Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576750 | XP_024629287.1 | 98.383 | 371 | 4 | 1 | 1 | 369 | 1 | 371 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576750 | sp|Q9S7U5|HSFA8_ARATH | 43.978 | 357 | 159 | 6 | 18 | 358 | 17 | 348 | 6.52e-89 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576750 | G7LBG8 | 98.383 | 371 | 4 | 1 | 1 | 369 | 1 | 371 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0576750 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001870 | Msa0576750 | 0.886551 | 3.100696e-72 | -8.615850e-47 |
| Msa0071480 | Msa0576750 | 0.800550 | 1.367502e-48 | -8.615850e-47 |
| Msa0119440 | Msa0576750 | 0.827306 | 1.682889e-54 | -8.615850e-47 |
| Msa0194010 | Msa0576750 | 0.844344 | 8.014335e-59 | -8.615850e-47 |
| Msa0235880 | Msa0576750 | 0.844834 | 5.915279e-59 | -8.615850e-47 |
| Msa0364790 | Msa0576750 | 0.801312 | 9.553066e-49 | -8.615850e-47 |
| Msa0245540 | Msa0576750 | 0.807434 | 5.064312e-50 | -8.615850e-47 |
| Msa0576750 | Msa0764920 | 0.800168 | 1.635433e-48 | -8.615850e-47 |
| Msa0576750 | Msa0930710 | 0.877025 | 8.743507e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576750 | MtrunA17_Chr8g0392001 | 98.383 | 371 | 4 | 1 | 1 | 369 | 1 | 371 | 0.0 | 752 |
| Msa0576750 | MtrunA17_Chr5g0410881 | 46.125 | 271 | 128 | 6 | 20 | 274 | 32 | 300 | 3.09e-67 | 220 |
| Msa0576750 | MtrunA17_Chr4g0039891 | 42.238 | 277 | 152 | 3 | 11 | 280 | 3 | 278 | 1.26e-66 | 218 |
| Msa0576750 | MtrunA17_Chr1g0204741 | 47.297 | 222 | 92 | 5 | 11 | 217 | 16 | 227 | 4.48e-56 | 186 |
| Msa0576750 | MtrunA17_Chr7g0260331 | 48.454 | 194 | 96 | 2 | 20 | 213 | 49 | 238 | 1.49e-53 | 181 |
| Msa0576750 | MtrunA17_Chr3g0135831 | 45.876 | 194 | 98 | 2 | 20 | 213 | 46 | 232 | 5.40e-50 | 172 |
| Msa0576750 | MtrunA17_Chr6g0467041 | 47.030 | 202 | 94 | 6 | 11 | 212 | 13 | 201 | 2.72e-49 | 169 |
| Msa0576750 | MtrunA17_Chr8g0379701 | 45.000 | 200 | 99 | 3 | 12 | 209 | 4 | 194 | 8.14e-49 | 169 |
| Msa0576750 | MtrunA17_Chr1g0185131 | 45.699 | 186 | 83 | 3 | 20 | 205 | 32 | 199 | 4.81e-47 | 163 |
| Msa0576750 | MtrunA17_Chr2g0284481 | 45.226 | 199 | 97 | 3 | 9 | 203 | 4 | 194 | 2.01e-46 | 162 |
| Msa0576750 | MtrunA17_Chr4g0071051 | 46.597 | 191 | 88 | 3 | 20 | 210 | 101 | 277 | 1.52e-45 | 161 |
| Msa0576750 | MtrunA17_Chr6g0485571 | 46.193 | 197 | 95 | 4 | 18 | 214 | 9 | 194 | 1.74e-45 | 159 |
| Msa0576750 | MtrunA17_Chr8g0378061 | 47.917 | 192 | 87 | 6 | 21 | 212 | 23 | 201 | 7.04e-45 | 160 |
| Msa0576750 | MtrunA17_Chr2g0330821 | 43.415 | 205 | 105 | 4 | 1 | 205 | 60 | 253 | 1.82e-44 | 157 |
| Msa0576750 | MtrunA17_Chr5g0402291 | 42.373 | 177 | 74 | 2 | 19 | 168 | 8 | 183 | 8.24e-34 | 126 |
| Msa0576750 | MtrunA17_Chr5g0441531 | 60.417 | 96 | 37 | 1 | 19 | 114 | 24 | 118 | 2.09e-33 | 124 |
| Msa0576750 | MtrunA17_Chr3g0134031 | 62.766 | 94 | 34 | 1 | 19 | 112 | 23 | 115 | 2.28e-33 | 127 |
| Msa0576750 | MtrunA17_Chr5g0397881 | 59.574 | 94 | 37 | 1 | 19 | 112 | 23 | 115 | 3.87e-33 | 126 |
| Msa0576750 | MtrunA17_Chr8g0375041 | 43.750 | 160 | 81 | 4 | 17 | 168 | 6 | 164 | 7.70e-33 | 123 |
| Msa0576750 | MtrunA17_Chr6g0472421 | 60.638 | 94 | 36 | 1 | 19 | 112 | 32 | 124 | 3.61e-32 | 123 |
| Msa0576750 | MtrunA17_Chr1g0203601 | 52.294 | 109 | 51 | 1 | 4 | 112 | 2 | 109 | 3.34e-31 | 120 |
| Msa0576750 | MtrunA17_Chr7g0257331 | 49.123 | 114 | 54 | 2 | 2 | 112 | 1 | 113 | 8.15e-31 | 117 |
| Msa0576750 | MtrunA17_Chr4g0047421 | 40.645 | 155 | 82 | 5 | 19 | 164 | 32 | 185 | 1.45e-26 | 105 |
| Msa0576750 | MtrunA17_Chr1g0179311 | 35.928 | 167 | 98 | 3 | 81 | 246 | 14 | 172 | 4.18e-21 | 93.6 |
| Msa0576750 | MtrunA17_Chr1g0179321 | 57.143 | 63 | 26 | 1 | 18 | 80 | 47 | 108 | 1.16e-17 | 77.8 |
| Msa0576750 | MtrunA17_Chr4g0023771 | 55.224 | 67 | 29 | 1 | 12 | 78 | 7 | 72 | 3.44e-16 | 73.9 |
| Msa0576750 | MtrunA17_Chr2g0330841 | 36.719 | 128 | 71 | 3 | 81 | 208 | 41 | 158 | 1.33e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576750 | AT1G67970.1 | 43.978 | 357 | 159 | 6 | 18 | 358 | 17 | 348 | 6.62e-90 | 275 |
| Msa0576750 | AT1G32330.1 | 46.400 | 250 | 122 | 4 | 15 | 253 | 32 | 280 | 2.71e-63 | 210 |
| Msa0576750 | AT1G32330.2 | 46.400 | 250 | 122 | 4 | 15 | 253 | 32 | 280 | 3.09e-63 | 209 |
| Msa0576750 | AT5G16820.1 | 46.281 | 242 | 120 | 4 | 17 | 250 | 24 | 263 | 8.65e-60 | 201 |
| Msa0576750 | AT5G16820.2 | 46.281 | 242 | 120 | 4 | 17 | 250 | 24 | 263 | 8.65e-60 | 201 |
| Msa0576750 | AT4G17750.1 | 46.748 | 246 | 111 | 5 | 20 | 246 | 52 | 296 | 2.28e-59 | 200 |
| Msa0576750 | AT2G26150.1 | 49.206 | 189 | 89 | 2 | 20 | 208 | 44 | 225 | 1.07e-55 | 186 |
| Msa0576750 | AT2G26150.4 | 49.206 | 189 | 89 | 2 | 20 | 208 | 44 | 225 | 1.07e-55 | 186 |
| Msa0576750 | AT3G22830.1 | 48.768 | 203 | 102 | 2 | 20 | 221 | 61 | 262 | 1.13e-55 | 187 |
| Msa0576750 | AT3G02990.1 | 50.000 | 206 | 99 | 3 | 17 | 221 | 20 | 222 | 4.42e-55 | 188 |
| Msa0576750 | AT3G51910.1 | 43.814 | 194 | 87 | 4 | 20 | 213 | 29 | 200 | 7.98e-50 | 169 |
| Msa0576750 | AT5G03720.2 | 43.455 | 191 | 99 | 3 | 18 | 208 | 53 | 234 | 3.83e-47 | 166 |
| Msa0576750 | AT5G03720.1 | 43.455 | 191 | 99 | 3 | 18 | 208 | 53 | 234 | 3.83e-47 | 166 |
| Msa0576750 | AT5G43840.1 | 44.211 | 190 | 85 | 2 | 19 | 208 | 18 | 186 | 2.33e-46 | 160 |
| Msa0576750 | AT3G24520.1 | 43.939 | 198 | 81 | 3 | 18 | 215 | 15 | 182 | 3.41e-46 | 160 |
| Msa0576750 | AT4G13980.1 | 45.405 | 185 | 90 | 4 | 21 | 205 | 24 | 197 | 3.25e-44 | 159 |
| Msa0576750 | AT5G45710.3 | 41.706 | 211 | 108 | 3 | 14 | 220 | 7 | 206 | 3.86e-43 | 153 |
| Msa0576750 | AT5G45710.1 | 41.706 | 211 | 108 | 3 | 14 | 220 | 7 | 206 | 3.86e-43 | 153 |
| Msa0576750 | AT3G63350.1 | 40.284 | 211 | 111 | 4 | 19 | 229 | 27 | 222 | 8.35e-43 | 150 |
| Msa0576750 | AT5G54070.1 | 40.404 | 198 | 102 | 2 | 16 | 213 | 67 | 248 | 1.51e-42 | 151 |
| Msa0576750 | AT4G18880.1 | 45.729 | 199 | 98 | 4 | 12 | 208 | 7 | 197 | 2.57e-40 | 147 |
| Msa0576750 | AT1G46264.1 | 55.752 | 113 | 49 | 1 | 12 | 124 | 26 | 137 | 1.25e-36 | 136 |
| Msa0576750 | AT4G11660.1 | 59.574 | 94 | 37 | 1 | 19 | 112 | 58 | 150 | 5.01e-32 | 124 |
| Msa0576750 | AT4G36990.1 | 57.447 | 94 | 39 | 1 | 19 | 112 | 13 | 105 | 3.39e-31 | 120 |
| Msa0576750 | AT5G62020.1 | 58.511 | 94 | 38 | 1 | 19 | 112 | 22 | 114 | 5.32e-31 | 120 |
| Msa0576750 | AT2G41690.1 | 56.250 | 96 | 41 | 1 | 20 | 115 | 40 | 134 | 6.47e-31 | 118 |
| Msa0576750 | AT2G26150.3 | 42.308 | 130 | 69 | 1 | 79 | 208 | 47 | 170 | 4.57e-23 | 98.2 |
| Msa0576750 | AT2G26150.2 | 42.308 | 130 | 69 | 1 | 79 | 208 | 47 | 170 | 4.57e-23 | 98.2 |
| Msa0576750 | AT4G18870.1 | 52.174 | 92 | 42 | 2 | 17 | 108 | 10 | 99 | 2.76e-20 | 90.1 |
| Msa0576750 | AT4G18870.1 | 42.276 | 123 | 61 | 3 | 17 | 137 | 143 | 257 | 3.74e-20 | 90.1 |
| Msa0576750 | AT4G19630.1 | 36.842 | 95 | 56 | 2 | 17 | 108 | 8 | 101 | 1.34e-12 | 64.7 |
| Msa0576750 | AT1G77570.1 | 40.659 | 91 | 50 | 3 | 21 | 108 | 27 | 116 | 1.08e-11 | 62.8 |
Find 129 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTGTGTTTGAAATAAT+TGG | 0.094053 | 4_1:-80828250 | None:intergenic |
| GTTGAATTTATCAGGGTTTC+AGG | 0.157083 | 4_1:+80829102 | Msa0576750:intron |
| TCTATTCCTTCTTCCTCTTT+AGG | 0.184934 | 4_1:+80828018 | Msa0576750:five_prime_UTR |
| AGGTTCTGGTTGCTTATTAA+AGG | 0.234573 | 4_1:-80829657 | None:intergenic |
| CCGATTAGTATTCAGATATT+AGG | 0.248792 | 4_1:-80830313 | None:intergenic |
| TTGCAAATGAAAACTTCATT+AGG | 0.259058 | 4_1:+80829150 | Msa0576750:CDS |
| GGTTCATCGCGATTGTCTTT+TGG | 0.270022 | 4_1:-80829251 | None:intergenic |
| TGCAAATGAAAACTTCATTA+GGG | 0.270385 | 4_1:+80829151 | Msa0576750:CDS |
| ACTAATCGGGATTTGCCTTT+TGG | 0.279805 | 4_1:+80830327 | Msa0576750:three_prime_UTR |
| GAGAAGGGTGGTTCTGGTTC+TGG | 0.286157 | 4_1:+80828090 | Msa0576750:CDS |
| TTGGATGGGCTACAGGGATT+TGG | 0.290821 | 4_1:+80830013 | Msa0576750:three_prime_UTR |
| CTTGAATAAATGTTACGATA+TGG | 0.302015 | 4_1:+80828128 | Msa0576750:CDS |
| CGTGCAATGCCCTGGATTCT+TGG | 0.305963 | 4_1:+80829469 | Msa0576750:CDS |
| TTATTGTGTTTGAAATAATT+GGG | 0.306935 | 4_1:-80828249 | None:intergenic |
| GCAGCAGATGCTCTCATTCT+TGG | 0.308364 | 4_1:+80829439 | Msa0576750:CDS |
| GATTATTAATAATAATATAA+TGG | 0.324201 | 4_1:+80828047 | Msa0576750:exon |
| CCTAATATCTGAATACTAAT+CGG | 0.328535 | 4_1:+80830313 | Msa0576750:three_prime_UTR |
| TCGGCTTGTGCAAAATAATA+TGG | 0.334891 | 4_1:-80830560 | None:intergenic |
| CATATTACGTTTAGATTGTA+AGG | 0.336425 | 4_1:+80830426 | Msa0576750:three_prime_UTR |
| TTCACCCTAAGGAAAATAAT+TGG | 0.343688 | 4_1:+80829501 | Msa0576750:CDS |
| GTTTCTTGTACCTGATTTAC+CGG | 0.350562 | 4_1:+80829778 | Msa0576750:CDS |
| AACGGAGAATGATTATCTAA+TGG | 0.359885 | 4_1:-80829758 | None:intergenic |
| GCGAGCGAGAAGGGTGGTTC+TGG | 0.371236 | 4_1:+80828084 | Msa0576750:CDS |
| TGAAGCGATGATTATGGAAA+TGG | 0.375364 | 4_1:+80829946 | Msa0576750:CDS |
| TGGAGTCGAGGGAGGGAGGG+AGG | 0.377893 | 4_1:+80827890 | Msa0576750:five_prime_UTR |
| GCAGTTGTTTGATCCTCATC+TGG | 0.384929 | 4_1:+80830172 | Msa0576750:three_prime_UTR |
| GTCGAGGGAGGGAGGGAGGG+AGG | 0.398588 | 4_1:+80827894 | Msa0576750:five_prime_UTR |
| CAACCGATTCCATCATCTCT+TGG | 0.401097 | 4_1:+80828163 | Msa0576750:CDS |
| CTACTGAGTGATCGCCTTGA+AGG | 0.403981 | 4_1:+80829401 | Msa0576750:CDS |
| GATGCTTCTCCATTCCTTCA+AGG | 0.410224 | 4_1:-80829415 | None:intergenic |
| GTGTCCAGTCCCGTCTCGTC+CGG | 0.415288 | 4_1:+80830362 | Msa0576750:three_prime_UTR |
| TGATTTACTGCTTCTTGTGA+TGG | 0.416635 | 4_1:-80829272 | None:intergenic |
| GGAAAATTGATGCAGATCAC+TGG | 0.420160 | 4_1:+80829123 | Msa0576750:CDS |
| TGCTGAAGAATATACGTAGA+AGG | 0.420862 | 4_1:+80829186 | Msa0576750:CDS |
| GTCTGTCATCTTGGTTACCT+TGG | 0.422781 | 4_1:-80829553 | None:intergenic |
| GGGTGGTTCTGGTTCTGGTT+CGG | 0.424072 | 4_1:+80828095 | Msa0576750:CDS |
| GAACCGTCATCCGGTAAATC+AGG | 0.426775 | 4_1:-80829788 | None:intergenic |
| ACGGAGAATGATTATCTAAT+GGG | 0.429612 | 4_1:-80829757 | None:intergenic |
| GCAGGAGATCGTGGAACAAC+AGG | 0.434299 | 4_1:-80829635 | None:intergenic |
| TCTGTAGAAACCTCAGGTTC+TGG | 0.439677 | 4_1:-80829671 | None:intergenic |
| AAGCAGTAAATCATGGCCTT+TGG | 0.439818 | 4_1:+80829282 | Msa0576750:CDS |
| CATTCACTCATCTCATCTGT+TGG | 0.442669 | 4_1:+80827983 | Msa0576750:five_prime_UTR |
| ATCATCCCATCAGAAGAAAC+TGG | 0.445617 | 4_1:-80829575 | None:intergenic |
| AATAATCAATTAACCTAAAG+AGG | 0.447384 | 4_1:-80828031 | None:intergenic |
| AAGAAACTGGTCTGTCATCT+TGG | 0.448044 | 4_1:-80829562 | None:intergenic |
| AGAAGTTGAGAATCTAAAAT+CGG | 0.450572 | 4_1:+80829307 | Msa0576750:CDS |
| CGTCTCGTCCGGGAGTTGTA+TGG | 0.460009 | 4_1:+80830373 | Msa0576750:three_prime_UTR |
| GAACCTGAGGTTTCTACAGA+TGG | 0.463364 | 4_1:+80829674 | Msa0576750:CDS |
| AATTGGCGTTTCTCTGAAGC+AGG | 0.464691 | 4_1:+80829518 | Msa0576750:CDS |
| CTAATATCTGAATACTAATC+GGG | 0.466166 | 4_1:+80830314 | Msa0576750:three_prime_UTR |
| GCAGCAACAGCGAGCGAGAA+GGG | 0.473861 | 4_1:+80828075 | Msa0576750:CDS |
| AACCCATCTGTAGAAACCTC+AGG | 0.474952 | 4_1:-80829677 | None:intergenic |
| TGTTCCCACGAACCGTCATC+CGG | 0.475845 | 4_1:-80829797 | None:intergenic |
| GGTTCAGCTGCTTCACCCTA+AGG | 0.476383 | 4_1:+80829490 | Msa0576750:CDS |
| TCGTAACATTTATTCAAGAA+AGG | 0.477793 | 4_1:-80828123 | None:intergenic |
| GCTTACTCTCAGAAGATTCA+AGG | 0.482301 | 4_1:-80829373 | None:intergenic |
| AGCAGCTGAACCAAGAATCC+AGG | 0.483387 | 4_1:-80829479 | None:intergenic |
| ATTTACCGGATGACGGTTCG+TGG | 0.488372 | 4_1:+80829792 | Msa0576750:CDS |
| CACCATATCAAGAAGCCAAA+AGG | 0.496409 | 4_1:-80830342 | None:intergenic |
| GAGTGATCGCCTTGAAGGAA+TGG | 0.496645 | 4_1:+80829406 | Msa0576750:CDS |
| CGCGTGGAGTCGAGGGAGGG+AGG | 0.497153 | 4_1:+80827886 | Msa0576750:five_prime_UTR |
| TCTGGTTGCTTATTAAAGGC+AGG | 0.497515 | 4_1:-80829653 | None:intergenic |
| AAACAACTGCTGGAGGAAGA+TGG | 0.498422 | 4_1:-80830159 | None:intergenic |
| GTCATGGTCGTGCAATGCCC+TGG | 0.501216 | 4_1:+80829461 | Msa0576750:CDS |
| GGAGTCGAGGGAGGGAGGGA+GGG | 0.502685 | 4_1:+80827891 | Msa0576750:five_prime_UTR |
| GACAGACCAGTTTCTTCTGA+TGG | 0.504911 | 4_1:+80829569 | Msa0576750:CDS |
| TCTCTGAAGCAGGGAATATG+TGG | 0.508698 | 4_1:+80829528 | Msa0576750:CDS |
| ACTCCCGGACGAGACGGGAC+TGG | 0.510202 | 4_1:-80830366 | None:intergenic |
| GATTCTCAACTTCTCTCCAA+AGG | 0.510423 | 4_1:-80829298 | None:intergenic |
| TATTGTGTTTGAAATAATTG+GGG | 0.510469 | 4_1:-80828248 | None:intergenic |
| GTAAGGAAGAGCGGTCTTGA+AGG | 0.512165 | 4_1:+80830443 | Msa0576750:three_prime_UTR |
| GATGAGGATCAAACAACTGC+TGG | 0.515117 | 4_1:-80830169 | None:intergenic |
| TGTCCAGTCCCGTCTCGTCC+GGG | 0.523356 | 4_1:+80830363 | Msa0576750:three_prime_UTR |
| GATGCTCTCATTCTTGGTCA+TGG | 0.526629 | 4_1:+80829445 | Msa0576750:CDS |
| GCGTGGAGTCGAGGGAGGGA+GGG | 0.527427 | 4_1:+80827887 | Msa0576750:five_prime_UTR |
| GAGATGATGGAATCGGTTGA+AGG | 0.531686 | 4_1:-80828159 | None:intergenic |
| ATCATCTCTTGGTCCGCTGA+TGG | 0.533246 | 4_1:+80828174 | Msa0576750:CDS |
| ATCAGCGGACCAAGAGATGA+TGG | 0.535757 | 4_1:-80828172 | None:intergenic |
| GGTAAATCAGGTACAAGAAA+CGG | 0.535891 | 4_1:-80829776 | None:intergenic |
| TATAAGCTAGCAAAATACAG+AGG | 0.542362 | 4_1:+80830069 | Msa0576750:three_prime_UTR |
| ATACAACTCCCGGACGAGAC+GGG | 0.542861 | 4_1:-80830371 | None:intergenic |
| TGGTTCTGGTTCTGGTTCGG+TGG | 0.544426 | 4_1:+80828098 | Msa0576750:CDS |
| CAAGTAATTAATAGAAAACA+TGG | 0.545090 | 4_1:+80830529 | Msa0576750:three_prime_UTR |
| GAGTGAGAATTGATCAGCGT+TGG | 0.547894 | 4_1:-80828217 | None:intergenic |
| GAGTTGAACTTATATGCTGA+TGG | 0.551742 | 4_1:+80829984 | Msa0576750:exon |
| GTACCTGATTTACCGGATGA+CGG | 0.554758 | 4_1:+80829785 | Msa0576750:CDS |
| AACTGTTAGTGACATGGAGA+TGG | 0.556871 | 4_1:+80829883 | Msa0576750:CDS |
| ACAGACCAGTTTCTTCTGAT+GGG | 0.557728 | 4_1:+80829570 | Msa0576750:CDS |
| GTTTGACCAACTCCTGCGTG+AGG | 0.558206 | 4_1:-80829340 | None:intergenic |
| GGACCAAGAGATGATGGAAT+CGG | 0.561010 | 4_1:-80828166 | None:intergenic |
| AATTAACCTAAAGAGGAAGA+AGG | 0.562553 | 4_1:-80828024 | None:intergenic |
| TTTACCGGATGACGGTTCGT+GGG | 0.565563 | 4_1:+80829793 | Msa0576750:CDS |
| AGCAGCAACAGCGAGCGAGA+AGG | 0.566061 | 4_1:+80828074 | Msa0576750:CDS |
| TCACAAGAAGCAGTAAATCA+TGG | 0.568437 | 4_1:+80829275 | Msa0576750:CDS |
| GGGGTATTGGATGGGCTACA+GGG | 0.571270 | 4_1:+80830007 | Msa0576750:three_prime_UTR |
| TGCTGATCTGCAGCAACATG+TGG | 0.573167 | 4_1:-80829215 | None:intergenic |
| ACTAACTACAAACAAAGACT+TGG | 0.573283 | 4_1:-80827940 | None:intergenic |
| GCTTAACAGTTGCACACACA+TGG | 0.574314 | 4_1:+80830486 | Msa0576750:three_prime_UTR |
| AACCTGAGGTTTCTACAGAT+GGG | 0.578276 | 4_1:+80829675 | Msa0576750:CDS |
| TTTGACCAACTCCTGCGTGA+GGG | 0.583918 | 4_1:-80829339 | None:intergenic |
| GAAAATTGATGCAGATCACT+GGG | 0.584009 | 4_1:+80829124 | Msa0576750:CDS |
| GCAAATGAAAACTTCATTAG+GGG | 0.585563 | 4_1:+80829152 | Msa0576750:CDS |
| GTTTAGATTGTAAGGAAGAG+CGG | 0.594692 | 4_1:+80830434 | Msa0576750:three_prime_UTR |
| CATACAACTCCCGGACGAGA+CGG | 0.594807 | 4_1:-80830372 | None:intergenic |
| TAATAAGCAACCAGAACCTG+AGG | 0.601561 | 4_1:+80829661 | Msa0576750:CDS |
| AGTTGAACTTATATGCTGAT+GGG | 0.602411 | 4_1:+80829985 | Msa0576750:exon |
| ATGGTCTGTAACTAGTACGA+TGG | 0.605796 | 4_1:+80830392 | Msa0576750:three_prime_UTR |
| GCTAGCAAAATACAGAGGGA+AGG | 0.612053 | 4_1:+80830074 | Msa0576750:three_prime_UTR |
| GCAGCTGAACCAAGAATCCA+GGG | 0.614903 | 4_1:-80829478 | None:intergenic |
| ATAAGCTAGCAAAATACAGA+GGG | 0.615276 | 4_1:+80830070 | Msa0576750:three_prime_UTR |
| GTTACAGACCATACAACTCC+CGG | 0.620652 | 4_1:-80830381 | None:intergenic |
| AAAACGCGTGGAGTCGAGGG+AGG | 0.624843 | 4_1:+80827882 | Msa0576750:five_prime_UTR |
| TTATTAAAGGCAGGAGATCG+TGG | 0.635093 | 4_1:-80829644 | None:intergenic |
| CTCTGAAGCAGGGAATATGT+GGG | 0.641241 | 4_1:+80829529 | Msa0576750:CDS |
| GAGGATCAAACAACTGCTGG+AGG | 0.643619 | 4_1:-80830166 | None:intergenic |
| AAACGCGTGGAGTCGAGGGA+GGG | 0.644599 | 4_1:+80827883 | Msa0576750:five_prime_UTR |
| ATTGGCGTTTCTCTGAAGCA+GGG | 0.648668 | 4_1:+80829519 | Msa0576750:CDS |
| GGAGCAAACTGTTAGTGACA+TGG | 0.649582 | 4_1:+80829877 | Msa0576750:CDS |
| GCAGGGAATATGTGGGACCA+AGG | 0.652641 | 4_1:+80829536 | Msa0576750:CDS |
| GCAACAGCGAGCGAGAAGGG+TGG | 0.652707 | 4_1:+80828078 | Msa0576750:CDS |
| GAAACTATTGTTACCATCAG+CGG | 0.656676 | 4_1:-80828187 | None:intergenic |
| GTTGAACTTATATGCTGATG+GGG | 0.667047 | 4_1:+80829986 | Msa0576750:three_prime_UTR |
| GCTTACACTGAATCCAGATG+AGG | 0.676787 | 4_1:-80830185 | None:intergenic |
| AGATACTGATCGTGAAAACG+AGG | 0.683103 | 4_1:+80829856 | Msa0576750:CDS |
| TGAACTTATATGCTGATGGG+GGG | 0.686271 | 4_1:+80829988 | Msa0576750:three_prime_UTR |
| TTGAACTTATATGCTGATGG+GGG | 0.686731 | 4_1:+80829987 | Msa0576750:three_prime_UTR |
| GTGTGTGCAACTGTTAAGCG+TGG | 0.725030 | 4_1:-80830482 | None:intergenic |
| AATATTATAACTTCACCGCG+AGG | 0.739369 | 4_1:-80830107 | None:intergenic |
| GAAGGAAACAAATTTCCTCG+CGG | 0.747960 | 4_1:+80830092 | Msa0576750:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGTGTTTGAAATAATT+GGG | - | chr4_1:80828252-80828271 | None:intergenic | 15.0% |
| !!! | ATTATTGTGTTTGAAATAAT+TGG | - | chr4_1:80828253-80828272 | None:intergenic | 15.0% |
| !! | AATCAGAATTAATAATTGAA+GGG | - | chr4_1:80828328-80828347 | None:intergenic | 15.0% |
| !! | AAATCAGAATTAATAATTGA+AGG | - | chr4_1:80828329-80828348 | None:intergenic | 15.0% |
| !! | TATTTAAACAAACTGATATA+GGG | - | chr4_1:80828401-80828420 | None:intergenic | 15.0% |
| !!! | ATTATATTATTAATGGGTAA+AGG | + | chr4_1:80828430-80828449 | Msa0576750:intron | 15.0% |
| !! | TAGATAAACAAAATTATTGT+AGG | - | chr4_1:80829016-80829035 | None:intergenic | 15.0% |
| !!! | TACAATAATTTTGTTTATCT+AGG | + | chr4_1:80829015-80829034 | Msa0576750:intron | 15.0% |
| !!! | TACTTGTTTTTTATAAGTAT+AGG | - | chr4_1:80830515-80830534 | None:intergenic | 15.0% |
| !! | AATAATCAATTAACCTAAAG+AGG | - | chr4_1:80828034-80828053 | None:intergenic | 20.0% |
| !!! | TATTGTGTTTGAAATAATTG+GGG | - | chr4_1:80828251-80828270 | None:intergenic | 20.0% |
| !! | GTATTTAAACAAACTGATAT+AGG | - | chr4_1:80828402-80828421 | None:intergenic | 20.0% |
| !! | ACATAGTACTATATAAATCA+AGG | - | chr4_1:80828466-80828485 | None:intergenic | 20.0% |
| !! | TGATTTATATAGTACTATGT+AGG | + | chr4_1:80828466-80828485 | Msa0576750:intron | 20.0% |
| !!! | ATAAAATAGTCAAAGTGTTT+TGG | - | chr4_1:80828794-80828813 | None:intergenic | 20.0% |
| !! | CAAGTAATTAATAGAAAACA+TGG | + | chr4_1:80830529-80830548 | Msa0576750:three_prime_UTR | 20.0% |
| ! | TCGTAACATTTATTCAAGAA+AGG | - | chr4_1:80828126-80828145 | None:intergenic | 25.0% |
| ! | CTTGAATAAATGTTACGATA+TGG | + | chr4_1:80828128-80828147 | Msa0576750:CDS | 25.0% |
| ! | AAAATCCATTAGTAGTACTT+AGG | + | chr4_1:80828492-80828511 | Msa0576750:intron | 25.0% |
| ! | AAATCCATTAGTAGTACTTA+GGG | + | chr4_1:80828493-80828512 | Msa0576750:intron | 25.0% |
| ! | TATGGATAAACAAGTTAATC+AGG | - | chr4_1:80828879-80828898 | None:intergenic | 25.0% |
| ! | TTGCAAATGAAAACTTCATT+AGG | + | chr4_1:80829150-80829169 | Msa0576750:CDS | 25.0% |
| ! | TGCAAATGAAAACTTCATTA+GGG | + | chr4_1:80829151-80829170 | Msa0576750:CDS | 25.0% |
| !! | AGAAGTTGAGAATCTAAAAT+CGG | + | chr4_1:80829307-80829326 | Msa0576750:CDS | 25.0% |
| !!! | TCTTCAACATTTTTTAGGAT+AGG | - | chr4_1:80829839-80829858 | None:intergenic | 25.0% |
| !!! | CAGTATCTTCAACATTTTTT+AGG | - | chr4_1:80829844-80829863 | None:intergenic | 25.0% |
| ! | CCTAATATCTGAATACTAAT+CGG | + | chr4_1:80830313-80830332 | Msa0576750:three_prime_UTR | 25.0% |
| ! | CTAATATCTGAATACTAATC+GGG | + | chr4_1:80830314-80830333 | Msa0576750:three_prime_UTR | 25.0% |
| ! | CATATTACGTTTAGATTGTA+AGG | + | chr4_1:80830426-80830445 | Msa0576750:three_prime_UTR | 25.0% |
| ACTAACTACAAACAAAGACT+TGG | - | chr4_1:80827943-80827962 | None:intergenic | 30.0% | |
| AATTAACCTAAAGAGGAAGA+AGG | - | chr4_1:80828027-80828046 | None:intergenic | 30.0% | |
| TGATATAGGGTTAATGAAGT+CGG | - | chr4_1:80828388-80828407 | None:intergenic | 30.0% | |
| AATCCATTAGTAGTACTTAG+GGG | + | chr4_1:80828494-80828513 | Msa0576750:intron | 30.0% | |
| !!! | TTACTTCTACGACACTTTTT+TGG | + | chr4_1:80828525-80828544 | Msa0576750:intron | 30.0% |
| TGTAGTAAAGGTTTCTCAAA+AGG | - | chr4_1:80828959-80828978 | None:intergenic | 30.0% | |
| ACACTTTAAACAAATCGAGA+CGG | - | chr4_1:80829053-80829072 | None:intergenic | 30.0% | |
| TGATGACTGTTGAATTTATC+AGG | + | chr4_1:80829094-80829113 | Msa0576750:intron | 30.0% | |
| GATGACTGTTGAATTTATCA+GGG | + | chr4_1:80829095-80829114 | Msa0576750:intron | 30.0% | |
| GCAAATGAAAACTTCATTAG+GGG | + | chr4_1:80829152-80829171 | Msa0576750:CDS | 30.0% | |
| TTCACCCTAAGGAAAATAAT+TGG | + | chr4_1:80829501-80829520 | Msa0576750:CDS | 30.0% | |
| ! | AACGCCAATTATTTTCCTTA+GGG | - | chr4_1:80829508-80829527 | None:intergenic | 30.0% |
| ! | AAACGCCAATTATTTTCCTT+AGG | - | chr4_1:80829509-80829528 | None:intergenic | 30.0% |
| ACGGAGAATGATTATCTAAT+GGG | - | chr4_1:80829760-80829779 | None:intergenic | 30.0% | |
| AACGGAGAATGATTATCTAA+TGG | - | chr4_1:80829761-80829780 | None:intergenic | 30.0% | |
| !!! | TGATTTTGAAGCGATGATTA+TGG | + | chr4_1:80829940-80829959 | Msa0576750:CDS | 30.0% |
| AGTTGAACTTATATGCTGAT+GGG | + | chr4_1:80829985-80830004 | Msa0576750:exon | 30.0% | |
| !! | AAATCGATTTTCTCAGTTTG+AGG | - | chr4_1:80830041-80830060 | None:intergenic | 30.0% |
| TATAAGCTAGCAAAATACAG+AGG | + | chr4_1:80830069-80830088 | Msa0576750:three_prime_UTR | 30.0% | |
| ATAAGCTAGCAAAATACAGA+GGG | + | chr4_1:80830070-80830089 | Msa0576750:three_prime_UTR | 30.0% | |
| CAAATCAGCTAATCAAATTG+TGG | + | chr4_1:80830246-80830265 | Msa0576750:intron | 30.0% | |
| CCGATTAGTATTCAGATATT+AGG | - | chr4_1:80830316-80830335 | None:intergenic | 30.0% | |
| TCTATTCCTTCTTCCTCTTT+AGG | + | chr4_1:80828018-80828037 | Msa0576750:five_prime_UTR | 35.0% | |
| GAAACTATTGTTACCATCAG+CGG | - | chr4_1:80828190-80828209 | None:intergenic | 35.0% | |
| TTAATGAAGTCGGTAATTGG+GGG | - | chr4_1:80828378-80828397 | None:intergenic | 35.0% | |
| GTTAATGAAGTCGGTAATTG+GGG | - | chr4_1:80828379-80828398 | None:intergenic | 35.0% | |
| GGTTAATGAAGTCGGTAATT+GGG | - | chr4_1:80828380-80828399 | None:intergenic | 35.0% | |
| AAACCCCTAAGTACTACTAA+TGG | - | chr4_1:80828500-80828519 | None:intergenic | 35.0% | |
| AACAGTGGTCTGTTCAAATT+CGG | - | chr4_1:80828619-80828638 | None:intergenic | 35.0% | |
| !! | ACTATTTCTAGAAGCTATCC+TGG | - | chr4_1:80828759-80828778 | None:intergenic | 35.0% |
| TTTCAATTCAGCAGCATCAA+AGG | - | chr4_1:80828914-80828933 | None:intergenic | 35.0% | |
| TGTAGGTTATTCTACTGAGT+GGG | - | chr4_1:80828999-80829018 | None:intergenic | 35.0% | |
| TTGTAGGTTATTCTACTGAG+TGG | - | chr4_1:80829000-80829019 | None:intergenic | 35.0% | |
| GTTGAATTTATCAGGGTTTC+AGG | + | chr4_1:80829102-80829121 | Msa0576750:intron | 35.0% | |
| GAAAATTGATGCAGATCACT+GGG | + | chr4_1:80829124-80829143 | Msa0576750:CDS | 35.0% | |
| TGCTGAAGAATATACGTAGA+AGG | + | chr4_1:80829186-80829205 | Msa0576750:CDS | 35.0% | |
| TGATTTACTGCTTCTTGTGA+TGG | - | chr4_1:80829275-80829294 | None:intergenic | 35.0% | |
| TCACAAGAAGCAGTAAATCA+TGG | + | chr4_1:80829275-80829294 | Msa0576750:CDS | 35.0% | |
| !!! | TTTAGTTTTTCAGCAACAGG+TGG | - | chr4_1:80829614-80829633 | None:intergenic | 35.0% |
| !!! | GGTTTTAGTTTTTCAGCAAC+AGG | - | chr4_1:80829617-80829636 | None:intergenic | 35.0% |
| ! | AGGTTCTGGTTGCTTATTAA+AGG | - | chr4_1:80829660-80829679 | None:intergenic | 35.0% |
| GGTAAATCAGGTACAAGAAA+CGG | - | chr4_1:80829779-80829798 | None:intergenic | 35.0% | |
| GTTTCTTGTACCTGATTTAC+CGG | + | chr4_1:80829778-80829797 | Msa0576750:CDS | 35.0% | |
| !! | TCGTGGGAACAACTATTTTT+AGG | + | chr4_1:80829809-80829828 | Msa0576750:CDS | 35.0% |
| TGAAGCGATGATTATGGAAA+TGG | + | chr4_1:80829946-80829965 | Msa0576750:CDS | 35.0% | |
| GAGTTGAACTTATATGCTGA+TGG | + | chr4_1:80829984-80830003 | Msa0576750:exon | 35.0% | |
| GTTGAACTTATATGCTGATG+GGG | + | chr4_1:80829986-80830005 | Msa0576750:three_prime_UTR | 35.0% | |
| TTGAACTTATATGCTGATGG+GGG | + | chr4_1:80829987-80830006 | Msa0576750:three_prime_UTR | 35.0% | |
| !! | TTTTGCTAGCTTATAGAAGC+TGG | - | chr4_1:80830064-80830083 | None:intergenic | 35.0% |
| AATATTATAACTTCACCGCG+AGG | - | chr4_1:80830110-80830129 | None:intergenic | 35.0% | |
| ACAAATGATAAAGACAGAGC+AGG | - | chr4_1:80830214-80830233 | None:intergenic | 35.0% | |
| TCAAATTGTGGAGATGATTG+AGG | + | chr4_1:80830258-80830277 | Msa0576750:intron | 35.0% | |
| GTTTAGATTGTAAGGAAGAG+CGG | + | chr4_1:80830434-80830453 | Msa0576750:three_prime_UTR | 35.0% | |
| CATTCACTCATCTCATCTGT+TGG | + | chr4_1:80827983-80828002 | Msa0576750:five_prime_UTR | 40.0% | |
| GGGTTAATGAAGTCGGTAAT+TGG | - | chr4_1:80828381-80828400 | None:intergenic | 40.0% | |
| TCATTGACAATCGCGGAAAA+TGG | - | chr4_1:80828706-80828725 | None:intergenic | 40.0% | |
| CTTACAGTCATTGACAATCG+CGG | - | chr4_1:80828713-80828732 | None:intergenic | 40.0% | |
| TCTAGAAGCTATCCTGGTTA+CGG | - | chr4_1:80828753-80828772 | None:intergenic | 40.0% | |
| CAAAGGATTACGGTTCTCTA+TGG | - | chr4_1:80828897-80828916 | None:intergenic | 40.0% | |
| TCAGCAGCATCAAAGGATTA+CGG | - | chr4_1:80828907-80828926 | None:intergenic | 40.0% | |
| GTTGCATGTTGCTGTAGTAA+AGG | - | chr4_1:80828971-80828990 | None:intergenic | 40.0% | |
| AATCGAGACGGTAAAAATGC+AGG | - | chr4_1:80829041-80829060 | None:intergenic | 40.0% | |
| GGAAAATTGATGCAGATCAC+TGG | + | chr4_1:80829123-80829142 | Msa0576750:CDS | 40.0% | |
| AAGCAGTAAATCATGGCCTT+TGG | + | chr4_1:80829282-80829301 | Msa0576750:CDS | 40.0% | |
| GATTCTCAACTTCTCTCCAA+AGG | - | chr4_1:80829301-80829320 | None:intergenic | 40.0% | |
| GCTTACTCTCAGAAGATTCA+AGG | - | chr4_1:80829376-80829395 | None:intergenic | 40.0% | |
| ! | AAGAAACTGGTCTGTCATCT+TGG | - | chr4_1:80829565-80829584 | None:intergenic | 40.0% |
| ACAGACCAGTTTCTTCTGAT+GGG | + | chr4_1:80829570-80829589 | Msa0576750:CDS | 40.0% | |
| ATCATCCCATCAGAAGAAAC+TGG | - | chr4_1:80829578-80829597 | None:intergenic | 40.0% | |
| TTATTAAAGGCAGGAGATCG+TGG | - | chr4_1:80829647-80829666 | None:intergenic | 40.0% | |
| TCTGGTTGCTTATTAAAGGC+AGG | - | chr4_1:80829656-80829675 | None:intergenic | 40.0% | |
| TAATAAGCAACCAGAACCTG+AGG | + | chr4_1:80829661-80829680 | Msa0576750:CDS | 40.0% | |
| AACCTGAGGTTTCTACAGAT+GGG | + | chr4_1:80829675-80829694 | Msa0576750:CDS | 40.0% | |
| AGATACTGATCGTGAAAACG+AGG | + | chr4_1:80829856-80829875 | Msa0576750:CDS | 40.0% | |
| AACTGTTAGTGACATGGAGA+TGG | + | chr4_1:80829883-80829902 | Msa0576750:CDS | 40.0% | |
| TGAACTTATATGCTGATGGG+GGG | + | chr4_1:80829988-80830007 | Msa0576750:three_prime_UTR | 40.0% | |
| GAAGGAAACAAATTTCCTCG+CGG | + | chr4_1:80830092-80830111 | Msa0576750:three_prime_UTR | 40.0% | |
| ! | ACTAATCGGGATTTGCCTTT+TGG | + | chr4_1:80830327-80830346 | Msa0576750:three_prime_UTR | 40.0% |
| !!! | TGCCTTTTGGCTTCTTGATA+TGG | + | chr4_1:80830340-80830359 | Msa0576750:three_prime_UTR | 40.0% |
| CACCATATCAAGAAGCCAAA+AGG | - | chr4_1:80830345-80830364 | None:intergenic | 40.0% | |
| ATGGTCTGTAACTAGTACGA+TGG | + | chr4_1:80830392-80830411 | Msa0576750:three_prime_UTR | 40.0% | |
| AAAAAAACGCGTGGAGTCGA+GGG | + | chr4_1:80827879-80827898 | Msa0576750:five_prime_UTR | 45.0% | |
| !! | GAGATGATGGAATCGGTTGA+AGG | - | chr4_1:80828162-80828181 | None:intergenic | 45.0% |
| ! | CAACCGATTCCATCATCTCT+TGG | + | chr4_1:80828163-80828182 | Msa0576750:CDS | 45.0% |
| !! | GGACCAAGAGATGATGGAAT+CGG | - | chr4_1:80828169-80828188 | None:intergenic | 45.0% |
| GAGTGAGAATTGATCAGCGT+TGG | - | chr4_1:80828220-80828239 | None:intergenic | 45.0% | |
| AGTGTATCGCAGAACAACAG+TGG | - | chr4_1:80828634-80828653 | None:intergenic | 45.0% | |
| TTGACAATCGCGGAAAATGG+CGG | - | chr4_1:80828703-80828722 | None:intergenic | 45.0% | |
| TTCAGCTTACTTCCGTAACC+AGG | + | chr4_1:80828738-80828757 | Msa0576750:intron | 45.0% | |
| ! | TCATCGCGATTGTCTTTTGG+CGG | - | chr4_1:80829251-80829270 | None:intergenic | 45.0% |
| ! | GGTTCATCGCGATTGTCTTT+TGG | - | chr4_1:80829254-80829273 | None:intergenic | 45.0% |
| GATGCTTCTCCATTCCTTCA+AGG | - | chr4_1:80829418-80829437 | None:intergenic | 45.0% | |
| GATGCTCTCATTCTTGGTCA+TGG | + | chr4_1:80829445-80829464 | Msa0576750:CDS | 45.0% | |
| !! | AATTGGCGTTTCTCTGAAGC+AGG | + | chr4_1:80829518-80829537 | Msa0576750:CDS | 45.0% |
| !! | ATTGGCGTTTCTCTGAAGCA+GGG | + | chr4_1:80829519-80829538 | Msa0576750:CDS | 45.0% |
| !! | TCTCTGAAGCAGGGAATATG+TGG | + | chr4_1:80829528-80829547 | Msa0576750:CDS | 45.0% |
| !! | CTCTGAAGCAGGGAATATGT+GGG | + | chr4_1:80829529-80829548 | Msa0576750:CDS | 45.0% |
| GTCTGTCATCTTGGTTACCT+TGG | - | chr4_1:80829556-80829575 | None:intergenic | 45.0% | |
| GACAGACCAGTTTCTTCTGA+TGG | + | chr4_1:80829569-80829588 | Msa0576750:CDS | 45.0% | |
| TCTGTAGAAACCTCAGGTTC+TGG | - | chr4_1:80829674-80829693 | None:intergenic | 45.0% | |
| GAACCTGAGGTTTCTACAGA+TGG | + | chr4_1:80829674-80829693 | Msa0576750:CDS | 45.0% | |
| AACCCATCTGTAGAAACCTC+AGG | - | chr4_1:80829680-80829699 | None:intergenic | 45.0% | |
| GTACCTGATTTACCGGATGA+CGG | + | chr4_1:80829785-80829804 | Msa0576750:CDS | 45.0% | |
| GGAGCAAACTGTTAGTGACA+TGG | + | chr4_1:80829877-80829896 | Msa0576750:CDS | 45.0% | |
| ! | TATATGCTGATGGGGGGTAT+TGG | + | chr4_1:80829994-80830013 | Msa0576750:three_prime_UTR | 45.0% |
| GCTAGCAAAATACAGAGGGA+AGG | + | chr4_1:80830074-80830093 | Msa0576750:three_prime_UTR | 45.0% | |
| AAACAACTGCTGGAGGAAGA+TGG | - | chr4_1:80830162-80830181 | None:intergenic | 45.0% | |
| GATGAGGATCAAACAACTGC+TGG | - | chr4_1:80830172-80830191 | None:intergenic | 45.0% | |
| GCAGTTGTTTGATCCTCATC+TGG | + | chr4_1:80830172-80830191 | Msa0576750:three_prime_UTR | 45.0% | |
| GCTTACACTGAATCCAGATG+AGG | - | chr4_1:80830188-80830207 | None:intergenic | 45.0% | |
| ATGATAAAGACAGAGCAGGC+AGG | - | chr4_1:80830210-80830229 | None:intergenic | 45.0% | |
| GTTACAGACCATACAACTCC+CGG | - | chr4_1:80830384-80830403 | None:intergenic | 45.0% | |
| GCTTAACAGTTGCACACACA+TGG | + | chr4_1:80830486-80830505 | Msa0576750:three_prime_UTR | 45.0% | |
| !! | GATTATTAATAATAATATAA+TGG | + | chr4_1:80828047-80828066 | Msa0576750:exon | 5.0% |
| !! | ATACTATATTATATTATTAA+TGG | + | chr4_1:80828423-80828442 | Msa0576750:intron | 5.0% |
| !! | TACTATATTATATTATTAAT+GGG | + | chr4_1:80828424-80828443 | Msa0576750:intron | 5.0% |
| GAAAAAAACGCGTGGAGTCG+AGG | + | chr4_1:80827878-80827897 | Msa0576750:five_prime_UTR | 50.0% | |
| ATCAGCGGACCAAGAGATGA+TGG | - | chr4_1:80828175-80828194 | None:intergenic | 50.0% | |
| ATCATCTCTTGGTCCGCTGA+TGG | + | chr4_1:80828174-80828193 | Msa0576750:CDS | 50.0% | |
| GAAGTCGGTAATTGGGGGAA+AGG | - | chr4_1:80828373-80828392 | None:intergenic | 50.0% | |
| !! | TAAGCCCTTCTGAGACCGTT+TGG | + | chr4_1:80828582-80828601 | Msa0576750:intron | 50.0% |
| !! | AAGCCCTTCTGAGACCGTTT+GGG | + | chr4_1:80828583-80828602 | Msa0576750:intron | 50.0% |
| TCTCCCAAACGGTCTCAGAA+GGG | - | chr4_1:80828589-80828608 | None:intergenic | 50.0% | |
| TCGGCATAAGCTCTCCCAAA+CGG | - | chr4_1:80828600-80828619 | None:intergenic | 50.0% | |
| TGCTGATCTGCAGCAACATG+TGG | - | chr4_1:80829218-80829237 | None:intergenic | 50.0% | |
| ! | CGATTGTCTTTTGGCGGCAA+TGG | - | chr4_1:80829245-80829264 | None:intergenic | 50.0% |
| GGATAGAAAAACCCTCACGC+AGG | + | chr4_1:80829328-80829347 | Msa0576750:CDS | 50.0% | |
| AAAAACCCTCACGCAGGAGT+TGG | + | chr4_1:80829334-80829353 | Msa0576750:CDS | 50.0% | |
| TTTGACCAACTCCTGCGTGA+GGG | - | chr4_1:80829342-80829361 | None:intergenic | 50.0% | |
| CTACTGAGTGATCGCCTTGA+AGG | + | chr4_1:80829401-80829420 | Msa0576750:CDS | 50.0% | |
| GAGTGATCGCCTTGAAGGAA+TGG | + | chr4_1:80829406-80829425 | Msa0576750:CDS | 50.0% | |
| GCAGCAGATGCTCTCATTCT+TGG | + | chr4_1:80829439-80829458 | Msa0576750:CDS | 50.0% | |
| GCAGCTGAACCAAGAATCCA+GGG | - | chr4_1:80829481-80829500 | None:intergenic | 50.0% | |
| AGCAGCTGAACCAAGAATCC+AGG | - | chr4_1:80829482-80829501 | None:intergenic | 50.0% | |
| GAACCGTCATCCGGTAAATC+AGG | - | chr4_1:80829791-80829810 | None:intergenic | 50.0% | |
| ! | ATTTACCGGATGACGGTTCG+TGG | + | chr4_1:80829792-80829811 | Msa0576750:CDS | 50.0% |
| ! | TTTACCGGATGACGGTTCGT+GGG | + | chr4_1:80829793-80829812 | Msa0576750:CDS | 50.0% |
| !! | TTGGATGGGCTACAGGGATT+TGG | + | chr4_1:80830013-80830032 | Msa0576750:three_prime_UTR | 50.0% |
| GAGGATCAAACAACTGCTGG+AGG | - | chr4_1:80830169-80830188 | None:intergenic | 50.0% | |
| GTAAGGAAGAGCGGTCTTGA+AGG | + | chr4_1:80830443-80830462 | Msa0576750:three_prime_UTR | 50.0% | |
| GTGTGTGCAACTGTTAAGCG+TGG | - | chr4_1:80830485-80830504 | None:intergenic | 50.0% | |
| !! | GAGAAGGGTGGTTCTGGTTC+TGG | + | chr4_1:80828090-80828109 | Msa0576750:CDS | 55.0% |
| !! | GGGTGGTTCTGGTTCTGGTT+CGG | + | chr4_1:80828095-80828114 | Msa0576750:CDS | 55.0% |
| !! | TGGTTCTGGTTCTGGTTCGG+TGG | + | chr4_1:80828098-80828117 | Msa0576750:CDS | 55.0% |
| CTCTCCCAAACGGTCTCAGA+AGG | - | chr4_1:80828590-80828609 | None:intergenic | 55.0% | |
| GTTTGACCAACTCCTGCGTG+AGG | - | chr4_1:80829343-80829362 | None:intergenic | 55.0% | |
| CGTGCAATGCCCTGGATTCT+TGG | + | chr4_1:80829469-80829488 | Msa0576750:CDS | 55.0% | |
| GGTTCAGCTGCTTCACCCTA+AGG | + | chr4_1:80829490-80829509 | Msa0576750:CDS | 55.0% | |
| GCAGGGAATATGTGGGACCA+AGG | + | chr4_1:80829536-80829555 | Msa0576750:CDS | 55.0% | |
| GCAGGAGATCGTGGAACAAC+AGG | - | chr4_1:80829638-80829657 | None:intergenic | 55.0% | |
| TGTTCCCACGAACCGTCATC+CGG | - | chr4_1:80829800-80829819 | None:intergenic | 55.0% | |
| !! | TGCTGATGGGGGGTATTGGA+TGG | + | chr4_1:80829998-80830017 | Msa0576750:three_prime_UTR | 55.0% |
| !! | GCTGATGGGGGGTATTGGAT+GGG | + | chr4_1:80829999-80830018 | Msa0576750:three_prime_UTR | 55.0% |
| !! | GGGGTATTGGATGGGCTACA+GGG | + | chr4_1:80830007-80830026 | Msa0576750:three_prime_UTR | 55.0% |
| ATACAACTCCCGGACGAGAC+GGG | - | chr4_1:80830374-80830393 | None:intergenic | 55.0% | |
| CATACAACTCCCGGACGAGA+CGG | - | chr4_1:80830375-80830394 | None:intergenic | 55.0% | |
| AAAACGCGTGGAGTCGAGGG+AGG | + | chr4_1:80827882-80827901 | Msa0576750:five_prime_UTR | 60.0% | |
| AAACGCGTGGAGTCGAGGGA+GGG | + | chr4_1:80827883-80827902 | Msa0576750:five_prime_UTR | 60.0% | |
| AGCAGCAACAGCGAGCGAGA+AGG | + | chr4_1:80828074-80828093 | Msa0576750:CDS | 60.0% | |
| GCAGCAACAGCGAGCGAGAA+GGG | + | chr4_1:80828075-80828094 | Msa0576750:CDS | 60.0% | |
| GTCATGGTCGTGCAATGCCC+TGG | + | chr4_1:80829461-80829480 | Msa0576750:CDS | 60.0% | |
| !! | GGGGGTATTGGATGGGCTAC+AGG | + | chr4_1:80830006-80830025 | Msa0576750:three_prime_UTR | 60.0% |
| CGTCTCGTCCGGGAGTTGTA+TGG | + | chr4_1:80830373-80830392 | Msa0576750:three_prime_UTR | 60.0% | |
| GCAACAGCGAGCGAGAAGGG+TGG | + | chr4_1:80828078-80828097 | Msa0576750:CDS | 65.0% | |
| GCGAGCGAGAAGGGTGGTTC+TGG | + | chr4_1:80828084-80828103 | Msa0576750:CDS | 65.0% | |
| GTGTCCAGTCCCGTCTCGTC+CGG | + | chr4_1:80830362-80830381 | Msa0576750:three_prime_UTR | 65.0% | |
| TGTCCAGTCCCGTCTCGTCC+GGG | + | chr4_1:80830363-80830382 | Msa0576750:three_prime_UTR | 65.0% | |
| GCGTGGAGTCGAGGGAGGGA+GGG | + | chr4_1:80827887-80827906 | Msa0576750:five_prime_UTR | 70.0% | |
| TGGAGTCGAGGGAGGGAGGG+AGG | + | chr4_1:80827890-80827909 | Msa0576750:five_prime_UTR | 70.0% | |
| GGAGTCGAGGGAGGGAGGGA+GGG | + | chr4_1:80827891-80827910 | Msa0576750:five_prime_UTR | 70.0% | |
| ACTCCCGGACGAGACGGGAC+TGG | - | chr4_1:80830369-80830388 | None:intergenic | 70.0% | |
| CGCGTGGAGTCGAGGGAGGG+AGG | + | chr4_1:80827886-80827905 | Msa0576750:five_prime_UTR | 75.0% | |
| GTCGAGGGAGGGAGGGAGGG+AGG | + | chr4_1:80827894-80827913 | Msa0576750:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 80827878 | 80830579 | 80827878 | ID=Msa0576750;Name=Msa0576750 |
| chr4_1 | mRNA | 80827878 | 80830579 | 80827878 | ID=Msa0576750-mRNA-1;Parent=Msa0576750;Name=Msa0576750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=188|1|1|1|0.5|0.33|3|488|369 |
| chr4_1 | exon | 80827878 | 80828305 | 80827878 | ID=Msa0576750-mRNA-1:exon:29022;Parent=Msa0576750-mRNA-1 |
| chr4_1 | exon | 80829116 | 80830201 | 80829116 | ID=Msa0576750-mRNA-1:exon:29023;Parent=Msa0576750-mRNA-1 |
| chr4_1 | exon | 80830308 | 80830579 | 80830308 | ID=Msa0576750-mRNA-1:exon:29024;Parent=Msa0576750-mRNA-1 |
| chr4_1 | five_prime_UTR | 80827878 | 80828065 | 80827878 | ID=Msa0576750-mRNA-1:five_prime_utr;Parent=Msa0576750-mRNA-1 |
| chr4_1 | CDS | 80828066 | 80828305 | 80828066 | ID=Msa0576750-mRNA-1:cds;Parent=Msa0576750-mRNA-1 |
| chr4_1 | CDS | 80829116 | 80829985 | 80829116 | ID=Msa0576750-mRNA-1:cds;Parent=Msa0576750-mRNA-1 |
| chr4_1 | three_prime_UTR | 80829986 | 80830201 | 80829986 | ID=Msa0576750-mRNA-1:three_prime_utr;Parent=Msa0576750-mRNA-1 |
| chr4_1 | three_prime_UTR | 80830308 | 80830579 | 80830308 | ID=Msa0576750-mRNA-1:three_prime_utr;Parent=Msa0576750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
