AlfalfaGEDB | Msa0576200

M. sativa cultivar zhongmu-4 / Msa0576200

KEGG: K14376
GO: GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0022414 GO:0031123 GO:0031124 GO:0031347 GO:0031348 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045824 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048449 GO:0048451 GO:0048465 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0070013 GO:0070566 GO:0071704 GO:0080134 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1905392 GO:1905393
PFAM: PF04928.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576200	XP_024629522.1	89.255	819	23	4	1	819	1	754	0.0	1487

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576200	sp\|Q9LMT2\|PAPS1_ARATH	56.654	819	225	16	15	817	9	713	0.0	854

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576200	G7LCF5	89.255	819	23	4	1	819	1	754	0.0	1487

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0331920	Msa0576200	0.810161	1.322789e-50	-8.615850e-47
Msa0576200	Msa0607540	0.826309	2.911696e-54	-8.615850e-47
Msa0576200	Msa0776030	0.810380	1.186250e-50	-8.615850e-47
Msa0576200	Msa0876850	-0.811750	5.987960e-51	-8.615850e-47
Msa0576200	Msa0886330	-0.805178	1.512969e-49	-8.615850e-47
Msa0576200	Msa0927290	0.818058	2.389233e-52	-8.615850e-47
Msa0576200	Msa0930230	0.907956	2.889635e-81	-8.615850e-47
Msa0576200	Msa1241130	-0.803580	3.257297e-49	-8.615850e-47
Msa0576200	Msa1261250	0.801695	7.976208e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0576200	MtrunA17_Chr8g0392531	89.255	819	23	4	1	819	1	754	1487
Msa0576200	MtrunA17_Chr6g0483461	66.910	822	199	8	1	819	1	752	1099
Msa0576200	MtrunA17_Chr8g0340751	56.552	580	197	5	15	592	24	550	688
Msa0576200	MtrunA17_Chr3g0140561	59.404	537	170	4	19	553	26	516	686

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0576200	AT1G17980.1	56.654	819	225	16	15	817	9	713	854
Msa0576200	AT4G32850.6	60.878	524	158	3	18	540	22	499	684
Msa0576200	AT4G32850.9	60.878	524	158	3	18	540	22	499	684
Msa0576200	AT4G32850.2	60.878	524	158	3	18	540	22	499	684
Msa0576200	AT4G32850.5	60.878	524	158	3	18	540	22	499	684
Msa0576200	AT4G32850.3	60.878	524	158	3	18	540	22	499	683
Msa0576200	AT4G32850.1	60.878	524	158	3	18	540	22	499	683
Msa0576200	AT4G32850.10	60.878	524	158	3	18	540	22	499	683
Msa0576200	AT4G32850.8	60.878	524	158	3	18	540	22	499	682
Msa0576200	AT4G32850.13	60.878	524	158	3	18	540	22	499	682

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Find 242 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGTTAGCCGTGCAAA+GGG	0.548467	4_1:+80268914	Msa0576200:CDS
AAACTGAAAGGAACGTGGAG+CGG	0.654157	4_1:-80267594	None:intergenic
AAAGCAAGCAGAAGATAGTC+GGG	0.493024	4_1:+80272060	Msa0576200:CDS
AAAGGGATTTAACGAACAAC+TGG	0.491052	4_1:+80268931	Msa0576200:CDS
AAAGGGTATTTGCATTGCAT+TGG	0.442296	4_1:+80267565	Msa0576200:five_prime_UTR
AAAGTATTGGCCAACCTCTG+AGG	0.602813	4_1:-80271234	None:intergenic
AAAGTGTAGTAATTTGTTGA+TGG	0.390151	4_1:+80268218	Msa0576200:exon
AAATATATATATTCTTAGAA+TGG	0.509644	4_1:-80268153	None:intergenic
AAATCCCTTTGCACGGCTAA+CGG	0.475309	4_1:-80268918	None:intergenic
AAATGCACTGCCTAATATGT+TGG	0.610636	4_1:+80270225	Msa0576200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGATTGAAATGAAATGTG+TGG	-	chr4_1:80267665-80267684	None:intergenic	30.0%
AATCAGCATGAAATGATGAA+TGG	-	chr4_1:80267853-80267872	None:intergenic	30.0%
GAGAATAATCAATTCGCTAT+AGG	-	chr4_1:80268377-80268396	None:intergenic	30.0%
TCAACAAAATAAATCCAACC+TGG	-	chr4_1:80268536-80268555	None:intergenic	30.0%
GATCATTTACTTCATCATCT+AGG	+	chr4_1:80268658-80268677	Msa0576200:intron	30.0%
TTGGAAATATTTCCAAGTTG+AGG	+	chr4_1:80268763-80268782	Msa0576200:intron	30.0%
CATTTCACGTTATACCATAT+TGG	+	chr4_1:80268811-80268830	Msa0576200:intron	30.0%
GTTATACCATATTGGAAAAG+TGG	+	chr4_1:80268819-80268838	Msa0576200:intron	30.0%
CCAAAATATATGAGTTCATG+AGG	-	chr4_1:80268852-80268871	None:intergenic	30.0%
TCTTTCCATATCAAATGTGA+TGG	+	chr4_1:80269174-80269193	Msa0576200:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	80267544	80274086	80267544	ID=Msa0576200;Name=Msa0576200
chr4_1	mRNA	80267544	80274086	80267544	ID=Msa0576200-mRNA-1;Parent=Msa0576200;Name=Msa0576200-mRNA-1;_AED=0.19;_eAED=0.19;_QI=617\|0.64\|0.8\|1\|0.92\|0.86\|15\|235\|819
chr4_1	exon	80267544	80267647	80267544	ID=Msa0576200-mRNA-1:exon:28641;Parent=Msa0576200-mRNA-1
chr4_1	exon	80267724	80268359	80267724	ID=Msa0576200-mRNA-1:exon:28642;Parent=Msa0576200-mRNA-1
chr4_1	exon	80268459	80268536	80268459	ID=Msa0576200-mRNA-1:exon:28643;Parent=Msa0576200-mRNA-1
chr4_1	exon	80268896	80269003	80268896	ID=Msa0576200-mRNA-1:exon:28644;Parent=Msa0576200-mRNA-1
chr4_1	exon	80269307	80269369	80269307	ID=Msa0576200-mRNA-1:exon:28645;Parent=Msa0576200-mRNA-1
chr4_1	exon	80269462	80269623	80269462	ID=Msa0576200-mRNA-1:exon:28646;Parent=Msa0576200-mRNA-1
chr4_1	exon	80269768	80269881	80269768	ID=Msa0576200-mRNA-1:exon:28647;Parent=Msa0576200-mRNA-1
chr4_1	exon	80269969	80270070	80269969	ID=Msa0576200-mRNA-1:exon:28648;Parent=Msa0576200-mRNA-1
chr4_1	exon	80270160	80270489	80270160	ID=Msa0576200-mRNA-1:exon:28649;Parent=Msa0576200-mRNA-1
chr4_1	exon	80271143	80271241	80271143	ID=Msa0576200-mRNA-1:exon:28650;Parent=Msa0576200-mRNA-1
chr4_1	exon	80271331	80271495	80271331	ID=Msa0576200-mRNA-1:exon:28651;Parent=Msa0576200-mRNA-1
chr4_1	exon	80271659	80272603	80271659	ID=Msa0576200-mRNA-1:exon:28652;Parent=Msa0576200-mRNA-1
chr4_1	exon	80272717	80272770	80272717	ID=Msa0576200-mRNA-1:exon:28653;Parent=Msa0576200-mRNA-1
chr4_1	exon	80273589	80273659	80273589	ID=Msa0576200-mRNA-1:exon:28654;Parent=Msa0576200-mRNA-1
chr4_1	exon	80273806	80274086	80273806	ID=Msa0576200-mRNA-1:exon:28655;Parent=Msa0576200-mRNA-1
chr4_1	five_prime_UTR	80267544	80267647	80267544	ID=Msa0576200-mRNA-1:five_prime_utr;Parent=Msa0576200-mRNA-1
chr4_1	five_prime_UTR	80267724	80268236	80267724	ID=Msa0576200-mRNA-1:five_prime_utr;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80268237	80268359	80268237	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80268459	80268536	80268459	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80268896	80269003	80268896	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80269307	80269369	80269307	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80269462	80269623	80269462	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80269768	80269881	80269768	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80269969	80270070	80269969	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80270160	80270489	80270160	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80271143	80271241	80271143	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80271331	80271495	80271331	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80271659	80272603	80271659	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80272717	80272770	80272717	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80273589	80273659	80273589	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	CDS	80273806	80273851	80273806	ID=Msa0576200-mRNA-1:cds;Parent=Msa0576200-mRNA-1
chr4_1	three_prime_UTR	80273852	80274086	80273852	ID=Msa0576200-mRNA-1:three_prime_utr;Parent=Msa0576200-mRNA-1

Gene Sequence

>Msa0576200

ATGGGGAGCACTGGGTTAAGCAACCGCGATATCGGGCAGCGCCAAAGGTTAGGGATAACCGAGCCGATCTCATTGAGCGGACCAACTGAATATGATGTCGCCAAGACGCGTGAGCTCGAGAAGTACTTGCAAGACGCCGGCTTGTATGAGAATCAGGATGAAGCGATTTGTAGGGAGGAAGTGCTTGGCAGGCTAGACCAGGTTGTGAAGATTTGGGTCAAAACCGTTAGCCGTGCAAAGGGATTTAACGAACAACTGGTCAAAGAAGCAAATGCCATGATTTTTACTTTTGGATCATATCGCCTAGGGGTGCATGGCCCCGGAGCAGATATTGACGTTCTTTGTGTGGGACCTAGACATGCAACCAGAAAGGAAGATTTCTTTGGTGAGCTGCATAAAATGCTATCTGAAATGCCAGAAGTGACAGAGTTGCACCCAGTGCCTGATGCTCATGTTCCAGTGATGGGTTTCAAGTTCAATGGCATCTCTTTGGATCTCCTTTATGCACAATTATCTTTGTGGGTTATTCCCGAAGACTTGGATTTATCACAGGAAGCAATATTACAAAATACAGACGAACAAACTGTTCGCAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTGCATTTGGTTCCAAATATTCAGAATTTTCGTACGACATTGAGATGCGTGAAGTTATGGGCTAAGCGTCGTGGTGTTTATTCAAATGTATGCAAGGAAGCTCGAGCTGTAGATGGCTTATCTGCTGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGGTCGAATATGCCAGCTATATCCAAATGCACTGCCTAATATGTTGGTGTCTCGATTCTTTAGGGTATACACTCAATGGCGTTGGCCAAACCCAGTAATGCTTTGTGCTATTAGGGAAGGATCTCTTGGACTTCAAGTTTGGGATCCTAGAAGAAATCCCAAGGATAAATACCATCTAATGCCAATAATTACTCCTGCTTATCCGTGCATGAATTCTAGCTACAATGTGTCATTAAGTACATTGCGTGTTATGACAGAGGAATTTCAGAGGGGAGATGAAATATGTGAGCATACTTTACCTACAAACCACCTCCCGGTCCTTGTTGCCCCAGTCGTGCATCTGTGTGATAATAAGTCTAGTAGCATTTTTAGCCGCGTTCCCTCAGAGGCTATGGAGGTTAACAAGGCTGATTGGGATACTCTTTTTGAGCCCTATCCGTTTTTTGAATCTTATAAGAATTATTTGCGGATAGACATTTCAGCAGAGAATGTTGATGATCTTAGAAATTGGAAAGGCTGGGTTAAGTCTCGCTTGCGCCAGTTGACATTGAAGATTGAGAGGAACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGTGATTTTTCAGAAAAATCTAGACCTTTACACTGTTCTTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTGCCAAAGAAGGCGGACAATTTGATATGAGATTAACTGTTGAAGAATTTAAGCATTCTGTCAATGCGTACACGCAATGGAAACCTGGAATGAATATATCCATCTCCCATGTGAAATGCCGCAATATACCCGCCTTTGTATTTCCCGGTGGTATTCGGCCTAAATGCCCATCCAAAGTAACCTGGGTGAGTAAGCGACGTTCAGAGCTTAGGGTTTCCGGCCATGGTCAAGCAGAAAAGTCTCAAGAGGGTAAAGAGTTGGGAGCAAACAATGATAGGAAGAGAAAGCAAGCAGAAGATAGTCGGGATGACTTGAGAAACTCCCAGTCCTTTTCCTCTCTGCCTCCCTCTAGCAGGGATGTTCATGAAGATGGAAATCCTGTCAGCATTGCTAGTTCTTGTTCTGTGAAATGTGATGACACAGAACTCAACTGCATGAGTGAACAAAAGAGCGAGAAACCTGATTTGAATTTTTCAGGGGAGTGTCCTTCTGGGGATAGAGAGACCAATGGATCAGTGAAAAGCAACTCACAAATTATCCCTCTACTTGCTGCTACTGATAGATCTAATTTTGAAGAAGCTGAAAAGGTCGTCATCCAGAAGATTGTGTGTGGTCCATGTGAGGTACATCAAGCCTTTCCTGAAGAACCTGAGGAGCTTGAAGATGATCTTGAGTATAGAAATAAAGTCAAAGATTTTGGTGGGAACTTGGCAAACATCAATTTGGACTCTACAAAGTCTGCAGTGGCAGCAGAACCTGTTTTTTCTCAAAAGGAAAATAGTAGTTCAACTCATATATACTCTAATGGGGGCTTGGAGGAGCTTGAGTCTGAACTTTCTGCTGAAGTTGCTCACAACTTTGTCAAATCTGCGCATATGGATCCTGCTGAGCTTACAGCTCCATTGTTCAGTGGAAATCCAGCACCAGTGCCACAGCGGAAGCCTCTTATTAGGTTGAATTTCACCTCCTTGGGGAAAACTGCTGACAAAAGTTCTTAG

Protein sequence

>Msa0576200

MGSTGLSNRDIGQRQRLGITEPISLSGPTEYDVAKTRELEKYLQDAGLYENQDEAICREEVLGRLDQVVKIWVKTVSRAKGFNEQLVKEANAMIFTFGSYRLGVHGPGADIDVLCVGPRHATRKEDFFGELHKMLSEMPEVTELHPVPDAHVPVMGFKFNGISLDLLYAQLSLWVIPEDLDLSQEAILQNTDEQTVRSLNGCRVTDQILHLVPNIQNFRTTLRCVKLWAKRRGVYSNVCKEARAVDGLSAVAGFLGGINWALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIREGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSLSTLRVMTEEFQRGDEICEHTLPTNHLPVLVAPVVHLCDNKSSSIFSRVPSEAMEVNKADWDTLFEPYPFFESYKNYLRIDISAENVDDLRNWKGWVKSRLRQLTLKIERNTYGMLQCHPHPGDFSEKSRPLHCSYFMGLQRKQGVPAKEGGQFDMRLTVEEFKHSVNAYTQWKPGMNISISHVKCRNIPAFVFPGGIRPKCPSKVTWVSKRRSELRVSGHGQAEKSQEGKELGANNDRKRKQAEDSRDDLRNSQSFSSLPPSSRDVHEDGNPVSIASSCSVKCDDTELNCMSEQKSEKPDLNFSGECPSGDRETNGSVKSNSQIIPLLAATDRSNFEEAEKVVIQKIVCGPCEVHQAFPEEPEELEDDLEYRNKVKDFGGNLANINLDSTKSAVAAEPVFSQKENSSSTHIYSNGGLEELESELSAEVAHNFVKSAHMDPAELTAPLFSGNPAPVPQRKPLIRLNFTSLGKTADKSS*