Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930710 | XP_024629287.1 | 97.574 | 371 | 5 | 1 | 1 | 367 | 1 | 371 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930710 | sp|Q9S7U5|HSFA8_ARATH | 43.697 | 357 | 160 | 6 | 16 | 356 | 17 | 348 | 1.06e-88 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0930710 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001870 | Msa0930710 | 0.874088 | 8.871937e-68 | -8.615850e-47 |
| Msa0576750 | Msa0930710 | 0.877025 | 8.743507e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930710 | MtrunA17_Chr8g0392001 | 97.574 | 371 | 5 | 1 | 1 | 367 | 1 | 371 | 0.0 | 747 |
| Msa0930710 | MtrunA17_Chr5g0410881 | 45.756 | 271 | 129 | 6 | 18 | 272 | 32 | 300 | 5.67e-67 | 219 |
| Msa0930710 | MtrunA17_Chr4g0039891 | 42.910 | 268 | 145 | 3 | 18 | 278 | 12 | 278 | 2.15e-66 | 218 |
| Msa0930710 | MtrunA17_Chr1g0204741 | 49.495 | 198 | 90 | 4 | 18 | 215 | 40 | 227 | 1.08e-55 | 185 |
| Msa0930710 | MtrunA17_Chr7g0260331 | 47.938 | 194 | 97 | 2 | 18 | 211 | 49 | 238 | 2.39e-53 | 180 |
| Msa0930710 | MtrunA17_Chr8g0379701 | 45.274 | 201 | 99 | 3 | 9 | 207 | 3 | 194 | 5.24e-50 | 172 |
| Msa0930710 | MtrunA17_Chr3g0135831 | 45.361 | 194 | 99 | 2 | 18 | 211 | 46 | 232 | 8.15e-50 | 171 |
| Msa0930710 | MtrunA17_Chr6g0467041 | 46.377 | 207 | 96 | 7 | 4 | 210 | 10 | 201 | 1.97e-48 | 166 |
| Msa0930710 | MtrunA17_Chr1g0185131 | 45.161 | 186 | 84 | 3 | 18 | 203 | 32 | 199 | 7.19e-47 | 162 |
| Msa0930710 | MtrunA17_Chr6g0485571 | 46.193 | 197 | 95 | 4 | 16 | 212 | 9 | 194 | 2.46e-45 | 159 |
| Msa0930710 | MtrunA17_Chr4g0071051 | 46.073 | 191 | 89 | 3 | 18 | 208 | 101 | 277 | 2.62e-45 | 160 |
| Msa0930710 | MtrunA17_Chr8g0378061 | 47.396 | 192 | 88 | 6 | 19 | 210 | 23 | 201 | 1.56e-44 | 160 |
| Msa0930710 | MtrunA17_Chr2g0284481 | 44.724 | 199 | 96 | 4 | 9 | 201 | 4 | 194 | 1.57e-44 | 157 |
| Msa0930710 | MtrunA17_Chr2g0330821 | 44.000 | 200 | 99 | 5 | 4 | 203 | 67 | 253 | 7.42e-44 | 155 |
| Msa0930710 | MtrunA17_Chr5g0402291 | 42.938 | 177 | 73 | 2 | 17 | 166 | 8 | 183 | 6.23e-34 | 127 |
| Msa0930710 | MtrunA17_Chr5g0441531 | 59.375 | 96 | 38 | 1 | 17 | 112 | 24 | 118 | 3.59e-33 | 124 |
| Msa0930710 | MtrunA17_Chr3g0134031 | 61.702 | 94 | 35 | 1 | 17 | 110 | 23 | 115 | 4.52e-33 | 126 |
| Msa0930710 | MtrunA17_Chr5g0397881 | 59.574 | 94 | 37 | 1 | 17 | 110 | 23 | 115 | 5.47e-33 | 126 |
| Msa0930710 | MtrunA17_Chr8g0375041 | 44.375 | 160 | 80 | 4 | 15 | 166 | 6 | 164 | 5.48e-33 | 123 |
| Msa0930710 | MtrunA17_Chr6g0472421 | 61.702 | 94 | 35 | 1 | 17 | 110 | 32 | 124 | 2.58e-32 | 124 |
| Msa0930710 | MtrunA17_Chr7g0257331 | 52.941 | 102 | 47 | 1 | 9 | 110 | 13 | 113 | 5.58e-31 | 117 |
| Msa0930710 | MtrunA17_Chr1g0203601 | 58.511 | 94 | 38 | 1 | 17 | 110 | 17 | 109 | 1.18e-30 | 118 |
| Msa0930710 | MtrunA17_Chr4g0047421 | 40.000 | 155 | 83 | 5 | 17 | 162 | 32 | 185 | 2.30e-26 | 104 |
| Msa0930710 | MtrunA17_Chr1g0179311 | 35.928 | 167 | 98 | 3 | 79 | 244 | 14 | 172 | 4.48e-21 | 93.2 |
| Msa0930710 | MtrunA17_Chr1g0179321 | 55.556 | 63 | 27 | 1 | 16 | 78 | 47 | 108 | 1.85e-17 | 77.4 |
| Msa0930710 | MtrunA17_Chr2g0330841 | 36.719 | 128 | 71 | 3 | 79 | 206 | 41 | 158 | 1.35e-15 | 77.4 |
| Msa0930710 | MtrunA17_Chr4g0023771 | 55.738 | 61 | 26 | 1 | 16 | 76 | 13 | 72 | 2.12e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930710 | AT1G67970.1 | 43.697 | 357 | 160 | 6 | 16 | 356 | 17 | 348 | 1.08e-89 | 275 |
| Msa0930710 | AT1G32330.1 | 46.000 | 250 | 123 | 4 | 13 | 251 | 32 | 280 | 6.68e-63 | 209 |
| Msa0930710 | AT1G32330.2 | 46.000 | 250 | 123 | 4 | 13 | 251 | 32 | 280 | 6.72e-63 | 209 |
| Msa0930710 | AT5G16820.1 | 46.694 | 242 | 119 | 4 | 15 | 248 | 24 | 263 | 5.47e-60 | 201 |
| Msa0930710 | AT5G16820.2 | 46.694 | 242 | 119 | 4 | 15 | 248 | 24 | 263 | 5.47e-60 | 201 |
| Msa0930710 | AT4G17750.1 | 46.341 | 246 | 112 | 5 | 18 | 244 | 52 | 296 | 3.38e-59 | 199 |
| Msa0930710 | AT3G22830.1 | 49.261 | 203 | 101 | 2 | 18 | 219 | 61 | 262 | 6.34e-56 | 188 |
| Msa0930710 | AT2G26150.1 | 49.735 | 189 | 88 | 2 | 18 | 206 | 44 | 225 | 7.75e-56 | 186 |
| Msa0930710 | AT2G26150.4 | 49.735 | 189 | 88 | 2 | 18 | 206 | 44 | 225 | 7.75e-56 | 186 |
| Msa0930710 | AT3G02990.1 | 48.848 | 217 | 107 | 3 | 4 | 219 | 9 | 222 | 1.27e-55 | 189 |
| Msa0930710 | AT3G51910.1 | 43.299 | 194 | 88 | 4 | 18 | 211 | 29 | 200 | 1.50e-49 | 168 |
| Msa0930710 | AT5G03720.2 | 43.979 | 191 | 98 | 3 | 16 | 206 | 53 | 234 | 2.20e-47 | 166 |
| Msa0930710 | AT5G03720.1 | 43.979 | 191 | 98 | 3 | 16 | 206 | 53 | 234 | 2.20e-47 | 166 |
| Msa0930710 | AT5G43840.1 | 43.684 | 190 | 86 | 2 | 17 | 206 | 18 | 186 | 3.88e-46 | 159 |
| Msa0930710 | AT3G24520.1 | 43.939 | 198 | 81 | 3 | 16 | 213 | 15 | 182 | 4.44e-46 | 160 |
| Msa0930710 | AT5G45710.3 | 42.453 | 212 | 107 | 3 | 11 | 218 | 6 | 206 | 3.36e-44 | 156 |
| Msa0930710 | AT5G45710.1 | 42.453 | 212 | 107 | 3 | 11 | 218 | 6 | 206 | 3.36e-44 | 156 |
| Msa0930710 | AT4G13980.1 | 44.500 | 200 | 100 | 4 | 4 | 203 | 9 | 197 | 4.97e-44 | 158 |
| Msa0930710 | AT5G54070.1 | 40.909 | 198 | 101 | 2 | 14 | 211 | 67 | 248 | 1.01e-42 | 152 |
| Msa0930710 | AT3G63350.1 | 39.810 | 211 | 112 | 4 | 17 | 227 | 27 | 222 | 1.35e-42 | 150 |
| Msa0930710 | AT4G18880.1 | 45.178 | 197 | 98 | 4 | 12 | 206 | 9 | 197 | 1.26e-39 | 145 |
| Msa0930710 | AT1G46264.1 | 56.140 | 114 | 49 | 1 | 9 | 122 | 25 | 137 | 3.62e-36 | 135 |
| Msa0930710 | AT4G11660.1 | 59.574 | 94 | 37 | 1 | 17 | 110 | 58 | 150 | 6.66e-32 | 124 |
| Msa0930710 | AT5G62020.1 | 54.545 | 110 | 48 | 2 | 2 | 110 | 6 | 114 | 2.01e-31 | 120 |
| Msa0930710 | AT4G36990.1 | 58.511 | 94 | 38 | 1 | 17 | 110 | 13 | 105 | 2.37e-31 | 120 |
| Msa0930710 | AT2G41690.1 | 54.128 | 109 | 43 | 2 | 11 | 113 | 27 | 134 | 3.68e-31 | 119 |
| Msa0930710 | AT2G26150.3 | 42.308 | 130 | 69 | 1 | 77 | 206 | 47 | 170 | 4.19e-23 | 98.2 |
| Msa0930710 | AT2G26150.2 | 42.308 | 130 | 69 | 1 | 77 | 206 | 47 | 170 | 4.19e-23 | 98.2 |
| Msa0930710 | AT4G18870.1 | 48.000 | 100 | 50 | 2 | 7 | 106 | 2 | 99 | 9.03e-21 | 91.7 |
| Msa0930710 | AT4G18870.1 | 41.463 | 123 | 62 | 3 | 15 | 135 | 143 | 257 | 4.85e-20 | 89.7 |
| Msa0930710 | AT4G19630.1 | 35.789 | 95 | 57 | 2 | 15 | 106 | 8 | 101 | 1.84e-12 | 64.3 |
Find 125 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTGTGTTTAAAATAAT+TGG | 0.055938 | 6_2:+79775159 | None:intergenic |
| GTTGAATTTATCAGGGTTTC+AGG | 0.157083 | 6_2:-79774358 | Msa0930710:intron |
| TCTATTTCTTCTTCCTCTTT+AGG | 0.182567 | 6_2:-79775383 | Msa0930710:five_prime_UTR |
| AGGTTCTGGTTGCTTATTAA+AGG | 0.234573 | 6_2:+79773803 | None:intergenic |
| CCGATTAGTATTCAGATATT+AGG | 0.248792 | 6_2:+79773147 | None:intergenic |
| TTGCAAATGAAAACTTCATT+AGG | 0.259058 | 6_2:-79774310 | Msa0930710:CDS |
| TTGATTATTAATAATAATAA+TGG | 0.261671 | 6_2:-79775356 | Msa0930710:exon |
| GGTTCATCGCGATTGTCTTT+TGG | 0.270022 | 6_2:+79774209 | None:intergenic |
| TGCAAATGAAAACTTCATTA+GGG | 0.270385 | 6_2:-79774309 | Msa0930710:CDS |
| TTGGATGGGCTACAGGGATT+TGG | 0.290821 | 6_2:-79773447 | Msa0930710:three_prime_UTR |
| CTTGAATAAATGTTACGATA+TGG | 0.302015 | 6_2:-79775281 | Msa0930710:CDS |
| CGTGCAATGCCCTGGATTCT+TGG | 0.305963 | 6_2:-79773991 | Msa0930710:CDS |
| GCAGCAGATGCTCTCATTCT+TGG | 0.308364 | 6_2:-79774021 | Msa0930710:CDS |
| TTATTGTGTTTAAAATAATT+GGG | 0.319337 | 6_2:+79775160 | None:intergenic |
| CCTAATATCTGAATACTAAT+CGG | 0.328535 | 6_2:-79773147 | Msa0930710:three_prime_UTR |
| TCGGCTTGTGCAAAATAATA+TGG | 0.334891 | 6_2:+79772900 | None:intergenic |
| CATATTACGTTTAGATTGTA+AGG | 0.336425 | 6_2:-79773034 | Msa0930710:three_prime_UTR |
| TTCACCCTAAGGAAAATAAT+TGG | 0.343688 | 6_2:-79773959 | Msa0930710:CDS |
| GTTTCTTGTACCTGATTTAC+CGG | 0.350562 | 6_2:-79773682 | Msa0930710:CDS |
| AACGGAGAATGATTATCTAA+TGG | 0.359885 | 6_2:+79773702 | None:intergenic |
| CAACCGATTCCGTCATCTCT+TGG | 0.371047 | 6_2:-79775246 | Msa0930710:CDS |
| GCGAGCGAGAAGGGTGGTTC+TGG | 0.371236 | 6_2:-79775319 | Msa0930710:CDS |
| TGAAGCGATGATTATGGAAA+TGG | 0.375364 | 6_2:-79773514 | Msa0930710:CDS |
| GCAGTTGTTTGATCCTCATC+TGG | 0.384929 | 6_2:-79773288 | Msa0930710:three_prime_UTR |
| GTGTCCAGTCCCGTCTTGTC+CGG | 0.394335 | 6_2:-79773098 | Msa0930710:three_prime_UTR |
| CTACTGAGTGATCGCCTTGA+AGG | 0.403981 | 6_2:-79774059 | Msa0930710:CDS |
| GATGCTTCTCCATTCCTTCA+AGG | 0.410224 | 6_2:+79774045 | None:intergenic |
| TGATTTACTGCTTCTTGTGA+TGG | 0.416635 | 6_2:+79774188 | None:intergenic |
| CGTCTTGTCCGGGAGTTGTA+TGG | 0.417844 | 6_2:-79773087 | Msa0930710:three_prime_UTR |
| GGAAAATTGATGCAGATCAC+TGG | 0.420160 | 6_2:-79774337 | Msa0930710:CDS |
| TGCTGAAGAATATACGTAGA+AGG | 0.420862 | 6_2:-79774274 | Msa0930710:CDS |
| GTCTGTCATCTTGGTTACCT+TGG | 0.422781 | 6_2:+79773907 | None:intergenic |
| GAACCGTCATCCGGTAAATC+AGG | 0.426775 | 6_2:+79773672 | None:intergenic |
| ACGGAGAATGATTATCTAAT+GGG | 0.429612 | 6_2:+79773703 | None:intergenic |
| GCAGGAGATCGTGGAACAAC+AGG | 0.434299 | 6_2:+79773825 | None:intergenic |
| TCTGTAGAAACCTCAGGTTC+TGG | 0.439677 | 6_2:+79773789 | None:intergenic |
| AAGCAGTAAATCATGGCCTT+TGG | 0.439818 | 6_2:-79774178 | Msa0930710:CDS |
| ATCATCCCATCAGAAGAAAC+TGG | 0.445617 | 6_2:+79773885 | None:intergenic |
| AATAATCAATTAACCTAAAG+AGG | 0.447384 | 6_2:+79775370 | None:intergenic |
| AAGAAACTGGTCTGTCATCT+TGG | 0.448044 | 6_2:+79773898 | None:intergenic |
| AGAAGTTGAGAATCTAAAAT+CGG | 0.450572 | 6_2:-79774153 | Msa0930710:CDS |
| GAACCTGAGGTTTCTACAGA+TGG | 0.463364 | 6_2:-79773786 | Msa0930710:CDS |
| AATTGGCGTTTCTCTGAAGC+AGG | 0.464691 | 6_2:-79773942 | Msa0930710:CDS |
| CTAATATCTGAATACTAATC+GGG | 0.466166 | 6_2:-79773146 | Msa0930710:three_prime_UTR |
| CGAGAAGGGTGGTTCTGGTT+CGG | 0.469624 | 6_2:-79775314 | Msa0930710:CDS |
| GCAGCAACAGCGAGCGAGAA+GGG | 0.473861 | 6_2:-79775328 | Msa0930710:CDS |
| AACCCATCTGTAGAAACCTC+AGG | 0.474952 | 6_2:+79773783 | None:intergenic |
| TGTTCCCACGAACCGTCATC+CGG | 0.475845 | 6_2:+79773663 | None:intergenic |
| GGTTCAGCTGCTTCACCCTA+AGG | 0.476383 | 6_2:-79773970 | Msa0930710:CDS |
| TCGTAACATTTATTCAAGAA+AGG | 0.477793 | 6_2:+79775286 | None:intergenic |
| GCTTACTCTCAGAAGATTCA+AGG | 0.482301 | 6_2:+79774087 | None:intergenic |
| AGCAGCTGAACCAAGAATCC+AGG | 0.483387 | 6_2:+79773981 | None:intergenic |
| ATTTACCGGATGACGGTTCG+TGG | 0.488372 | 6_2:-79773668 | Msa0930710:CDS |
| CATTCACACATCTCATCTGT+TGG | 0.488836 | 6_2:-79775445 | Msa0930710:five_prime_UTR |
| TGTCCAGTCCCGTCTTGTCC+GGG | 0.489640 | 6_2:-79773097 | Msa0930710:three_prime_UTR |
| GAGTGATCGCCTTGAAGGAA+TGG | 0.496645 | 6_2:-79774054 | Msa0930710:CDS |
| CGCGTGGAGTCGAGGGAGGG+AGG | 0.497153 | 6_2:-79775543 | Msa0930710:five_prime_UTR |
| TCTGGTTGCTTATTAAAGGC+AGG | 0.497515 | 6_2:+79773807 | None:intergenic |
| AAACAACTGCTGGAGGAAGA+TGG | 0.498422 | 6_2:+79773301 | None:intergenic |
| GTCATGGTCGTGCAATGCCC+TGG | 0.501216 | 6_2:-79773999 | Msa0930710:CDS |
| TATTGTGTTTAAAATAATTG+GGG | 0.504715 | 6_2:+79775161 | None:intergenic |
| GACAGACCAGTTTCTTCTGA+TGG | 0.504911 | 6_2:-79773891 | Msa0930710:CDS |
| TCTCTGAAGCAGGGAATATG+TGG | 0.508698 | 6_2:-79773932 | Msa0930710:CDS |
| GATTCTCAACTTCTCTCCAA+AGG | 0.510423 | 6_2:+79774162 | None:intergenic |
| GTAAGGAAGAGCGGTCTTGA+AGG | 0.512165 | 6_2:-79773017 | Msa0930710:three_prime_UTR |
| CTACAAACAAAACAAAGACT+TGG | 0.513322 | 6_2:+79775493 | None:intergenic |
| GATGAGGATCAAACAACTGC+TGG | 0.515117 | 6_2:+79773291 | None:intergenic |
| GATGCTCTCATTCTTGGTCA+TGG | 0.526629 | 6_2:-79774015 | Msa0930710:CDS |
| GCGTGGAGTCGAGGGAGGGA+GGG | 0.527427 | 6_2:-79775542 | Msa0930710:five_prime_UTR |
| GTCATCTCTTGGTCCGCTGA+TGG | 0.528417 | 6_2:-79775235 | Msa0930710:CDS |
| GTTGAGTTGTCTGACGAAGC+TGG | 0.529603 | 6_2:+79775132 | None:intergenic |
| ACTCCCGGACAAGACGGGAC+TGG | 0.529668 | 6_2:+79773094 | None:intergenic |
| GGTAAATCAGGTACAAGAAA+CGG | 0.535891 | 6_2:+79773684 | None:intergenic |
| GAGATGACGGAATCGGTTGA+AGG | 0.536421 | 6_2:+79775250 | None:intergenic |
| TATAAGCTAGCAAAATACAG+AGG | 0.542362 | 6_2:-79773391 | Msa0930710:three_prime_UTR |
| ATACAACTCCCGGACAAGAC+GGG | 0.544409 | 6_2:+79773089 | None:intergenic |
| CAAGTAATTAATAGAAAACA+TGG | 0.545090 | 6_2:-79772931 | Msa0930710:three_prime_UTR |
| GAGTGAGAATTGATCAGCGT+TGG | 0.547894 | 6_2:+79775192 | None:intergenic |
| GTACCTGATTTACCGGATGA+CGG | 0.554758 | 6_2:-79773675 | Msa0930710:CDS |
| AGGTGAACTTATATGCTGAT+GGG | 0.555510 | 6_2:-79773475 | Msa0930710:three_prime_UTR |
| AACTGTTAGTGACATGGAGA+TGG | 0.556871 | 6_2:-79773577 | Msa0930710:CDS |
| ACAGACCAGTTTCTTCTGAT+GGG | 0.557728 | 6_2:-79773890 | Msa0930710:CDS |
| GTTTGACCAACTCCTGCGTG+AGG | 0.558206 | 6_2:+79774120 | None:intergenic |
| GGACCAAGAGATGACGGAAT+CGG | 0.563358 | 6_2:+79775243 | None:intergenic |
| GAGGTGAACTTATATGCTGA+TGG | 0.564123 | 6_2:-79773476 | Msa0930710:three_prime_UTR |
| TTTACCGGATGACGGTTCGT+GGG | 0.565563 | 6_2:-79773667 | Msa0930710:CDS |
| AGCAGCAACAGCGAGCGAGA+AGG | 0.566061 | 6_2:-79775329 | Msa0930710:CDS |
| TGGAGTCGAGGGAGGGAGGG+AGG | 0.566775 | 6_2:-79775539 | Msa0930710:five_prime_UTR |
| TCACAAGAAGCAGTAAATCA+TGG | 0.568437 | 6_2:-79774185 | Msa0930710:CDS |
| GGGGTATTGGATGGGCTACA+GGG | 0.571270 | 6_2:-79773453 | Msa0930710:three_prime_UTR |
| TGCTGATCTGCAGCAACATG+TGG | 0.573167 | 6_2:+79774245 | None:intergenic |
| GCTTAACAGTTGCACACACA+TGG | 0.574314 | 6_2:-79772974 | Msa0930710:three_prime_UTR |
| AACCTGAGGTTTCTACAGAT+GGG | 0.578276 | 6_2:-79773785 | Msa0930710:CDS |
| TTTGACCAACTCCTGCGTGA+GGG | 0.583918 | 6_2:+79774121 | None:intergenic |
| GAAAATTGATGCAGATCACT+GGG | 0.584009 | 6_2:-79774336 | Msa0930710:CDS |
| GCAAATGAAAACTTCATTAG+GGG | 0.585563 | 6_2:-79774308 | Msa0930710:CDS |
| GAAGGGTGGTTCTGGTTCGG+TGG | 0.586874 | 6_2:-79775311 | Msa0930710:CDS |
| GTTTAGATTGTAAGGAAGAG+CGG | 0.594692 | 6_2:-79773026 | Msa0930710:three_prime_UTR |
| TAATAAGCAACCAGAACCTG+AGG | 0.601561 | 6_2:-79773799 | Msa0930710:CDS |
| ATGGTCTGTAACTAGTACGA+TGG | 0.605796 | 6_2:-79773068 | Msa0930710:three_prime_UTR |
| GCTAGCAAAATACAGAGGGA+AGG | 0.612053 | 6_2:-79773386 | Msa0930710:three_prime_UTR |
| GCAGCTGAACCAAGAATCCA+GGG | 0.614903 | 6_2:+79773982 | None:intergenic |
| ATAAGCTAGCAAAATACAGA+GGG | 0.615276 | 6_2:-79773390 | Msa0930710:three_prime_UTR |
| GTTACAGACCATACAACTCC+CGG | 0.620652 | 6_2:+79773079 | None:intergenic |
| CATACAACTCCCGGACAAGA+CGG | 0.621357 | 6_2:+79773088 | None:intergenic |
| ATCAGCGGACCAAGAGATGA+CGG | 0.624409 | 6_2:+79775237 | None:intergenic |
| AAAACGCGTGGAGTCGAGGG+AGG | 0.624843 | 6_2:-79775547 | Msa0930710:five_prime_UTR |
| GGTGAACTTATATGCTGATG+GGG | 0.628619 | 6_2:-79773474 | Msa0930710:three_prime_UTR |
| TTATTAAAGGCAGGAGATCG+TGG | 0.635093 | 6_2:+79773816 | None:intergenic |
| CTCTGAAGCAGGGAATATGT+GGG | 0.641241 | 6_2:-79773931 | Msa0930710:CDS |
| GAGGATCAAACAACTGCTGG+AGG | 0.643619 | 6_2:+79773294 | None:intergenic |
| AAACGCGTGGAGTCGAGGGA+GGG | 0.644599 | 6_2:-79775546 | Msa0930710:five_prime_UTR |
| GTGAACTTATATGCTGATGG+GGG | 0.648302 | 6_2:-79773473 | Msa0930710:three_prime_UTR |
| ATTGGCGTTTCTCTGAAGCA+GGG | 0.648668 | 6_2:-79773941 | Msa0930710:CDS |
| GGAGCAAACTGTTAGTGACA+TGG | 0.649582 | 6_2:-79773583 | Msa0930710:CDS |
| GCAGGGAATATGTGGGACCA+AGG | 0.652641 | 6_2:-79773924 | Msa0930710:CDS |
| GCAACAGCGAGCGAGAAGGG+TGG | 0.652707 | 6_2:-79775325 | Msa0930710:CDS |
| ATGGAGAACACTCACGCATG+AGG | 0.654290 | 6_2:-79773495 | Msa0930710:exon |
| GAAACTATTGTTACCATCAG+CGG | 0.656676 | 6_2:+79775222 | None:intergenic |
| GCTTACACTGAATCCAGATG+AGG | 0.676787 | 6_2:+79773275 | None:intergenic |
| AGATACTGATCGTGAAAACG+AGG | 0.683103 | 6_2:-79773604 | Msa0930710:CDS |
| TGAACTTATATGCTGATGGG+GGG | 0.694606 | 6_2:-79773472 | Msa0930710:three_prime_UTR |
| GTGTGTGCAACTGTTAAGCG+TGG | 0.725030 | 6_2:+79772978 | None:intergenic |
| AATATTATAACTTCACCGCG+AGG | 0.739369 | 6_2:+79773353 | None:intergenic |
| GAAGGAAACAAATTTCCTCG+CGG | 0.747960 | 6_2:-79773368 | Msa0930710:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGTGTTTAAAATAATT+GGG | + | chr6_2:79773297-79773316 | None:intergenic | 10.0% |
| !!! | ATTATTGTGTTTAAAATAAT+TGG | + | chr6_2:79773298-79773317 | None:intergenic | 10.0% |
| !!! | TATTGTGTTTAAAATAATTG+GGG | + | chr6_2:79773296-79773315 | None:intergenic | 15.0% |
| !! | CATATGAATTAATAATTGAA+GGG | + | chr6_2:79773373-79773392 | None:intergenic | 15.0% |
| !! | ACATATGAATTAATAATTGA+AGG | + | chr6_2:79773374-79773393 | None:intergenic | 15.0% |
| !!! | ATTATATTATTAATGGGTAA+AGG | - | chr6_2:79773473-79773492 | Msa0930710:three_prime_UTR | 15.0% |
| !! | TAGATAAACAAAATTATTGT+AGG | + | chr6_2:79774010-79774029 | None:intergenic | 15.0% |
| !!! | TACAATAATTTTGTTTATCT+AGG | - | chr6_2:79774009-79774028 | Msa0930710:CDS | 15.0% |
| !!! | TACTTGTTTTTTATAAGTAT+AGG | + | chr6_2:79775509-79775528 | None:intergenic | 15.0% |
| !! | AATAATCAATTAACCTAAAG+AGG | + | chr6_2:79773087-79773106 | None:intergenic | 20.0% |
| !! | TTTAAACACAAACTGATATA+GGG | + | chr6_2:79773442-79773461 | None:intergenic | 20.0% |
| !! | ATTTAAACACAAACTGATAT+AGG | + | chr6_2:79773443-79773462 | None:intergenic | 20.0% |
| !! | TTATACCTACATATAAATCA+AGG | + | chr6_2:79773509-79773528 | None:intergenic | 20.0% |
| !!! | ATAAAATAGTCAAAGTGTTT+TGG | + | chr6_2:79773788-79773807 | None:intergenic | 20.0% |
| !! | CAAGTAATTAATAGAAAACA+TGG | - | chr6_2:79775523-79775542 | Msa0930710:five_prime_UTR | 20.0% |
| ! | TCGTAACATTTATTCAAGAA+AGG | + | chr6_2:79773171-79773190 | None:intergenic | 25.0% |
| ! | CTTGAATAAATGTTACGATA+TGG | - | chr6_2:79773173-79773192 | Msa0930710:intron | 25.0% |
| ! | TGTTTCCTTGATTTATATGT+AGG | - | chr6_2:79773501-79773520 | Msa0930710:CDS | 25.0% |
| ! | AAAATCCATTAGTAGTACTT+AGG | - | chr6_2:79773527-79773546 | Msa0930710:CDS | 25.0% |
| ! | AAATCCATTAGTAGTACTTA+GGG | - | chr6_2:79773528-79773547 | Msa0930710:CDS | 25.0% |
| ! | TATGGATAAACAAGTTAATC+AGG | + | chr6_2:79773873-79773892 | None:intergenic | 25.0% |
| ! | TTGCAAATGAAAACTTCATT+AGG | - | chr6_2:79774144-79774163 | Msa0930710:CDS | 25.0% |
| ! | TGCAAATGAAAACTTCATTA+GGG | - | chr6_2:79774145-79774164 | Msa0930710:CDS | 25.0% |
| !! | AGAAGTTGAGAATCTAAAAT+CGG | - | chr6_2:79774301-79774320 | Msa0930710:CDS | 25.0% |
| !!! | TCTTCAACATTTTTTAGGAT+AGG | + | chr6_2:79774833-79774852 | None:intergenic | 25.0% |
| !!! | CAGTATCTTCAACATTTTTT+AGG | + | chr6_2:79774838-79774857 | None:intergenic | 25.0% |
| ! | CCTAATATCTGAATACTAAT+CGG | - | chr6_2:79775307-79775326 | Msa0930710:CDS | 25.0% |
| ! | CTAATATCTGAATACTAATC+GGG | - | chr6_2:79775308-79775327 | Msa0930710:CDS | 25.0% |
| ! | CATATTACGTTTAGATTGTA+AGG | - | chr6_2:79775420-79775439 | Msa0930710:five_prime_UTR | 25.0% |
| CTACAAACAAAACAAAGACT+TGG | + | chr6_2:79772964-79772983 | None:intergenic | 30.0% | |
| ! | TCTATTTCTTCTTCCTCTTT+AGG | - | chr6_2:79773071-79773090 | Msa0930710:three_prime_UTR | 30.0% |
| AAACTGATATAGGGTTAATG+AGG | + | chr6_2:79773433-79773452 | None:intergenic | 30.0% | |
| !!! | TTACTTCTACGACACTTTTT+TGG | - | chr6_2:79773559-79773578 | Msa0930710:CDS | 30.0% |
| TGTAGTAAAGGTTTCTCAAA+AGG | + | chr6_2:79773953-79773972 | None:intergenic | 30.0% | |
| ACACTTTAAACAAATCGAGA+CGG | + | chr6_2:79774047-79774066 | None:intergenic | 30.0% | |
| TGATGACTGTTGAATTTATC+AGG | - | chr6_2:79774088-79774107 | Msa0930710:CDS | 30.0% | |
| GATGACTGTTGAATTTATCA+GGG | - | chr6_2:79774089-79774108 | Msa0930710:CDS | 30.0% | |
| GCAAATGAAAACTTCATTAG+GGG | - | chr6_2:79774146-79774165 | Msa0930710:CDS | 30.0% | |
| TTCACCCTAAGGAAAATAAT+TGG | - | chr6_2:79774495-79774514 | Msa0930710:intron | 30.0% | |
| ! | AACGCCAATTATTTTCCTTA+GGG | + | chr6_2:79774502-79774521 | None:intergenic | 30.0% |
| ! | AAACGCCAATTATTTTCCTT+AGG | + | chr6_2:79774503-79774522 | None:intergenic | 30.0% |
| ACGGAGAATGATTATCTAAT+GGG | + | chr6_2:79774754-79774773 | None:intergenic | 30.0% | |
| AACGGAGAATGATTATCTAA+TGG | + | chr6_2:79774755-79774774 | None:intergenic | 30.0% | |
| !!! | TGATTTTGAAGCGATGATTA+TGG | - | chr6_2:79774934-79774953 | Msa0930710:intron | 30.0% |
| !! | AAATCGATTTTCTCAGTTTG+AGG | + | chr6_2:79775035-79775054 | None:intergenic | 30.0% |
| TATAAGCTAGCAAAATACAG+AGG | - | chr6_2:79775063-79775082 | Msa0930710:intron | 30.0% | |
| ATAAGCTAGCAAAATACAGA+GGG | - | chr6_2:79775064-79775083 | Msa0930710:intron | 30.0% | |
| CAAATCAGCTAATCAAATTG+TGG | - | chr6_2:79775240-79775259 | Msa0930710:CDS | 30.0% | |
| CCGATTAGTATTCAGATATT+AGG | + | chr6_2:79775310-79775329 | None:intergenic | 30.0% | |
| GAAACTATTGTTACCATCAG+CGG | + | chr6_2:79773235-79773254 | None:intergenic | 35.0% | |
| TGATATAGGGTTAATGAGGT+CGG | + | chr6_2:79773429-79773448 | None:intergenic | 35.0% | |
| CAAACCCTAAGTACTACTAA+TGG | + | chr6_2:79773535-79773554 | None:intergenic | 35.0% | |
| AACAGTGGTCTGTTCAAATT+CGG | + | chr6_2:79773645-79773664 | None:intergenic | 35.0% | |
| !! | ACTATTTCTAGAAGCTATCC+TGG | + | chr6_2:79773753-79773772 | None:intergenic | 35.0% |
| TTTCAATTCAGCAGCATCAA+AGG | + | chr6_2:79773908-79773927 | None:intergenic | 35.0% | |
| GTTGAATTTATCAGGGTTTC+AGG | - | chr6_2:79774096-79774115 | Msa0930710:CDS | 35.0% | |
| GAAAATTGATGCAGATCACT+GGG | - | chr6_2:79774118-79774137 | Msa0930710:CDS | 35.0% | |
| TGCTGAAGAATATACGTAGA+AGG | - | chr6_2:79774180-79774199 | Msa0930710:CDS | 35.0% | |
| TGATTTACTGCTTCTTGTGA+TGG | + | chr6_2:79774269-79774288 | None:intergenic | 35.0% | |
| TCACAAGAAGCAGTAAATCA+TGG | - | chr6_2:79774269-79774288 | Msa0930710:CDS | 35.0% | |
| !!! | TTTAGTTTTTCAGCAACAGG+TGG | + | chr6_2:79774608-79774627 | None:intergenic | 35.0% |
| !!! | GGTTTTAGTTTTTCAGCAAC+AGG | + | chr6_2:79774611-79774630 | None:intergenic | 35.0% |
| ! | AGGTTCTGGTTGCTTATTAA+AGG | + | chr6_2:79774654-79774673 | None:intergenic | 35.0% |
| GGTAAATCAGGTACAAGAAA+CGG | + | chr6_2:79774773-79774792 | None:intergenic | 35.0% | |
| GTTTCTTGTACCTGATTTAC+CGG | - | chr6_2:79774772-79774791 | Msa0930710:intron | 35.0% | |
| !! | TCGTGGGAACAACTATTTTT+AGG | - | chr6_2:79774803-79774822 | Msa0930710:intron | 35.0% |
| TGAAGCGATGATTATGGAAA+TGG | - | chr6_2:79774940-79774959 | Msa0930710:intron | 35.0% | |
| AGGTGAACTTATATGCTGAT+GGG | - | chr6_2:79774979-79774998 | Msa0930710:intron | 35.0% | |
| !! | TTTTGCTAGCTTATAGAAGC+TGG | + | chr6_2:79775058-79775077 | None:intergenic | 35.0% |
| AATATTATAACTTCACCGCG+AGG | + | chr6_2:79775104-79775123 | None:intergenic | 35.0% | |
| ACAAATGATAAAGACAGAGC+AGG | + | chr6_2:79775208-79775227 | None:intergenic | 35.0% | |
| TCAAATTGTGGAGATGATTG+AGG | - | chr6_2:79775252-79775271 | Msa0930710:CDS | 35.0% | |
| !! | ACTAATCGGGATTTGCTTTT+TGG | - | chr6_2:79775321-79775340 | Msa0930710:CDS | 35.0% |
| !!! | TGCTTTTTGGCTTCTTGATA+TGG | - | chr6_2:79775334-79775353 | Msa0930710:CDS | 35.0% |
| GTTTAGATTGTAAGGAAGAG+CGG | - | chr6_2:79775428-79775447 | Msa0930710:five_prime_UTR | 35.0% | |
| CATTCACACATCTCATCTGT+TGG | - | chr6_2:79773009-79773028 | Msa0930710:three_prime_UTR | 40.0% | |
| TTAATGAGGTCGGTAATTGG+GGG | + | chr6_2:79773419-79773438 | None:intergenic | 40.0% | |
| GTTAATGAGGTCGGTAATTG+GGG | + | chr6_2:79773420-79773439 | None:intergenic | 40.0% | |
| GGTTAATGAGGTCGGTAATT+GGG | + | chr6_2:79773421-79773440 | None:intergenic | 40.0% | |
| CAAAGGATTACGGTTCTCTA+TGG | + | chr6_2:79773891-79773910 | None:intergenic | 40.0% | |
| TCAGCAGCATCAAAGGATTA+CGG | + | chr6_2:79773901-79773920 | None:intergenic | 40.0% | |
| GTTGCATGTTGCTGTAGTAA+AGG | + | chr6_2:79773965-79773984 | None:intergenic | 40.0% | |
| TGTAGGTTCTTCTACTGAGT+GGG | + | chr6_2:79773993-79774012 | None:intergenic | 40.0% | |
| TTGTAGGTTCTTCTACTGAG+TGG | + | chr6_2:79773994-79774013 | None:intergenic | 40.0% | |
| AATCGAGACGGTAAAAATGC+AGG | + | chr6_2:79774035-79774054 | None:intergenic | 40.0% | |
| GGAAAATTGATGCAGATCAC+TGG | - | chr6_2:79774117-79774136 | Msa0930710:CDS | 40.0% | |
| AAGCAGTAAATCATGGCCTT+TGG | - | chr6_2:79774276-79774295 | Msa0930710:CDS | 40.0% | |
| GATTCTCAACTTCTCTCCAA+AGG | + | chr6_2:79774295-79774314 | None:intergenic | 40.0% | |
| GCTTACTCTCAGAAGATTCA+AGG | + | chr6_2:79774370-79774389 | None:intergenic | 40.0% | |
| ! | AAGAAACTGGTCTGTCATCT+TGG | + | chr6_2:79774559-79774578 | None:intergenic | 40.0% |
| ACAGACCAGTTTCTTCTGAT+GGG | - | chr6_2:79774564-79774583 | Msa0930710:intron | 40.0% | |
| ATCATCCCATCAGAAGAAAC+TGG | + | chr6_2:79774572-79774591 | None:intergenic | 40.0% | |
| TTATTAAAGGCAGGAGATCG+TGG | + | chr6_2:79774641-79774660 | None:intergenic | 40.0% | |
| TCTGGTTGCTTATTAAAGGC+AGG | + | chr6_2:79774650-79774669 | None:intergenic | 40.0% | |
| TAATAAGCAACCAGAACCTG+AGG | - | chr6_2:79774655-79774674 | Msa0930710:intron | 40.0% | |
| AACCTGAGGTTTCTACAGAT+GGG | - | chr6_2:79774669-79774688 | Msa0930710:intron | 40.0% | |
| AGATACTGATCGTGAAAACG+AGG | - | chr6_2:79774850-79774869 | Msa0930710:intron | 40.0% | |
| AACTGTTAGTGACATGGAGA+TGG | - | chr6_2:79774877-79774896 | Msa0930710:intron | 40.0% | |
| GAGGTGAACTTATATGCTGA+TGG | - | chr6_2:79774978-79774997 | Msa0930710:intron | 40.0% | |
| GGTGAACTTATATGCTGATG+GGG | - | chr6_2:79774980-79774999 | Msa0930710:intron | 40.0% | |
| GTGAACTTATATGCTGATGG+GGG | - | chr6_2:79774981-79775000 | Msa0930710:intron | 40.0% | |
| TGAACTTATATGCTGATGGG+GGG | - | chr6_2:79774982-79775001 | Msa0930710:intron | 40.0% | |
| GAAGGAAACAAATTTCCTCG+CGG | - | chr6_2:79775086-79775105 | Msa0930710:intron | 40.0% | |
| ATGGTCTGTAACTAGTACGA+TGG | - | chr6_2:79775386-79775405 | Msa0930710:five_prime_UTR | 40.0% | |
| AAAAAAACGCGTGGAGTCGA+GGG | - | chr6_2:79772904-79772923 | Msa0930710:three_prime_UTR | 45.0% | |
| GAGTGAGAATTGATCAGCGT+TGG | + | chr6_2:79773265-79773284 | None:intergenic | 45.0% | |
| GGGTTAATGAGGTCGGTAAT+TGG | + | chr6_2:79773422-79773441 | None:intergenic | 45.0% | |
| AGTGTATCGCAGAACAACAG+TGG | + | chr6_2:79773660-79773679 | None:intergenic | 45.0% | |
| TGTTCAATCGCGGAAAATGG+CGG | + | chr6_2:79773729-79773748 | None:intergenic | 45.0% | |
| GGTTGTTCAATCGCGGAAAA+TGG | + | chr6_2:79773732-79773751 | None:intergenic | 45.0% | |
| ! | TTTTCCGCGATTGAACAACC+AGG | - | chr6_2:79773732-79773751 | Msa0930710:CDS | 45.0% |
| CTATCCTGGTTGTTCAATCG+CGG | + | chr6_2:79773739-79773758 | None:intergenic | 45.0% | |
| ! | TCATCGCGATTGTCTTTTGG+CGG | + | chr6_2:79774245-79774264 | None:intergenic | 45.0% |
| ! | GGTTCATCGCGATTGTCTTT+TGG | + | chr6_2:79774248-79774267 | None:intergenic | 45.0% |
| GATGCTTCTCCATTCCTTCA+AGG | + | chr6_2:79774412-79774431 | None:intergenic | 45.0% | |
| GATGCTCTCATTCTTGGTCA+TGG | - | chr6_2:79774439-79774458 | Msa0930710:intron | 45.0% | |
| !! | AATTGGCGTTTCTCTGAAGC+AGG | - | chr6_2:79774512-79774531 | Msa0930710:intron | 45.0% |
| !! | ATTGGCGTTTCTCTGAAGCA+GGG | - | chr6_2:79774513-79774532 | Msa0930710:intron | 45.0% |
| !! | TCTCTGAAGCAGGGAATATG+TGG | - | chr6_2:79774522-79774541 | Msa0930710:intron | 45.0% |
| !! | CTCTGAAGCAGGGAATATGT+GGG | - | chr6_2:79774523-79774542 | Msa0930710:intron | 45.0% |
| GTCTGTCATCTTGGTTACCT+TGG | + | chr6_2:79774550-79774569 | None:intergenic | 45.0% | |
| GACAGACCAGTTTCTTCTGA+TGG | - | chr6_2:79774563-79774582 | Msa0930710:intron | 45.0% | |
| TCTGTAGAAACCTCAGGTTC+TGG | + | chr6_2:79774668-79774687 | None:intergenic | 45.0% | |
| GAACCTGAGGTTTCTACAGA+TGG | - | chr6_2:79774668-79774687 | Msa0930710:intron | 45.0% | |
| AACCCATCTGTAGAAACCTC+AGG | + | chr6_2:79774674-79774693 | None:intergenic | 45.0% | |
| GTACCTGATTTACCGGATGA+CGG | - | chr6_2:79774779-79774798 | Msa0930710:intron | 45.0% | |
| GGAGCAAACTGTTAGTGACA+TGG | - | chr6_2:79774871-79774890 | Msa0930710:intron | 45.0% | |
| ! | TATATGCTGATGGGGGGTAT+TGG | - | chr6_2:79774988-79775007 | Msa0930710:intron | 45.0% |
| GCTAGCAAAATACAGAGGGA+AGG | - | chr6_2:79775068-79775087 | Msa0930710:intron | 45.0% | |
| AAACAACTGCTGGAGGAAGA+TGG | + | chr6_2:79775156-79775175 | None:intergenic | 45.0% | |
| GATGAGGATCAAACAACTGC+TGG | + | chr6_2:79775166-79775185 | None:intergenic | 45.0% | |
| GCAGTTGTTTGATCCTCATC+TGG | - | chr6_2:79775166-79775185 | Msa0930710:CDS | 45.0% | |
| GCTTACACTGAATCCAGATG+AGG | + | chr6_2:79775182-79775201 | None:intergenic | 45.0% | |
| ATGATAAAGACAGAGCAGGC+AGG | + | chr6_2:79775204-79775223 | None:intergenic | 45.0% | |
| GTTACAGACCATACAACTCC+CGG | + | chr6_2:79775378-79775397 | None:intergenic | 45.0% | |
| GCTTAACAGTTGCACACACA+TGG | - | chr6_2:79775480-79775499 | Msa0930710:five_prime_UTR | 45.0% | |
| !! | TTGATTATTAATAATAATAA+TGG | - | chr6_2:79773098-79773117 | Msa0930710:three_prime_UTR | 5.0% |
| !! | ATACTATATTATATTATTAA+TGG | - | chr6_2:79773466-79773485 | Msa0930710:three_prime_UTR | 5.0% |
| !! | TACTATATTATATTATTAAT+GGG | - | chr6_2:79773467-79773486 | Msa0930710:three_prime_UTR | 5.0% |
| GAAAAAAACGCGTGGAGTCG+AGG | - | chr6_2:79772903-79772922 | Msa0930710:three_prime_UTR | 50.0% | |
| !! | GAGATGACGGAATCGGTTGA+AGG | + | chr6_2:79773207-79773226 | None:intergenic | 50.0% |
| ! | CAACCGATTCCGTCATCTCT+TGG | - | chr6_2:79773208-79773227 | Msa0930710:intron | 50.0% |
| !! | GGACCAAGAGATGACGGAAT+CGG | + | chr6_2:79773214-79773233 | None:intergenic | 50.0% |
| ATCAGCGGACCAAGAGATGA+CGG | + | chr6_2:79773220-79773239 | None:intergenic | 50.0% | |
| ! | GTTGAGTTGTCTGACGAAGC+TGG | + | chr6_2:79773325-79773344 | None:intergenic | 50.0% |
| !! | TAAGCCCTTCTGAGACCGTT+TGG | - | chr6_2:79773608-79773627 | Msa0930710:CDS | 50.0% |
| !! | AAGCCCTTCTGAGACCGTTT+GGG | - | chr6_2:79773609-79773628 | Msa0930710:CDS | 50.0% |
| TCTCCCAAACGGTCTCAGAA+GGG | + | chr6_2:79773615-79773634 | None:intergenic | 50.0% | |
| TCGGCATAAGCTCTCCCAAA+CGG | + | chr6_2:79773626-79773645 | None:intergenic | 50.0% | |
| TGCTGATCTGCAGCAACATG+TGG | + | chr6_2:79774212-79774231 | None:intergenic | 50.0% | |
| ! | CGATTGTCTTTTGGCGGCAA+TGG | + | chr6_2:79774239-79774258 | None:intergenic | 50.0% |
| GGATAGAAAAACCCTCACGC+AGG | - | chr6_2:79774322-79774341 | Msa0930710:CDS | 50.0% | |
| AAAAACCCTCACGCAGGAGT+TGG | - | chr6_2:79774328-79774347 | Msa0930710:CDS | 50.0% | |
| TTTGACCAACTCCTGCGTGA+GGG | + | chr6_2:79774336-79774355 | None:intergenic | 50.0% | |
| CTACTGAGTGATCGCCTTGA+AGG | - | chr6_2:79774395-79774414 | Msa0930710:intron | 50.0% | |
| GAGTGATCGCCTTGAAGGAA+TGG | - | chr6_2:79774400-79774419 | Msa0930710:intron | 50.0% | |
| GCAGCAGATGCTCTCATTCT+TGG | - | chr6_2:79774433-79774452 | Msa0930710:intron | 50.0% | |
| GCAGCTGAACCAAGAATCCA+GGG | + | chr6_2:79774475-79774494 | None:intergenic | 50.0% | |
| AGCAGCTGAACCAAGAATCC+AGG | + | chr6_2:79774476-79774495 | None:intergenic | 50.0% | |
| GAACCGTCATCCGGTAAATC+AGG | + | chr6_2:79774785-79774804 | None:intergenic | 50.0% | |
| ! | ATTTACCGGATGACGGTTCG+TGG | - | chr6_2:79774786-79774805 | Msa0930710:intron | 50.0% |
| ! | TTTACCGGATGACGGTTCGT+GGG | - | chr6_2:79774787-79774806 | Msa0930710:intron | 50.0% |
| ATGGAGAACACTCACGCATG+AGG | - | chr6_2:79774959-79774978 | Msa0930710:intron | 50.0% | |
| !! | TTGGATGGGCTACAGGGATT+TGG | - | chr6_2:79775007-79775026 | Msa0930710:intron | 50.0% |
| GAGGATCAAACAACTGCTGG+AGG | + | chr6_2:79775163-79775182 | None:intergenic | 50.0% | |
| ATACAACTCCCGGACAAGAC+GGG | + | chr6_2:79775368-79775387 | None:intergenic | 50.0% | |
| CATACAACTCCCGGACAAGA+CGG | + | chr6_2:79775369-79775388 | None:intergenic | 50.0% | |
| GTAAGGAAGAGCGGTCTTGA+AGG | - | chr6_2:79775437-79775456 | Msa0930710:five_prime_UTR | 50.0% | |
| GTGTGTGCAACTGTTAAGCG+TGG | + | chr6_2:79775479-79775498 | None:intergenic | 50.0% | |
| !! | CGAGAAGGGTGGTTCTGGTT+CGG | - | chr6_2:79773140-79773159 | Msa0930710:three_prime_UTR | 55.0% |
| GTCATCTCTTGGTCCGCTGA+TGG | - | chr6_2:79773219-79773238 | Msa0930710:intron | 55.0% | |
| GAGGTCGGTAATTGGGGGAA+AGG | + | chr6_2:79773414-79773433 | None:intergenic | 55.0% | |
| CTCTCCCAAACGGTCTCAGA+AGG | + | chr6_2:79773616-79773635 | None:intergenic | 55.0% | |
| GTTTGACCAACTCCTGCGTG+AGG | + | chr6_2:79774337-79774356 | None:intergenic | 55.0% | |
| CGTGCAATGCCCTGGATTCT+TGG | - | chr6_2:79774463-79774482 | Msa0930710:intron | 55.0% | |
| GGTTCAGCTGCTTCACCCTA+AGG | - | chr6_2:79774484-79774503 | Msa0930710:intron | 55.0% | |
| GCAGGGAATATGTGGGACCA+AGG | - | chr6_2:79774530-79774549 | Msa0930710:intron | 55.0% | |
| GCAGGAGATCGTGGAACAAC+AGG | + | chr6_2:79774632-79774651 | None:intergenic | 55.0% | |
| TGTTCCCACGAACCGTCATC+CGG | + | chr6_2:79774794-79774813 | None:intergenic | 55.0% | |
| !! | TGCTGATGGGGGGTATTGGA+TGG | - | chr6_2:79774992-79775011 | Msa0930710:intron | 55.0% |
| !! | GCTGATGGGGGGTATTGGAT+GGG | - | chr6_2:79774993-79775012 | Msa0930710:intron | 55.0% |
| !! | GGGGTATTGGATGGGCTACA+GGG | - | chr6_2:79775001-79775020 | Msa0930710:intron | 55.0% |
| CGTCTTGTCCGGGAGTTGTA+TGG | - | chr6_2:79775367-79775386 | Msa0930710:five_prime_UTR | 55.0% | |
| AAAACGCGTGGAGTCGAGGG+AGG | - | chr6_2:79772907-79772926 | Msa0930710:three_prime_UTR | 60.0% | |
| AAACGCGTGGAGTCGAGGGA+GGG | - | chr6_2:79772908-79772927 | Msa0930710:three_prime_UTR | 60.0% | |
| AGCAGCAACAGCGAGCGAGA+AGG | - | chr6_2:79773125-79773144 | Msa0930710:three_prime_UTR | 60.0% | |
| GCAGCAACAGCGAGCGAGAA+GGG | - | chr6_2:79773126-79773145 | Msa0930710:three_prime_UTR | 60.0% | |
| !! | GAAGGGTGGTTCTGGTTCGG+TGG | - | chr6_2:79773143-79773162 | Msa0930710:three_prime_UTR | 60.0% |
| GTCATGGTCGTGCAATGCCC+TGG | - | chr6_2:79774455-79774474 | Msa0930710:intron | 60.0% | |
| !! | GGGGGTATTGGATGGGCTAC+AGG | - | chr6_2:79775000-79775019 | Msa0930710:intron | 60.0% |
| GTGTCCAGTCCCGTCTTGTC+CGG | - | chr6_2:79775356-79775375 | Msa0930710:exon | 60.0% | |
| TGTCCAGTCCCGTCTTGTCC+GGG | - | chr6_2:79775357-79775376 | Msa0930710:exon | 60.0% | |
| GCAACAGCGAGCGAGAAGGG+TGG | - | chr6_2:79773129-79773148 | Msa0930710:three_prime_UTR | 65.0% | |
| GCGAGCGAGAAGGGTGGTTC+TGG | - | chr6_2:79773135-79773154 | Msa0930710:three_prime_UTR | 65.0% | |
| ACTCCCGGACAAGACGGGAC+TGG | + | chr6_2:79775363-79775382 | None:intergenic | 65.0% | |
| GCGTGGAGTCGAGGGAGGGA+GGG | - | chr6_2:79772912-79772931 | Msa0930710:three_prime_UTR | 70.0% | |
| TGGAGTCGAGGGAGGGAGGG+AGG | - | chr6_2:79772915-79772934 | Msa0930710:three_prime_UTR | 70.0% | |
| CGCGTGGAGTCGAGGGAGGG+AGG | - | chr6_2:79772911-79772930 | Msa0930710:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 79772903 | 79775573 | 79772903 | ID=Msa0930710;Name=Msa0930710 |
| chr6_2 | mRNA | 79772903 | 79775573 | 79772903 | ID=Msa0930710-mRNA-1;Parent=Msa0930710;Name=Msa0930710-mRNA-1;_AED=0.03;_eAED=0.03;_QI=214|1|1|1|0.5|0.33|3|488|367 |
| chr6_2 | exon | 79772903 | 79773174 | 79772903 | ID=Msa0930710-mRNA-1:exon:13824;Parent=Msa0930710-mRNA-1 |
| chr6_2 | exon | 79773281 | 79774366 | 79773281 | ID=Msa0930710-mRNA-1:exon:13823;Parent=Msa0930710-mRNA-1 |
| chr6_2 | exon | 79775126 | 79775573 | 79775126 | ID=Msa0930710-mRNA-1:exon:13822;Parent=Msa0930710-mRNA-1 |
| chr6_2 | five_prime_UTR | 79775360 | 79775573 | 79775360 | ID=Msa0930710-mRNA-1:five_prime_utr;Parent=Msa0930710-mRNA-1 |
| chr6_2 | CDS | 79775126 | 79775359 | 79775126 | ID=Msa0930710-mRNA-1:cds;Parent=Msa0930710-mRNA-1 |
| chr6_2 | CDS | 79773497 | 79774366 | 79773497 | ID=Msa0930710-mRNA-1:cds;Parent=Msa0930710-mRNA-1 |
| chr6_2 | three_prime_UTR | 79773281 | 79773496 | 79773281 | ID=Msa0930710-mRNA-1:three_prime_utr;Parent=Msa0930710-mRNA-1 |
| chr6_2 | three_prime_UTR | 79772903 | 79773174 | 79772903 | ID=Msa0930710-mRNA-1:three_prime_utr;Parent=Msa0930710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
