Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930920 | XP_003630918.2 | 94.792 | 288 | 14 | 1 | 4 | 290 | 2 | 289 | 9.88e-178 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930920 | sp|Q9ZU94|PDLP6_ARATH | 57.292 | 288 | 113 | 5 | 8 | 290 | 4 | 286 | 1.78e-108 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0930920 | Msa1349890 | 0.917546 | 4.656543e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930920 | MtrunA17_Chr8g0391511 | 94.792 | 288 | 14 | 1 | 4 | 290 | 2 | 289 | 0.0 | 505 |
| Msa0930920 | MtrunA17_Chr5g0434531 | 48.582 | 282 | 136 | 4 | 10 | 288 | 1 | 276 | 3.18e-87 | 265 |
| Msa0930920 | MtrunA17_Chr3g0110311 | 45.833 | 288 | 142 | 4 | 1 | 288 | 1 | 274 | 1.80e-84 | 257 |
| Msa0930920 | MtrunA17_Chr7g0230381 | 37.037 | 270 | 146 | 6 | 9 | 267 | 12 | 268 | 8.60e-55 | 181 |
| Msa0930920 | MtrunA17_Chr1g0168311 | 30.662 | 287 | 184 | 7 | 12 | 288 | 8 | 289 | 1.85e-34 | 128 |
| Msa0930920 | MtrunA17_Chr1g0186151 | 28.521 | 284 | 189 | 3 | 27 | 298 | 26 | 307 | 1.09e-29 | 116 |
| Msa0930920 | MtrunA17_Chr7g0262011 | 27.437 | 277 | 194 | 4 | 14 | 288 | 83 | 354 | 4.12e-26 | 107 |
| Msa0930920 | MtrunA17_Chr1g0190321 | 27.758 | 281 | 176 | 11 | 13 | 278 | 17 | 285 | 2.01e-21 | 93.2 |
| Msa0930920 | MtrunA17_Chr1g0205771 | 23.701 | 308 | 202 | 8 | 33 | 315 | 39 | 338 | 2.41e-18 | 86.7 |
| Msa0930920 | MtrunA17_Chr1g0206291 | 26.778 | 239 | 162 | 5 | 10 | 235 | 20 | 258 | 4.49e-18 | 85.5 |
| Msa0930920 | MtrunA17_Chr6g0475121 | 28.033 | 239 | 153 | 5 | 10 | 235 | 12 | 244 | 7.47e-17 | 82.0 |
| Msa0930920 | MtrunA17_Chr6g0475121 | 27.778 | 180 | 108 | 5 | 79 | 236 | 192 | 371 | 3.22e-12 | 67.8 |
| Msa0930920 | MtrunA17_Chr8g0354341 | 26.633 | 199 | 137 | 3 | 48 | 237 | 43 | 241 | 1.74e-16 | 78.6 |
| Msa0930920 | MtrunA17_Chr6g0475001 | 25.714 | 245 | 156 | 5 | 11 | 235 | 6 | 244 | 2.32e-16 | 80.5 |
| Msa0930920 | MtrunA17_Chr6g0475001 | 25.967 | 181 | 112 | 5 | 79 | 237 | 192 | 372 | 3.05e-11 | 64.7 |
| Msa0930920 | MtrunA17_Chr6g0474901 | 28.095 | 210 | 138 | 3 | 39 | 235 | 28 | 237 | 6.31e-16 | 79.3 |
| Msa0930920 | MtrunA17_Chr6g0474901 | 25.543 | 184 | 109 | 4 | 79 | 237 | 185 | 365 | 7.29e-11 | 63.9 |
| Msa0930920 | MtrunA17_Chr6g0474901 | 23.588 | 301 | 199 | 9 | 28 | 309 | 267 | 555 | 7.90e-11 | 63.5 |
| Msa0930920 | MtrunA17_Chr2g0323011 | 26.214 | 206 | 132 | 5 | 44 | 235 | 39 | 238 | 7.15e-16 | 76.6 |
| Msa0930920 | MtrunA17_Chr6g0475201 | 26.471 | 238 | 160 | 5 | 11 | 235 | 8 | 243 | 8.72e-16 | 79.0 |
| Msa0930920 | MtrunA17_Chr6g0475201 | 28.177 | 181 | 107 | 5 | 79 | 236 | 191 | 371 | 9.34e-13 | 69.7 |
| Msa0930920 | MtrunA17_Chr8g0354351 | 22.222 | 243 | 160 | 5 | 10 | 237 | 10 | 238 | 1.62e-15 | 78.2 |
| Msa0930920 | MtrunA17_Chr1g0206351 | 29.439 | 214 | 137 | 5 | 35 | 235 | 35 | 247 | 3.44e-15 | 77.0 |
| Msa0930920 | MtrunA17_Chr7g0234231 | 26.800 | 250 | 138 | 9 | 12 | 235 | 1 | 231 | 5.00e-15 | 74.3 |
| Msa0930920 | MtrunA17_Chr2g0322981 | 25.123 | 203 | 138 | 5 | 44 | 235 | 39 | 238 | 1.42e-14 | 72.8 |
| Msa0930920 | MtrunA17_Chr7g0226901 | 25.210 | 238 | 166 | 6 | 2 | 236 | 3 | 231 | 1.82e-14 | 72.8 |
| Msa0930920 | MtrunA17_Chr3g0109411 | 27.570 | 214 | 144 | 5 | 33 | 237 | 28 | 239 | 3.41e-14 | 73.9 |
| Msa0930920 | MtrunA17_Chr5g0394001 | 28.571 | 203 | 134 | 4 | 44 | 235 | 41 | 243 | 3.48e-14 | 73.9 |
| Msa0930920 | MtrunA17_Chr3g0081001 | 21.721 | 244 | 167 | 3 | 10 | 237 | 6 | 241 | 6.93e-14 | 73.2 |
| Msa0930920 | MtrunA17_Chr4g0058891 | 30.939 | 181 | 114 | 6 | 84 | 262 | 82 | 253 | 8.10e-14 | 72.8 |
| Msa0930920 | MtrunA17_Chr6g0474811 | 25.000 | 244 | 160 | 6 | 11 | 235 | 6 | 245 | 8.16e-14 | 73.2 |
| Msa0930920 | MtrunA17_Chr6g0474811 | 25.389 | 193 | 121 | 4 | 69 | 238 | 183 | 375 | 1.34e-12 | 69.3 |
| Msa0930920 | MtrunA17_Chr6g0474971 | 27.451 | 204 | 131 | 5 | 47 | 235 | 36 | 237 | 1.37e-13 | 70.9 |
| Msa0930920 | MtrunA17_Chr1g0206531 | 24.335 | 263 | 175 | 7 | 14 | 260 | 15 | 269 | 1.56e-13 | 72.0 |
| Msa0930920 | MtrunA17_Chr6g0474871 | 26.050 | 238 | 162 | 5 | 11 | 235 | 6 | 242 | 1.88e-13 | 72.0 |
| Msa0930920 | MtrunA17_Chr1g0206331 | 24.380 | 242 | 161 | 8 | 11 | 235 | 10 | 246 | 2.74e-13 | 71.2 |
| Msa0930920 | MtrunA17_Chr1g0206361 | 22.593 | 270 | 173 | 5 | 44 | 288 | 47 | 305 | 1.03e-12 | 69.3 |
| Msa0930920 | MtrunA17_Chr6g0474861 | 24.885 | 217 | 141 | 6 | 11 | 213 | 6 | 214 | 1.15e-12 | 69.3 |
| Msa0930920 | MtrunA17_Chr5g0428531 | 25.000 | 248 | 146 | 9 | 13 | 235 | 9 | 241 | 1.40e-12 | 67.8 |
| Msa0930920 | MtrunA17_Chr3g0119041 | 29.839 | 248 | 145 | 11 | 15 | 235 | 10 | 255 | 2.85e-12 | 68.2 |
| Msa0930920 | MtrunA17_Chr1g0206461 | 23.464 | 358 | 245 | 10 | 6 | 347 | 3 | 347 | 7.47e-12 | 66.6 |
| Msa0930920 | MtrunA17_Chr1g0154351 | 23.415 | 205 | 143 | 4 | 44 | 235 | 42 | 245 | 7.74e-12 | 66.6 |
| Msa0930920 | MtrunA17_Chr3g0109461 | 23.077 | 351 | 220 | 11 | 10 | 326 | 3 | 337 | 8.53e-12 | 66.6 |
| Msa0930920 | MtrunA17_Chr6g0475091 | 23.265 | 245 | 167 | 5 | 82 | 309 | 330 | 570 | 1.59e-11 | 65.9 |
| Msa0930920 | MtrunA17_Chr1g0154311 | 22.066 | 213 | 142 | 5 | 40 | 235 | 40 | 245 | 1.96e-11 | 65.5 |
| Msa0930920 | MtrunA17_Chr8g0354271 | 27.053 | 207 | 124 | 5 | 48 | 237 | 48 | 244 | 1.97e-11 | 65.5 |
| Msa0930920 | MtrunA17_Chr1g0206571 | 24.762 | 210 | 139 | 6 | 41 | 235 | 45 | 250 | 2.10e-11 | 64.3 |
| Msa0930920 | MtrunA17_Chr8g0354281 | 22.545 | 275 | 179 | 10 | 26 | 274 | 21 | 287 | 4.67e-11 | 64.3 |
| Msa0930920 | MtrunA17_Chr8g0347571 | 24.167 | 240 | 157 | 7 | 11 | 235 | 7 | 236 | 7.63e-11 | 63.9 |
| Msa0930920 | MtrunA17_Chr3g0081011 | 23.469 | 196 | 144 | 1 | 48 | 237 | 45 | 240 | 8.60e-11 | 63.5 |
| Msa0930920 | MtrunA17_Chr5g0428571 | 21.397 | 229 | 161 | 3 | 26 | 245 | 31 | 249 | 9.00e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930920 | AT2G01660.3 | 57.292 | 288 | 113 | 5 | 8 | 290 | 4 | 286 | 1.73e-109 | 322 |
| Msa0930920 | AT2G01660.1 | 57.292 | 288 | 113 | 5 | 8 | 290 | 4 | 286 | 1.81e-109 | 322 |
| Msa0930920 | AT5G37660.1 | 54.887 | 266 | 109 | 5 | 9 | 269 | 8 | 267 | 2.29e-91 | 276 |
| Msa0930920 | AT5G37660.2 | 54.887 | 266 | 109 | 5 | 9 | 269 | 8 | 267 | 2.97e-91 | 276 |
| Msa0930920 | AT2G01660.2 | 57.741 | 239 | 93 | 4 | 8 | 243 | 4 | 237 | 2.95e-90 | 272 |
| Msa0930920 | AT1G70690.1 | 46.392 | 291 | 142 | 6 | 8 | 287 | 4 | 291 | 6.30e-76 | 237 |
| Msa0930920 | AT3G60720.1 | 39.453 | 256 | 143 | 4 | 30 | 280 | 25 | 273 | 2.87e-55 | 183 |
| Msa0930920 | AT3G60720.3 | 39.453 | 256 | 143 | 4 | 30 | 280 | 25 | 273 | 4.83e-55 | 182 |
| Msa0930920 | AT3G60720.2 | 41.284 | 218 | 118 | 4 | 34 | 244 | 29 | 243 | 4.98e-46 | 158 |
| Msa0930920 | AT2G33330.1 | 29.352 | 293 | 190 | 5 | 12 | 288 | 9 | 300 | 7.06e-31 | 119 |
| Msa0930920 | AT1G04520.1 | 28.283 | 297 | 194 | 5 | 9 | 288 | 9 | 303 | 5.78e-29 | 114 |
| Msa0930920 | AT5G43980.1 | 28.520 | 277 | 176 | 7 | 30 | 288 | 24 | 296 | 5.03e-22 | 95.5 |
| Msa0930920 | AT1G63580.1 | 23.656 | 279 | 186 | 6 | 9 | 271 | 6 | 273 | 2.95e-17 | 81.3 |
| Msa0930920 | AT1G63550.1 | 26.728 | 217 | 138 | 6 | 35 | 235 | 32 | 243 | 1.15e-16 | 80.5 |
| Msa0930920 | AT5G48540.1 | 27.941 | 204 | 131 | 4 | 45 | 235 | 35 | 235 | 1.77e-16 | 79.0 |
| Msa0930920 | AT1G63590.1 | 25.896 | 251 | 162 | 6 | 1 | 235 | 1 | 243 | 2.74e-16 | 78.6 |
| Msa0930920 | AT5G41290.1 | 27.861 | 201 | 131 | 4 | 47 | 235 | 43 | 241 | 9.02e-16 | 77.4 |
| Msa0930920 | AT3G21990.1 | 26.141 | 241 | 160 | 6 | 11 | 235 | 10 | 248 | 1.64e-15 | 75.9 |
| Msa0930920 | AT1G63600.1 | 26.852 | 216 | 135 | 5 | 39 | 235 | 40 | 251 | 1.00e-14 | 74.7 |
| Msa0930920 | AT1G63570.3 | 27.751 | 209 | 137 | 3 | 39 | 235 | 33 | 239 | 3.81e-14 | 72.4 |
| Msa0930920 | AT1G63570.1 | 27.751 | 209 | 137 | 3 | 39 | 235 | 33 | 239 | 3.81e-14 | 72.4 |
| Msa0930920 | AT1G63570.2 | 27.751 | 209 | 137 | 3 | 39 | 235 | 86 | 292 | 6.82e-14 | 72.4 |
| Msa0930920 | AT1G61750.1 | 24.257 | 202 | 142 | 4 | 44 | 235 | 40 | 240 | 2.77e-13 | 70.5 |
| Msa0930920 | AT3G22060.1 | 27.004 | 237 | 154 | 7 | 13 | 235 | 12 | 243 | 5.72e-13 | 68.6 |
| Msa0930920 | AT5G41280.1 | 25.431 | 232 | 158 | 6 | 59 | 278 | 56 | 284 | 6.95e-13 | 68.9 |
| Msa0930920 | AT3G58310.1 | 27.126 | 247 | 149 | 9 | 7 | 235 | 15 | 248 | 7.59e-13 | 68.2 |
| Msa0930920 | AT3G04370.2 | 24.138 | 319 | 196 | 10 | 10 | 287 | 1 | 314 | 7.91e-13 | 68.9 |
| Msa0930920 | AT3G04370.1 | 24.062 | 320 | 196 | 10 | 10 | 287 | 1 | 315 | 1.03e-12 | 68.6 |
| Msa0930920 | AT4G05200.2 | 25.000 | 236 | 161 | 4 | 12 | 235 | 29 | 260 | 1.32e-12 | 69.7 |
| Msa0930920 | AT4G05200.1 | 25.000 | 236 | 161 | 4 | 12 | 235 | 11 | 242 | 1.46e-12 | 69.3 |
| Msa0930920 | AT5G41300.1 | 23.881 | 201 | 139 | 5 | 47 | 235 | 47 | 245 | 5.00e-12 | 66.2 |
| Msa0930920 | AT1G70530.1 | 28.571 | 224 | 137 | 10 | 83 | 289 | 75 | 292 | 2.87e-11 | 65.5 |
| Msa0930920 | AT1G70530.3 | 28.571 | 224 | 137 | 10 | 83 | 289 | 75 | 292 | 2.97e-11 | 65.1 |
| Msa0930920 | AT1G70530.2 | 28.571 | 224 | 137 | 10 | 83 | 289 | 75 | 292 | 3.25e-11 | 65.1 |
Find 92 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCCATTTAACTAGTTT+TGG | 0.146474 | 6_2:+80047464 | Msa0930920:CDS |
| TACTTGGGGTGATATGTATT+TGG | 0.196751 | 6_2:+80043557 | Msa0930920:CDS |
| TTATCCCAAAACTAGTTAAA+TGG | 0.259875 | 6_2:-80047469 | None:intergenic |
| CAGGGTGTGGCGCAGTGTAC+GGG | 0.291220 | 6_2:+80043459 | Msa0930920:CDS |
| AAGACACTAGCCATACTAAT+TGG | 0.326123 | 6_2:+80045171 | Msa0930920:CDS |
| TCAGGGTGTGGCGCAGTGTA+CGG | 0.328071 | 6_2:+80043458 | Msa0930920:CDS |
| CTTCGGATGCGTTTACTAGA+AGG | 0.352140 | 6_2:+80043361 | Msa0930920:CDS |
| TACAACAATTTCACAGTTCC+CGG | 0.356273 | 6_2:+80043102 | Msa0930920:CDS |
| CGGAGTGTGGGGATTCTACT+TGG | 0.371257 | 6_2:+80043541 | Msa0930920:CDS |
| TAAATTAGGGCTAAGTCATA+TGG | 0.395692 | 6_2:+80047496 | Msa0930920:CDS |
| AATGTTACGTGGATAGTAAT+AGG | 0.404096 | 6_2:+80045378 | Msa0930920:CDS |
| AGCAATGAGTCCAATTAGTA+TGG | 0.405107 | 6_2:-80045181 | None:intergenic |
| ATACTAATTGGACTCATTGC+TGG | 0.415948 | 6_2:+80045183 | Msa0930920:CDS |
| GTGAACATTGATCATTGTTA+AGG | 0.420980 | 6_2:-80043173 | None:intergenic |
| GACACAAACTCTTTCATCTT+CGG | 0.422632 | 6_2:+80042982 | Msa0930920:CDS |
| CACGGATATGAGACTGGGAT+TGG | 0.430209 | 6_2:+80047431 | Msa0930920:CDS |
| GCCCGTGCGGTGAGTCAACT+CGG | 0.442965 | 6_2:+80043204 | Msa0930920:CDS |
| GGTGGCGCGTTGCAGCTTGA+AGG | 0.451042 | 6_2:+80043249 | Msa0930920:CDS |
| TTTGATCTCTAGTAAGTGTC+AGG | 0.454235 | 6_2:+80043485 | Msa0930920:CDS |
| TTCACAAAGCTTGGACAAGA+AGG | 0.456635 | 6_2:-80045232 | None:intergenic |
| AGTTTCCGACTCAGCAGAGC+CGG | 0.468190 | 6_2:-80043121 | None:intergenic |
| AAGAAATGTGGACCGTCGAT+TGG | 0.471308 | 6_2:+80043333 | Msa0930920:CDS |
| CTGTTCTCGTAGGCGGAACC+TGG | 0.474749 | 6_2:-80043030 | None:intergenic |
| ATAATTTACCAGAGAAAAGC+AGG | 0.475620 | 6_2:-80045415 | None:intergenic |
| TCCGGTCACGGATATGAGAC+TGG | 0.481518 | 6_2:+80047425 | Msa0930920:CDS |
| GAAATTGTTGTAGTTTGAAA+AGG | 0.487310 | 6_2:-80043091 | None:intergenic |
| AGAAATGTGGACCGTCGATT+GGG | 0.492354 | 6_2:+80043334 | Msa0930920:CDS |
| GAGTTTGTGTCAGAGAATGA+AGG | 0.495190 | 6_2:-80042970 | None:intergenic |
| AGGGTGTGGCGCAGTGTACG+GGG | 0.495239 | 6_2:+80043460 | Msa0930920:CDS |
| GGTCACCACGGCACTGAGAA+AGG | 0.496220 | 6_2:-80043152 | None:intergenic |
| ATTGGACTCATTGCTGGTGT+TGG | 0.497608 | 6_2:+80045189 | Msa0930920:CDS |
| ACGGATATGAGACTGGGATT+GGG | 0.499929 | 6_2:+80047432 | Msa0930920:CDS |
| GGCAATCCAACGGTTGAAAA+CGG | 0.500751 | 6_2:+80043521 | Msa0930920:CDS |
| GGAGTGTGGGGATTCTACTT+GGG | 0.507307 | 6_2:+80043542 | Msa0930920:CDS |
| CGCCACACCCTGAAAATCCT+CGG | 0.524752 | 6_2:-80043448 | None:intergenic |
| GGGATTGGGAATGAGCTGCT+TGG | 0.530805 | 6_2:+80047446 | Msa0930920:CDS |
| ACAAACTCTTTCATCTTCGG+TGG | 0.531696 | 6_2:+80042985 | Msa0930920:CDS |
| TTGTGAAAAGCAGAGAGGTA+TGG | 0.533046 | 6_2:+80045248 | Msa0930920:CDS |
| AGTTCCCGGCTCTGCTGAGT+CGG | 0.535502 | 6_2:+80043116 | Msa0930920:CDS |
| AGTTTGTGTCAGAGAATGAA+GGG | 0.536019 | 6_2:-80042969 | None:intergenic |
| GTGTCAGAGAATGAAGGGAT+TGG | 0.537658 | 6_2:-80042964 | None:intergenic |
| AACGGTTGAAAACGGAGTGT+GGG | 0.539343 | 6_2:+80043529 | Msa0930920:CDS |
| CCCAGTCTCATATCCGTGAC+CGG | 0.541504 | 6_2:-80047426 | None:intergenic |
| CTAGCTATGGCCTCCGGTCA+CGG | 0.541857 | 6_2:+80047413 | Msa0930920:CDS |
| CACTCGCGTGGTAGTAATAA+CGG | 0.542277 | 6_2:+80043615 | Msa0930920:CDS |
| CTTAAAGAAGAATTAACGTA+AGG | 0.547337 | 6_2:-80042793 | None:intergenic |
| TTCGGATGCGTTTACTAGAA+GGG | 0.549399 | 6_2:+80043362 | Msa0930920:CDS |
| CAACCTCTAGCTATGGCCTC+CGG | 0.549573 | 6_2:+80047407 | Msa0930920:CDS |
| ACGCGAGTGATCTCCACCTT+CGG | 0.553618 | 6_2:-80043601 | None:intergenic |
| TAAGTTTCAACCTCTAGCTA+TGG | 0.553879 | 6_2:+80047400 | Msa0930920:CDS |
| CAACGGTTGAAAACGGAGTG+TGG | 0.554354 | 6_2:+80043528 | Msa0930920:CDS |
| AAAGGCTGCTGAGTTGACTA+AGG | 0.558557 | 6_2:-80043073 | None:intergenic |
| ACAGAAGTGGTTAAGAAATG+TGG | 0.566487 | 6_2:+80043321 | Msa0930920:CDS |
| TCTCGTTTCAAATACTCACC+AGG | 0.573214 | 6_2:+80043012 | Msa0930920:CDS |
| TGATCAATGTTCACGTTGCG+TGG | 0.573628 | 6_2:+80043182 | Msa0930920:CDS |
| AAAATTCTTATAACCACCAT+CGG | 0.574694 | 6_2:-80043412 | None:intergenic |
| GTGTCAGGATTGTGTTTCTG+AGG | 0.575791 | 6_2:+80043500 | Msa0930920:CDS |
| TGAGTTCACGCTGTTCTCGT+AGG | 0.584005 | 6_2:-80043040 | None:intergenic |
| TGCTACGTGCGTTATTCCGA+AGG | 0.586039 | 6_2:+80043585 | Msa0930920:CDS |
| ACTTATTTACAGTCGTCCGA+TGG | 0.586949 | 6_2:+80043396 | Msa0930920:CDS |
| CCCGTGCGGTGAGTCAACTC+GGG | 0.587070 | 6_2:+80043205 | Msa0930920:CDS |
| CCGGTCACGGATATGAGACT+GGG | 0.589525 | 6_2:+80047426 | Msa0930920:CDS |
| GTTCACGCTGTTCTCGTAGG+CGG | 0.592613 | 6_2:-80043037 | None:intergenic |
| GTTTCCGACTCAGCAGAGCC+GGG | 0.593473 | 6_2:-80043120 | None:intergenic |
| AAGCTGCAACGCGCCACCGT+AGG | 0.595981 | 6_2:-80043244 | None:intergenic |
| CTCAAACACAAACACAAACA+TGG | 0.597209 | 6_2:+80042903 | Msa0930920:CDS |
| ACCGTCGATTGGGTTGACTT+CGG | 0.598724 | 6_2:+80043344 | Msa0930920:CDS |
| GGGTGTGGCGCAGTGTACGG+GGG | 0.600102 | 6_2:+80043461 | Msa0930920:CDS |
| CCCGAGTTGACTCACCGCAC+GGG | 0.602553 | 6_2:-80043205 | None:intergenic |
| AGAGAATGAAGGGATTGGAA+TGG | 0.608644 | 6_2:-80042959 | None:intergenic |
| TGACCGGAGGCCATAGCTAG+AGG | 0.609022 | 6_2:-80047410 | None:intergenic |
| CTGAGTTGACTAAGGAAGTG+AGG | 0.611457 | 6_2:-80043065 | None:intergenic |
| ACACTATGTTTCGCTACCTA+CGG | 0.611535 | 6_2:+80043228 | Msa0930920:CDS |
| TCCGAAGTCAACCCAATCGA+CGG | 0.617909 | 6_2:-80043345 | None:intergenic |
| TATTTACAGTCGTCCGATGG+TGG | 0.619484 | 6_2:+80043399 | Msa0930920:CDS |
| ACGGTTGAAAACGGAGTGTG+GGG | 0.625310 | 6_2:+80043530 | Msa0930920:CDS |
| GAGTGTGGGGATTCTACTTG+GGG | 0.628812 | 6_2:+80043543 | Msa0930920:CDS |
| GTGTTTCTGAGGCAATCCAA+CGG | 0.629753 | 6_2:+80043511 | Msa0930920:CDS |
| GCTGAGTCGGAAACTGTGTA+CGG | 0.636728 | 6_2:+80043129 | Msa0930920:CDS |
| TTCACGTTGCGTGGCCCGTG+CGG | 0.637077 | 6_2:+80043191 | Msa0930920:CDS |
| CACAGTATCAACAAGTAGTG+TGG | 0.642330 | 6_2:-80047535 | None:intergenic |
| TACGGCCTTTCTCAGTGCCG+TGG | 0.660453 | 6_2:+80043147 | Msa0930920:CDS |
| AGTACAAGACAAGACAGAAG+TGG | 0.676307 | 6_2:+80043308 | Msa0930920:CDS |
| TACGTGCGTTATTCCGAAGG+TGG | 0.683424 | 6_2:+80043588 | Msa0930920:CDS |
| AGTATCAACAAGTAGTGTGG+TGG | 0.683987 | 6_2:-80047532 | None:intergenic |
| AGTCTCATATCCGTGACCGG+AGG | 0.689166 | 6_2:-80047423 | None:intergenic |
| GAAGGTGGAGATCACTCGCG+TGG | 0.691186 | 6_2:+80043603 | Msa0930920:CDS |
| TAATTTACCAGAGAAAAGCA+GGG | 0.696659 | 6_2:-80045414 | None:intergenic |
| GGTAAATAAAGAATGTTACG+TGG | 0.697240 | 6_2:+80045367 | Msa0930920:CDS |
| CTATGTTTCGCTACCTACGG+TGG | 0.712114 | 6_2:+80043231 | Msa0930920:CDS |
| GATCATTGTTAAGGTCACCA+CGG | 0.720890 | 6_2:-80043164 | None:intergenic |
| AAGCTTTGTGAAAAGCAGAG+AGG | 0.747914 | 6_2:+80045243 | Msa0930920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTATTTTTTTATT+TGG | - | chr6_2:80044746-80044765 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAATAACAAC+AGG | - | chr6_2:80043658-80043677 | None:intergenic | 10.0% |
| !! | ATATATGTTAAAACTTAATA+CGG | - | chr6_2:80044477-80044496 | None:intergenic | 10.0% |
| !! | CAAATAATAACATAAATAAA+TGG | - | chr6_2:80045836-80045855 | None:intergenic | 10.0% |
| !! | TATCTAATTATTGTTAATTA+TGG | + | chr6_2:80045912-80045931 | Msa0930920:intron | 10.0% |
| !! | TATTATTATATAAGAAGAAA+AGG | + | chr6_2:80046098-80046117 | Msa0930920:intron | 10.0% |
| !!! | TACTTAAAATGAATGAATTT+TGG | - | chr6_2:80044596-80044615 | None:intergenic | 15.0% |
| !!! | TAAGTAATTGTTTTTCTAAA+AGG | + | chr6_2:80044610-80044629 | Msa0930920:intron | 15.0% |
| !!! | AAGTAATTGTTTTTCTAAAA+GGG | + | chr6_2:80044611-80044630 | Msa0930920:intron | 15.0% |
| !!! | ATTTTATAATCATCACATTA+TGG | - | chr6_2:80046441-80046460 | None:intergenic | 15.0% |
| !!! | TAGATTTTTAACATGATTTA+AGG | - | chr6_2:80046740-80046759 | None:intergenic | 15.0% |
| !!! | AACTGTTTAATTTTATTTGT+TGG | + | chr6_2:80046762-80046781 | Msa0930920:intron | 15.0% |
| !!! | ACTGTTTAATTTTATTTGTT+GGG | + | chr6_2:80046763-80046782 | Msa0930920:intron | 15.0% |
| !! | ATAGATTGTGTAAAAAAAAA+GGG | - | chr6_2:80046968-80046987 | None:intergenic | 15.0% |
| !! | AATAGATTGTGTAAAAAAAA+AGG | - | chr6_2:80046969-80046988 | None:intergenic | 15.0% |
| !! | TATTAAATCCTATCTATAAA+AGG | + | chr6_2:80046985-80047004 | Msa0930920:intron | 15.0% |
| !! | AAAAAGAGAATATATGATTG+TGG | - | chr6_2:80042752-80042771 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATAACAACAGG+AGG | - | chr6_2:80043655-80043674 | None:intergenic | 20.0% |
| !! | GTGATCAAACTTTATATTAT+TGG | - | chr6_2:80043694-80043713 | None:intergenic | 20.0% |
| !! | AAATATTGAATTCACAGTTA+TGG | + | chr6_2:80043755-80043774 | Msa0930920:intron | 20.0% |
| !! | TGGTCTAACAATTTAATTAA+GGG | + | chr6_2:80044268-80044287 | Msa0930920:intron | 20.0% |
| !! | TCAAATTACTGTAATTAGTT+GGG | + | chr6_2:80044296-80044315 | Msa0930920:intron | 20.0% |
| !!! | TTTTCATTAGTATTTGGATT+TGG | + | chr6_2:80044369-80044388 | Msa0930920:intron | 20.0% |
| !! | CTATTCTAATGTATATGTAT+TGG | - | chr6_2:80044446-80044465 | None:intergenic | 20.0% |
| !! | TTAAAACTTAATACGGATAA+TGG | - | chr6_2:80044470-80044489 | None:intergenic | 20.0% |
| !! | TAGAGATTAAAGAATACAAA+AGG | - | chr6_2:80044672-80044691 | None:intergenic | 20.0% |
| !!! | AATATTTTACATTAGCTTTG+TGG | + | chr6_2:80044760-80044779 | Msa0930920:intron | 20.0% |
| !! | GTATAAGACAAAATGAAATT+CGG | - | chr6_2:80045035-80045054 | None:intergenic | 20.0% |
| !! | TATATTATATATACCTTCAC+TGG | - | chr6_2:80045522-80045541 | None:intergenic | 20.0% |
| !! | TTATTAAAGGCTATAACATA+GGG | - | chr6_2:80045683-80045702 | None:intergenic | 20.0% |
| !! | ATTATTAAAGGCTATAACAT+AGG | - | chr6_2:80045684-80045703 | None:intergenic | 20.0% |
| !! | TATGTTATAGCCTTTAATAA+TGG | + | chr6_2:80045683-80045702 | Msa0930920:intron | 20.0% |
| !! | ATGTTATAGCCTTTAATAAT+GGG | + | chr6_2:80045684-80045703 | Msa0930920:intron | 20.0% |
| !!! | TCTTAATCTAACTTTTTGAA+TGG | - | chr6_2:80045780-80045799 | None:intergenic | 20.0% |
| !!! | GTATTCAATTTTTTTAAGTC+AGG | - | chr6_2:80046016-80046035 | None:intergenic | 20.0% |
| !! | AATTATTGCAGGTTATAATT+TGG | - | chr6_2:80046054-80046073 | None:intergenic | 20.0% |
| !! | TATTAATAATTATAGGACCA+TGG | + | chr6_2:80046173-80046192 | Msa0930920:intron | 20.0% |
| !!! | TCTTTTCTTAAACAGAATAT+TGG | + | chr6_2:80046401-80046420 | Msa0930920:intron | 20.0% |
| !! | ATTGCATTATCAAATTCATA+AGG | + | chr6_2:80046490-80046509 | Msa0930920:intron | 20.0% |
| !!! | ACTTGTCTTTACTTTTATAT+AGG | - | chr6_2:80046543-80046562 | None:intergenic | 20.0% |
| !! | CCATAAAAAATGAAATAGAT+GGG | + | chr6_2:80046573-80046592 | Msa0930920:intron | 20.0% |
| !! | TACATAAAAGTCAAAGTAAA+TGG | + | chr6_2:80046866-80046885 | Msa0930920:intron | 20.0% |
| !!! | TTCTATTTTTTTTTTTGGTG+TGG | - | chr6_2:80047256-80047275 | None:intergenic | 20.0% |
| !!! | TTTGGGATAAAAACTAAATT+AGG | + | chr6_2:80047482-80047501 | Msa0930920:CDS | 20.0% |
| !! | TTGGGATAAAAACTAAATTA+GGG | + | chr6_2:80047483-80047502 | Msa0930920:CDS | 20.0% |
| ! | CTTAAAGAAGAATTAACGTA+AGG | - | chr6_2:80042796-80042815 | None:intergenic | 25.0% |
| ! | GAAATTGTTGTAGTTTGAAA+AGG | - | chr6_2:80043094-80043113 | None:intergenic | 25.0% |
| !!! | TACGATAATCTTTCGTTTTT+TGG | + | chr6_2:80043285-80043304 | Msa0930920:CDS | 25.0% |
| ! | AAAATTCTTATAACCACCAT+CGG | - | chr6_2:80043415-80043434 | None:intergenic | 25.0% |
| !! | ATGGTGGTTATAAGAATTTT+AGG | + | chr6_2:80043415-80043434 | Msa0930920:CDS | 25.0% |
| !!! | TTTTTTACCCCTAATTAAAC+TGG | + | chr6_2:80044248-80044267 | Msa0930920:intron | 25.0% |
| ! | TTGTTAGACCAGTTTAATTA+GGG | - | chr6_2:80044259-80044278 | None:intergenic | 25.0% |
| ! | ATTGTTAGACCAGTTTAATT+AGG | - | chr6_2:80044260-80044279 | None:intergenic | 25.0% |
| ! | CTGGTCTAACAATTTAATTA+AGG | + | chr6_2:80044267-80044286 | Msa0930920:intron | 25.0% |
| ! | CTCAAATTACTGTAATTAGT+TGG | + | chr6_2:80044295-80044314 | Msa0930920:intron | 25.0% |
| ! | ATATGCTATATGATCTATGA+TGG | + | chr6_2:80044508-80044527 | Msa0930920:intron | 25.0% |
| ! | ATTAAAGAATACAAAAGGCA+TGG | - | chr6_2:80044667-80044686 | None:intergenic | 25.0% |
| ! | TTTCTTCATTAATTCAAAGC+TGG | - | chr6_2:80044809-80044828 | None:intergenic | 25.0% |
| ! | AAATACTAGGTATCATTTCA+TGG | - | chr6_2:80044857-80044876 | None:intergenic | 25.0% |
| ! | TAGGAGAAATGATAAATACT+AGG | - | chr6_2:80044870-80044889 | None:intergenic | 25.0% |
| ! | ATTTGAAAATTATTGAGCCT+GGG | - | chr6_2:80044919-80044938 | None:intergenic | 25.0% |
| ! | TATTTGAAAATTATTGAGCC+TGG | - | chr6_2:80044920-80044939 | None:intergenic | 25.0% |
| !!! | CTTGAAATGCTGTTTAATTT+TGG | + | chr6_2:80045095-80045114 | Msa0930920:intron | 25.0% |
| !! | CTGGTAAATTATTTGTCTTT+TGG | + | chr6_2:80045426-80045445 | Msa0930920:intron | 25.0% |
| !! | GTAAATTATTTGTCTTTTGG+TGG | + | chr6_2:80045429-80045448 | Msa0930920:intron | 25.0% |
| ! | CAAAGGATTCAATACAAAAA+GGG | - | chr6_2:80045464-80045483 | None:intergenic | 25.0% |
| ! | ACAAAGGATTCAATACAAAA+AGG | - | chr6_2:80045465-80045484 | None:intergenic | 25.0% |
| ! | ATATAGATAGAAAGATCTTG+TGG | + | chr6_2:80045537-80045556 | Msa0930920:intron | 25.0% |
| ! | TTACAGAATGAGTTACAATA+AGG | + | chr6_2:80045573-80045592 | Msa0930920:intron | 25.0% |
| ! | TGATCAATACCCATTATTAA+AGG | - | chr6_2:80045696-80045715 | None:intergenic | 25.0% |
| ! | AATTATTGTTAATTATGGCG+AGG | + | chr6_2:80045917-80045936 | Msa0930920:intron | 25.0% |
| ! | AAATTTCCCAATATAATGCT+TGG | - | chr6_2:80045969-80045988 | None:intergenic | 25.0% |
| ! | ATAACCTGCAATAATTAAGT+AGG | + | chr6_2:80046058-80046077 | Msa0930920:intron | 25.0% |
| ! | TATACCTACTTAATTATTGC+AGG | - | chr6_2:80046065-80046084 | None:intergenic | 25.0% |
| ! | ATGTCATTAGTTAAAGAGAA+AGG | + | chr6_2:80046127-80046146 | Msa0930920:intron | 25.0% |
| ! | GACACTGTTTACTAAATAAA+AGG | - | chr6_2:80046199-80046218 | None:intergenic | 25.0% |
| ! | AATAAAGTAGTGATGTTAAG+TGG | - | chr6_2:80046335-80046354 | None:intergenic | 25.0% |
| ! | TCATAATGAGGTTAAGTAAA+AGG | - | chr6_2:80046361-80046380 | None:intergenic | 25.0% |
| ! | GCCATAAAAAATGAAATAGA+TGG | + | chr6_2:80046572-80046591 | Msa0930920:intron | 25.0% |
| !!! | CCCATCTATTTCATTTTTTA+TGG | - | chr6_2:80046576-80046595 | None:intergenic | 25.0% |
| ! | GAATGAATATTAAGACCAAA+TGG | + | chr6_2:80046621-80046640 | Msa0930920:intron | 25.0% |
| !! | CTTGTTATCATCATCTATTT+CGG | + | chr6_2:80046654-80046673 | Msa0930920:intron | 25.0% |
| ! | TAATCTTAATCACATAGTGA+TGG | - | chr6_2:80046708-80046727 | None:intergenic | 25.0% |
| ! | ATCGATATTAGAATGTTTGT+GGG | + | chr6_2:80047068-80047087 | Msa0930920:intron | 25.0% |
| !!! | CCAATTTTGATAATGCTATT+TGG | - | chr6_2:80047337-80047356 | None:intergenic | 25.0% |
| ! | CCAAATAGCATTATCAAAAT+TGG | + | chr6_2:80047334-80047353 | Msa0930920:intron | 25.0% |
| ! | TAACTAATAGGATCAATGAA+AGG | - | chr6_2:80047366-80047385 | None:intergenic | 25.0% |
| ! | TTTCATTGATCCTATTAGTT+AGG | + | chr6_2:80047365-80047384 | Msa0930920:intron | 25.0% |
| ! | TTATCCCAAAACTAGTTAAA+TGG | - | chr6_2:80047472-80047491 | None:intergenic | 25.0% |
| GTGAACATTGATCATTGTTA+AGG | - | chr6_2:80043176-80043195 | None:intergenic | 30.0% | |
| GATTGTCTATCTCAACTATT+TGG | + | chr6_2:80043786-80043805 | Msa0930920:intron | 30.0% | |
| TTGAAGAGAACATTAACAAG+TGG | + | chr6_2:80043897-80043916 | Msa0930920:intron | 30.0% | |
| TATCATACAAAAGCAAAACG+AGG | - | chr6_2:80044061-80044080 | None:intergenic | 30.0% | |
| TGTTAGACCAGTTTAATTAG+GGG | - | chr6_2:80044258-80044277 | None:intergenic | 30.0% | |
| ! | TTTTACGAGTTTTTTGTTGC+TGG | + | chr6_2:80044329-80044348 | Msa0930920:intron | 30.0% |
| ! | TGGGTGTTTTCATTAGTATT+TGG | + | chr6_2:80044363-80044382 | Msa0930920:intron | 30.0% |
| ! | TTATTCTTTTTGCTCAGCAA+AGG | + | chr6_2:80044702-80044721 | Msa0930920:intron | 30.0% |
| !! | TTTACATTAGCTTTGTGGAA+AGG | + | chr6_2:80044765-80044784 | Msa0930920:intron | 30.0% |
| !! | TCTGCTTTTCAGACATTATT+AGG | - | chr6_2:80044889-80044908 | None:intergenic | 30.0% |
| GAAATTCGGTTCAACTTATA+AGG | - | chr6_2:80045021-80045040 | None:intergenic | 30.0% | |
| ! | CTTTTTGAACAATGTTATGC+AGG | + | chr6_2:80045343-80045362 | Msa0930920:intron | 30.0% |
| GGTAAATAAAGAATGTTACG+TGG | + | chr6_2:80045367-80045386 | Msa0930920:CDS | 30.0% | |
| AATGTTACGTGGATAGTAAT+AGG | + | chr6_2:80045378-80045397 | Msa0930920:CDS | 30.0% | |
| TAATTTACCAGAGAAAAGCA+GGG | - | chr6_2:80045417-80045436 | None:intergenic | 30.0% | |
| ATAATTTACCAGAGAAAAGC+AGG | - | chr6_2:80045418-80045437 | None:intergenic | 30.0% | |
| TCAATACAAAAAGGGAAAGA+TGG | - | chr6_2:80045456-80045475 | None:intergenic | 30.0% | |
| GTGGACAAAGTAAATAAAGA+GGG | - | chr6_2:80045618-80045637 | None:intergenic | 30.0% | |
| TCACTATTTATACACATTGG+TGG | - | chr6_2:80045637-80045656 | None:intergenic | 30.0% | |
| TGCTCACTATTTATACACAT+TGG | - | chr6_2:80045640-80045659 | None:intergenic | 30.0% | |
| AGATCAATAGACCAATAACT+TGG | - | chr6_2:80045869-80045888 | None:intergenic | 30.0% | |
| TGTTTGACCAAGCATTATAT+TGG | + | chr6_2:80045959-80045978 | Msa0930920:intron | 30.0% | |
| GTTTGACCAAGCATTATATT+GGG | + | chr6_2:80045960-80045979 | Msa0930920:intron | 30.0% | |
| GTTTACTAAATAAAAGGCCA+TGG | - | chr6_2:80046193-80046212 | None:intergenic | 30.0% | |
| !!! | TATGTCATCGATTGCTTTTT+TGG | + | chr6_2:80046255-80046274 | Msa0930920:intron | 30.0% |
| !!! | ATGTCATCGATTGCTTTTTT+GGG | + | chr6_2:80046256-80046275 | Msa0930920:intron | 30.0% |
| !!! | TTTGGGTCGCTTTTAATATA+AGG | + | chr6_2:80046273-80046292 | Msa0930920:intron | 30.0% |
| ! | TTCCAAGTCTATCCAATTTT+TGG | + | chr6_2:80046307-80046326 | Msa0930920:intron | 30.0% |
| ATTATGAAAACCTAAGCTCT+TGG | + | chr6_2:80046374-80046393 | Msa0930920:intron | 30.0% | |
| ACAAGTTCATTGAATCCATT+TGG | - | chr6_2:80046639-80046658 | None:intergenic | 30.0% | |
| ATCATCATCTATTTCGGATT+AGG | + | chr6_2:80046660-80046679 | Msa0930920:intron | 30.0% | |
| GTTGGGAATTGCTATATATA+TGG | + | chr6_2:80046780-80046799 | Msa0930920:intron | 30.0% | |
| AATGAAAAGCAACGAACAAA+CGG | - | chr6_2:80046917-80046936 | None:intergenic | 30.0% | |
| CATCGATATTAGAATGTTTG+TGG | + | chr6_2:80047067-80047086 | Msa0930920:intron | 30.0% | |
| ACTAAGATGTTAATGAAGTG+TGG | - | chr6_2:80047129-80047148 | None:intergenic | 30.0% | |
| CAGATAAATATGGTGATAAG+AGG | - | chr6_2:80047155-80047174 | None:intergenic | 30.0% | |
| GTGTACTCAACAGATAAATA+TGG | - | chr6_2:80047165-80047184 | None:intergenic | 30.0% | |
| ATGTGATACACCTAACTAAT+AGG | - | chr6_2:80047378-80047397 | None:intergenic | 30.0% | |
| !!! | TTGGCCATTTAACTAGTTTT+GGG | + | chr6_2:80047465-80047484 | Msa0930920:CDS | 30.0% |
| TAAATTAGGGCTAAGTCATA+TGG | + | chr6_2:80047496-80047515 | Msa0930920:CDS | 30.0% | |
| CTCAAACACAAACACAAACA+TGG | + | chr6_2:80042903-80042922 | Msa0930920:CDS | 35.0% | |
| AGTTTGTGTCAGAGAATGAA+GGG | - | chr6_2:80042972-80042991 | None:intergenic | 35.0% | |
| GACACAAACTCTTTCATCTT+CGG | + | chr6_2:80042982-80043001 | Msa0930920:CDS | 35.0% | |
| TACAACAATTTCACAGTTCC+CGG | + | chr6_2:80043102-80043121 | Msa0930920:CDS | 35.0% | |
| ACAGAAGTGGTTAAGAAATG+TGG | + | chr6_2:80043321-80043340 | Msa0930920:CDS | 35.0% | |
| TTTGATCTCTAGTAAGTGTC+AGG | + | chr6_2:80043485-80043504 | Msa0930920:CDS | 35.0% | |
| TACTTGGGGTGATATGTATT+TGG | + | chr6_2:80043557-80043576 | Msa0930920:CDS | 35.0% | |
| TGTTGCTGGTAAATACTTGT+TGG | + | chr6_2:80044343-80044362 | Msa0930920:intron | 35.0% | |
| GTTGCTGGTAAATACTTGTT+GGG | + | chr6_2:80044344-80044363 | Msa0930920:intron | 35.0% | |
| ACTACACGGATAATACCAAA+AGG | - | chr6_2:80044410-80044429 | None:intergenic | 35.0% | |
| GTATTATCCGTGTAGTTCAT+GGG | + | chr6_2:80044414-80044433 | Msa0930920:intron | 35.0% | |
| GAAATTTCCCATGAACTACA+CGG | - | chr6_2:80044424-80044443 | None:intergenic | 35.0% | |
| ! | AAAGAATACAAAAGGCATGG+TGG | - | chr6_2:80044664-80044683 | None:intergenic | 35.0% |
| CATGGATCGTTATTGTTCTT+TGG | - | chr6_2:80044839-80044858 | None:intergenic | 35.0% | |
| AAGACACTAGCCATACTAAT+TGG | + | chr6_2:80045171-80045190 | Msa0930920:CDS | 35.0% | |
| AGCAATGAGTCCAATTAGTA+TGG | - | chr6_2:80045184-80045203 | None:intergenic | 35.0% | |
| ATACTAATTGGACTCATTGC+TGG | + | chr6_2:80045183-80045202 | Msa0930920:CDS | 35.0% | |
| TTTGAACAATGTTATGCAGG+TGG | + | chr6_2:80045346-80045365 | Msa0930920:intron | 35.0% | |
| ATTGTGCTGGAAACTTACAA+AGG | - | chr6_2:80045481-80045500 | None:intergenic | 35.0% | |
| TTTATAGAAGGGAATTGTGC+TGG | - | chr6_2:80045494-80045513 | None:intergenic | 35.0% | |
| CACTGGCAATCTTTATAGAA+GGG | - | chr6_2:80045505-80045524 | None:intergenic | 35.0% | |
| TCACTGGCAATCTTTATAGA+AGG | - | chr6_2:80045506-80045525 | None:intergenic | 35.0% | |
| TCTATAAAGATTGCCAGTGA+AGG | + | chr6_2:80045506-80045525 | Msa0930920:intron | 35.0% | |
| GACAAAGTAAATAAAGAGGG+TGG | - | chr6_2:80045615-80045634 | None:intergenic | 35.0% | |
| GGTGGACAAAGTAAATAAAG+AGG | - | chr6_2:80045619-80045638 | None:intergenic | 35.0% | |
| TGGGAAATTTGTCACAAGAA+AGG | + | chr6_2:80045979-80045998 | Msa0930920:intron | 35.0% | |
| AGCAATCGATGACATAAAGA+TGG | - | chr6_2:80046251-80046270 | None:intergenic | 35.0% | |
| TGCCAAAAATTGGATAGACT+TGG | - | chr6_2:80046312-80046331 | None:intergenic | 35.0% | |
| ! | TGTTAAGTGGTGCCAAAAAT+TGG | - | chr6_2:80046322-80046341 | None:intergenic | 35.0% |
| ! | GAGCTTAGGTTTTCATAATG+AGG | - | chr6_2:80046373-80046392 | None:intergenic | 35.0% |
| AAGTAAAGACAAGTGTAAGC+AGG | + | chr6_2:80046549-80046568 | Msa0930920:intron | 35.0% | |
| AGTAAAGACAAGTGTAAGCA+GGG | + | chr6_2:80046550-80046569 | Msa0930920:intron | 35.0% | |
| ATGAAAAGCAACGAACAAAC+GGG | - | chr6_2:80046916-80046935 | None:intergenic | 35.0% | |
| ! | TGCAACGTCCTTTTATAGAT+AGG | - | chr6_2:80046996-80047015 | None:intergenic | 35.0% |
| ATGTCCTTCGTTGAATAAAG+TGG | - | chr6_2:80047050-80047069 | None:intergenic | 35.0% | |
| TAAGTTTCAACCTCTAGCTA+TGG | + | chr6_2:80047400-80047419 | Msa0930920:CDS | 35.0% | |
| !! | CTTGGCCATTTAACTAGTTT+TGG | + | chr6_2:80047464-80047483 | Msa0930920:CDS | 35.0% |
| AGAGAATGAAGGGATTGGAA+TGG | - | chr6_2:80042962-80042981 | None:intergenic | 40.0% | |
| GAGTTTGTGTCAGAGAATGA+AGG | - | chr6_2:80042973-80042992 | None:intergenic | 40.0% | |
| ACAAACTCTTTCATCTTCGG+TGG | + | chr6_2:80042985-80043004 | Msa0930920:CDS | 40.0% | |
| TCTCGTTTCAAATACTCACC+AGG | + | chr6_2:80043012-80043031 | Msa0930920:CDS | 40.0% | |
| GATCATTGTTAAGGTCACCA+CGG | - | chr6_2:80043167-80043186 | None:intergenic | 40.0% | |
| ACACTATGTTTCGCTACCTA+CGG | + | chr6_2:80043228-80043247 | Msa0930920:CDS | 40.0% | |
| AGTACAAGACAAGACAGAAG+TGG | + | chr6_2:80043308-80043327 | Msa0930920:CDS | 40.0% | |
| TTCGGATGCGTTTACTAGAA+GGG | + | chr6_2:80043362-80043381 | Msa0930920:CDS | 40.0% | |
| ACTTATTTACAGTCGTCCGA+TGG | + | chr6_2:80043396-80043415 | Msa0930920:CDS | 40.0% | |
| !!! | TTTTAGGACAACTTCTTCCG+AGG | + | chr6_2:80043431-80043450 | Msa0930920:CDS | 40.0% |
| ! | AACTTCTTCCGAGGATTTTC+AGG | + | chr6_2:80043440-80043459 | Msa0930920:CDS | 40.0% |
| ! | ACTTCTTCCGAGGATTTTCA+GGG | + | chr6_2:80043441-80043460 | Msa0930920:CDS | 40.0% |
| TTCGTGCATGTTCGAATTGA+TGG | + | chr6_2:80043933-80043952 | Msa0930920:intron | 40.0% | |
| TGGGTGTGGAAAACTAGAAT+TGG | + | chr6_2:80044213-80044232 | Msa0930920:intron | 40.0% | |
| GGTATTATCCGTGTAGTTCA+TGG | + | chr6_2:80044413-80044432 | Msa0930920:intron | 40.0% | |
| ! | TTCTTTTTGCTCAGCAAAGG+AGG | + | chr6_2:80044705-80044724 | Msa0930920:intron | 40.0% |
| TTCACAAAGCTTGGACAAGA+AGG | - | chr6_2:80045235-80045254 | None:intergenic | 40.0% | |
| !! | TCTCTGCTTTTCACAAAGCT+TGG | - | chr6_2:80045244-80045263 | None:intergenic | 40.0% |
| ! | AAGCTTTGTGAAAAGCAGAG+AGG | + | chr6_2:80045243-80045262 | Msa0930920:CDS | 40.0% |
| TTGTGAAAAGCAGAGAGGTA+TGG | + | chr6_2:80045248-80045267 | Msa0930920:CDS | 40.0% | |
| GCGACTTATGACCAAGTTAT+TGG | + | chr6_2:80045855-80045874 | Msa0930920:intron | 40.0% | |
| ATGCTTGGTCAAACATGAGT+TGG | - | chr6_2:80045954-80045973 | None:intergenic | 40.0% | |
| AAGATTCTCGAGGGATTTCA+TGG | - | chr6_2:80046221-80046240 | None:intergenic | 40.0% | |
| GGAAACAAGAAGATTCTCGA+GGG | - | chr6_2:80046230-80046249 | None:intergenic | 40.0% | |
| TGGAAACAAGAAGATTCTCG+AGG | - | chr6_2:80046231-80046250 | None:intergenic | 40.0% | |
| AAAAGAGAGACCAAGAGCTT+AGG | - | chr6_2:80046387-80046406 | None:intergenic | 40.0% | |
| GAATGATACACGAAACATGG+AGG | + | chr6_2:80046821-80046840 | Msa0930920:intron | 40.0% | |
| GCAATCCAATCCATATCCTA+CGG | + | chr6_2:80046888-80046907 | Msa0930920:intron | 40.0% | |
| TCGTTGAATAAAGTGGTGAG+AGG | - | chr6_2:80047043-80047062 | None:intergenic | 40.0% | |
| CTCACCACTTTATTCAACGA+AGG | + | chr6_2:80047043-80047062 | Msa0930920:intron | 40.0% | |
| GTGTCAGAGAATGAAGGGAT+TGG | - | chr6_2:80042967-80042986 | None:intergenic | 45.0% | |
| ! | CTGAGTTGACTAAGGAAGTG+AGG | - | chr6_2:80043068-80043087 | None:intergenic | 45.0% |
| ! | AAAGGCTGCTGAGTTGACTA+AGG | - | chr6_2:80043076-80043095 | None:intergenic | 45.0% |
| TGATCAATGTTCACGTTGCG+TGG | + | chr6_2:80043182-80043201 | Msa0930920:CDS | 45.0% | |
| AAGAAATGTGGACCGTCGAT+TGG | + | chr6_2:80043333-80043352 | Msa0930920:CDS | 45.0% | |
| ! | AGAAATGTGGACCGTCGATT+GGG | + | chr6_2:80043334-80043353 | Msa0930920:CDS | 45.0% |
| CTTCGGATGCGTTTACTAGA+AGG | + | chr6_2:80043361-80043380 | Msa0930920:CDS | 45.0% | |
| TATTTACAGTCGTCCGATGG+TGG | + | chr6_2:80043399-80043418 | Msa0930920:CDS | 45.0% | |
| ! | GTGTCAGGATTGTGTTTCTG+AGG | + | chr6_2:80043500-80043519 | Msa0930920:CDS | 45.0% |
| !! | GTGTTTCTGAGGCAATCCAA+CGG | + | chr6_2:80043511-80043530 | Msa0930920:CDS | 45.0% |
| GGCAATCCAACGGTTGAAAA+CGG | + | chr6_2:80043521-80043540 | Msa0930920:CDS | 45.0% | |
| AACGGTTGAAAACGGAGTGT+GGG | + | chr6_2:80043529-80043548 | Msa0930920:CDS | 45.0% | |
| CACTCGCGTGGTAGTAATAA+CGG | + | chr6_2:80043615-80043634 | Msa0930920:CDS | 45.0% | |
| ! | ACGAAGCTACTTGTGCCTTT+TGG | + | chr6_2:80044392-80044411 | Msa0930920:intron | 45.0% |
| GAAAAGCAGAATAGCATCCC+AGG | + | chr6_2:80044899-80044918 | Msa0930920:intron | 45.0% | |
| ATTGGACTCATTGCTGGTGT+TGG | + | chr6_2:80045189-80045208 | Msa0930920:CDS | 45.0% | |
| !! | CATTTGTCCCTGCTTTTCTC+TGG | + | chr6_2:80045407-80045426 | Msa0930920:CDS | 45.0% |
| CGCGAATGATACACGAAACA+TGG | + | chr6_2:80046818-80046837 | Msa0930920:intron | 45.0% | |
| ACGGATATGAGACTGGGATT+GGG | + | chr6_2:80047432-80047451 | Msa0930920:CDS | 45.0% | |
| !! | AAATAATAACATAAATAAAT+GGG | - | chr6_2:80045835-80045854 | None:intergenic | 5.0% |
| !!! | TATAAAGTATTAATAATTAT+AGG | + | chr6_2:80046166-80046185 | Msa0930920:intron | 5.0% |
| !!! | TTATTTTCTATTTTTTTTTT+TGG | - | chr6_2:80047261-80047280 | None:intergenic | 5.0% |
| !!! | TTTTAAATCAATAAAAAAAT+TGG | - | chr6_2:80047290-80047309 | None:intergenic | 5.0% |
| !!! | ATTTAAAATATAAAATAAGT+CGG | + | chr6_2:80047302-80047321 | Msa0930920:intron | 5.0% |
| TGAGTTCACGCTGTTCTCGT+AGG | - | chr6_2:80043043-80043062 | None:intergenic | 50.0% | |
| GCTGAGTCGGAAACTGTGTA+CGG | + | chr6_2:80043129-80043148 | Msa0930920:CDS | 50.0% | |
| CTATGTTTCGCTACCTACGG+TGG | + | chr6_2:80043231-80043250 | Msa0930920:CDS | 50.0% | |
| !! | ACCGTCGATTGGGTTGACTT+CGG | + | chr6_2:80043344-80043363 | Msa0930920:CDS | 50.0% |
| TCCGAAGTCAACCCAATCGA+CGG | - | chr6_2:80043348-80043367 | None:intergenic | 50.0% | |
| !! | TTCCGAGGATTTTCAGGGTG+TGG | + | chr6_2:80043446-80043465 | Msa0930920:CDS | 50.0% |
| ! | CACACTCCGTTTTCAACCGT+TGG | - | chr6_2:80043530-80043549 | None:intergenic | 50.0% |
| CAACGGTTGAAAACGGAGTG+TGG | + | chr6_2:80043528-80043547 | Msa0930920:CDS | 50.0% | |
| ACGGTTGAAAACGGAGTGTG+GGG | + | chr6_2:80043530-80043549 | Msa0930920:CDS | 50.0% | |
| GGAGTGTGGGGATTCTACTT+GGG | + | chr6_2:80043542-80043561 | Msa0930920:CDS | 50.0% | |
| GAGTGTGGGGATTCTACTTG+GGG | + | chr6_2:80043543-80043562 | Msa0930920:CDS | 50.0% | |
| TGCTACGTGCGTTATTCCGA+AGG | + | chr6_2:80043585-80043604 | Msa0930920:CDS | 50.0% | |
| TACGTGCGTTATTCCGAAGG+TGG | + | chr6_2:80043588-80043607 | Msa0930920:CDS | 50.0% | |
| AAGCTGTTGCTCTTCCCATG+TGG | + | chr6_2:80044176-80044195 | Msa0930920:intron | 50.0% | |
| TTGCTCTTCCCATGTGGAGT+GGG | + | chr6_2:80044182-80044201 | Msa0930920:intron | 50.0% | |
| CACGGATATGAGACTGGGAT+TGG | + | chr6_2:80047431-80047450 | Msa0930920:CDS | 50.0% | |
| GTTCACGCTGTTCTCGTAGG+CGG | - | chr6_2:80043040-80043059 | None:intergenic | 55.0% | |
| AGTTTCCGACTCAGCAGAGC+CGG | - | chr6_2:80043124-80043143 | None:intergenic | 55.0% | |
| CGCCACACCCTGAAAATCCT+CGG | - | chr6_2:80043451-80043470 | None:intergenic | 55.0% | |
| CGGAGTGTGGGGATTCTACT+TGG | + | chr6_2:80043541-80043560 | Msa0930920:CDS | 55.0% | |
| ACGCGAGTGATCTCCACCTT+CGG | - | chr6_2:80043604-80043623 | None:intergenic | 55.0% | |
| GTTGCTCTTCCCATGTGGAG+TGG | + | chr6_2:80044181-80044200 | Msa0930920:intron | 55.0% | |
| CTTCCCATGTGGAGTGGGTA+TGG | + | chr6_2:80044187-80044206 | Msa0930920:intron | 55.0% | |
| CCTCCATACCCACTCCACAT+GGG | - | chr6_2:80044193-80044212 | None:intergenic | 55.0% | |
| ACCTCCATACCCACTCCACA+TGG | - | chr6_2:80044194-80044213 | None:intergenic | 55.0% | |
| ATGTGGAGTGGGTATGGAGG+TGG | + | chr6_2:80044193-80044212 | Msa0930920:intron | 55.0% | |
| TGTGGAGTGGGTATGGAGGT+GGG | + | chr6_2:80044194-80044213 | Msa0930920:intron | 55.0% | |
| GGGAGCCGTAGGATATGGAT+TGG | - | chr6_2:80046896-80046915 | None:intergenic | 55.0% | |
| CAAACGGGAGCCGTAGGATA+TGG | - | chr6_2:80046901-80046920 | None:intergenic | 55.0% | |
| AACGAACAAACGGGAGCCGT+AGG | - | chr6_2:80046907-80046926 | None:intergenic | 55.0% | |
| CAACCTCTAGCTATGGCCTC+CGG | + | chr6_2:80047407-80047426 | Msa0930920:CDS | 55.0% | |
| AGTCTCATATCCGTGACCGG+AGG | - | chr6_2:80047426-80047445 | None:intergenic | 55.0% | |
| TCCGGTCACGGATATGAGAC+TGG | + | chr6_2:80047425-80047444 | Msa0930920:CDS | 55.0% | |
| CCCAGTCTCATATCCGTGAC+CGG | - | chr6_2:80047429-80047448 | None:intergenic | 55.0% | |
| CCGGTCACGGATATGAGACT+GGG | + | chr6_2:80047426-80047445 | Msa0930920:CDS | 55.0% | |
| GGGATTGGGAATGAGCTGCT+TGG | + | chr6_2:80047446-80047465 | Msa0930920:CDS | 55.0% | |
| CTGTTCTCGTAGGCGGAACC+TGG | - | chr6_2:80043033-80043052 | None:intergenic | 60.0% | |
| AGTTCCCGGCTCTGCTGAGT+CGG | + | chr6_2:80043116-80043135 | Msa0930920:CDS | 60.0% | |
| GTTTCCGACTCAGCAGAGCC+GGG | - | chr6_2:80043123-80043142 | None:intergenic | 60.0% | |
| TACGGCCTTTCTCAGTGCCG+TGG | + | chr6_2:80043147-80043166 | Msa0930920:CDS | 60.0% | |
| ! | GGTCACCACGGCACTGAGAA+AGG | - | chr6_2:80043155-80043174 | None:intergenic | 60.0% |
| ! | TCCCGAGTTGACTCACCGCA+CGG | - | chr6_2:80043209-80043228 | None:intergenic | 60.0% |
| TCAGGGTGTGGCGCAGTGTA+CGG | + | chr6_2:80043458-80043477 | Msa0930920:CDS | 60.0% | |
| GAAGGTGGAGATCACTCGCG+TGG | + | chr6_2:80043603-80043622 | Msa0930920:CDS | 60.0% | |
| CCCATGTGGAGTGGGTATGG+AGG | + | chr6_2:80044190-80044209 | Msa0930920:intron | 60.0% | |
| AGTGGGTATGGAGGTGGGTG+TGG | + | chr6_2:80044199-80044218 | Msa0930920:intron | 60.0% | |
| TGACCGGAGGCCATAGCTAG+AGG | - | chr6_2:80047413-80047432 | None:intergenic | 60.0% | |
| CTAGCTATGGCCTCCGGTCA+CGG | + | chr6_2:80047413-80047432 | Msa0930920:CDS | 60.0% | |
| TTCACGTTGCGTGGCCCGTG+CGG | + | chr6_2:80043191-80043210 | Msa0930920:CDS | 65.0% | |
| GCCCGTGCGGTGAGTCAACT+CGG | + | chr6_2:80043204-80043223 | Msa0930920:CDS | 65.0% | |
| ! | CCCGAGTTGACTCACCGCAC+GGG | - | chr6_2:80043208-80043227 | None:intergenic | 65.0% |
| CCCGTGCGGTGAGTCAACTC+GGG | + | chr6_2:80043205-80043224 | Msa0930920:CDS | 65.0% | |
| AAGCTGCAACGCGCCACCGT+AGG | - | chr6_2:80043247-80043266 | None:intergenic | 65.0% | |
| GGTGGCGCGTTGCAGCTTGA+AGG | + | chr6_2:80043249-80043268 | Msa0930920:CDS | 65.0% | |
| CAGGGTGTGGCGCAGTGTAC+GGG | + | chr6_2:80043459-80043478 | Msa0930920:CDS | 65.0% | |
| AGGGTGTGGCGCAGTGTACG+GGG | + | chr6_2:80043460-80043479 | Msa0930920:CDS | 65.0% | |
| GGGTGTGGCGCAGTGTACGG+GGG | + | chr6_2:80043461-80043480 | Msa0930920:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 80042719 | 80047550 | 80042719 | ID=Msa0930920;Name=Msa0930920 |
| chr6_2 | mRNA | 80042719 | 80047550 | 80042719 | ID=Msa0930920-mRNA-1;Parent=Msa0930920;Name=Msa0930920-mRNA-1;_AED=0.21;_eAED=0.21;_QI=176|0.33|0.25|0.75|0.66|0.75|4|0|366 |
| chr6_2 | exon | 80042719 | 80043636 | 80042719 | ID=Msa0930920-mRNA-1:exon:13983;Parent=Msa0930920-mRNA-1 |
| chr6_2 | exon | 80045139 | 80045269 | 80045139 | ID=Msa0930920-mRNA-1:exon:13984;Parent=Msa0930920-mRNA-1 |
| chr6_2 | exon | 80045365 | 80045428 | 80045365 | ID=Msa0930920-mRNA-1:exon:13985;Parent=Msa0930920-mRNA-1 |
| chr6_2 | exon | 80047387 | 80047550 | 80047387 | ID=Msa0930920-mRNA-1:exon:13986;Parent=Msa0930920-mRNA-1 |
| chr6_2 | five_prime_UTR | 80042719 | 80042894 | 80042719 | ID=Msa0930920-mRNA-1:five_prime_utr;Parent=Msa0930920-mRNA-1 |
| chr6_2 | CDS | 80042895 | 80043636 | 80042895 | ID=Msa0930920-mRNA-1:cds;Parent=Msa0930920-mRNA-1 |
| chr6_2 | CDS | 80045139 | 80045269 | 80045139 | ID=Msa0930920-mRNA-1:cds;Parent=Msa0930920-mRNA-1 |
| chr6_2 | CDS | 80045365 | 80045428 | 80045365 | ID=Msa0930920-mRNA-1:cds;Parent=Msa0930920-mRNA-1 |
| chr6_2 | CDS | 80047387 | 80047550 | 80047387 | ID=Msa0930920-mRNA-1:cds;Parent=Msa0930920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
