGTGGGAGAAGAAATATGTGGTGGTTGCATGAAATCTGGTAGGAAATGCGGATACAATACATCAGAAAATTCAGTTATGTGTCTCTTGCCGGAGAAATCCATGGCAGATGGAGTAACATCGTCAAATGAGAAGCATTTGAGCAGGCAAGCGAAAATGAAAATCATTCTAGGAAGTGCAGGTGCAGTATTTGTAGCATTATCCATATGTATCATTATCTTTTGTTTCAAATACAAGTCAACACTTCTTAAAAACCAAGACATTGAAAGATTCTTAAAAACTCATGAAGCCTTCACTGCTAGAAGATACAAATTCTCACATATCAAGAAAATGACCAACAACTTCAAAGTCGAATTAGGACAAGGTGGTTATGGTGCTGTATACAAAGGAAAGCTATCCGATGACAGCCCTGTGGCCGTAAAGATATTGAAGGCATCGAAAGGAAATGAAGATTTTATGAACGAGGTTTCTAGCATTACAAAAACCTCTCATGTTAATGTTGTTGCCCTTCTCGGATTTTGTTTTGAAGGTCGGAAAAAAGCTCTCATCTATGAATTAATGTCCAATGGTTCTCTTGACAAACTTATTTACAACAAGGGACCTGAAACACTTCCACCTTTGAGCTGGGAAATTCTTTATCAAATTGCTAAAGGGATAGCTCGAGGGTTGGAATATCTACATAGGGGATGTAGCACTCGAATTTTACATTTTGACATCAAACCACATAATATTCTCTTGGATGAGAATTTTTGTCCAAAGATATCAGATTTTGGGTTGGCAAGACTTTGCCCAAAGAAAGAGAGCATTATTTCGATGTCAAATGCAAGAGGGACAATGGGATATGTAGCTCCAGAGCTGTGGAATAGAAATTTTGGAGGAGTTTCACACAAGTCCGATGTTTATAGTTATGGAATGATGTTACTGGAAATGGTTGGAGGAAGAAAAAACCTTCACGCTGATGCAAGTCACACAAGTGGGATATACTTTCCTTATTGGGTATACAAAAGGCTTGATGTTGGCGGTGATTTGAGACCGGGTGAAGTCATTTCCCCAGAAGAAGATGAGATTGCAAAGAGAATGACCATCGTGGGTTTATGGTGCATTCAAACATTTCCAAATGATAGGCCTACAATGAGTAGAGTGATTGAAATGTTAGAAGGCAGAATGAATTTATTGGAAATACCACCCAAACCTATTCTTTCTTCTCCTACTAGACCTGTACCAGAATCTTCAAATTCATGA

Protein sequence

>Msa0897860

MLEETRNIALECSSRMPPLPFLPSFSFIINTFLFLPLFFLSQFQKHATTNAVSTTSCEPFGCGNFSDISYPFWSLNIQPSYCGHPNFKLDCQHGNLTIDIKSQKFHILHINQMSQLLRIVRDDLWSYDVDVVHSCPKQYIDVNLDLHFFKYTSNNENYTLLYECGLRPNSNSSTLSSEVSEVISCLMEGKTRDAYLVSSDKLVDFNVMECKNSITFPGLKNSLTNDSDVLGEGFEVGWSDVGEEICGGCMKSGRKCGYNTSENSVMCLLPEKSMADGVTSSNEKHLSRQAKMKIILGSAGAVFVALSICIIIFCFKYKSTLLKNQDIERFLKTHEAFTARRYKFSHIKKMTNNFKVELGQGGYGAVYKGKLSDDSPVAVKILKASKGNEDFMNEVSSITKTSHVNVVALLGFCFEGRKKALIYELMSNGSLDKLIYNKGPETLPPLSWEILYQIAKGIARGLEYLHRGCSTRILHFDIKPHNILLDENFCPKISDFGLARLCPKKESIISMSNARGTMGYVAPELWNRNFGGVSHKSDVYSYGMMLLEMVGGRKNLHADASHTSGIYFPYWVYKRLDVGGDLRPGEVISPEEDEIAKRMTIVGLWCIQTFPNDRPTMSRVIEMLEGRMNLLEIPPKPILSSPTRPVPESSNS*