Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930310 | XP_003631025.2 | 92.935 | 368 | 8 | 7 | 1 | 364 | 1 | 354 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930310 | sp|O49500|MBR2_ARATH | 46.429 | 112 | 59 | 1 | 246 | 357 | 550 | 660 | 2.60e-27 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0785430 | Msa0930310 | 0.804987 | 1.659138e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930310 | MtrunA17_Chr8g0392341 | 92.935 | 368 | 8 | 7 | 1 | 364 | 1 | 354 | 0.0 | 686 |
| Msa0930310 | MtrunA17_Chr6g0483631 | 56.836 | 373 | 120 | 12 | 15 | 363 | 4 | 359 | 5.99e-121 | 353 |
| Msa0930310 | MtrunA17_Chr1g0153211 | 44.262 | 122 | 66 | 2 | 236 | 357 | 583 | 702 | 1.24e-30 | 123 |
| Msa0930310 | MtrunA17_Chr3g0138951 | 44.186 | 129 | 65 | 3 | 238 | 360 | 405 | 532 | 6.89e-29 | 117 |
| Msa0930310 | MtrunA17_Chr2g0316601 | 43.590 | 117 | 59 | 1 | 253 | 362 | 401 | 517 | 9.99e-27 | 110 |
| Msa0930310 | MtrunA17_Chr1g0147951 | 38.514 | 148 | 68 | 3 | 234 | 358 | 323 | 470 | 5.60e-26 | 108 |
| Msa0930310 | MtrunA17_Chr7g0263911 | 43.182 | 132 | 69 | 4 | 227 | 357 | 506 | 632 | 1.22e-25 | 108 |
| Msa0930310 | MtrunA17_Chr2g0316591 | 47.664 | 107 | 52 | 3 | 253 | 359 | 194 | 296 | 1.75e-24 | 102 |
| Msa0930310 | MtrunA17_Chr1g0181401 | 45.872 | 109 | 54 | 3 | 250 | 357 | 421 | 525 | 4.99e-24 | 103 |
| Msa0930310 | MtrunA17_Chr4g0044601 | 43.590 | 117 | 65 | 1 | 246 | 362 | 583 | 698 | 1.13e-23 | 102 |
| Msa0930310 | MtrunA17_Chr2g0315711 | 37.931 | 116 | 61 | 3 | 253 | 359 | 214 | 327 | 1.67e-19 | 88.2 |
| Msa0930310 | MtrunA17_Chr3g0086891 | 39.175 | 97 | 58 | 1 | 263 | 359 | 348 | 443 | 1.26e-18 | 87.0 |
| Msa0930310 | MtrunA17_Chr8g0352131 | 34.694 | 98 | 63 | 1 | 263 | 360 | 144 | 240 | 8.95e-17 | 79.0 |
| Msa0930310 | MtrunA17_Chr3g0124751 | 39.000 | 100 | 50 | 3 | 266 | 361 | 139 | 231 | 6.95e-16 | 76.3 |
| Msa0930310 | MtrunA17_Chr4g0032561 | 35.714 | 112 | 69 | 2 | 253 | 362 | 132 | 242 | 1.21e-15 | 75.9 |
| Msa0930310 | MtrunA17_Chr5g0401961 | 31.579 | 133 | 87 | 4 | 227 | 358 | 464 | 593 | 2.20e-15 | 77.4 |
| Msa0930310 | MtrunA17_Chr1g0211831 | 35.455 | 110 | 66 | 2 | 253 | 362 | 230 | 334 | 2.83e-15 | 76.3 |
| Msa0930310 | MtrunA17_Chr2g0315681 | 37.500 | 120 | 52 | 5 | 226 | 336 | 71 | 176 | 2.49e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930310 | AT1G73760.1 | 44.809 | 366 | 159 | 9 | 13 | 357 | 17 | 360 | 3.96e-87 | 268 |
| Msa0930310 | AT1G17970.1 | 36.010 | 386 | 196 | 12 | 8 | 363 | 3 | 367 | 7.03e-56 | 187 |
| Msa0930310 | AT1G73760.2 | 42.500 | 280 | 121 | 8 | 13 | 271 | 17 | 277 | 2.17e-50 | 170 |
| Msa0930310 | AT5G10650.1 | 40.476 | 126 | 71 | 1 | 236 | 357 | 391 | 516 | 1.70e-31 | 125 |
| Msa0930310 | AT5G10650.2 | 40.476 | 126 | 71 | 1 | 236 | 357 | 391 | 516 | 1.70e-31 | 125 |
| Msa0930310 | AT4G31450.1 | 40.458 | 131 | 69 | 2 | 235 | 357 | 360 | 489 | 3.83e-30 | 120 |
| Msa0930310 | AT4G31450.2 | 40.458 | 131 | 69 | 2 | 235 | 357 | 360 | 489 | 3.83e-30 | 120 |
| Msa0930310 | AT4G34040.1 | 46.429 | 112 | 59 | 1 | 246 | 357 | 550 | 660 | 2.65e-28 | 116 |
| Msa0930310 | AT5G24870.3 | 33.696 | 184 | 109 | 3 | 187 | 357 | 326 | 509 | 1.54e-27 | 113 |
| Msa0930310 | AT5G24870.1 | 33.696 | 184 | 109 | 3 | 187 | 357 | 326 | 509 | 1.54e-27 | 113 |
| Msa0930310 | AT5G24870.2 | 33.696 | 184 | 109 | 3 | 187 | 357 | 326 | 509 | 1.54e-27 | 113 |
| Msa0930310 | AT2G15530.5 | 46.154 | 117 | 61 | 1 | 246 | 360 | 584 | 700 | 1.71e-27 | 114 |
| Msa0930310 | AT2G15530.3 | 46.154 | 117 | 61 | 1 | 246 | 360 | 584 | 700 | 1.71e-27 | 114 |
| Msa0930310 | AT2G15530.2 | 46.154 | 117 | 61 | 1 | 246 | 360 | 584 | 700 | 1.71e-27 | 114 |
| Msa0930310 | AT2G15530.1 | 46.154 | 117 | 61 | 1 | 246 | 360 | 584 | 700 | 1.71e-27 | 114 |
| Msa0930310 | AT2G15530.7 | 46.154 | 117 | 61 | 1 | 246 | 360 | 584 | 700 | 1.71e-27 | 114 |
| Msa0930310 | AT2G15530.6 | 46.154 | 117 | 61 | 1 | 246 | 360 | 562 | 678 | 1.91e-27 | 114 |
| Msa0930310 | AT1G45180.2 | 42.748 | 131 | 72 | 2 | 227 | 357 | 458 | 585 | 1.18e-26 | 111 |
| Msa0930310 | AT5G42940.2 | 39.695 | 131 | 74 | 3 | 229 | 357 | 551 | 678 | 1.55e-26 | 111 |
| Msa0930310 | AT5G42940.1 | 39.695 | 131 | 74 | 3 | 229 | 357 | 551 | 678 | 1.55e-26 | 111 |
| Msa0930310 | AT1G45180.1 | 42.748 | 131 | 72 | 2 | 227 | 357 | 506 | 633 | 1.99e-26 | 111 |
| Msa0930310 | AT1G45180.3 | 42.748 | 131 | 72 | 2 | 227 | 357 | 506 | 633 | 1.99e-26 | 111 |
| Msa0930310 | AT1G45180.4 | 42.748 | 131 | 72 | 2 | 227 | 357 | 506 | 633 | 1.99e-26 | 111 |
| Msa0930310 | AT1G53190.2 | 37.681 | 138 | 76 | 4 | 231 | 360 | 351 | 486 | 3.99e-26 | 109 |
| Msa0930310 | AT1G53190.1 | 37.681 | 138 | 76 | 4 | 231 | 360 | 351 | 486 | 3.99e-26 | 109 |
| Msa0930310 | AT2G15530.4 | 45.614 | 114 | 60 | 1 | 246 | 357 | 584 | 697 | 2.68e-25 | 107 |
| Msa0930310 | AT3G15070.1 | 36.937 | 111 | 67 | 1 | 253 | 360 | 362 | 472 | 2.31e-22 | 98.6 |
| Msa0930310 | AT3G15070.2 | 36.937 | 111 | 67 | 1 | 253 | 360 | 362 | 472 | 2.31e-22 | 98.6 |
| Msa0930310 | AT2G37150.10 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.11 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.9 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.12 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.5 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.4 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.2 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.8 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.7 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.6 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.1 | 45.872 | 109 | 55 | 3 | 250 | 357 | 429 | 534 | 2.73e-20 | 92.8 |
| Msa0930310 | AT2G37150.14 | 45.872 | 109 | 55 | 3 | 250 | 357 | 445 | 550 | 3.04e-20 | 92.4 |
| Msa0930310 | AT2G37150.13 | 45.872 | 109 | 55 | 3 | 250 | 357 | 445 | 550 | 3.04e-20 | 92.4 |
| Msa0930310 | AT2G37150.15 | 45.872 | 109 | 55 | 3 | 250 | 357 | 445 | 550 | 3.04e-20 | 92.4 |
| Msa0930310 | AT2G37150.3 | 45.872 | 109 | 55 | 3 | 250 | 357 | 482 | 587 | 4.07e-20 | 92.4 |
| Msa0930310 | AT3G63530.2 | 35.714 | 98 | 62 | 1 | 263 | 360 | 145 | 241 | 2.70e-16 | 78.2 |
| Msa0930310 | AT3G63530.1 | 35.714 | 98 | 62 | 1 | 263 | 360 | 145 | 241 | 2.70e-16 | 78.2 |
| Msa0930310 | AT1G36950.1 | 37.143 | 105 | 58 | 2 | 256 | 358 | 24 | 122 | 3.61e-16 | 77.4 |
| Msa0930310 | AT4G00070.1 | 38.144 | 97 | 52 | 2 | 256 | 350 | 88 | 178 | 7.52e-16 | 75.1 |
| Msa0930310 | AT3G47180.1 | 40.217 | 92 | 51 | 3 | 266 | 356 | 115 | 203 | 5.76e-15 | 73.6 |
| Msa0930310 | AT3G19910.1 | 33.000 | 100 | 64 | 1 | 262 | 361 | 237 | 333 | 1.88e-14 | 73.9 |
| Msa0930310 | AT5G52140.1 | 37.500 | 104 | 58 | 2 | 264 | 360 | 175 | 278 | 3.52e-14 | 72.4 |
| Msa0930310 | AT5G67120.1 | 36.082 | 97 | 56 | 2 | 266 | 361 | 181 | 272 | 4.06e-14 | 72.4 |
| Msa0930310 | AT5G10650.3 | 35.955 | 89 | 53 | 1 | 236 | 320 | 391 | 479 | 3.49e-13 | 70.9 |
Find 74 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTTGTTGATTTGGTTTC+TGG | 0.069335 | 6_2:+79224937 | None:intergenic |
| TAATATATGCTATTGGATTA+AGG | 0.228973 | 6_2:-79222179 | Msa0930310:three_prime_UTR |
| TCCGGAAAAGAGAAGGTTTC+TGG | 0.229241 | 6_2:+79224137 | None:intergenic |
| AGACATTCTCATCCTAAAAT+AGG | 0.240044 | 6_2:-79222292 | Msa0930310:three_prime_UTR |
| TTCTGTTTCTGTTTCTGAAA+TGG | 0.255827 | 6_2:+79224904 | None:intergenic |
| ATCATTGTATTTGCCTTAGA+AGG | 0.281010 | 6_2:+79222113 | None:intergenic |
| ATCTTTAGATCATCCTTCTA+AGG | 0.290670 | 6_2:-79222126 | Msa0930310:three_prime_UTR |
| CACGTGATCTTTACAGAGAT+TGG | 0.310639 | 6_2:-79223339 | Msa0930310:CDS |
| GCAGCTACCTTCAGAGGTTT+AGG | 0.311213 | 6_2:-79224749 | Msa0930310:CDS |
| TCTGTTTCTGTTTCTGAAAT+GGG | 0.311699 | 6_2:+79224905 | None:intergenic |
| TGAGGTTGTTGTTGTTTCAT+TGG | 0.320662 | 6_2:+79224811 | None:intergenic |
| CACTGCTGGTGCTTCTCAAC+AGG | 0.353298 | 6_2:-79224723 | Msa0930310:CDS |
| CAACAAGGAGGCTAAAAGTT+TGG | 0.362182 | 6_2:+79222211 | None:intergenic |
| CAGAGATGAAATTGTGGACT+TGG | 0.368102 | 6_2:+79224841 | None:intergenic |
| GTTTGGTGTGGTCCTGGAAT+TGG | 0.370161 | 6_2:-79224560 | Msa0930310:CDS |
| GAATCAACAAGAATGGGATT+TGG | 0.372560 | 6_2:+79225045 | None:intergenic |
| CTGTTTCTGAAATGGGTTTG+TGG | 0.379427 | 6_2:+79224912 | None:intergenic |
| GGATTAAGGTTTCTTATCAA+TGG | 0.380778 | 6_2:-79222165 | Msa0930310:three_prime_UTR |
| AGCTTAGTCTTCCTTATGTA+AGG | 0.382634 | 6_2:+79223083 | None:intergenic |
| CACAGAAGACATGTTTGGTT+TGG | 0.388980 | 6_2:+79225009 | None:intergenic |
| CAGAGCAACAACATATGAAA+TGG | 0.397557 | 6_2:-79224970 | Msa0930310:CDS |
| CAAGATGTTTGGTGTGGTCC+TGG | 0.397639 | 6_2:-79224566 | Msa0930310:CDS |
| CATGTTTGGTTTGGTTTGGT+TGG | 0.415476 | 6_2:+79225018 | None:intergenic |
| CTTTCAATGTATACAACAAT+GGG | 0.432717 | 6_2:-79222395 | Msa0930310:CDS |
| GGTAGACAGCAGTGCGCCTT+CGG | 0.433538 | 6_2:+79224159 | None:intergenic |
| TCTGCTGAAAATCCAATTCC+AGG | 0.438438 | 6_2:+79224548 | None:intergenic |
| GCTTCAAGGAAGAATACTAA+TGG | 0.441507 | 6_2:-79223377 | Msa0930310:CDS |
| AGAATCGGTTATGTGAATAC+TGG | 0.446499 | 6_2:-79223128 | Msa0930310:CDS |
| TGGAGAAGAATCAACAAGAA+TGG | 0.451686 | 6_2:+79225038 | None:intergenic |
| TGTGTCACAGAAGACATGTT+TGG | 0.452221 | 6_2:+79225004 | None:intergenic |
| AAGACATGTTTGGTTTGGTT+TGG | 0.464614 | 6_2:+79225014 | None:intergenic |
| TTCTCAACAGGTGTCGGTGC+CGG | 0.464786 | 6_2:-79224711 | Msa0930310:CDS |
| GGAGAAGAATCAACAAGAAT+GGG | 0.470963 | 6_2:+79225039 | None:intergenic |
| CCGGAAAAGAGAAGGTTTCT+GGG | 0.472828 | 6_2:+79224138 | None:intergenic |
| GAGTCTGTAATATATGCTAT+TGG | 0.473951 | 6_2:-79222186 | Msa0930310:three_prime_UTR |
| CTGCCCTGTGTGTAAGCAGC+AGG | 0.483447 | 6_2:-79222356 | Msa0930310:CDS |
| CTTGAGCTCGGTGAGAGAAT+CGG | 0.487392 | 6_2:-79223143 | Msa0930310:CDS |
| TGATTCGTGCTTCAGCAGAT+TGG | 0.488872 | 6_2:-79224685 | Msa0930310:CDS |
| AGCCTTCATCTTCCTTCCGA+AGG | 0.489286 | 6_2:-79224175 | Msa0930310:CDS |
| AGAGGTTTAGGATGCACTGC+TGG | 0.490523 | 6_2:-79224737 | Msa0930310:CDS |
| TTGAAGATAATGGCGCTTCA+AGG | 0.491059 | 6_2:-79223391 | Msa0930310:intron |
| TGGACTTGGAGCGTGTGGAT+TGG | 0.504134 | 6_2:+79224855 | None:intergenic |
| AAAATGTTGGGATCGGTGTC+CGG | 0.509723 | 6_2:+79224119 | None:intergenic |
| TTGTTGATTTGGTTTCTGGA+TGG | 0.520614 | 6_2:+79224941 | None:intergenic |
| CTTCAAGGAAGAATACTAAT+GGG | 0.521708 | 6_2:-79223376 | Msa0930310:CDS |
| ATGAGATGGAACCTTACATA+AGG | 0.523941 | 6_2:-79223094 | Msa0930310:CDS |
| ACTTTCAATGTATACAACAA+TGG | 0.529407 | 6_2:-79222396 | Msa0930310:CDS |
| GAGCATGCTGTGAAAATGTT+GGG | 0.537021 | 6_2:+79224107 | None:intergenic |
| TCTGCAGCAGCTACCTTCAG+AGG | 0.546370 | 6_2:-79224755 | Msa0930310:CDS |
| GACAGCAGTGCGCCTTCGGA+AGG | 0.548094 | 6_2:+79224163 | None:intergenic |
| TGGACTTAAAGAAGATGAGA+TGG | 0.549079 | 6_2:-79223108 | Msa0930310:CDS |
| TGGTGCTTCTCAACAGGTGT+CGG | 0.554363 | 6_2:-79224717 | Msa0930310:CDS |
| TCAGCAGATTGGCCTCATCA+AGG | 0.557093 | 6_2:-79224674 | Msa0930310:CDS |
| AGAGCATGCTGTGAAAATGT+TGG | 0.565371 | 6_2:+79224106 | None:intergenic |
| CAGCAGATTGGCCTCATCAA+GGG | 0.570341 | 6_2:-79224673 | Msa0930310:CDS |
| GCAACCTGCTGCTTACACAC+AGG | 0.572960 | 6_2:+79222352 | None:intergenic |
| CGCCTTCGGAAGGAAGATGA+AGG | 0.573947 | 6_2:+79224173 | None:intergenic |
| CAACCTGCTGCTTACACACA+GGG | 0.578724 | 6_2:+79222353 | None:intergenic |
| ATCGGTGTCCGGAAAAGAGA+AGG | 0.579710 | 6_2:+79224130 | None:intergenic |
| TGACAGCAATTGCTTGAGCT+CGG | 0.580670 | 6_2:-79223155 | Msa0930310:intron |
| TTTGTTAATGGGTTGTTGTG+AGG | 0.581700 | 6_2:+79224793 | None:intergenic |
| AAGCAGATGATGAGCTTGCG+AGG | 0.583826 | 6_2:-79222441 | Msa0930310:CDS |
| AGTGCATCCTAAACCTCTGA+AGG | 0.584439 | 6_2:+79224742 | None:intergenic |
| GAGAAGCAGAGATGAAATTG+TGG | 0.590057 | 6_2:+79224835 | None:intergenic |
| TGTTGATAACATGTCATATG+AGG | 0.603689 | 6_2:-79223308 | Msa0930310:intron |
| TGCTGTGAAAATGTTGGGAT+CGG | 0.608642 | 6_2:+79224112 | None:intergenic |
| AATTGTGGACTTGGAGCGTG+TGG | 0.637667 | 6_2:+79224850 | None:intergenic |
| GCTGAAGCACGAATCACTGC+CGG | 0.639164 | 6_2:+79224692 | None:intergenic |
| CAAGGAAGAATACTAATGGG+AGG | 0.689238 | 6_2:-79223373 | Msa0930310:CDS |
| GAAATATCTCTGATATGACG+AGG | 0.695301 | 6_2:+79224065 | None:intergenic |
| ATATTACAGACTCCTCAACA+AGG | 0.696962 | 6_2:+79222196 | None:intergenic |
| AAATATCTCTGATATGACGA+GGG | 0.711372 | 6_2:+79224066 | None:intergenic |
| CGACAAGATAACTCACAGAG+AGG | 0.725536 | 6_2:-79224456 | Msa0930310:intron |
| TTACAGACTCCTCAACAAGG+AGG | 0.770291 | 6_2:+79222199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAGAAATGATTAT+TGG | + | chr6_2:79223900-79223919 | None:intergenic | 10.0% |
| !! | ATGTATATCATAAATTTAAT+TGG | + | chr6_2:79224680-79224699 | None:intergenic | 10.0% |
| !!! | TCATAATATAATTTTGTCAA+TGG | - | chr6_2:79224527-79224546 | Msa0930310:CDS | 15.0% |
| !! | AAAAAATAACCTAAATACAT+AGG | - | chr6_2:79224551-79224570 | Msa0930310:CDS | 15.0% |
| !!! | CATTTTTAAATTCATGATTT+TGG | + | chr6_2:79224615-79224634 | None:intergenic | 15.0% |
| !! | CAAAATCATGAATTTAAAAA+TGG | - | chr6_2:79224613-79224632 | Msa0930310:CDS | 15.0% |
| !!! | AAAAATTATACACCTATTTT+AGG | + | chr6_2:79224893-79224912 | None:intergenic | 15.0% |
| !!! | TATTCAGAATTTTCATTTTT+TGG | - | chr6_2:79224915-79224934 | Msa0930310:CDS | 15.0% |
| !!! | AAGTTGATCTTTTTGTTAAT+GGG | + | chr6_2:79222391-79222410 | None:intergenic | 20.0% |
| !!! | AAAGTTGATCTTTTTGTTAA+TGG | + | chr6_2:79222392-79222411 | None:intergenic | 20.0% |
| !! | AAACTTGATCATAACTATAT+TGG | - | chr6_2:79222971-79222990 | Msa0930310:intron | 20.0% |
| !! | AAAAAGAAAGTAAATTACCA+TGG | + | chr6_2:79223251-79223270 | None:intergenic | 20.0% |
| !!! | ATAAAAATGATCAAAGTACT+TGG | + | chr6_2:79223329-79223348 | None:intergenic | 20.0% |
| !!! | ACTAAATTCTAAAATTGGAT+TGG | - | chr6_2:79223438-79223457 | Msa0930310:intron | 20.0% |
| !! | AATCATGAATTTAAAAATGG+AGG | - | chr6_2:79224616-79224635 | Msa0930310:CDS | 20.0% |
| !! | ATCATGAATTTAAAAATGGA+GGG | - | chr6_2:79224617-79224636 | Msa0930310:CDS | 20.0% |
| !! | TAATATATGCTATTGGATTA+AGG | - | chr6_2:79224991-79225010 | Msa0930310:CDS | 20.0% |
| !! | GAACATCACAATTTTCAAAA+TGG | + | chr6_2:79222763-79222782 | None:intergenic | 25.0% |
| ! | TTCTTCTATGTACATTAGTT+AGG | - | chr6_2:79222780-79222799 | Msa0930310:intron | 25.0% |
| ! | TCTTGTGTATTCTTTCATTA+AGG | - | chr6_2:79223159-79223178 | Msa0930310:intron | 25.0% |
| ! | CATAAAAACTAAGCAAAATC+TGG | - | chr6_2:79223210-79223229 | Msa0930310:intron | 25.0% |
| ! | TGTATAGCATTTGAATGTAT+TGG | - | chr6_2:79223413-79223432 | Msa0930310:intron | 25.0% |
| !!! | TGGCTACTAAATTCTAAAAT+TGG | - | chr6_2:79223433-79223452 | Msa0930310:intron | 25.0% |
| !! | GATTTGGTATATTCTATTCA+AGG | + | chr6_2:79223468-79223487 | None:intergenic | 25.0% |
| ! | AATTAATGCCTACTTAAAGT+AGG | - | chr6_2:79223530-79223549 | Msa0930310:intron | 25.0% |
| !! | TTGATTGCGATTTTTATGTT+AGG | - | chr6_2:79223595-79223614 | Msa0930310:intron | 25.0% |
| !!! | ACATGATTTTTTCAAGAAGT+AGG | - | chr6_2:79223620-79223639 | Msa0930310:intron | 25.0% |
| ! | ATGTTGTAAATTTCTTTGCA+TGG | - | chr6_2:79223649-79223668 | Msa0930310:intron | 25.0% |
| ! | TTGCATATTCTCATTATTGT+TGG | - | chr6_2:79223752-79223771 | Msa0930310:intron | 25.0% |
| !!! | TGTTGGAATTTTGAAGATAA+TGG | - | chr6_2:79223769-79223788 | Msa0930310:intron | 25.0% |
| ! | AAATCGTAGATTGAGAAATA+GGG | + | chr6_2:79224241-79224260 | None:intergenic | 25.0% |
| ! | AAAATCGTAGATTGAGAAAT+AGG | + | chr6_2:79224242-79224261 | None:intergenic | 25.0% |
| ! | AAATAACCTAAATACATAGG+TGG | - | chr6_2:79224554-79224573 | Msa0930310:CDS | 25.0% |
| !!! | ATCAGACATTTTGAAAATTG+TGG | - | chr6_2:79224587-79224606 | Msa0930310:CDS | 25.0% |
| !!! | TCAGACATTTTGAAAATTGT+GGG | - | chr6_2:79224588-79224607 | Msa0930310:CDS | 25.0% |
| !! | CATGTTTAATTTATGAGTAC+AGG | - | chr6_2:79224697-79224716 | Msa0930310:CDS | 25.0% |
| ! | ACTTTCAATGTATACAACAA+TGG | - | chr6_2:79224774-79224793 | Msa0930310:CDS | 25.0% |
| ! | CTTTCAATGTATACAACAAT+GGG | - | chr6_2:79224775-79224794 | Msa0930310:CDS | 25.0% |
| !! | TTGGAAATTGATTTTTGCAG+AGG | + | chr6_2:79222109-79222128 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGATTTGGTTTC+TGG | + | chr6_2:79222236-79222255 | None:intergenic | 30.0% |
| !!! | TGTGGTTTTTGTTGTTGATT+TGG | + | chr6_2:79222243-79222262 | None:intergenic | 30.0% |
| !! | TCTGTTTCTGTTTCTGAAAT+GGG | + | chr6_2:79222268-79222287 | None:intergenic | 30.0% |
| !! | TTCTGTTTCTGTTTCTGAAA+TGG | + | chr6_2:79222269-79222288 | None:intergenic | 30.0% |
| !!! | TGGATTTGTTTTGTGTTAAG+AGG | + | chr6_2:79222298-79222317 | None:intergenic | 30.0% |
| !!! | ATTCTTGTGCTTCTTTTTTC+TGG | + | chr6_2:79222530-79222549 | None:intergenic | 30.0% |
| !!! | GTGTTGATTTTCAAGATGTT+TGG | - | chr6_2:79222593-79222612 | Msa0930310:intron | 30.0% |
| ! | ACAGACATCTATGATTAGTT+TGG | - | chr6_2:79222852-79222871 | Msa0930310:intron | 30.0% |
| ! | TGGTGATGAAGTTTAACATA+AGG | + | chr6_2:79222903-79222922 | None:intergenic | 30.0% |
| ! | GTTAAACTTCATCACCATTT+TGG | - | chr6_2:79222906-79222925 | Msa0930310:intron | 30.0% |
| ACTGTTATCAGAAACCAAAA+TGG | + | chr6_2:79222923-79222942 | None:intergenic | 30.0% | |
| AAATATCTCTGATATGACGA+GGG | + | chr6_2:79223107-79223126 | None:intergenic | 30.0% | |
| GCGATGTTAAAAACATGATT+TGG | + | chr6_2:79223484-79223503 | None:intergenic | 30.0% | |
| TGTTGAGTAAGTCAATATGA+TGG | - | chr6_2:79223679-79223698 | Msa0930310:intron | 30.0% | |
| TAACTTAGCAAAGACTTGAT+TGG | + | chr6_2:79223711-79223730 | None:intergenic | 30.0% | |
| CTTCAAGGAAGAATACTAAT+GGG | - | chr6_2:79223794-79223813 | Msa0930310:intron | 30.0% | |
| !! | TGTTGATAACATGTCATATG+AGG | - | chr6_2:79223862-79223881 | Msa0930310:intron | 30.0% |
| ! | AGTTTTACAAACTAACTACC+TGG | + | chr6_2:79224167-79224186 | None:intergenic | 30.0% |
| AATCGTAGATTGAGAAATAG+GGG | + | chr6_2:79224240-79224259 | None:intergenic | 30.0% | |
| ! | GTCGGTCAATTTTAAATTTG+AGG | + | chr6_2:79224269-79224288 | None:intergenic | 30.0% |
| !!! | ATTCTCACTTTTTTTGAGCA+AGG | - | chr6_2:79224379-79224398 | Msa0930310:intron | 30.0% |
| ! | GTTTAATTTATGAGTACAGG+AGG | - | chr6_2:79224700-79224719 | Msa0930310:CDS | 30.0% |
| AGACATTCTCATCCTAAAAT+AGG | - | chr6_2:79224878-79224897 | Msa0930310:CDS | 30.0% | |
| GAGTCTGTAATATATGCTAT+TGG | - | chr6_2:79224984-79225003 | Msa0930310:CDS | 30.0% | |
| GGATTAAGGTTTCTTATCAA+TGG | - | chr6_2:79225005-79225024 | Msa0930310:exon | 30.0% | |
| ATCTTTAGATCATCCTTCTA+AGG | - | chr6_2:79225044-79225063 | Msa0930310:five_prime_UTR | 30.0% | |
| ATCATTGTATTTGCCTTAGA+AGG | + | chr6_2:79225060-79225079 | None:intergenic | 30.0% | |
| GAATCAACAAGAATGGGATT+TGG | + | chr6_2:79222128-79222147 | None:intergenic | 35.0% | |
| GGAGAAGAATCAACAAGAAT+GGG | + | chr6_2:79222134-79222153 | None:intergenic | 35.0% | |
| TGGAGAAGAATCAACAAGAA+TGG | + | chr6_2:79222135-79222154 | None:intergenic | 35.0% | |
| !! | AAGACATGTTTGGTTTGGTT+TGG | + | chr6_2:79222159-79222178 | None:intergenic | 35.0% |
| CAGAGCAACAACATATGAAA+TGG | - | chr6_2:79222200-79222219 | Msa0930310:three_prime_UTR | 35.0% | |
| !! | TTGTTGATTTGGTTTCTGGA+TGG | + | chr6_2:79222232-79222251 | None:intergenic | 35.0% |
| !! | TGAGGTTGTTGTTGTTTCAT+TGG | + | chr6_2:79222362-79222381 | None:intergenic | 35.0% |
| !! | TTTGTTAATGGGTTGTTGTG+AGG | + | chr6_2:79222380-79222399 | None:intergenic | 35.0% |
| !! | GATTTTCAAGATGTTTGGTG+TGG | - | chr6_2:79222598-79222617 | Msa0930310:intron | 35.0% |
| ! | ATTTTCACAGCATGCTCTTT+TGG | - | chr6_2:79223069-79223088 | Msa0930310:CDS | 35.0% |
| GAAATATCTCTGATATGACG+AGG | + | chr6_2:79223108-79223127 | None:intergenic | 35.0% | |
| ! | TTCGTCTGATGATTTTTCTG+AGG | - | chr6_2:79223125-79223144 | Msa0930310:CDS | 35.0% |
| AATGCCTACTTAAAGTAGGA+AGG | - | chr6_2:79223534-79223553 | Msa0930310:intron | 35.0% | |
| AACACCTTCCTACTTTAAGT+AGG | + | chr6_2:79223541-79223560 | None:intergenic | 35.0% | |
| !! | CTTAAAGTAGGAAGGTGTTA+TGG | - | chr6_2:79223542-79223561 | Msa0930310:intron | 35.0% |
| GCTTCAAGGAAGAATACTAA+TGG | - | chr6_2:79223793-79223812 | Msa0930310:intron | 35.0% | |
| AGAATCGGTTATGTGAATAC+TGG | - | chr6_2:79224042-79224061 | Msa0930310:intron | 35.0% | |
| TGGACTTAAAGAAGATGAGA+TGG | - | chr6_2:79224062-79224081 | Msa0930310:CDS | 35.0% | |
| ATGAGATGGAACCTTACATA+AGG | - | chr6_2:79224076-79224095 | Msa0930310:CDS | 35.0% | |
| ! | AGCTTAGTCTTCCTTATGTA+AGG | + | chr6_2:79224090-79224109 | None:intergenic | 35.0% |
| ATCGTAGATTGAGAAATAGG+GGG | + | chr6_2:79224239-79224258 | None:intergenic | 35.0% | |
| AATGCATAGGTAGAAGGAAA+AGG | + | chr6_2:79224291-79224310 | None:intergenic | 35.0% | |
| TGTTGAAGATGTAGTAAGTG+AGG | - | chr6_2:79224322-79224341 | Msa0930310:intron | 35.0% | |
| ATATTACAGACTCCTCAACA+AGG | + | chr6_2:79224977-79224996 | None:intergenic | 35.0% | |
| !! | CATGTTTGGTTTGGTTTGGT+TGG | + | chr6_2:79222155-79222174 | None:intergenic | 40.0% |
| CACAGAAGACATGTTTGGTT+TGG | + | chr6_2:79222164-79222183 | None:intergenic | 40.0% | |
| TGTGTCACAGAAGACATGTT+TGG | + | chr6_2:79222169-79222188 | None:intergenic | 40.0% | |
| !! | CTGTTTCTGAAATGGGTTTG+TGG | + | chr6_2:79222261-79222280 | None:intergenic | 40.0% |
| CAGAGATGAAATTGTGGACT+TGG | + | chr6_2:79222332-79222351 | None:intergenic | 40.0% | |
| GAGAAGCAGAGATGAAATTG+TGG | + | chr6_2:79222338-79222357 | None:intergenic | 40.0% | |
| TCTGCTGAAAATCCAATTCC+AGG | + | chr6_2:79222625-79222644 | None:intergenic | 40.0% | |
| TGCTGTGAAAATGTTGGGAT+CGG | + | chr6_2:79223061-79223080 | None:intergenic | 40.0% | |
| GAGCATGCTGTGAAAATGTT+GGG | + | chr6_2:79223066-79223085 | None:intergenic | 40.0% | |
| AGAGCATGCTGTGAAAATGT+TGG | + | chr6_2:79223067-79223086 | None:intergenic | 40.0% | |
| GGTCTGTCTATATCAAACCA+TGG | - | chr6_2:79223231-79223250 | Msa0930310:intron | 40.0% | |
| ! | TTGAAGATAATGGCGCTTCA+AGG | - | chr6_2:79223779-79223798 | Msa0930310:intron | 40.0% |
| CAAGGAAGAATACTAATGGG+AGG | - | chr6_2:79223797-79223816 | Msa0930310:intron | 40.0% | |
| CACGTGATCTTTACAGAGAT+TGG | - | chr6_2:79223831-79223850 | Msa0930310:intron | 40.0% | |
| GACAACATATCAACAGCTTG+AGG | + | chr6_2:79223942-79223961 | None:intergenic | 40.0% | |
| ACAAAGATGCATGCAAGTAC+TGG | + | chr6_2:79223964-79223983 | None:intergenic | 40.0% | |
| CATAGGTAGAAGGAAAAGGT+CGG | + | chr6_2:79224287-79224306 | None:intergenic | 40.0% | |
| CCTCAAAATGCATAGGTAGA+AGG | + | chr6_2:79224297-79224316 | None:intergenic | 40.0% | |
| ! | CCTTCTACCTATGCATTTTG+AGG | - | chr6_2:79224294-79224313 | Msa0930310:intron | 40.0% |
| CATTCAGCCTCAAAATGCAT+AGG | + | chr6_2:79224304-79224323 | None:intergenic | 40.0% | |
| ! | CTTCGTTGGTTATATGACAC+AGG | - | chr6_2:79224348-79224367 | Msa0930310:intron | 40.0% |
| TTGGTTATATGACACAGGCT+AGG | - | chr6_2:79224353-79224372 | Msa0930310:intron | 40.0% | |
| CTTCTGCCACCTATGTATTT+AGG | + | chr6_2:79224563-79224582 | None:intergenic | 40.0% | |
| CAACAAGGAGGCTAAAAGTT+TGG | + | chr6_2:79224962-79224981 | None:intergenic | 40.0% | |
| ! | AACTTTTAGCCTCCTTGTTG+AGG | - | chr6_2:79224962-79224981 | Msa0930310:CDS | 40.0% |
| AGTGCATCCTAAACCTCTGA+AGG | + | chr6_2:79222431-79222450 | None:intergenic | 45.0% | |
| TGATTCGTGCTTCAGCAGAT+TGG | - | chr6_2:79222485-79222504 | Msa0930310:intron | 45.0% | |
| !! | CTGGTTTTCTTCCCTTGATG+AGG | + | chr6_2:79222511-79222530 | None:intergenic | 45.0% |
| CGACAAGATAACTCACAGAG+AGG | - | chr6_2:79222714-79222733 | Msa0930310:intron | 45.0% | |
| CCGGAAAAGAGAAGGTTTCT+GGG | + | chr6_2:79223035-79223054 | None:intergenic | 45.0% | |
| ! | CCCAGAAACCTTCTCTTTTC+CGG | - | chr6_2:79223032-79223051 | Msa0930310:CDS | 45.0% |
| TCCGGAAAAGAGAAGGTTTC+TGG | + | chr6_2:79223036-79223055 | None:intergenic | 45.0% | |
| ! | AAAATGTTGGGATCGGTGTC+CGG | + | chr6_2:79223054-79223073 | None:intergenic | 45.0% |
| TGACAGCAATTGCTTGAGCT+CGG | - | chr6_2:79224015-79224034 | Msa0930310:intron | 45.0% | |
| ! | CAAAAAGTGCAGCATTTGCC+AGG | - | chr6_2:79224146-79224165 | Msa0930310:CDS | 45.0% |
| AGTAAGTGAGGCAACTTCGT+TGG | - | chr6_2:79224334-79224353 | Msa0930310:intron | 45.0% | |
| TTACAGACTCCTCAACAAGG+AGG | + | chr6_2:79224974-79224993 | None:intergenic | 45.0% | |
| AATTGTGGACTTGGAGCGTG+TGG | + | chr6_2:79222323-79222342 | None:intergenic | 50.0% | |
| GCAGCTACCTTCAGAGGTTT+AGG | - | chr6_2:79222421-79222440 | Msa0930310:CDS | 50.0% | |
| ! | AGAGGTTTAGGATGCACTGC+TGG | - | chr6_2:79222433-79222452 | Msa0930310:CDS | 50.0% |
| TGGTGCTTCTCAACAGGTGT+CGG | - | chr6_2:79222453-79222472 | Msa0930310:CDS | 50.0% | |
| !! | TCAGCAGATTGGCCTCATCA+AGG | - | chr6_2:79222496-79222515 | Msa0930310:intron | 50.0% |
| !! | CAGCAGATTGGCCTCATCAA+GGG | - | chr6_2:79222497-79222516 | Msa0930310:intron | 50.0% |
| !! | CAAGATGTTTGGTGTGGTCC+TGG | - | chr6_2:79222604-79222623 | Msa0930310:intron | 50.0% |
| !! | GTTTGGTGTGGTCCTGGAAT+TGG | - | chr6_2:79222610-79222629 | Msa0930310:intron | 50.0% |
| AGCCTTCATCTTCCTTCCGA+AGG | - | chr6_2:79222995-79223014 | Msa0930310:intron | 50.0% | |
| ! | ATCGGTGTCCGGAAAAGAGA+AGG | + | chr6_2:79223043-79223062 | None:intergenic | 50.0% |
| ! | CTTGAGCTCGGTGAGAGAAT+CGG | - | chr6_2:79224027-79224046 | Msa0930310:intron | 50.0% |
| AAGCAGATGATGAGCTTGCG+AGG | - | chr6_2:79224729-79224748 | Msa0930310:CDS | 50.0% | |
| ! | CAACCTGCTGCTTACACACA+GGG | + | chr6_2:79224820-79224839 | None:intergenic | 50.0% |
| TGGACTTGGAGCGTGTGGAT+TGG | + | chr6_2:79222318-79222337 | None:intergenic | 55.0% | |
| TCTGCAGCAGCTACCTTCAG+AGG | - | chr6_2:79222415-79222434 | Msa0930310:CDS | 55.0% | |
| CACTGCTGGTGCTTCTCAAC+AGG | - | chr6_2:79222447-79222466 | Msa0930310:CDS | 55.0% | |
| !! | TTCTCAACAGGTGTCGGTGC+CGG | - | chr6_2:79222459-79222478 | Msa0930310:intron | 55.0% |
| GCTGAAGCACGAATCACTGC+CGG | + | chr6_2:79222481-79222500 | None:intergenic | 55.0% | |
| CGCCTTCGGAAGGAAGATGA+AGG | + | chr6_2:79223000-79223019 | None:intergenic | 55.0% | |
| ! | GCAACCTGCTGCTTACACAC+AGG | + | chr6_2:79224821-79224840 | None:intergenic | 55.0% |
| GGTAGACAGCAGTGCGCCTT+CGG | + | chr6_2:79223014-79223033 | None:intergenic | 60.0% | |
| CTGCCCTGTGTGTAAGCAGC+AGG | - | chr6_2:79224814-79224833 | Msa0930310:CDS | 60.0% | |
| GACAGCAGTGCGCCTTCGGA+AGG | + | chr6_2:79223010-79223029 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 79222099 | 79225093 | 79222099 | ID=Msa0930310;Name=Msa0930310 |
| chr6_2 | mRNA | 79222099 | 79225093 | 79222099 | ID=Msa0930310-mRNA-1;Parent=Msa0930310;Name=Msa0930310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=73|1|1|1|1|1|5|240|364 |
| chr6_2 | exon | 79222099 | 79222473 | 79222099 | ID=Msa0930310-mRNA-1:exon:13581;Parent=Msa0930310-mRNA-1 |
| chr6_2 | exon | 79223025 | 79223171 | 79223025 | ID=Msa0930310-mRNA-1:exon:13580;Parent=Msa0930310-mRNA-1 |
| chr6_2 | exon | 79223309 | 79223407 | 79223309 | ID=Msa0930310-mRNA-1:exon:13579;Parent=Msa0930310-mRNA-1 |
| chr6_2 | exon | 79224046 | 79224195 | 79224046 | ID=Msa0930310-mRNA-1:exon:13578;Parent=Msa0930310-mRNA-1 |
| chr6_2 | exon | 79224457 | 79225093 | 79224457 | ID=Msa0930310-mRNA-1:exon:13577;Parent=Msa0930310-mRNA-1 |
| chr6_2 | five_prime_UTR | 79225021 | 79225093 | 79225021 | ID=Msa0930310-mRNA-1:five_prime_utr;Parent=Msa0930310-mRNA-1 |
| chr6_2 | CDS | 79224457 | 79225020 | 79224457 | ID=Msa0930310-mRNA-1:cds;Parent=Msa0930310-mRNA-1 |
| chr6_2 | CDS | 79224046 | 79224195 | 79224046 | ID=Msa0930310-mRNA-1:cds;Parent=Msa0930310-mRNA-1 |
| chr6_2 | CDS | 79223309 | 79223407 | 79223309 | ID=Msa0930310-mRNA-1:cds;Parent=Msa0930310-mRNA-1 |
| chr6_2 | CDS | 79223025 | 79223171 | 79223025 | ID=Msa0930310-mRNA-1:cds;Parent=Msa0930310-mRNA-1 |
| chr6_2 | CDS | 79222339 | 79222473 | 79222339 | ID=Msa0930310-mRNA-1:cds;Parent=Msa0930310-mRNA-1 |
| chr6_2 | three_prime_UTR | 79222099 | 79222338 | 79222099 | ID=Msa0930310-mRNA-1:three_prime_utr;Parent=Msa0930310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
