AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930230 MtrunA17_Chr8g0392531 85.665 579 23 6 4 581 235 754 0.0 994
Msa0930230 MtrunA17_Chr6g0483461 60.309 582 166 7 3 581 233 752 0.0 687
Msa0930230 MtrunA17_Chr8g0340751 59.554 314 118 3 4 315 244 550 4.70e-134 407
Msa0930230 MtrunA17_Chr3g0140561 62.909 275 100 2 4 276 242 516 1.56e-129 395
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930230 AT1G17980.2 62.694 386 127 6 3 373 101 484 1.06e-161 474
Msa0930230 AT1G17980.1 62.694 386 127 6 3 373 228 611 2.79e-160 475
Msa0930230 AT4G32850.9 66.284 261 87 1 4 263 239 499 1.29e-127 392
Msa0930230 AT4G32850.5 66.284 261 87 1 4 263 239 499 1.29e-127 392
Msa0930230 AT4G32850.6 66.284 261 87 1 4 263 239 499 1.59e-127 391
Msa0930230 AT4G32850.2 66.284 261 87 1 4 263 239 499 1.59e-127 391
Msa0930230 AT4G32850.1 66.284 261 87 1 4 263 239 499 1.62e-127 391
Msa0930230 AT4G32850.3 66.284 261 87 1 4 263 239 499 1.76e-127 391
Msa0930230 AT4G32850.10 66.284 261 87 1 4 263 239 499 1.82e-127 391
Msa0930230 AT4G32850.7 66.284 261 87 1 4 263 239 499 2.03e-127 390
Msa0930230 AT4G32850.13 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.15 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.16 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.4 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.17 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.14 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.12 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.11 66.284 261 87 1 4 263 239 499 2.39e-127 390
Msa0930230 AT4G32850.8 66.284 261 87 1 4 263 239 499 2.90e-127 392
Msa0930230 AT2G25850.4 63.985 261 93 1 4 263 241 501 2.55e-126 390
Msa0930230 AT2G25850.3 63.985 261 93 1 4 263 241 501 3.11e-126 389
Msa0930230 AT2G25850.1 63.985 261 93 1 4 263 241 501 3.22e-126 389
Msa0930230 AT2G25850.9 63.985 261 93 1 4 263 241 501 3.47e-126 389
Msa0930230 AT2G25850.6 63.985 261 93 1 4 263 241 501 3.92e-126 389
Msa0930230 AT2G25850.7 63.985 261 93 1 4 263 241 501 3.92e-126 389
Msa0930230 AT2G25850.8 63.985 261 93 1 4 263 241 501 3.92e-126 389
Msa0930230 AT2G25850.5 63.985 261 93 1 4 263 241 501 3.92e-126 389
Msa0930230 AT2G25850.2 63.985 261 93 1 4 263 241 501 4.68e-126 389
Msa0930230 AT3G06560.1 33.171 205 122 5 4 207 217 407 1.42e-26 114

Find 240 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAATTATCACACCTTTC+TGG 0.144956 6_2:-79096095 None:intergenic
TCTTTGTCTACCTGAATATT+TGG 0.161580 6_2:-79096603 None:intergenic
CAAACTGTTCGCAGTCTTAA+TGG 0.187355 6_2:+79096546 Msa0930230:five_prime_UTR
TGCAAATACCCTTCCCTTCT+AGG 0.188796 6_2:-79094294 None:intergenic
CAGTAATGCTTTGTGCTATT+AGG 0.199866 6_2:+79097026 Msa0930230:CDS
AGAAATAAAGTCAAAGATTT+TGG 0.214683 6_2:+79099187 Msa0930230:CDS
TTCTGTCACACAGTGCCTTT+GGG 0.216132 6_2:+79100188 Msa0930230:intron
CGTTCAGAGCTTAGGGTTTC+CGG 0.219101 6_2:+79098707 Msa0930230:CDS
ATACTCAAAGTTTATACTTT+TGG 0.237895 6_2:+79094718 Msa0930230:five_prime_UTR
TGTTGGTGTCTCGATTCTTT+AGG 0.240500 6_2:+79096975 Msa0930230:CDS
TGAGTTAGATTGTGAAGATT+TGG 0.249542 6_2:+79095621 Msa0930230:intron
GATCTCTTGGACTTCAAGTT+TGG 0.256862 6_2:+79097053 Msa0930230:CDS
AGTTTACTCTCCTCTTGTTT+TGG 0.270084 6_2:+79094358 Msa0930230:five_prime_UTR
TTATCCTTGGGATTTCTTCT+AGG 0.277232 6_2:-79097079 None:intergenic
TTTCTGTCACACAGTGCCTT+TGG 0.279056 6_2:+79100187 Msa0930230:intron
CTAATAGCACAAAGCATTAC+TGG 0.280032 6_2:-79097025 None:intergenic
CAGGTTGAATTTCACCTCCT+TGG 0.283830 6_2:+79100532 Msa0930230:intron
TTTACACTGTTCTTACTTCA+TGG 0.285582 6_2:+79098463 Msa0930230:CDS
TTGTATTTCCTGGTGGTATT+CGG 0.285920 6_2:+79098645 Msa0930230:CDS
CAAGTTCAATGGCATCTCTT+TGG 0.287754 6_2:+79096293 Msa0930230:five_prime_UTR
ATCAAATTGTCCGCCTTCTT+TGG 0.290734 6_2:-79098513 None:intergenic
GTTGGTGTCTCGATTCTTTA+GGG 0.291373 6_2:+79096976 Msa0930230:CDS
AGTAATGCTTTGTGCTATTA+GGG 0.297888 6_2:+79097027 Msa0930230:CDS
TCAACTCATATATACTCTAA+TGG 0.298407 6_2:+79099295 Msa0930230:CDS
CATTGAGATGCGTGAAGTTA+TGG 0.304250 6_2:+79096715 Msa0930230:five_prime_UTR
GAACTTGGCAAACATCAATT+TGG 0.304572 6_2:+79099213 Msa0930230:CDS
GCATTTGGTTCCAAATATTC+AGG 0.305575 6_2:+79096593 Msa0930230:five_prime_UTR
TACAAGTAACATTGAAGTTC+AGG 0.315014 6_2:-79096822 None:intergenic
AGGTTGAATTTCACCTCCTT+GGG 0.315222 6_2:+79100533 Msa0930230:intron
TCAAGCTCCTCAGGTTCTTC+AGG 0.319284 6_2:-79099148 None:intergenic
GACTGATCAAATCTTGCATT+TGG 0.327355 6_2:+79096578 Msa0930230:five_prime_UTR
TGGCTTTAGGAAGATTTCTT+TGG 0.334957 6_2:+79096186 Msa0930230:intron
GGGTTAAGCAACCGCGATAT+CGG 0.339175 6_2:+79094982 Msa0930230:five_prime_UTR
GAGTTAGATTGTGAAGATTT+GGG 0.341588 6_2:+79095622 Msa0930230:intron
GGGTGCAACTCTGTCACTTC+TGG 0.341852 6_2:-79096237 None:intergenic
AATCGAGACACCAACATATT+AGG 0.341938 6_2:-79096968 None:intergenic
ATGTTGATGATCTTAGAAAT+TGG 0.345409 6_2:+79098164 Msa0930230:CDS
CAACTCATATATACTCTAAT+GGG 0.349594 6_2:+79099296 Msa0930230:CDS
ATCTCTTGGACTTCAAGTTT+GGG 0.350438 6_2:+79097054 Msa0930230:CDS
CTCACCCAGGTTACTTTGGA+TGG 0.351923 6_2:-79098677 None:intergenic
ATATGTCACGGGCAGGTTGC+AGG 0.353400 6_2:+79096878 Msa0930230:CDS
TTTATGCACAATTATCTTTG+TGG 0.356533 6_2:+79096322 Msa0930230:five_prime_UTR
TTCCGCTGTGGCACTGGTGC+TGG 0.359270 6_2:-79100354 None:intergenic
ATCTTAGAAATTGGAAAGGC+TGG 0.364295 6_2:+79098173 Msa0930230:CDS
GTTACTTTGGATGGGCATTT+AGG 0.364483 6_2:-79098668 None:intergenic
GATTGTGCGTGCAGTAATAA+TGG 0.372047 6_2:-79094752 None:intergenic
CCTCTCTGCCTCCCTCTAGC+AGG 0.372633 6_2:+79098843 Msa0930230:CDS
CGCCGGCTTGTATGAGAATC+AGG 0.373338 6_2:+79095203 Msa0930230:five_prime_UTR
TAAACTTTGAGTATAAAGTA+TGG 0.373416 6_2:-79094709 None:intergenic
GGATAAGCAGGAGTAATTAT+TGG 0.374734 6_2:-79097115 None:intergenic
CTTTGTCAAATCTGCGCATA+TGG 0.376017 6_2:+79099479 Msa0930230:CDS
TATCAACGTTCTTGCAAATC+AGG 0.378158 6_2:-79100671 None:intergenic
GCACAAAGCATTACTGGGTT+TGG 0.381859 6_2:-79097019 None:intergenic
CATTAGATGGTATTTATCCT+TGG 0.381933 6_2:-79097092 None:intergenic
AACATATTAGGCAGTGCATT+TGG 0.383440 6_2:-79096956 None:intergenic
AAAGTGTAGTAATTTGTTGA+TGG 0.390151 6_2:+79094951 Msa0930230:five_prime_UTR
ATTAGATGGTATTTATCCTT+GGG 0.393020 6_2:-79097091 None:intergenic
ATACCCGCCTTTGTATTTCC+TGG 0.393885 6_2:+79098635 Msa0930230:CDS
TTTCAGGGGAGTGTCCTTCT+GGG 0.394299 6_2:+79098981 Msa0930230:CDS
ATCGGGCAGCGCCAAAGGTT+AGG 0.397193 6_2:+79095000 Msa0930230:five_prime_UTR
AATTGTCCGCCTTCTTTGGC+AGG 0.398728 6_2:-79098509 None:intergenic
AGAATAAAGACGCACCTAGA+AGG 0.407611 6_2:+79094280 Msa0930230:five_prime_UTR
AGTTGGGAGCAAACAATGAT+AGG 0.410690 6_2:+79098765 Msa0930230:CDS
GAGATGGATATATTCATTCC+AGG 0.411288 6_2:-79098593 None:intergenic
TTATGCACAATTATCTTTGT+GGG 0.411391 6_2:+79096323 Msa0930230:five_prime_UTR
ATTGAGATGCGTGAAGTTAT+GGG 0.413969 6_2:+79096716 Msa0930230:five_prime_UTR
GAGTAATTATTGGCATTAGA+TGG 0.414055 6_2:-79097105 None:intergenic
TGGAGGTTAACAAGGCTGAT+TGG 0.416707 6_2:+79098068 Msa0930230:CDS
GTAAGCGACGTTCAGAGCTT+AGG 0.418314 6_2:+79098699 Msa0930230:CDS
ATTGTGCGTGCAGTAATAAT+GGG 0.419514 6_2:-79094751 None:intergenic
GGGTATTTGCATTGCACTAA+AGG 0.419637 6_2:+79094306 Msa0930230:five_prime_UTR
CTTGCGCCAGTTGACATTGA+AGG 0.420649 6_2:+79098207 Msa0930230:CDS
GGAGGTTAACAAGGCTGATT+GGG 0.424577 6_2:+79098069 Msa0930230:CDS
ATTATGGTTTACCTAATAAG+AGG 0.426995 6_2:-79100378 None:intergenic
CTTACTCACCCAGGTTACTT+TGG 0.427213 6_2:-79098681 None:intergenic
TAAGCGACGTTCAGAGCTTA+GGG 0.433261 6_2:+79098700 Msa0930230:CDS
TAGATTGAGAGGAACACTTA+TGG 0.435165 6_2:+79098389 Msa0930230:intron
GGTATTTGCATTGCACTAAA+GGG 0.440192 6_2:+79094307 Msa0930230:five_prime_UTR
AGAGGGAGGCAGAGAGGAAA+AGG 0.440261 6_2:-79098837 None:intergenic
ACAAAGATAATTGTGCATAA+AGG 0.440809 6_2:-79096320 None:intergenic
ATGGACCACACACAATCTTC+TGG 0.443788 6_2:-79099105 None:intergenic
ACCTTTCTGGTTGCATGTCT+AGG 0.447295 6_2:-79096082 None:intergenic
GCTCGGTTATCCCTAACCTT+TGG 0.448475 6_2:-79095011 None:intergenic
AGCTTTATCTGCTGAAGCTA+GGG 0.449201 6_2:+79100590 Msa0930230:three_prime_UTR
AATTTGTTGATGGGGAGCAC+TGG 0.449994 6_2:+79094961 Msa0930230:five_prime_UTR
CACAGCGGAAGCCTCTTATT+AGG 0.452711 6_2:+79100367 Msa0930230:CDS
CCTCGAATTCCGATGAGAAT+AGG 0.453630 6_2:-79094499 None:intergenic
TATATACCTTCAATGTCAAC+TGG 0.454373 6_2:-79098213 None:intergenic
AGCAGGGATGTTCATGAAGA+TGG 0.454788 6_2:+79098860 Msa0930230:CDS
AGATCATCTTCAAGCTCCTC+AGG 0.454935 6_2:-79099157 None:intergenic
TTACACTGTTCTTACTTCAT+GGG 0.455282 6_2:+79098464 Msa0930230:CDS
GAGCTTAGGGTTTCCGGCCA+TGG 0.456723 6_2:+79098713 Msa0930230:CDS
ACATATCATGAAGAAAAGTT+AGG 0.457439 6_2:-79096861 None:intergenic
AATGGAGCTGTAAGCTCAGC+AGG 0.457568 6_2:-79100318 None:intergenic
AAAGTGTAAACAACAGAAGA+AGG 0.459245 6_2:-79100287 None:intergenic
CCTATTCTCATCGGAATTCG+AGG 0.459561 6_2:+79094499 Msa0930230:five_prime_UTR
AAGGAAGCTCGAGCTGTAGA+TGG 0.460151 6_2:+79096771 Msa0930230:five_prime_UTR
GCTATTAGGGAAGGATCTCT+TGG 0.461527 6_2:+79097040 Msa0930230:CDS
GTAGGGAGGAAGTGCTTGGC+AGG 0.466400 6_2:+79095238 Msa0930230:five_prime_UTR
GGTTAAGCAACCGCGATATC+GGG 0.466728 6_2:+79094983 Msa0930230:five_prime_UTR
ATCAGGACGAAGCGATTTGT+AGG 0.468725 6_2:+79095220 Msa0930230:five_prime_UTR
CTTCTCGAGCTCACGCGTCT+TGG 0.475119 6_2:-79095070 None:intergenic
AAATCCCTTTGCACGGCTAA+CGG 0.475309 6_2:-79095651 None:intergenic
AAGTGTAGTAATTTGTTGAT+GGG 0.475401 6_2:+79094952 Msa0930230:five_prime_UTR
AGGAGAGTAAACTGAAAGAA+AGG 0.477102 6_2:-79094348 None:intergenic
ATCACTGGAACATGAGCATC+AGG 0.477906 6_2:-79096264 None:intergenic
GTCTCAAGAGGGTAAAGAGT+TGG 0.478740 6_2:+79098748 Msa0930230:CDS
AAGCTTTATCTGCTGAAGCT+AGG 0.478923 6_2:+79100589 Msa0930230:three_prime_UTR
AAGAACGTCAATATCTGCTC+CGG 0.479690 6_2:-79096050 None:intergenic
GTGATGGGTTTCAAGTTCAA+TGG 0.481598 6_2:+79096282 Msa0930230:five_prime_UTR
TCGGGCAGCGCCAAAGGTTA+GGG 0.482263 6_2:+79095001 Msa0930230:five_prime_UTR
GAATTCATGCACGGATAAGC+AGG 0.482783 6_2:-79097127 None:intergenic
TCTCAAGAGGGTAAAGAGTT+GGG 0.485029 6_2:+79098749 Msa0930230:CDS
ATAAACTGGGCATTGCTTGT+TGG 0.485761 6_2:+79096914 Msa0930230:CDS
AGAGGCTTCCGCTGTGGCAC+TGG 0.486863 6_2:-79100360 None:intergenic
GCGTACACGCAATGGAAACC+TGG 0.488459 6_2:+79098575 Msa0930230:CDS
AAAGGGATTTAACGAACAAC+TGG 0.491052 6_2:+79095664 Msa0930230:five_prime_UTR
CTCTCTGCCTCCCTCTAGCA+GGG 0.491602 6_2:+79098844 Msa0930230:CDS
AAAGCAAGCAGAAGATAGTC+GGG 0.493024 6_2:+79098793 Msa0930230:CDS
CTGCAAATAAGTGAAATTGA+TGG 0.494788 6_2:-79100728 None:intergenic
GAAAGCAAGCAGAAGATAGT+CGG 0.498683 6_2:+79098792 Msa0930230:CDS
AATCAGCATGAAATGATGAA+TGG 0.499384 6_2:-79094583 None:intergenic
TCTTTAGGGTATACACTCAA+TGG 0.504290 6_2:+79096990 Msa0930230:CDS
GTATATTGCGGCGTTTCACA+TGG 0.504676 6_2:-79098616 None:intergenic
GATGCTCATGTTCCAGTGAT+GGG 0.507414 6_2:+79096267 Msa0930230:five_prime_UTR
CTCCTCAGGTTCTTCAGGAA+AGG 0.508012 6_2:-79099143 None:intergenic
AAATATATATATTCTTAGAA+TGG 0.509644 6_2:-79094887 None:intergenic
TTGAACTTGAAACCCATCAC+TGG 0.510031 6_2:-79096279 None:intergenic
GGAACATGAGCATCAGGCAC+TGG 0.510601 6_2:-79096258 None:intergenic
GAGGCAGAGAGGAAAAGGAC+TGG 0.513822 6_2:-79098832 None:intergenic
AGAACGTCAATATCTGCTCC+GGG 0.514026 6_2:-79096049 None:intergenic
TGATGCTCATGTTCCAGTGA+TGG 0.514204 6_2:+79096266 Msa0930230:five_prime_UTR
GAATAAAGACGCACCTAGAA+GGG 0.516025 6_2:+79094281 Msa0930230:five_prime_UTR
ATTTGTTGATGGGGAGCACT+GGG 0.519969 6_2:+79094962 Msa0930230:five_prime_UTR
GCGGCGTTTCACATGGGAGA+TGG 0.520378 6_2:-79098609 None:intergenic
TCTGTCACACAGTGCCTTTG+GGG 0.520528 6_2:+79100189 Msa0930230:intron
CTTCATGATATGTCACGGGC+AGG 0.523971 6_2:+79096871 Msa0930230:exon
AATCTTATAAGAATTATTTG+CGG 0.524889 6_2:+79098122 Msa0930230:CDS
CAAGGAGTTCCTGCCAAAGA+AGG 0.525214 6_2:+79098500 Msa0930230:CDS
ATTTGTAGGGAGGAAGTGCT+TGG 0.525485 6_2:+79095234 Msa0930230:five_prime_UTR
CTTCAGTGTCATCCACATCC+TGG 0.537994 6_2:+79098416 Msa0930230:CDS
AATGCCCATCCAAAGTAACC+TGG 0.539596 6_2:+79098672 Msa0930230:CDS
GCAGTGCATTTGGATATAGC+TGG 0.539999 6_2:-79096946 None:intergenic
TTCAGGGGAGTGTCCTTCTG+GGG 0.542622 6_2:+79098982 Msa0930230:CDS
GCGATATCGGGCAGCGCCAA+AGG 0.546834 6_2:+79094995 Msa0930230:five_prime_UTR
GTTGGTCCGCTCAATGAGAT+CGG 0.547111 6_2:-79095033 None:intergenic
AAAACCGTTAGCCGTGCAAA+GGG 0.548467 6_2:+79095647 Msa0930230:five_prime_UTR
GATATTGACGTTCTTTGTGT+GGG 0.550757 6_2:+79096058 Msa0930230:five_prime_UTR
TCACCCAGGTTACTTTGGAT+GGG 0.551473 6_2:-79098676 None:intergenic
TCTTAGAAATTGGAAAGGCT+GGG 0.551903 6_2:+79098174 Msa0930230:CDS
CTGTCAATGCGTACACGCAA+TGG 0.552154 6_2:+79098567 Msa0930230:CDS
AGATATTGACGTTCTTTGTG+TGG 0.554128 6_2:+79096057 Msa0930230:five_prime_UTR
CAAAACCGTTAGCCGTGCAA+AGG 0.554179 6_2:+79095646 Msa0930230:five_prime_UTR
ATGCTTTGTGCTATTAGGGA+AGG 0.556768 6_2:+79097031 Msa0930230:CDS
TTAGGCTATGGAGGTTAACA+AGG 0.557416 6_2:+79098060 Msa0930230:intron
ATGAAGTAAGAACAGTGTAA+AGG 0.558232 6_2:-79098461 None:intergenic
AGGCAGAGAGGAAAAGGACT+GGG 0.558691 6_2:-79098831 None:intergenic
CCACCAGGAAATACAAAGGC+GGG 0.565336 6_2:-79098638 None:intergenic
CTGTCACACAGTGCCTTTGG+GGG 0.565439 6_2:+79100190 Msa0930230:intron
GTTTAGTACTTGCAAGACGC+CGG 0.565736 6_2:+79095186 Msa0930230:intron
TAATAGCACAAAGCATTACT+GGG 0.568662 6_2:-79097024 None:intergenic
ATAGGACTTGGATTTATCAC+AGG 0.569485 6_2:+79096497 Msa0930230:intron
TATCAGTAGCAGCAAGTAGA+GGG 0.570624 6_2:-79099048 None:intergenic
AAAGACGCACCTAGAAGGGA+AGG 0.571331 6_2:+79094285 Msa0930230:five_prime_UTR
GTTCGTTAAATCCCTTTGCA+CGG 0.573155 6_2:-79095658 None:intergenic
AGTGTAGTAATTTGTTGATG+GGG 0.573507 6_2:+79094953 Msa0930230:five_prime_UTR
GGGTATACACTCAATGGCGT+TGG 0.578720 6_2:+79096996 Msa0930230:CDS
CAAGAACTAGCAATGCTGAC+AGG 0.579738 6_2:-79098887 None:intergenic
TATGACAGAGGAATTTCAGA+GGG 0.579932 6_2:+79097183 Msa0930230:CDS
CTTTGAACATCTAGATTGAG+AGG 0.582804 6_2:+79098378 Msa0930230:intron
TTTGGCGCTGCCCGATATCG+CGG 0.584549 6_2:-79094993 None:intergenic
CTATCAGTAGCAGCAAGTAG+AGG 0.584655 6_2:-79099049 None:intergenic
TTGGCGACATCATATTCAGT+TGG 0.584796 6_2:-79095051 None:intergenic
TCGAGGTTCAACTTCAACAA+CGG 0.589070 6_2:+79094516 Msa0930230:five_prime_UTR
AGTGCTTGGCAGGCTAGACC+AGG 0.589329 6_2:+79095248 Msa0930230:five_prime_UTR
GAACATGAGCATCAGGCACT+GGG 0.589802 6_2:-79096257 None:intergenic
ACCTAGACATGCAACCAGAA+AGG 0.590035 6_2:+79096081 Msa0930230:five_prime_UTR
ACGATACAAACCAAAACAAG+AGG 0.593878 6_2:-79094368 None:intergenic
CATCTTCACTTTCACCTCGA+CGG 0.595413 6_2:+79094544 Msa0930230:five_prime_UTR
TCAGGACGAAGCGATTTGTA+GGG 0.596039 6_2:+79095221 Msa0930230:five_prime_UTR
ATACAAAGGCGGGTATATTG+CGG 0.599871 6_2:-79098628 None:intergenic
CAAATCACACCTATTCTCAT+CGG 0.602577 6_2:+79094490 Msa0930230:five_prime_UTR
CATTTAGGCCGAATACCACC+AGG 0.602857 6_2:-79098653 None:intergenic
CCCGCCTTTGTATTTCCTGG+TGG 0.603912 6_2:+79098638 Msa0930230:CDS
ATGGGTCTGCAACGTAAGCA+AGG 0.604283 6_2:+79098482 Msa0930230:CDS
TTTATCTGCTGAAGCTAGGG+GGG 0.604732 6_2:+79100593 Msa0930230:three_prime_UTR
TGTTTATTCAAATGTATGCA+AGG 0.605026 6_2:+79096752 Msa0930230:five_prime_UTR
GATTTCTTAATGATATACCA+TGG 0.607233 6_2:-79100239 None:intergenic
TTCATGAACATCCCTGCTAG+AGG 0.609618 6_2:-79098855 None:intergenic
AAATGCACTGCCTAATATGT+TGG 0.610636 6_2:+79096958 Msa0930230:CDS
GTCCTGATTCTCATACAAGC+CGG 0.611765 6_2:-79095205 None:intergenic
AAGTTATGGGCTAAGCGTCG+TGG 0.611953 6_2:+79096729 Msa0930230:five_prime_UTR
AAGTGTAAACAACAGAAGAA+GGG 0.612416 6_2:-79100286 None:intergenic
TCATGAACATCCCTGCTAGA+GGG 0.618224 6_2:-79098854 None:intergenic
AACTCATATATACTCTAATG+GGG 0.619528 6_2:+79099297 Msa0930230:CDS
ATGCCCATCCAAAGTAACCT+GGG 0.622591 6_2:+79098673 Msa0930230:CDS
AAGGCTTGATGTACCTCACA+TGG 0.622782 6_2:-79099124 None:intergenic
GGTTGAATTTCACCTCCTTG+GGG 0.623561 6_2:+79100534 Msa0930230:intron
AGCCTTTCCTGAAGAACCTG+AGG 0.626329 6_2:+79099141 Msa0930230:CDS
GCTTTATCTGCTGAAGCTAG+GGG 0.628411 6_2:+79100591 Msa0930230:three_prime_UTR
TATATTGCGGCGTTTCACAT+GGG 0.628891 6_2:-79098615 None:intergenic
CTTTATCTGCTGAAGCTAGG+GGG 0.631770 6_2:+79100592 Msa0930230:three_prime_UTR
CTTACAGCTCCATTGTTCAG+TGG 0.632852 6_2:+79100327 Msa0930230:CDS
TTGGTCTCTCTATCCCCAGA+AGG 0.633023 6_2:-79098995 None:intergenic
TCAAGCAGAAAAGTCTCAAG+AGG 0.634015 6_2:+79098736 Msa0930230:CDS
CCTGCTAGAGGGAGGCAGAG+AGG 0.636042 6_2:-79098843 None:intergenic
TGAAAGAAAGGAACGTGGAG+CGG 0.636723 6_2:-79094336 None:intergenic
GCTGGATTTCCACTGAACAA+TGG 0.638532 6_2:-79100336 None:intergenic
GGAGTTCCTGCCAAAGAAGG+CGG 0.639166 6_2:+79098503 Msa0930230:CDS
GGACGAAGCGATTTGTAGGG+AGG 0.639484 6_2:+79095224 Msa0930230:five_prime_UTR
TCTGGGGATAGAGAGACCAA+TGG 0.642628 6_2:+79098998 Msa0930230:CDS
GATGATCTTAGAAATTGGAA+AGG 0.644573 6_2:+79098169 Msa0930230:CDS
GGACTCTACAAAGTCTGCAG+TGG 0.650459 6_2:+79099234 Msa0930230:CDS
TCCGCTCAATGAGATCGGCT+CGG 0.650558 6_2:-79095028 None:intergenic
GGATCCTAGAAGAAATCCCA+AGG 0.650740 6_2:+79097075 Msa0930230:CDS
AAGAAAGGAACGTGGAGCGG+AGG 0.653539 6_2:-79094333 None:intergenic
GTCATCCAGAAGATTGTGTG+TGG 0.654869 6_2:+79099100 Msa0930230:CDS
TACATTGCGTGTTATGACAG+AGG 0.656944 6_2:+79097171 Msa0930230:CDS
TGCTGCGATTAGAGCCGTCG+AGG 0.659317 6_2:-79094558 None:intergenic
TGAACATCCCTGCTAGAGGG+AGG 0.659467 6_2:-79098851 None:intergenic
CAAGACGCGTGAGCTCGAGA+AGG 0.662270 6_2:+79095071 Msa0930230:five_prime_UTR
CTAATAAGAGGCTTCCGCTG+TGG 0.663602 6_2:-79100366 None:intergenic
AAGACGCACCTAGAAGGGAA+GGG 0.667945 6_2:+79094286 Msa0930230:five_prime_UTR
TTGTGCGTGCAGTAATAATG+GGG 0.669036 6_2:-79094750 None:intergenic
GAGGGGAGATGAAATATGTG+AGG 0.673344 6_2:+79097201 Msa0930230:CDS
TGAACGTCGCTTACTCACCC+AGG 0.678323 6_2:-79098690 None:intergenic
AATACCACCAGGAAATACAA+AGG 0.679279 6_2:-79098642 None:intergenic
TTATGACAGAGGAATTTCAG+AGG 0.679308 6_2:+79097182 Msa0930230:CDS
ACCGAGCCGATCTCATTGAG+CGG 0.681660 6_2:+79095027 Msa0930230:five_prime_UTR
ACCACCAGGAAATACAAAGG+CGG 0.682566 6_2:-79098639 None:intergenic
CAAGCAGAAAAGTCTCAAGA+GGG 0.682829 6_2:+79098737 Msa0930230:CDS
TTGTAGCTAGAATTCATGCA+CGG 0.690937 6_2:-79097136 None:intergenic
GATACTGCAGATAATAAGCG+AGG 0.693888 6_2:+79100690 Msa0930230:three_prime_UTR
ATCCAGCACCAGTGCCACAG+CGG 0.695774 6_2:+79100352 Msa0930230:CDS
ACTCATATATACTCTAATGG+GGG 0.698755 6_2:+79099298 Msa0930230:CDS
GATTGTGTGTGGTCCATGTG+AGG 0.722355 6_2:+79099111 Msa0930230:CDS
GAACGTCAATATCTGCTCCG+GGG 0.726104 6_2:-79096048 None:intergenic
ATGACAGAGGAATTTCAGAG+GGG 0.736796 6_2:+79097184 Msa0930230:CDS
TAAACTGAAAGAAAGGAACG+TGG 0.741363 6_2:-79094341 None:intergenic
ATATCATTAAGAAATCAAAG+TGG 0.744730 6_2:+79100246 Msa0930230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATATTCTTAGAA+TGG - chr6_2:79094890-79094909 None:intergenic 10.0%
!!! ATTTTTAATTCAAATTTTGT+AGG + chr6_2:79096018-79096037 Msa0930230:intron 10.0%
!!! TTATTTTAATACTTTTTATG+GGG + chr6_2:79097333-79097352 Msa0930230:intron 10.0%
!!! TATTTTAATCTATAACAAAT+GGG - chr6_2:79097449-79097468 None:intergenic 10.0%
!!! TTATTTTAATCTATAACAAA+TGG - chr6_2:79097450-79097469 None:intergenic 10.0%
!! AAAAAAAATAATAAACAAAC+AGG + chr6_2:79097731-79097750 Msa0930230:intron 10.0%
!! AAATAAAAATTAAGGATATA+TGG - chr6_2:79100169-79100188 None:intergenic 10.0%
!! ATAAAAAGAAGAAATTACAA+AGG - chr6_2:79094642-79094661 None:intergenic 15.0%
!! TAGAGTAATTTGAATTATTT+AGG + chr6_2:79095410-79095429 Msa0930230:intron 15.0%
!! AGAGTAATTTGAATTATTTA+GGG + chr6_2:79095411-79095430 Msa0930230:intron 15.0%
!! ATTGAAAATAATGAATCTAT+TGG - chr6_2:79095882-79095901 None:intergenic 15.0%
!! ATAAGTAAATACAATATTTC+CGG - chr6_2:79095946-79095965 None:intergenic 15.0%
!!! TATTCAATCATTTATTTTGT+TGG + chr6_2:79095980-79095999 Msa0930230:intron 15.0%
!!! TATTTTAATACTTTTTATGG+GGG + chr6_2:79097334-79097353 Msa0930230:intron 15.0%
!!! TTGAAGAAAATCATTTTTAA+TGG - chr6_2:79097612-79097631 None:intergenic 15.0%
!! AAAAATGAGTTTCTTAAAAA+TGG - chr6_2:79097662-79097681 None:intergenic 15.0%
!!! AAAAAAGAGAAAAAAAGTAT+TGG - chr6_2:79097983-79098002 None:intergenic 15.0%
!! TTCTTATAAGATTCAAAAAA+CGG - chr6_2:79098115-79098134 None:intergenic 15.0%
!! AATCTTATAAGAATTATTTG+CGG + chr6_2:79098122-79098141 Msa0930230:CDS 15.0%
!! TTTATATACATAACCTAATT+TGG + chr6_2:79098350-79098369 Msa0930230:intron 15.0%
!! CTTAATATATATCTTACATT+TGG + chr6_2:79099345-79099364 Msa0930230:intron 15.0%
!! CTAAATTATAACAAAAAACT+AGG - chr6_2:79099510-79099529 None:intergenic 15.0%
!! AAAATCAACAACAATTTATA+AGG - chr6_2:79099978-79099997 None:intergenic 15.0%
!!! ATGCTGATTTAGTTTTTTTA+GGG + chr6_2:79094597-79094616 Msa0930230:five_prime_UTR 20.0%
!! TAAACTTTGAGTATAAAGTA+TGG - chr6_2:79094712-79094731 None:intergenic 20.0%
!!! ATACTCAAAGTTTATACTTT+TGG + chr6_2:79094718-79094737 Msa0930230:five_prime_UTR 20.0%
!!! ATTTTATGAACAGAAGATTT+TGG + chr6_2:79095815-79095834 Msa0930230:intron 20.0%
!! AAATGATTGAATAAATACAC+TGG - chr6_2:79095973-79095992 None:intergenic 20.0%
!!! CATTTTTAAAAGTTGACTTA+GGG + chr6_2:79096119-79096138 Msa0930230:intron 20.0%
!!! TAAGTAATACTGTTTGTTAT+TGG + chr6_2:79096474-79096493 Msa0930230:intron 20.0%
!!! ATTATTGTTAAGAAAAGCAT+AGG + chr6_2:79097498-79097517 Msa0930230:intron 20.0%
!! AAGAGAGAAAACATAATTTA+TGG - chr6_2:79097589-79097608 None:intergenic 20.0%
!!! ATAAGGTTTCTGATATTTTT+AGG + chr6_2:79098042-79098061 Msa0930230:intron 20.0%
!! AAATAAATGAAACTACAAAG+AGG - chr6_2:79098253-79098272 None:intergenic 20.0%
!!! TTTATTTTCTCAAAAAGAGT+TGG + chr6_2:79098299-79098318 Msa0930230:intron 20.0%
!!! TTATTTTCTCAAAAAGAGTT+GGG + chr6_2:79098300-79098319 Msa0930230:intron 20.0%
!!! AGAAATAAAGTCAAAGATTT+TGG + chr6_2:79099187-79099206 Msa0930230:CDS 20.0%
!! AATAAAAATTGACAGCAATT+TGG + chr6_2:79099585-79099604 Msa0930230:intron 20.0%
!! TAATTAACCACATATTCAAA+CGG - chr6_2:79099621-79099640 None:intergenic 20.0%
!! GATGGATAATGAATATAATA+AGG + chr6_2:79099650-79099669 Msa0930230:intron 20.0%
!! GTTATTGACATTAAAAATTG+TGG + chr6_2:79099854-79099873 Msa0930230:intron 20.0%
!! GATGGTCAATAAATATAATA+AGG - chr6_2:79099917-79099936 None:intergenic 20.0%
!! GGTTAATTATATTTAGTAGA+TGG - chr6_2:79099935-79099954 None:intergenic 20.0%
!! GTGACAGAAAATAAAAATTA+AGG - chr6_2:79100177-79100196 None:intergenic 20.0%
!! CATGGTTGAAATAAAAATAA+GGG - chr6_2:79100224-79100243 None:intergenic 20.0%
!! ATATCATTAAGAAATCAAAG+TGG + chr6_2:79100246-79100265 Msa0930230:CDS 20.0%
!! TAATTATTCTTCTTATTCTC+AGG + chr6_2:79100513-79100532 Msa0930230:intron 20.0%
!!! ATTCTAACTTTTTTCCTTAC+AGG + chr6_2:79094438-79094457 Msa0930230:intron 25.0%
!!! CATGCTGATTTAGTTTTTTT+AGG + chr6_2:79094596-79094615 Msa0930230:five_prime_UTR 25.0%
!!! ACTAAAAAGTTTGTTGTTGA+AGG - chr6_2:79094668-79094687 None:intergenic 25.0%
!!! ATTGTTTTGTACGTTTCTAT+TGG + chr6_2:79094834-79094853 Msa0930230:five_prime_UTR 25.0%
!!! AAAGTGTAGTAATTTGTTGA+TGG + chr6_2:79094951-79094970 Msa0930230:five_prime_UTR 25.0%
!!! AAGTGTAGTAATTTGTTGAT+GGG + chr6_2:79094952-79094971 Msa0930230:five_prime_UTR 25.0%
! CTTGGAAATATTTCCAAATA+AGG - chr6_2:79095493-79095512 None:intergenic 25.0%
!! AATGCCATGATTTTTACTTT+TGG + chr6_2:79095698-79095717 Msa0930230:five_prime_UTR 25.0%
! TGATCCAAAAGTAAAAATCA+TGG - chr6_2:79095705-79095724 None:intergenic 25.0%
! AAATAATGAATCTATTGGAG+TGG - chr6_2:79095877-79095896 None:intergenic 25.0%
!!! CCTAAGTCAACTTTTAAAAA+TGG - chr6_2:79096121-79096140 None:intergenic 25.0%
!!! CCATTTTTAAAAGTTGACTT+AGG + chr6_2:79096118-79096137 Msa0930230:intron 25.0%
!!! ATTCAGACAACAATTTTAGT+GGG - chr6_2:79096166-79096185 None:intergenic 25.0%
!! AATTCAGACAACAATTTTAG+TGG - chr6_2:79096167-79096186 None:intergenic 25.0%
! ACTAAAATTGTTGTCTGAAT+TGG + chr6_2:79096166-79096185 Msa0930230:intron 25.0%
! ACAAAGATAATTGTGCATAA+AGG - chr6_2:79096323-79096342 None:intergenic 25.0%
! TTTATGCACAATTATCTTTG+TGG + chr6_2:79096322-79096341 Msa0930230:five_prime_UTR 25.0%
! TTATGCACAATTATCTTTGT+GGG + chr6_2:79096323-79096342 Msa0930230:five_prime_UTR 25.0%
! TAACAAACAGTATTACTTAG+TGG - chr6_2:79096473-79096492 None:intergenic 25.0%
!!! AATACTGTTTGTTATTGGAT+AGG + chr6_2:79096479-79096498 Msa0930230:intron 25.0%
!! AGACAAAGATAGAACTTTTA+CGG + chr6_2:79096617-79096636 Msa0930230:intron 25.0%
! TGTTTATTCAAATGTATGCA+AGG + chr6_2:79096752-79096771 Msa0930230:five_prime_UTR 25.0%
! ACATATCATGAAGAAAAGTT+AGG - chr6_2:79096864-79096883 None:intergenic 25.0%
! ATTAGATGGTATTTATCCTT+GGG - chr6_2:79097094-79097113 None:intergenic 25.0%
!!! TTTTTATCTTTTTGAGCAGT+AGG - chr6_2:79097370-79097389 None:intergenic 25.0%
! ACTCTCACAATATTAGTAAT+AGG + chr6_2:79097422-79097441 Msa0930230:intron 25.0%
! CTCTCACAATATTAGTAATA+GGG + chr6_2:79097423-79097442 Msa0930230:intron 25.0%
! AGAGTATAGAGTGAAAATTT+GGG - chr6_2:79097800-79097819 None:intergenic 25.0%
! TAGAGTATAGAGTGAAAATT+TGG - chr6_2:79097801-79097820 None:intergenic 25.0%
!!! CATTTGTGTTGCTTAATATA+AGG + chr6_2:79098025-79098044 Msa0930230:intron 25.0%
!!! TTTCTGATATTTTTAGGCTA+TGG + chr6_2:79098048-79098067 Msa0930230:intron 25.0%
! TAAGATTCAAAAAACGGATA+GGG - chr6_2:79098109-79098128 None:intergenic 25.0%
! ATAAGATTCAAAAAACGGAT+AGG - chr6_2:79098110-79098129 None:intergenic 25.0%
!!! ATGTTGATGATCTTAGAAAT+TGG + chr6_2:79098164-79098183 Msa0930230:CDS 25.0%
! TGAGAAAATAAAACAGAAAG+AGG - chr6_2:79098291-79098310 None:intergenic 25.0%
!! TATTTTCTCAAAAAGAGTTG+GGG + chr6_2:79098301-79098320 Msa0930230:intron 25.0%
! GGTTATGTATATAAACAAAG+AGG - chr6_2:79098345-79098364 None:intergenic 25.0%
!!! AAACCTGATTTGAATTTTTC+AGG + chr6_2:79098965-79098984 Msa0930230:CDS 25.0%
!!! AACCTGATTTGAATTTTTCA+GGG + chr6_2:79098966-79098985 Msa0930230:CDS 25.0%
!!! TAATTTTGAAGAAGCTGAAA+AGG + chr6_2:79099075-79099094 Msa0930230:CDS 25.0%
!! AATAAAGTCAAAGATTTTGG+TGG + chr6_2:79099190-79099209 Msa0930230:CDS 25.0%
!!! ATAAAGTCAAAGATTTTGGT+GGG + chr6_2:79099191-79099210 Msa0930230:CDS 25.0%
!!! TTTTCCTTTTGAGAAAAAAC+AGG - chr6_2:79099268-79099287 None:intergenic 25.0%
! TCAACTCATATATACTCTAA+TGG + chr6_2:79099295-79099314 Msa0930230:CDS 25.0%
! CAACTCATATATACTCTAAT+GGG + chr6_2:79099296-79099315 Msa0930230:CDS 25.0%
! AACTCATATATACTCTAATG+GGG + chr6_2:79099297-79099316 Msa0930230:CDS 25.0%
! ACTCAAAAACTTGAAATTCA+TGG - chr6_2:79099738-79099757 None:intergenic 25.0%
!!! GAATTTCAAGTTTTTGAGTA+TGG + chr6_2:79099739-79099758 Msa0930230:intron 25.0%
! CATTATTTGGATGGTTATAA+TGG - chr6_2:79099772-79099791 None:intergenic 25.0%
! ACAGTTAAACATTATTTGGA+TGG - chr6_2:79099781-79099800 None:intergenic 25.0%
! ACGTACAGTTAAACATTATT+TGG - chr6_2:79099785-79099804 None:intergenic 25.0%
! TATCTATTAACCATAACTTG+CGG + chr6_2:79099807-79099826 Msa0930230:intron 25.0%
! AAATATACACCTAATAATCG+TGG + chr6_2:79099832-79099851 Msa0930230:intron 25.0%
! GTTAATGTAGTTCAAATGTA+TGG - chr6_2:79099956-79099975 None:intergenic 25.0%
! CCATGGTTGAAATAAAAATA+AGG - chr6_2:79100225-79100244 None:intergenic 25.0%
!!! CCTTATTTTTATTTCAACCA+TGG + chr6_2:79100222-79100241 Msa0930230:CDS 25.0%
! GATTTCTTAATGATATACCA+TGG - chr6_2:79100242-79100261 None:intergenic 25.0%
! ATTATGGTTTACCTAATAAG+AGG - chr6_2:79100381-79100400 None:intergenic 25.0%
!! GATTTCCATTTTCTTGTATT+TGG + chr6_2:79100438-79100457 Msa0930230:intron 25.0%
TGAGATTGAAATGAAATGTG+TGG - chr6_2:79094401-79094420 None:intergenic 30.0%
AATCAGCATGAAATGATGAA+TGG - chr6_2:79094586-79094605 None:intergenic 30.0%
!! AGTGTAGTAATTTGTTGATG+GGG + chr6_2:79094953-79094972 Msa0930230:five_prime_UTR 30.0%
GAGAATAATCAATTCGCTAT+AGG - chr6_2:79095110-79095129 None:intergenic 30.0%
TCAACAAAATAAATCCAACC+TGG - chr6_2:79095269-79095288 None:intergenic 30.0%
TTGGAAATATTTCCAAGTTG+AGG + chr6_2:79095496-79095515 Msa0930230:intron 30.0%
! TGGAAATATTTCCAAGTTGA+GGG + chr6_2:79095497-79095516 Msa0930230:intron 30.0%
CATTTCACGTTATACCATAT+TGG + chr6_2:79095544-79095563 Msa0930230:intron 30.0%
GTTATACCATATTGGAAATG+TGG + chr6_2:79095552-79095571 Msa0930230:intron 30.0%
CCAAAATATATGAGTTCATG+AGG - chr6_2:79095585-79095604 None:intergenic 30.0%
! CCTCATGAACTCATATATTT+TGG + chr6_2:79095582-79095601 Msa0930230:intron 30.0%
TGAGTTAGATTGTGAAGATT+TGG + chr6_2:79095621-79095640 Msa0930230:intron 30.0%
GAGTTAGATTGTGAAGATTT+GGG + chr6_2:79095622-79095641 Msa0930230:intron 30.0%
! GCATACAAGAAAATTTTGGA+AGG - chr6_2:79095756-79095775 None:intergenic 30.0%
TCTTTCCATATCAAATGTGA+TGG + chr6_2:79095907-79095926 Msa0930230:intron 30.0%
TTTGACCATCACATTTGATA+TGG - chr6_2:79095915-79095934 None:intergenic 30.0%
AAATGTGATGGTCAAATTTG+TGG + chr6_2:79095919-79095938 Msa0930230:intron 30.0%
! ATTCAAATTTTGTAGGTGCA+TGG + chr6_2:79096025-79096044 Msa0930230:intron 30.0%
TTCCATAAATCACTTACTTC+GGG - chr6_2:79096354-79096373 None:intergenic 30.0%
CTTCCATAAATCACTTACTT+CGG - chr6_2:79096355-79096374 None:intergenic 30.0%
TCTTTGTCTACCTGAATATT+TGG - chr6_2:79096606-79096625 None:intergenic 30.0%
TACAAGTAACATTGAAGTTC+AGG - chr6_2:79096825-79096844 None:intergenic 30.0%
! CTTTTCTTCATGATATGTCA+CGG + chr6_2:79096866-79096885 Msa0930230:exon 30.0%
! TTTTCTTCATGATATGTCAC+GGG + chr6_2:79096867-79096886 Msa0930230:exon 30.0%
!! TTTTCTTGGTGGTATAAACT+GGG + chr6_2:79096901-79096920 Msa0930230:CDS 30.0%
! TAATAGCACAAAGCATTACT+GGG - chr6_2:79097027-79097046 None:intergenic 30.0%
! AGTAATGCTTTGTGCTATTA+GGG + chr6_2:79097027-79097046 Msa0930230:CDS 30.0%
CATTAGATGGTATTTATCCT+TGG - chr6_2:79097095-79097114 None:intergenic 30.0%
GAGTAATTATTGGCATTAGA+TGG - chr6_2:79097108-79097127 None:intergenic 30.0%
GATGATCTTAGAAATTGGAA+AGG + chr6_2:79098169-79098188 Msa0930230:CDS 30.0%
TATATACCTTCAATGTCAAC+TGG - chr6_2:79098216-79098235 None:intergenic 30.0%
! ATTTTCTCAAAAAGAGTTGG+GGG + chr6_2:79098302-79098321 Msa0930230:intron 30.0%
!! GATTTTTCTGAAAAATCACC+AGG - chr6_2:79098437-79098456 None:intergenic 30.0%
ATGAAGTAAGAACAGTGTAA+AGG - chr6_2:79098464-79098483 None:intergenic 30.0%
TTTACACTGTTCTTACTTCA+TGG + chr6_2:79098463-79098482 Msa0930230:CDS 30.0%
TTACACTGTTCTTACTTCAT+GGG + chr6_2:79098464-79098483 Msa0930230:CDS 30.0%
!! ACCTGATTTGAATTTTTCAG+GGG + chr6_2:79098967-79098986 Msa0930230:CDS 30.0%
!!! AGAACCTGTTTTTTCTCAAA+AGG + chr6_2:79099261-79099280 Msa0930230:CDS 30.0%
ACTCATATATACTCTAATGG+GGG + chr6_2:79099298-79099317 Msa0930230:CDS 30.0%
TAATTAAGTTCATCTGCAGA+TGG - chr6_2:79099692-79099711 None:intergenic 30.0%
GTTAATGACATTCAAAATCG+TGG - chr6_2:79099716-79099735 None:intergenic 30.0%
TGTCAATAACCACGATTATT+AGG - chr6_2:79099844-79099863 None:intergenic 30.0%
AAGTGTAAACAACAGAAGAA+GGG - chr6_2:79100289-79100308 None:intergenic 30.0%
AAAGTGTAAACAACAGAAGA+AGG - chr6_2:79100290-79100309 None:intergenic 30.0%
CATCGTTCAACAACTTATTA+TGG - chr6_2:79100397-79100416 None:intergenic 30.0%
CAAAGCCAAATACAAGAAAA+TGG - chr6_2:79100446-79100465 None:intergenic 30.0%
!! CATTTTCTTGTATTTGGCTT+TGG + chr6_2:79100444-79100463 Msa0930230:intron 30.0%
TTGGAGTTTATGTCATGATT+AGG + chr6_2:79100463-79100482 Msa0930230:intron 30.0%
CTGCAAATAAGTGAAATTGA+TGG - chr6_2:79100731-79100750 None:intergenic 30.0%
GGTATTTGCATTGCACTAAA+GGG + chr6_2:79094307-79094326 Msa0930230:five_prime_UTR 35.0%
TAAACTGAAAGAAAGGAACG+TGG - chr6_2:79094344-79094363 None:intergenic 35.0%
AGGAGAGTAAACTGAAAGAA+AGG - chr6_2:79094351-79094370 None:intergenic 35.0%
!! AGTTTACTCTCCTCTTGTTT+TGG + chr6_2:79094358-79094377 Msa0930230:five_prime_UTR 35.0%
ACGATACAAACCAAAACAAG+AGG - chr6_2:79094371-79094390 None:intergenic 35.0%
CAAATCACACCTATTCTCAT+CGG + chr6_2:79094490-79094509 Msa0930230:five_prime_UTR 35.0%
ATTGTGCGTGCAGTAATAAT+GGG - chr6_2:79094754-79094773 None:intergenic 35.0%
TAGCTATGTTGTGCTGAATT+TGG + chr6_2:79095147-79095166 Msa0930230:intron 35.0%
TGGGATCGAAATCACAAAAA+GGG - chr6_2:79095443-79095462 None:intergenic 35.0%
TTGGGATCGAAATCACAAAA+AGG - chr6_2:79095444-79095463 None:intergenic 35.0%
AAAGGGATTTAACGAACAAC+TGG + chr6_2:79095664-79095683 Msa0930230:five_prime_UTR 35.0%
! GCACGCATACAAGAAAATTT+TGG - chr6_2:79095760-79095779 None:intergenic 35.0%
AATTGCATAAGTGAGTGTGA+GGG - chr6_2:79095784-79095803 None:intergenic 35.0%
AAATTGCATAAGTGAGTGTG+AGG - chr6_2:79095785-79095804 None:intergenic 35.0%
!! GAACAGAAGATTTTGGAAAG+AGG + chr6_2:79095822-79095841 Msa0930230:intron 35.0%
AGATATTGACGTTCTTTGTG+TGG + chr6_2:79096057-79096076 Msa0930230:five_prime_UTR 35.0%
GATATTGACGTTCTTTGTGT+GGG + chr6_2:79096058-79096077 Msa0930230:five_prime_UTR 35.0%
CAAGAATTATCACACCTTTC+TGG - chr6_2:79096098-79096117 None:intergenic 35.0%
!! AAAGTTGACTTAGGGTTTTC+AGG + chr6_2:79096127-79096146 Msa0930230:intron 35.0%
!! AGACAACAATTTTAGTGGGA+AGG - chr6_2:79096162-79096181 None:intergenic 35.0%
!! TTGTTGTCTGAATTGGCTTT+AGG + chr6_2:79096173-79096192 Msa0930230:intron 35.0%
!! TGGCTTTAGGAAGATTTCTT+TGG + chr6_2:79096186-79096205 Msa0930230:intron 35.0%
TTCCCGAAGTAAGTGATTTA+TGG + chr6_2:79096349-79096368 Msa0930230:intron 35.0%
TAGTTTCAAGCAAAATGCAG+AGG - chr6_2:79096413-79096432 None:intergenic 35.0%
!! GTTTGTTATTGGATAGGACT+TGG + chr6_2:79096485-79096504 Msa0930230:intron 35.0%
ATAGGACTTGGATTTATCAC+AGG + chr6_2:79096497-79096516 Msa0930230:intron 35.0%
GACTGATCAAATCTTGCATT+TGG + chr6_2:79096578-79096597 Msa0930230:five_prime_UTR 35.0%
! GCATTTGGTTCCAAATATTC+AGG + chr6_2:79096593-79096612 Msa0930230:five_prime_UTR 35.0%
ATTGAGATGCGTGAAGTTAT+GGG + chr6_2:79096716-79096735 Msa0930230:five_prime_UTR 35.0%
!! GTTTTCTTGGTGGTATAAAC+TGG + chr6_2:79096900-79096919 Msa0930230:CDS 35.0%
AACATATTAGGCAGTGCATT+TGG - chr6_2:79096959-79096978 None:intergenic 35.0%
AAATGCACTGCCTAATATGT+TGG + chr6_2:79096958-79096977 Msa0930230:CDS 35.0%
AATCGAGACACCAACATATT+AGG - chr6_2:79096971-79096990 None:intergenic 35.0%
!! TCTTTAGGGTATACACTCAA+TGG + chr6_2:79096990-79097009 Msa0930230:CDS 35.0%
! CTAATAGCACAAAGCATTAC+TGG - chr6_2:79097028-79097047 None:intergenic 35.0%
! CAGTAATGCTTTGTGCTATT+AGG + chr6_2:79097026-79097045 Msa0930230:CDS 35.0%
! ATCTCTTGGACTTCAAGTTT+GGG + chr6_2:79097054-79097073 Msa0930230:CDS 35.0%
TTATCCTTGGGATTTCTTCT+AGG - chr6_2:79097082-79097101 None:intergenic 35.0%
GGATAAGCAGGAGTAATTAT+TGG - chr6_2:79097118-79097137 None:intergenic 35.0%
TTGTAGCTAGAATTCATGCA+CGG - chr6_2:79097139-79097158 None:intergenic 35.0%
TTATGACAGAGGAATTTCAG+AGG + chr6_2:79097182-79097201 Msa0930230:CDS 35.0%
TATGACAGAGGAATTTCAGA+GGG + chr6_2:79097183-79097202 Msa0930230:CDS 35.0%
ATAAACAAACAGGCACATAG+TGG + chr6_2:79097741-79097760 Msa0930230:intron 35.0%
AAAGTGACAACTGTACAGAT+TGG - chr6_2:79097853-79097872 None:intergenic 35.0%
!!! CTGATATTTTTAGGCTATGG+AGG + chr6_2:79098051-79098070 Msa0930230:intron 35.0%
ATCTTAGAAATTGGAAAGGC+TGG + chr6_2:79098173-79098192 Msa0930230:CDS 35.0%
TCTTAGAAATTGGAAAGGCT+GGG + chr6_2:79098174-79098193 Msa0930230:CDS 35.0%
AATAAAACAGAAAGAGGCAG+AGG - chr6_2:79098285-79098304 None:intergenic 35.0%
! TTTTCTCAAAAAGAGTTGGG+GGG + chr6_2:79098303-79098322 Msa0930230:intron 35.0%
CTCTCAATCTAGATGTTCAA+AGG - chr6_2:79098380-79098399 None:intergenic 35.0%
CTTTGAACATCTAGATTGAG+AGG + chr6_2:79098378-79098397 Msa0930230:intron 35.0%
TAGATTGAGAGGAACACTTA+TGG + chr6_2:79098389-79098408 Msa0930230:intron 35.0%
GAGATGGATATATTCATTCC+AGG - chr6_2:79098596-79098615 None:intergenic 35.0%
AATACCACCAGGAAATACAA+AGG - chr6_2:79098645-79098664 None:intergenic 35.0%
TTGTATTTCCTGGTGGTATT+CGG + chr6_2:79098645-79098664 Msa0930230:CDS 35.0%
TCCCCTGAAAAATTCAAATC+AGG - chr6_2:79098971-79098990 None:intergenic 35.0%
GAACTTGGCAAACATCAATT+TGG + chr6_2:79099213-79099232 Msa0930230:CDS 35.0%
CACAATCAGTTAGAAAAAGC+TGG - chr6_2:79099419-79099438 None:intergenic 35.0%
ATGTGGTTAATTACGTTCAG+TGG + chr6_2:79099628-79099647 Msa0930230:intron 35.0%
GTATATTTGACCGCAAGTTA+TGG - chr6_2:79099820-79099839 None:intergenic 35.0%
! AAGTTCGCAGGCTTTATATT+AGG + chr6_2:79100052-79100071 Msa0930230:intron 35.0%
! AGTTCGCAGGCTTTATATTA+GGG + chr6_2:79100053-79100072 Msa0930230:intron 35.0%
TATGAGCTGATGCAATAAGT+TGG + chr6_2:79100110-79100129 Msa0930230:intron 35.0%
AGTTTATGTCATGATTAGGC+TGG + chr6_2:79100467-79100486 Msa0930230:intron 35.0%
TATCAACGTTCTTGCAAATC+AGG - chr6_2:79100674-79100693 None:intergenic 35.0%
AGAATAAAGACGCACCTAGA+AGG + chr6_2:79094280-79094299 Msa0930230:five_prime_UTR 40.0%
GAATAAAGACGCACCTAGAA+GGG + chr6_2:79094281-79094300 Msa0930230:five_prime_UTR 40.0%
GGGTATTTGCATTGCACTAA+AGG + chr6_2:79094306-79094325 Msa0930230:five_prime_UTR 40.0%
AGAAAACGAACGAACCTGTA+AGG - chr6_2:79094455-79094474 None:intergenic 40.0%
TCGAGGTTCAACTTCAACAA+CGG + chr6_2:79094516-79094535 Msa0930230:five_prime_UTR 40.0%
TTGTGCGTGCAGTAATAATG+GGG - chr6_2:79094753-79094772 None:intergenic 40.0%
GATTGTGCGTGCAGTAATAA+TGG - chr6_2:79094755-79094774 None:intergenic 40.0%
TTGGCGACATCATATTCAGT+TGG - chr6_2:79095054-79095073 None:intergenic 40.0%
ATTACACAAAGCCCTCAACT+TGG - chr6_2:79095511-79095530 None:intergenic 40.0%
GCTCAACCACATTTCCAATA+TGG - chr6_2:79095561-79095580 None:intergenic 40.0%
GTTCGTTAAATCCCTTTGCA+CGG - chr6_2:79095661-79095680 None:intergenic 40.0%
! ACTTTTGGATCATATCGCCT+AGG + chr6_2:79095713-79095732 Msa0930230:five_prime_UTR 40.0%
! CTTTTGGATCATATCGCCTA+GGG + chr6_2:79095714-79095733 Msa0930230:five_prime_UTR 40.0%
! TTTTGGATCATATCGCCTAG+GGG + chr6_2:79095715-79095734 Msa0930230:five_prime_UTR 40.0%
TGATGGTCAAATTTGTGGAC+CGG + chr6_2:79095924-79095943 Msa0930230:intron 40.0%
AAGAACGTCAATATCTGCTC+CGG - chr6_2:79096053-79096072 None:intergenic 40.0%
TTGAACTTGAAACCCATCAC+TGG - chr6_2:79096282-79096301 None:intergenic 40.0%
!! GTGATGGGTTTCAAGTTCAA+TGG + chr6_2:79096282-79096301 Msa0930230:five_prime_UTR 40.0%
CAAGTTCAATGGCATCTCTT+TGG + chr6_2:79096293-79096312 Msa0930230:five_prime_UTR 40.0%
CAAAATGCAGAGGTGATGAA+GGG - chr6_2:79096403-79096422 None:intergenic 40.0%
CAAACTGTTCGCAGTCTTAA+TGG + chr6_2:79096546-79096565 Msa0930230:five_prime_UTR 40.0%
! GTCAGCTTTGATATGACTTC+TGG + chr6_2:79096639-79096658 Msa0930230:intron 40.0%
CATTGAGATGCGTGAAGTTA+TGG + chr6_2:79096715-79096734 Msa0930230:five_prime_UTR 40.0%
! ATAAACTGGGCATTGCTTGT+TGG + chr6_2:79096914-79096933 Msa0930230:CDS 40.0%
! TGTTGGTGTCTCGATTCTTT+AGG + chr6_2:79096975-79096994 Msa0930230:CDS 40.0%
! GTTGGTGTCTCGATTCTTTA+GGG + chr6_2:79096976-79096995 Msa0930230:CDS 40.0%
! ATGCTTTGTGCTATTAGGGA+AGG + chr6_2:79097031-79097050 Msa0930230:CDS 40.0%
! GATCTCTTGGACTTCAAGTT+TGG + chr6_2:79097053-79097072 Msa0930230:CDS 40.0%
TACATTGCGTGTTATGACAG+AGG + chr6_2:79097171-79097190 Msa0930230:CDS 40.0%
ATGACAGAGGAATTTCAGAG+GGG + chr6_2:79097184-79097203 Msa0930230:CDS 40.0%
GTTAGTAGAGACAAATCCCT+TGG + chr6_2:79097766-79097785 Msa0930230:intron 40.0%
! AATTTGGGACTTACCTCCAA+GGG - chr6_2:79097785-79097804 None:intergenic 40.0%
! AAATTTGGGACTTACCTCCA+AGG - chr6_2:79097786-79097805 None:intergenic 40.0%
GTACAGATTGGTGTGCTAAA+TGG - chr6_2:79097841-79097860 None:intergenic 40.0%
TTAGGCTATGGAGGTTAACA+AGG + chr6_2:79098060-79098079 Msa0930230:intron 40.0%
GTTCAAAGGACAGCCAAATT+AGG - chr6_2:79098366-79098385 None:intergenic 40.0%
TCTGAAAAATCACCAGGATG+TGG - chr6_2:79098431-79098450 None:intergenic 40.0%
ATCAAATTGTCCGCCTTCTT+TGG - chr6_2:79098516-79098535 None:intergenic 40.0%
TATATTGCGGCGTTTCACAT+GGG - chr6_2:79098618-79098637 None:intergenic 40.0%
ATACAAAGGCGGGTATATTG+CGG - chr6_2:79098631-79098650 None:intergenic 40.0%
! GTTACTTTGGATGGGCATTT+AGG - chr6_2:79098671-79098690 None:intergenic 40.0%
TCAAGCAGAAAAGTCTCAAG+AGG + chr6_2:79098736-79098755 Msa0930230:CDS 40.0%
CAAGCAGAAAAGTCTCAAGA+GGG + chr6_2:79098737-79098756 Msa0930230:CDS 40.0%
TCTCAAGAGGGTAAAGAGTT+GGG + chr6_2:79098749-79098768 Msa0930230:CDS 40.0%
AGTTGGGAGCAAACAATGAT+AGG + chr6_2:79098765-79098784 Msa0930230:CDS 40.0%
GAAAGCAAGCAGAAGATAGT+CGG + chr6_2:79098792-79098811 Msa0930230:CDS 40.0%
AAAGCAAGCAGAAGATAGTC+GGG + chr6_2:79098793-79098812 Msa0930230:CDS 40.0%
!!! GTTGCTTTTCACTGATCCAT+TGG - chr6_2:79099017-79099036 None:intergenic 40.0%
TATCAGTAGCAGCAAGTAGA+GGG - chr6_2:79099051-79099070 None:intergenic 40.0%
!! CAAAGATTTTGGTGGGAACT+TGG + chr6_2:79099198-79099217 Msa0930230:CDS 40.0%
TATATACTCTAATGGGGGCT+TGG + chr6_2:79099303-79099322 Msa0930230:CDS 40.0%
CTTTGTCAAATCTGCGCATA+TGG + chr6_2:79099479-79099498 Msa0930230:CDS 40.0%
CTTTACGCCGTTTGAATATG+TGG + chr6_2:79099611-79099630 Msa0930230:intron 40.0%
GGTTAATTACGTTCAGTGGA+TGG + chr6_2:79099632-79099651 Msa0930230:intron 40.0%
ATTTATCGCATGAAGTTCGC+AGG + chr6_2:79100040-79100059 Msa0930230:intron 40.0%
AGGTTGAATTTCACCTCCTT+GGG + chr6_2:79100533-79100552 Msa0930230:intron 40.0%
! AAGCTTTATCTGCTGAAGCT+AGG + chr6_2:79100589-79100608 Msa0930230:three_prime_UTR 40.0%
! AGCTTTATCTGCTGAAGCTA+GGG + chr6_2:79100590-79100609 Msa0930230:three_prime_UTR 40.0%
GATACTGCAGATAATAAGCG+AGG + chr6_2:79100690-79100709 Msa0930230:three_prime_UTR 40.0%
TGCAAATACCCTTCCCTTCT+AGG - chr6_2:79094297-79094316 None:intergenic 45.0%
TGAAAGAAAGGAACGTGGAG+CGG - chr6_2:79094339-79094358 None:intergenic 45.0%
CCTCGAATTCCGATGAGAAT+AGG - chr6_2:79094502-79094521 None:intergenic 45.0%
CCTATTCTCATCGGAATTCG+AGG + chr6_2:79094499-79094518 Msa0930230:five_prime_UTR 45.0%
CATCTTCACTTTCACCTCGA+CGG + chr6_2:79094544-79094563 Msa0930230:five_prime_UTR 45.0%
!! AATTTGTTGATGGGGAGCAC+TGG + chr6_2:79094961-79094980 Msa0930230:five_prime_UTR 45.0%
!! ATTTGTTGATGGGGAGCACT+GGG + chr6_2:79094962-79094981 Msa0930230:five_prime_UTR 45.0%
GTTTAGTACTTGCAAGACGC+CGG + chr6_2:79095186-79095205 Msa0930230:intron 45.0%
GTCCTGATTCTCATACAAGC+CGG - chr6_2:79095208-79095227 None:intergenic 45.0%
ATCAGGACGAAGCGATTTGT+AGG + chr6_2:79095220-79095239 Msa0930230:five_prime_UTR 45.0%
TCAGGACGAAGCGATTTGTA+GGG + chr6_2:79095221-79095240 Msa0930230:five_prime_UTR 45.0%
!! ATTTGTAGGGAGGAAGTGCT+TGG + chr6_2:79095234-79095253 Msa0930230:five_prime_UTR 45.0%
ATTTCGATCCCAAGTGACAG+AGG + chr6_2:79095451-79095470 Msa0930230:intron 45.0%
TTTCGATCCCAAGTGACAGA+GGG + chr6_2:79095452-79095471 Msa0930230:intron 45.0%
! TCTCTTTCCCTCTGTCACTT+GGG - chr6_2:79095462-79095481 None:intergenic 45.0%
TTCTCTTTCCCTCTGTCACT+TGG - chr6_2:79095463-79095482 None:intergenic 45.0%
! AGAGAAGCAGACGCCTTATT+TGG + chr6_2:79095477-79095496 Msa0930230:intron 45.0%
AAAACCGTTAGCCGTGCAAA+GGG + chr6_2:79095647-79095666 Msa0930230:five_prime_UTR 45.0%
AAATCCCTTTGCACGGCTAA+CGG - chr6_2:79095654-79095673 None:intergenic 45.0%
AAAAACAGCACCATACCCCT+AGG - chr6_2:79095733-79095752 None:intergenic 45.0%
AGAACGTCAATATCTGCTCC+GGG - chr6_2:79096052-79096071 None:intergenic 45.0%
ACCTAGACATGCAACCAGAA+AGG + chr6_2:79096081-79096100 Msa0930230:five_prime_UTR 45.0%
!! ACCTTTCTGGTTGCATGTCT+AGG - chr6_2:79096085-79096104 None:intergenic 45.0%
ATCACTGGAACATGAGCATC+AGG - chr6_2:79096267-79096286 None:intergenic 45.0%
TGATGCTCATGTTCCAGTGA+TGG + chr6_2:79096266-79096285 Msa0930230:five_prime_UTR 45.0%
GATGCTCATGTTCCAGTGAT+GGG + chr6_2:79096267-79096286 Msa0930230:five_prime_UTR 45.0%
GCAAAATGCAGAGGTGATGA+AGG - chr6_2:79096404-79096423 None:intergenic 45.0%
GCAGTGCATTTGGATATAGC+TGG - chr6_2:79096949-79096968 None:intergenic 45.0%
! GCACAAAGCATTACTGGGTT+TGG - chr6_2:79097022-79097041 None:intergenic 45.0%
GCTATTAGGGAAGGATCTCT+TGG + chr6_2:79097040-79097059 Msa0930230:CDS 45.0%
GGATCCTAGAAGAAATCCCA+AGG + chr6_2:79097075-79097094 Msa0930230:CDS 45.0%
GAATTCATGCACGGATAAGC+AGG - chr6_2:79097130-79097149 None:intergenic 45.0%
GAGGGGAGATGAAATATGTG+AGG + chr6_2:79097201-79097220 Msa0930230:CDS 45.0%
!!! CTTTTTATGGGGGTACCATG+AGG + chr6_2:79097344-79097363 Msa0930230:intron 45.0%
!! TTTTTGAGCAGTAGGCCTCA+TGG - chr6_2:79097362-79097381 None:intergenic 45.0%
AGTAGAGACAAATCCCTTGG+AGG + chr6_2:79097769-79097788 Msa0930230:intron 45.0%
!! CACTCTATACTCTAGAGCCA+TGG + chr6_2:79097807-79097826 Msa0930230:intron 45.0%
TTTACCTACAAACCACCTCC+CGG + chr6_2:79097881-79097900 Msa0930230:intron 45.0%
TATCACACAGATGCACGACT+GGG - chr6_2:79097917-79097936 None:intergenic 45.0%
TTATCACACAGATGCACGAC+TGG - chr6_2:79097918-79097937 None:intergenic 45.0%
!! AAGTATTGGCCAACCTCTGA+GGG - chr6_2:79097969-79097988 None:intergenic 45.0%
!! AAAGTATTGGCCAACCTCTG+AGG - chr6_2:79097970-79097989 None:intergenic 45.0%
TGGAGGTTAACAAGGCTGAT+TGG + chr6_2:79098068-79098087 Msa0930230:CDS 45.0%
GGAGGTTAACAAGGCTGATT+GGG + chr6_2:79098069-79098088 Msa0930230:CDS 45.0%
GTATATTGCGGCGTTTCACA+TGG - chr6_2:79098619-79098638 None:intergenic 45.0%
ATACCCGCCTTTGTATTTCC+TGG + chr6_2:79098635-79098654 Msa0930230:CDS 45.0%
ACCACCAGGAAATACAAAGG+CGG - chr6_2:79098642-79098661 None:intergenic 45.0%
AATGCCCATCCAAAGTAACC+TGG + chr6_2:79098672-79098691 Msa0930230:CDS 45.0%
ATGCCCATCCAAAGTAACCT+GGG + chr6_2:79098673-79098692 Msa0930230:CDS 45.0%
! TCACCCAGGTTACTTTGGAT+GGG - chr6_2:79098679-79098698 None:intergenic 45.0%
CTTACTCACCCAGGTTACTT+TGG - chr6_2:79098684-79098703 None:intergenic 45.0%
TAAGCGACGTTCAGAGCTTA+GGG + chr6_2:79098700-79098719 Msa0930230:CDS 45.0%
! GAGACTTTTCTGCTTGACCA+TGG - chr6_2:79098733-79098752 None:intergenic 45.0%
GTCTCAAGAGGGTAAAGAGT+TGG + chr6_2:79098748-79098767 Msa0930230:CDS 45.0%
TCATGAACATCCCTGCTAGA+GGG - chr6_2:79098857-79098876 None:intergenic 45.0%
TTCATGAACATCCCTGCTAG+AGG - chr6_2:79098858-79098877 None:intergenic 45.0%
AGCAGGGATGTTCATGAAGA+TGG + chr6_2:79098860-79098879 Msa0930230:CDS 45.0%
CAAGAACTAGCAATGCTGAC+AGG - chr6_2:79098890-79098909 None:intergenic 45.0%
CTATCAGTAGCAGCAAGTAG+AGG - chr6_2:79099052-79099071 None:intergenic 45.0%
GTCATCCAGAAGATTGTGTG+TGG + chr6_2:79099100-79099119 Msa0930230:CDS 45.0%
ATGGACCACACACAATCTTC+TGG - chr6_2:79099108-79099127 None:intergenic 45.0%
AAGGCTTGATGTACCTCACA+TGG - chr6_2:79099127-79099146 None:intergenic 45.0%
AGATCATCTTCAAGCTCCTC+AGG - chr6_2:79099160-79099179 None:intergenic 45.0%
TTTCTGTCACACAGTGCCTT+TGG + chr6_2:79100187-79100206 Msa0930230:intron 45.0%
TTCTGTCACACAGTGCCTTT+GGG + chr6_2:79100188-79100207 Msa0930230:intron 45.0%
CTTACAGCTCCATTGTTCAG+TGG + chr6_2:79100327-79100346 Msa0930230:CDS 45.0%
GCTGGATTTCCACTGAACAA+TGG - chr6_2:79100339-79100358 None:intergenic 45.0%
! CAGGTTGAATTTCACCTCCT+TGG + chr6_2:79100532-79100551 Msa0930230:intron 45.0%
GGTTGAATTTCACCTCCTTG+GGG + chr6_2:79100534-79100553 Msa0930230:intron 45.0%
! TTTGTCAGCAGTTTTCCCCA+AGG - chr6_2:79100552-79100571 None:intergenic 45.0%
GCTTTATCTGCTGAAGCTAG+GGG + chr6_2:79100591-79100610 Msa0930230:three_prime_UTR 45.0%
CTTTATCTGCTGAAGCTAGG+GGG + chr6_2:79100592-79100611 Msa0930230:three_prime_UTR 45.0%
TTTATCTGCTGAAGCTAGGG+GGG + chr6_2:79100593-79100612 Msa0930230:three_prime_UTR 45.0%
!!! ATTTATTTTAATACTTTTTA+TGG + chr6_2:79097331-79097350 Msa0930230:intron 5.0%
!!! TTTATTTTAATACTTTTTAT+GGG + chr6_2:79097332-79097351 Msa0930230:intron 5.0%
AAAGACGCACCTAGAAGGGA+AGG + chr6_2:79094285-79094304 Msa0930230:five_prime_UTR 50.0%
AAGACGCACCTAGAAGGGAA+GGG + chr6_2:79094286-79094305 Msa0930230:five_prime_UTR 50.0%
GGGTTAAGCAACCGCGATAT+CGG + chr6_2:79094982-79095001 Msa0930230:five_prime_UTR 50.0%
GGTTAAGCAACCGCGATATC+GGG + chr6_2:79094983-79095002 Msa0930230:five_prime_UTR 50.0%
GCTCGGTTATCCCTAACCTT+TGG - chr6_2:79095014-79095033 None:intergenic 50.0%
GTTGGTCCGCTCAATGAGAT+CGG - chr6_2:79095036-79095055 None:intergenic 50.0%
CAAAACCGTTAGCCGTGCAA+AGG + chr6_2:79095646-79095665 Msa0930230:five_prime_UTR 50.0%
GATCATATCGCCTAGGGGTA+TGG + chr6_2:79095720-79095739 Msa0930230:intron 50.0%
! ATTTTGTAGGTGCATGGCCC+CGG + chr6_2:79096031-79096050 Msa0930230:intron 50.0%
GAACGTCAATATCTGCTCCG+GGG - chr6_2:79096051-79096070 None:intergenic 50.0%
GAACATGAGCATCAGGCACT+GGG - chr6_2:79096260-79096279 None:intergenic 50.0%
AATGCAGAGGTGATGAAGGG+AGG - chr6_2:79096400-79096419 None:intergenic 50.0%
! AAGTTATGGGCTAAGCGTCG+TGG + chr6_2:79096729-79096748 Msa0930230:five_prime_UTR 50.0%
AAGGAAGCTCGAGCTGTAGA+TGG + chr6_2:79096771-79096790 Msa0930230:five_prime_UTR 50.0%
CTTCATGATATGTCACGGGC+AGG + chr6_2:79096871-79096890 Msa0930230:exon 50.0%
! CAGGTTGCAGGTTTTCTTGG+TGG + chr6_2:79096890-79096909 Msa0930230:CDS 50.0%
GGGTATACACTCAATGGCGT+TGG + chr6_2:79096996-79097015 Msa0930230:CDS 50.0%
GCTAAATGGAGCTTCGACCA+TGG - chr6_2:79097827-79097846 None:intergenic 50.0%
ATCACACAGATGCACGACTG+GGG - chr6_2:79097916-79097935 None:intergenic 50.0%
CTTGCGCCAGTTGACATTGA+AGG + chr6_2:79098207-79098226 Msa0930230:CDS 50.0%
CTTCAGTGTCATCCACATCC+TGG + chr6_2:79098416-79098435 Msa0930230:CDS 50.0%
ATGGGTCTGCAACGTAAGCA+AGG + chr6_2:79098482-79098501 Msa0930230:CDS 50.0%
CAAGGAGTTCCTGCCAAAGA+AGG + chr6_2:79098500-79098519 Msa0930230:CDS 50.0%
AATTGTCCGCCTTCTTTGGC+AGG - chr6_2:79098512-79098531 None:intergenic 50.0%
CTGTCAATGCGTACACGCAA+TGG + chr6_2:79098567-79098586 Msa0930230:CDS 50.0%
CCACCAGGAAATACAAAGGC+GGG - chr6_2:79098641-79098660 None:intergenic 50.0%
CATTTAGGCCGAATACCACC+AGG - chr6_2:79098656-79098675 None:intergenic 50.0%
! CTCACCCAGGTTACTTTGGA+TGG - chr6_2:79098680-79098699 None:intergenic 50.0%
GTAAGCGACGTTCAGAGCTT+AGG + chr6_2:79098699-79098718 Msa0930230:CDS 50.0%
CGTTCAGAGCTTAGGGTTTC+CGG + chr6_2:79098707-79098726 Msa0930230:CDS 50.0%
! CTTTTCTGCTTGACCATGGC+CGG - chr6_2:79098729-79098748 None:intergenic 50.0%
AGGCAGAGAGGAAAAGGACT+GGG - chr6_2:79098834-79098853 None:intergenic 50.0%
!!! TTTTCAGGGGAGTGTCCTTC+TGG + chr6_2:79098980-79098999 Msa0930230:CDS 50.0%
!! TTTCAGGGGAGTGTCCTTCT+GGG + chr6_2:79098981-79099000 Msa0930230:CDS 50.0%
TTGGTCTCTCTATCCCCAGA+AGG - chr6_2:79098998-79099017 None:intergenic 50.0%
TCTGGGGATAGAGAGACCAA+TGG + chr6_2:79098998-79099017 Msa0930230:CDS 50.0%
GATTGTGTGTGGTCCATGTG+AGG + chr6_2:79099111-79099130 Msa0930230:CDS 50.0%
AGCCTTTCCTGAAGAACCTG+AGG + chr6_2:79099141-79099160 Msa0930230:CDS 50.0%
CTCCTCAGGTTCTTCAGGAA+AGG - chr6_2:79099146-79099165 None:intergenic 50.0%
TCAAGCTCCTCAGGTTCTTC+AGG - chr6_2:79099151-79099170 None:intergenic 50.0%
GGACTCTACAAAGTCTGCAG+TGG + chr6_2:79099234-79099253 Msa0930230:CDS 50.0%
ATACTCTAATGGGGGCTTGG+AGG + chr6_2:79099306-79099325 Msa0930230:CDS 50.0%
TCTGTCACACAGTGCCTTTG+GGG + chr6_2:79100189-79100208 Msa0930230:intron 50.0%
AAGGGCTTAATTGCCCCCAA+AGG - chr6_2:79100206-79100225 None:intergenic 50.0%
AATGGAGCTGTAAGCTCAGC+AGG - chr6_2:79100321-79100340 None:intergenic 50.0%
CTAATAAGAGGCTTCCGCTG+TGG - chr6_2:79100369-79100388 None:intergenic 50.0%
CACAGCGGAAGCCTCTTATT+AGG + chr6_2:79100367-79100386 Msa0930230:CDS 50.0%
AAGAAAGGAACGTGGAGCGG+AGG - chr6_2:79094336-79094355 None:intergenic 55.0%
ACCGAGCCGATCTCATTGAG+CGG + chr6_2:79095027-79095046 Msa0930230:five_prime_UTR 55.0%
TCCGCTCAATGAGATCGGCT+CGG - chr6_2:79095031-79095050 None:intergenic 55.0%
!! CGCCGGCTTGTATGAGAATC+AGG + chr6_2:79095203-79095222 Msa0930230:five_prime_UTR 55.0%
GGACGAAGCGATTTGTAGGG+AGG + chr6_2:79095224-79095243 Msa0930230:five_prime_UTR 55.0%
! GGGTGCAACTCTGTCACTTC+TGG - chr6_2:79096240-79096259 None:intergenic 55.0%
GGAACATGAGCATCAGGCAC+TGG - chr6_2:79096261-79096280 None:intergenic 55.0%
ATATGTCACGGGCAGGTTGC+AGG + chr6_2:79096878-79096897 Msa0930230:CDS 55.0%
! GGGCAGGTTGCAGGTTTTCT+TGG + chr6_2:79096887-79096906 Msa0930230:CDS 55.0%
! TTTTAGCCGCGTTCCCTCAG+AGG + chr6_2:79097953-79097972 Msa0930230:intron 55.0%
GGAGTTCCTGCCAAAGAAGG+CGG + chr6_2:79098503-79098522 Msa0930230:CDS 55.0%
GCGTACACGCAATGGAAACC+TGG + chr6_2:79098575-79098594 Msa0930230:CDS 55.0%
CCCGCCTTTGTATTTCCTGG+TGG + chr6_2:79098638-79098657 Msa0930230:CDS 55.0%
TGAACGTCGCTTACTCACCC+AGG - chr6_2:79098693-79098712 None:intergenic 55.0%
GAGGCAGAGAGGAAAAGGAC+TGG - chr6_2:79098835-79098854 None:intergenic 55.0%
AGAGGGAGGCAGAGAGGAAA+AGG - chr6_2:79098840-79098859 None:intergenic 55.0%
TGAACATCCCTGCTAGAGGG+AGG - chr6_2:79098854-79098873 None:intergenic 55.0%
!! TTCAGGGGAGTGTCCTTCTG+GGG + chr6_2:79098982-79099001 Msa0930230:CDS 55.0%
CTGTCACACAGTGCCTTTGG+GGG + chr6_2:79100190-79100209 Msa0930230:intron 55.0%
! GTCAGCAGTTTTCCCCAAGG+AGG - chr6_2:79100549-79100568 None:intergenic 55.0%
TGCTGCGATTAGAGCCGTCG+AGG - chr6_2:79094561-79094580 None:intergenic 60.0%
TTTGGCGCTGCCCGATATCG+CGG - chr6_2:79094996-79095015 None:intergenic 60.0%
ATCGGGCAGCGCCAAAGGTT+AGG + chr6_2:79095000-79095019 Msa0930230:five_prime_UTR 60.0%
TCGGGCAGCGCCAAAGGTTA+GGG + chr6_2:79095001-79095020 Msa0930230:five_prime_UTR 60.0%
CTTCTCGAGCTCACGCGTCT+TGG - chr6_2:79095073-79095092 None:intergenic 60.0%
CAAGACGCGTGAGCTCGAGA+AGG + chr6_2:79095071-79095090 Msa0930230:five_prime_UTR 60.0%
!! GTAGGGAGGAAGTGCTTGGC+AGG + chr6_2:79095238-79095257 Msa0930230:five_prime_UTR 60.0%
AGTGCTTGGCAGGCTAGACC+AGG + chr6_2:79095248-79095267 Msa0930230:five_prime_UTR 60.0%
CTTGGCAGGCTAGACCAGGT+TGG + chr6_2:79095252-79095271 Msa0930230:intron 60.0%
! AGGACCGGGAGGTGGTTTGT+AGG - chr6_2:79097888-79097907 None:intergenic 60.0%
ACGACTGGGGCAACAAGGAC+CGG - chr6_2:79097903-79097922 None:intergenic 60.0%
GATGCACGACTGGGGCAACA+AGG - chr6_2:79097908-79097927 None:intergenic 60.0%
GCGGCGTTTCACATGGGAGA+TGG - chr6_2:79098612-79098631 None:intergenic 60.0%
GAGCTTAGGGTTTCCGGCCA+TGG + chr6_2:79098713-79098732 Msa0930230:CDS 60.0%
CTCTCTGCCTCCCTCTAGCA+GGG + chr6_2:79098844-79098863 Msa0930230:CDS 60.0%
ATCCAGCACCAGTGCCACAG+CGG + chr6_2:79100352-79100371 Msa0930230:CDS 60.0%
GCGATATCGGGCAGCGCCAA+AGG + chr6_2:79094995-79095014 Msa0930230:five_prime_UTR 65.0%
CGACTGGGGCAACAAGGACC+GGG - chr6_2:79097902-79097921 None:intergenic 65.0%
AGCCGCGTTCCCTCAGAGGT+TGG + chr6_2:79097957-79097976 Msa0930230:intron 65.0%
! GGCCAACCTCTGAGGGAACG+CGG - chr6_2:79097962-79097981 None:intergenic 65.0%
CCTGCTAGAGGGAGGCAGAG+AGG - chr6_2:79098846-79098865 None:intergenic 65.0%
CCTCTCTGCCTCCCTCTAGC+AGG + chr6_2:79098843-79098862 Msa0930230:CDS 65.0%
TGGGGGCTTGGAGGAGCTTG+AGG + chr6_2:79099315-79099334 Msa0930230:CDS 65.0%
!! TTCCGCTGTGGCACTGGTGC+TGG - chr6_2:79100357-79100376 None:intergenic 65.0%
AGAGGCTTCCGCTGTGGCAC+TGG - chr6_2:79100363-79100382 None:intergenic 65.0%
GGGCAACAAGGACCGGGAGG+TGG - chr6_2:79097896-79097915 None:intergenic 70.0%
CTGGGGCAACAAGGACCGGG+AGG - chr6_2:79097899-79097918 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79094279 79100804 79094279 ID=Msa0930230;Name=Msa0930230
chr6_2 mRNA 79094279 79100804 79094279 ID=Msa0930230-mRNA-1;Parent=Msa0930230;Name=Msa0930230-mRNA-1;_AED=0.17;_eAED=0.17;_QI=1432|0.84|0.85|1|0.76|0.57|14|204|581
chr6_2 exon 79094279 79094379 79094279 ID=Msa0930230-mRNA-1:exon:13515;Parent=Msa0930230-mRNA-1
chr6_2 exon 79094460 79095092 79094460 ID=Msa0930230-mRNA-1:exon:13516;Parent=Msa0930230-mRNA-1
chr6_2 exon 79095192 79095269 79095192 ID=Msa0930230-mRNA-1:exon:13517;Parent=Msa0930230-mRNA-1
chr6_2 exon 79095629 79095736 79095629 ID=Msa0930230-mRNA-1:exon:13518;Parent=Msa0930230-mRNA-1
chr6_2 exon 79096040 79096102 79096040 ID=Msa0930230-mRNA-1:exon:13519;Parent=Msa0930230-mRNA-1
chr6_2 exon 79096195 79096356 79096195 ID=Msa0930230-mRNA-1:exon:13520;Parent=Msa0930230-mRNA-1
chr6_2 exon 79096501 79096614 79096501 ID=Msa0930230-mRNA-1:exon:13521;Parent=Msa0930230-mRNA-1
chr6_2 exon 79096702 79097222 79096702 ID=Msa0930230-mRNA-1:exon:13522;Parent=Msa0930230-mRNA-1
chr6_2 exon 79098064 79098228 79098064 ID=Msa0930230-mRNA-1:exon:13523;Parent=Msa0930230-mRNA-1
chr6_2 exon 79098392 79099336 79098392 ID=Msa0930230-mRNA-1:exon:13524;Parent=Msa0930230-mRNA-1
chr6_2 exon 79099450 79099503 79099450 ID=Msa0930230-mRNA-1:exon:13525;Parent=Msa0930230-mRNA-1
chr6_2 exon 79100201 79100388 79100201 ID=Msa0930230-mRNA-1:exon:13526;Parent=Msa0930230-mRNA-1
chr6_2 exon 79100535 79100646 79100535 ID=Msa0930230-mRNA-1:exon:13527;Parent=Msa0930230-mRNA-1
chr6_2 exon 79100667 79100804 79100667 ID=Msa0930230-mRNA-1:exon:13528;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79094279 79094379 79094279 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79094460 79095092 79094460 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79095192 79095269 79095192 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79095629 79095736 79095629 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79096040 79096102 79096040 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79096195 79096356 79096195 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79096501 79096614 79096501 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 five_prime_UTR 79096702 79096874 79096702 ID=Msa0930230-mRNA-1:five_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 CDS 79096875 79097222 79096875 ID=Msa0930230-mRNA-1:cds;Parent=Msa0930230-mRNA-1
chr6_2 CDS 79098064 79098228 79098064 ID=Msa0930230-mRNA-1:cds;Parent=Msa0930230-mRNA-1
chr6_2 CDS 79098392 79099336 79098392 ID=Msa0930230-mRNA-1:cds;Parent=Msa0930230-mRNA-1
chr6_2 CDS 79099450 79099503 79099450 ID=Msa0930230-mRNA-1:cds;Parent=Msa0930230-mRNA-1
chr6_2 CDS 79100201 79100388 79100201 ID=Msa0930230-mRNA-1:cds;Parent=Msa0930230-mRNA-1
chr6_2 CDS 79100535 79100580 79100535 ID=Msa0930230-mRNA-1:cds;Parent=Msa0930230-mRNA-1
chr6_2 three_prime_UTR 79100581 79100646 79100581 ID=Msa0930230-mRNA-1:three_prime_utr;Parent=Msa0930230-mRNA-1
chr6_2 three_prime_UTR 79100667 79100804 79100667 ID=Msa0930230-mRNA-1:three_prime_utr;Parent=Msa0930230-mRNA-1
Gene Sequence

>Msa0930230

ATGATATGTCACGGGCAGGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGGTCGAATATGCCAGCTATATCCAAATGCACTGCCTAATATGTTGGTGTCTCGATTCTTTAGGGTATACACTCAATGGCGTTGGCCAAACCCAGTAATGCTTTGTGCTATTAGGGAAGGATCTCTTGGACTTCAAGTTTGGGATCCTAGAAGAAATCCCAAGGATAAATACCATCTAATGCCAATAATTACTCCTGCTTATCCGTGCATGAATTCTAGCTACAATGTGTCATTAAGTACATTGCGTGTTATGACAGAGGAATTTCAGAGGGGAGATGAAATATGTGAGGCTATGGAGGTTAACAAGGCTGATTGGGATACTCTTTTTGAGCCCTATCCGTTTTTTGAATCTTATAAGAATTATTTGCGGATAGACATTTCAGCAGAGAATGTTGATGATCTTAGAAATTGGAAAGGCTGGGTTAAGTCTCGCTTGCGCCAGTTGACATTGAAGATTGAGAGGAACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGTGATTTTTCAGAAAAATCTAGACCTTTACACTGTTCTTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTGCCAAAGAAGGCGGACAATTTGATATGAGATTAACTGTTGAAGAATTTAAGCATTCTGTCAATGCGTACACGCAATGGAAACCTGGAATGAATATATCCATCTCCCATGTGAAACGCCGCAATATACCCGCCTTTGTATTTCCTGGTGGTATTCGGCCTAAATGCCCATCCAAAGTAACCTGGGTGAGTAAGCGACGTTCAGAGCTTAGGGTTTCCGGCCATGGTCAAGCAGAAAAGTCTCAAGAGGGTAAAGAGTTGGGAGCAAACAATGATAGGAAGAGAAAGCAAGCAGAAGATAGTCGGGATGACTTGAGAAACTCCCAGTCCTTTTCCTCTCTGCCTCCCTCTAGCAGGGATGTTCATGAAGATGGAAATCCTGTCAGCATTGCTAGTTCTTGTTCTGTGAAATGTGATGACACAGAACTCAACTGCATGAGTGAACAAAAGAGCGAGAAACCTGATTTGAATTTTTCAGGGGAGTGTCCTTCTGGGGATAGAGAGACCAATGGATCAGTGAAAAGCAACTCACAAATTATCCCTCTACTTGCTGCTACTGATAGATCTAATTTTGAAGAAGCTGAAAAGGTCGTCATCCAGAAGATTGTGTGTGGTCCATGTGAGGTACATCAAGCCTTTCCTGAAGAACCTGAGGAGCTTGAAGATGATCTTGAGTATAGAAATAAAGTCAAAGATTTTGGTGGGAACTTGGCAAACATCAATTTGGACTCTACAAAGTCTGCAGTGGCAGCAGAACCTGTTTTTTCTCAAAAGGAAAATAGTAGTTCAACTCATATATACTCTAATGGGGGCTTGGAGGAGCTTGAGTCTGAACTTTCTGCTGAAGTTGCTCACAACTTTGTCAAATCTGCGCATATGGATTGCCTTTGGGGGCAATTAAGCCCTTATTTTTATTTCAACCATGGTATATCATTAAGAAATCAAAGTGGTTCTGACTTTTTTCTATCCCTTCTTCTGTTGTTTACACTTTTTGTAAAGCCTGCTGAGCTTACAGCTCCATTGTTCAGTGGAAATCCAGCACCAGTGCCACAGCGGAAGCCTCTTATTAGGTTGAATTTCACCTCCTTGGGGAAAACTGCTGACAAAAGTTCTTAG
Protein sequence

>Msa0930230

MICHGQVAGFLGGINWALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIREGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSLSTLRVMTEEFQRGDEICEAMEVNKADWDTLFEPYPFFESYKNYLRIDISAENVDDLRNWKGWVKSRLRQLTLKIERNTYGMLQCHPHPGDFSEKSRPLHCSYFMGLQRKQGVPAKEGGQFDMRLTVEEFKHSVNAYTQWKPGMNISISHVKRRNIPAFVFPGGIRPKCPSKVTWVSKRRSELRVSGHGQAEKSQEGKELGANNDRKRKQAEDSRDDLRNSQSFSSLPPSSRDVHEDGNPVSIASSCSVKCDDTELNCMSEQKSEKPDLNFSGECPSGDRETNGSVKSNSQIIPLLAATDRSNFEEAEKVVIQKIVCGPCEVHQAFPEEPEELEDDLEYRNKVKDFGGNLANINLDSTKSAVAAEPVFSQKENSSSTHIYSNGGLEELESELSAEVAHNFVKSAHMDCLWGQLSPYFYFNHGISLRNQSGSDFFLSLLLLFTLFVKPAELTAPLFSGNPAPVPQRKPLIRLNFTSLGKTADKSS*