Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349890 | XP_003630918.2 | 94.828 | 290 | 14 | 1 | 6 | 294 | 2 | 291 | 2.31e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349890 | sp|Q9ZU94|PDLP6_ARATH | 57.586 | 290 | 113 | 5 | 10 | 294 | 4 | 288 | 7.79e-111 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349890 | I3T3Y9 | 94.828 | 290 | 14 | 1 | 6 | 294 | 2 | 291 | 1.10e-179 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741220 | Msa1349890 | 0.801920 | 7.168894e-49 | -8.615850e-47 |
| Msa0243600 | Msa1349890 | 0.800674 | 1.289844e-48 | -8.615850e-47 |
| Msa0557460 | Msa1349890 | 0.811230 | 7.768438e-51 | -8.615850e-47 |
| Msa0930920 | Msa1349890 | 0.917546 | 4.656543e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349890 | MtrunA17_Chr8g0391511 | 94.828 | 290 | 14 | 1 | 6 | 294 | 2 | 291 | 0.0 | 506 |
| Msa1349890 | MtrunA17_Chr5g0434531 | 48.582 | 282 | 136 | 4 | 12 | 290 | 1 | 276 | 2.78e-88 | 265 |
| Msa1349890 | MtrunA17_Chr3g0110311 | 46.786 | 280 | 135 | 4 | 11 | 290 | 9 | 274 | 1.04e-85 | 258 |
| Msa1349890 | MtrunA17_Chr7g0230381 | 36.667 | 270 | 147 | 6 | 11 | 269 | 12 | 268 | 4.39e-55 | 179 |
| Msa1349890 | MtrunA17_Chr1g0168311 | 30.662 | 287 | 184 | 7 | 14 | 290 | 8 | 289 | 2.49e-35 | 129 |
| Msa1349890 | MtrunA17_Chr1g0186151 | 28.623 | 276 | 183 | 3 | 29 | 292 | 26 | 299 | 2.00e-29 | 114 |
| Msa1349890 | MtrunA17_Chr7g0262011 | 27.758 | 281 | 196 | 4 | 16 | 294 | 83 | 358 | 1.35e-27 | 109 |
| Msa1349890 | MtrunA17_Chr1g0190321 | 27.758 | 281 | 176 | 11 | 15 | 280 | 17 | 285 | 8.60e-22 | 92.8 |
| Msa1349890 | MtrunA17_Chr1g0206291 | 26.778 | 239 | 162 | 5 | 12 | 237 | 20 | 258 | 3.68e-18 | 84.3 |
| Msa1349890 | MtrunA17_Chr1g0205771 | 24.910 | 277 | 189 | 7 | 35 | 294 | 39 | 313 | 2.47e-17 | 82.0 |
| Msa1349890 | MtrunA17_Chr6g0475121 | 28.033 | 239 | 153 | 5 | 12 | 237 | 12 | 244 | 4.43e-17 | 81.3 |
| Msa1349890 | MtrunA17_Chr6g0475121 | 27.778 | 180 | 108 | 5 | 81 | 238 | 192 | 371 | 1.34e-12 | 67.8 |
| Msa1349890 | MtrunA17_Chr8g0354341 | 26.633 | 199 | 137 | 3 | 50 | 239 | 43 | 241 | 6.43e-17 | 79.0 |
| Msa1349890 | MtrunA17_Chr6g0475001 | 25.714 | 245 | 156 | 5 | 13 | 237 | 6 | 244 | 1.01e-16 | 80.5 |
| Msa1349890 | MtrunA17_Chr6g0475001 | 25.967 | 181 | 112 | 5 | 81 | 239 | 192 | 372 | 7.41e-12 | 65.9 |
| Msa1349890 | MtrunA17_Chr6g0474901 | 28.095 | 210 | 138 | 3 | 41 | 237 | 28 | 237 | 3.66e-16 | 79.0 |
| Msa1349890 | MtrunA17_Chr6g0474901 | 25.543 | 184 | 109 | 4 | 81 | 239 | 185 | 365 | 3.75e-11 | 63.5 |
| Msa1349890 | MtrunA17_Chr6g0475201 | 26.556 | 241 | 162 | 5 | 10 | 237 | 5 | 243 | 4.44e-16 | 78.6 |
| Msa1349890 | MtrunA17_Chr6g0475201 | 28.177 | 181 | 107 | 5 | 81 | 238 | 191 | 371 | 4.45e-13 | 69.7 |
| Msa1349890 | MtrunA17_Chr2g0323011 | 25.926 | 243 | 157 | 7 | 10 | 237 | 4 | 238 | 4.52e-16 | 76.3 |
| Msa1349890 | MtrunA17_Chr8g0354351 | 22.222 | 243 | 160 | 5 | 12 | 239 | 10 | 238 | 2.17e-15 | 76.3 |
| Msa1349890 | MtrunA17_Chr7g0234231 | 26.800 | 250 | 138 | 9 | 14 | 237 | 1 | 231 | 2.83e-15 | 73.9 |
| Msa1349890 | MtrunA17_Chr1g0206351 | 29.167 | 216 | 139 | 5 | 35 | 237 | 33 | 247 | 3.59e-15 | 75.9 |
| Msa1349890 | MtrunA17_Chr7g0226901 | 25.105 | 239 | 167 | 6 | 3 | 238 | 2 | 231 | 4.01e-15 | 73.9 |
| Msa1349890 | MtrunA17_Chr2g0322981 | 25.352 | 213 | 144 | 6 | 37 | 237 | 29 | 238 | 7.93e-15 | 72.4 |
| Msa1349890 | MtrunA17_Chr4g0058891 | 30.601 | 183 | 116 | 6 | 84 | 264 | 80 | 253 | 3.84e-14 | 72.4 |
| Msa1349890 | MtrunA17_Chr5g0394001 | 28.571 | 203 | 134 | 4 | 46 | 237 | 41 | 243 | 4.04e-14 | 72.4 |
| Msa1349890 | MtrunA17_Chr6g0474811 | 25.000 | 244 | 160 | 6 | 13 | 237 | 6 | 245 | 4.64e-14 | 72.4 |
| Msa1349890 | MtrunA17_Chr6g0474811 | 25.521 | 192 | 120 | 4 | 71 | 239 | 183 | 374 | 3.04e-13 | 70.1 |
| Msa1349890 | MtrunA17_Chr3g0109411 | 27.570 | 214 | 144 | 5 | 35 | 239 | 28 | 239 | 4.73e-14 | 72.4 |
| Msa1349890 | MtrunA17_Chr3g0081001 | 21.774 | 248 | 170 | 3 | 8 | 239 | 2 | 241 | 4.97e-14 | 72.4 |
| Msa1349890 | MtrunA17_Chr6g0474971 | 27.451 | 204 | 131 | 5 | 49 | 237 | 36 | 237 | 8.65e-14 | 70.5 |
| Msa1349890 | MtrunA17_Chr6g0474871 | 26.050 | 238 | 162 | 5 | 13 | 237 | 6 | 242 | 1.29e-13 | 71.2 |
| Msa1349890 | MtrunA17_Chr1g0206331 | 24.380 | 242 | 161 | 8 | 13 | 237 | 10 | 246 | 2.21e-13 | 70.5 |
| Msa1349890 | MtrunA17_Chr1g0206531 | 25.210 | 238 | 154 | 7 | 16 | 237 | 15 | 244 | 2.80e-13 | 70.1 |
| Msa1349890 | MtrunA17_Chr1g0206361 | 22.593 | 270 | 173 | 5 | 46 | 290 | 47 | 305 | 5.79e-13 | 68.9 |
| Msa1349890 | MtrunA17_Chr3g0119041 | 27.541 | 305 | 187 | 13 | 17 | 294 | 10 | 307 | 1.13e-12 | 68.2 |
| Msa1349890 | MtrunA17_Chr6g0474861 | 24.885 | 217 | 141 | 6 | 13 | 215 | 6 | 214 | 1.18e-12 | 68.2 |
| Msa1349890 | MtrunA17_Chr5g0428531 | 25.000 | 248 | 146 | 9 | 15 | 237 | 9 | 241 | 1.33e-12 | 67.0 |
| Msa1349890 | MtrunA17_Chr1g0154351 | 23.415 | 205 | 143 | 4 | 46 | 237 | 42 | 245 | 7.73e-12 | 65.9 |
| Msa1349890 | MtrunA17_Chr1g0206461 | 22.917 | 240 | 174 | 4 | 8 | 237 | 3 | 241 | 8.74e-12 | 65.5 |
| Msa1349890 | MtrunA17_Chr8g0354271 | 27.053 | 207 | 124 | 5 | 50 | 239 | 48 | 244 | 9.52e-12 | 65.5 |
| Msa1349890 | MtrunA17_Chr1g0206571 | 24.762 | 210 | 139 | 6 | 43 | 237 | 45 | 250 | 1.60e-11 | 63.9 |
| Msa1349890 | MtrunA17_Chr8g0347571 | 23.009 | 226 | 153 | 4 | 85 | 294 | 317 | 537 | 1.86e-11 | 64.7 |
| Msa1349890 | MtrunA17_Chr8g0347571 | 24.167 | 240 | 157 | 7 | 13 | 237 | 7 | 236 | 7.50e-11 | 62.8 |
| Msa1349890 | MtrunA17_Chr1g0154311 | 22.066 | 213 | 142 | 5 | 42 | 237 | 40 | 245 | 1.98e-11 | 64.3 |
| Msa1349890 | MtrunA17_Chr6g0475111 | 25.630 | 238 | 144 | 7 | 81 | 294 | 326 | 554 | 3.23e-11 | 63.9 |
| Msa1349890 | MtrunA17_Chr6g0475091 | 24.000 | 225 | 150 | 5 | 84 | 291 | 330 | 550 | 4.48e-11 | 63.5 |
| Msa1349890 | MtrunA17_Chr3g0081011 | 23.469 | 196 | 144 | 1 | 50 | 239 | 45 | 240 | 7.06e-11 | 62.8 |
| Msa1349890 | MtrunA17_Chr8g0354281 | 22.545 | 275 | 179 | 10 | 28 | 276 | 21 | 287 | 8.68e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349890 | AT2G01660.1 | 57.586 | 290 | 113 | 5 | 10 | 294 | 4 | 288 | 7.92e-112 | 325 |
| Msa1349890 | AT2G01660.3 | 57.292 | 288 | 113 | 5 | 10 | 292 | 4 | 286 | 2.78e-110 | 321 |
| Msa1349890 | AT5G37660.1 | 54.671 | 289 | 118 | 6 | 11 | 294 | 8 | 288 | 8.99e-93 | 276 |
| Msa1349890 | AT5G37660.2 | 54.887 | 266 | 109 | 5 | 11 | 271 | 8 | 267 | 3.46e-92 | 275 |
| Msa1349890 | AT2G01660.2 | 57.741 | 239 | 93 | 4 | 10 | 245 | 4 | 237 | 8.78e-91 | 270 |
| Msa1349890 | AT1G70690.1 | 46.392 | 291 | 142 | 6 | 10 | 289 | 4 | 291 | 9.52e-77 | 236 |
| Msa1349890 | AT3G60720.1 | 39.062 | 256 | 144 | 4 | 32 | 282 | 25 | 273 | 2.07e-55 | 181 |
| Msa1349890 | AT3G60720.3 | 39.062 | 256 | 144 | 4 | 32 | 282 | 25 | 273 | 2.63e-55 | 181 |
| Msa1349890 | AT3G60720.2 | 40.465 | 215 | 120 | 3 | 32 | 241 | 25 | 236 | 8.39e-47 | 157 |
| Msa1349890 | AT2G33330.1 | 29.352 | 293 | 190 | 5 | 14 | 290 | 9 | 300 | 1.31e-31 | 119 |
| Msa1349890 | AT1G04520.1 | 28.188 | 298 | 195 | 5 | 11 | 291 | 9 | 304 | 9.99e-30 | 114 |
| Msa1349890 | AT5G43980.1 | 28.520 | 277 | 176 | 7 | 32 | 290 | 24 | 296 | 7.95e-23 | 96.3 |
| Msa1349890 | AT1G63580.1 | 23.913 | 276 | 183 | 6 | 14 | 273 | 9 | 273 | 1.07e-17 | 81.6 |
| Msa1349890 | AT1G63550.1 | 26.728 | 217 | 138 | 6 | 37 | 237 | 32 | 243 | 6.60e-17 | 80.1 |
| Msa1349890 | AT5G48540.1 | 27.941 | 204 | 131 | 4 | 47 | 237 | 35 | 235 | 8.66e-17 | 79.0 |
| Msa1349890 | AT1G63590.1 | 26.761 | 213 | 138 | 5 | 41 | 237 | 33 | 243 | 2.17e-16 | 77.8 |
| Msa1349890 | AT5G41290.1 | 27.861 | 201 | 131 | 4 | 49 | 237 | 43 | 241 | 3.30e-16 | 77.4 |
| Msa1349890 | AT3G21990.1 | 26.141 | 241 | 160 | 6 | 13 | 237 | 10 | 248 | 8.45e-16 | 75.9 |
| Msa1349890 | AT1G63600.1 | 26.389 | 216 | 136 | 5 | 41 | 237 | 40 | 251 | 7.48e-15 | 74.3 |
| Msa1349890 | AT1G63570.3 | 27.751 | 209 | 137 | 3 | 41 | 237 | 33 | 239 | 3.81e-14 | 71.6 |
| Msa1349890 | AT1G63570.1 | 27.751 | 209 | 137 | 3 | 41 | 237 | 33 | 239 | 3.81e-14 | 71.6 |
| Msa1349890 | AT1G63570.2 | 27.751 | 209 | 137 | 3 | 41 | 237 | 86 | 292 | 7.28e-14 | 71.2 |
| Msa1349890 | AT1G61750.1 | 24.257 | 202 | 142 | 4 | 46 | 237 | 40 | 240 | 1.55e-13 | 70.5 |
| Msa1349890 | AT3G04370.2 | 24.138 | 319 | 196 | 10 | 12 | 289 | 1 | 314 | 1.55e-13 | 70.1 |
| Msa1349890 | AT3G04370.1 | 24.062 | 320 | 196 | 10 | 12 | 289 | 1 | 315 | 2.28e-13 | 69.7 |
| Msa1349890 | AT5G41280.1 | 25.431 | 232 | 158 | 6 | 61 | 280 | 56 | 284 | 2.31e-13 | 69.3 |
| Msa1349890 | AT3G22060.1 | 26.033 | 242 | 158 | 7 | 12 | 237 | 7 | 243 | 2.70e-13 | 68.6 |
| Msa1349890 | AT3G58310.1 | 27.126 | 247 | 149 | 9 | 9 | 237 | 15 | 248 | 3.33e-13 | 68.6 |
| Msa1349890 | AT4G05200.1 | 25.000 | 236 | 161 | 4 | 14 | 237 | 11 | 242 | 1.34e-12 | 68.6 |
| Msa1349890 | AT4G05200.2 | 25.000 | 236 | 161 | 4 | 14 | 237 | 29 | 260 | 1.36e-12 | 68.6 |
| Msa1349890 | AT5G41300.1 | 22.222 | 243 | 175 | 5 | 49 | 279 | 47 | 287 | 2.07e-12 | 66.6 |
| Msa1349890 | AT1G70530.1 | 28.194 | 227 | 140 | 10 | 85 | 294 | 75 | 295 | 1.16e-11 | 65.5 |
| Msa1349890 | AT1G70530.3 | 28.194 | 227 | 140 | 10 | 85 | 294 | 75 | 295 | 1.52e-11 | 65.1 |
| Msa1349890 | AT1G70530.2 | 28.194 | 227 | 140 | 10 | 85 | 294 | 75 | 295 | 1.56e-11 | 65.1 |
Find 92 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTGGGGTGATATGTATT+TGG | 0.196751 | tig0011086:-69375 | Msa1349890:CDS |
| CAAATAATAACATAAATAAA+TGG | 0.232216 | tig0011086:+67012 | None:intergenic |
| CTGGTAAATTATTTGTCTTT+TGG | 0.254313 | tig0011086:-67432 | Msa1349890:three_prime_UTR |
| TGATCAATACCCATTATTAA+AGG | 0.289069 | tig0011086:+67161 | None:intergenic |
| CAGGGTGTGGCGCAGTGTAC+GGG | 0.291220 | tig0011086:-69473 | Msa1349890:CDS |
| AAGACACTAGCCATACTAAT+TGG | 0.326123 | tig0011086:-67689 | Msa1349890:CDS |
| TCAGGGTGTGGCGCAGTGTA+CGG | 0.328071 | tig0011086:-69474 | Msa1349890:CDS |
| ATGTTATAGCCTTTAATAAT+GGG | 0.334716 | tig0011086:-67170 | Msa1349890:three_prime_UTR |
| TCACTGGCAATCTTTATAGA+AGG | 0.334940 | tig0011086:+67354 | None:intergenic |
| TATGTTATAGCCTTTAATAA+TGG | 0.346442 | tig0011086:-67171 | Msa1349890:three_prime_UTR |
| TTACAGAATGAGTTACAATA+AGG | 0.346940 | tig0011086:-67281 | Msa1349890:three_prime_UTR |
| CTTCGGATGCGTTTACTAGA+AGG | 0.352140 | tig0011086:-69571 | Msa1349890:CDS |
| TACAACAATTTCACAGTTCC+CGG | 0.356273 | tig0011086:-69830 | Msa1349890:CDS |
| CGGAGTGTGGGGATTCTACT+TGG | 0.371257 | tig0011086:-69391 | Msa1349890:CDS |
| AATGTTACGTGGATAGTAAT+AGG | 0.404096 | tig0011086:-67480 | Msa1349890:three_prime_UTR |
| AGCAATGAGTCCAATTAGTA+TGG | 0.405107 | tig0011086:+67679 | None:intergenic |
| ATACTAATTGGACTCATTGC+TGG | 0.415948 | tig0011086:-67677 | Msa1349890:CDS |
| GTGAACATTGATCATTGTTA+AGG | 0.420980 | tig0011086:+69759 | None:intergenic |
| GACACAAACTCTTTCATCTT+CGG | 0.422632 | tig0011086:-69950 | Msa1349890:CDS |
| GCCCGTGCGGTGAGTCAACT+CGG | 0.442965 | tig0011086:-69728 | Msa1349890:CDS |
| GGTGGCGCGTTGCAGCTTGA+AGG | 0.451042 | tig0011086:-69683 | Msa1349890:CDS |
| TTTGATCTCTAGTAAGTGTC+AGG | 0.454235 | tig0011086:-69447 | Msa1349890:CDS |
| TTCACAAAGCTTGGACAAGA+AGG | 0.456635 | tig0011086:+67628 | None:intergenic |
| TATATTATATATAGCTTCAC+TGG | 0.457390 | tig0011086:+67338 | None:intergenic |
| TTTATAGAAGGGAATTGTGC+TGG | 0.461762 | tig0011086:+67366 | None:intergenic |
| AAATAATAACATAAATAAAT+GGG | 0.463734 | tig0011086:+67013 | None:intergenic |
| AGTTTCCGACTCAGCAGAGC+CGG | 0.468190 | tig0011086:+69811 | None:intergenic |
| AAGAAATGTGGACCGTCGAT+TGG | 0.471308 | tig0011086:-69599 | Msa1349890:CDS |
| CTGTTCTCGTAGGCGGAACC+TGG | 0.474749 | tig0011086:+69902 | None:intergenic |
| ATAATTTACCAGAGAAAAGC+AGG | 0.475620 | tig0011086:+67443 | None:intergenic |
| GAAATTGTTGTAGTTTGAAA+AGG | 0.487310 | tig0011086:+69841 | None:intergenic |
| AGAAATGTGGACCGTCGATT+GGG | 0.492354 | tig0011086:-69598 | Msa1349890:CDS |
| ATTATTAAAGGCTATAACAT+AGG | 0.494608 | tig0011086:+67173 | None:intergenic |
| GAGTTTGTGTCAGAGAATGA+AGG | 0.495190 | tig0011086:+69962 | None:intergenic |
| AGGGTGTGGCGCAGTGTACG+GGG | 0.495239 | tig0011086:-69472 | Msa1349890:CDS |
| GGTCACCACGGCACTGAGAA+AGG | 0.496220 | tig0011086:+69780 | None:intergenic |
| ATTGGACTCATTGCTGGTGT+TGG | 0.497608 | tig0011086:-67671 | Msa1349890:CDS |
| GGCAATCCAACGGTTGAAAA+CGG | 0.500751 | tig0011086:-69411 | Msa1349890:CDS |
| GGAGTGTGGGGATTCTACTT+GGG | 0.507307 | tig0011086:-69390 | Msa1349890:CDS |
| CGCCACACCCTGAAAATCCT+CGG | 0.524752 | tig0011086:+69484 | None:intergenic |
| ACAAACTCTTTCATCTTCGG+TGG | 0.531696 | tig0011086:-69947 | Msa1349890:CDS |
| AGTTCCCGGCTCTGCTGAGT+CGG | 0.535502 | tig0011086:-69816 | Msa1349890:CDS |
| AGTTTGTGTCAGAGAATGAA+GGG | 0.536019 | tig0011086:+69963 | None:intergenic |
| GTGTCAGAGAATGAAGGGAT+TGG | 0.537658 | tig0011086:+69968 | None:intergenic |
| AACGGTTGAAAACGGAGTGT+GGG | 0.539343 | tig0011086:-69403 | Msa1349890:CDS |
| CACTGGCAATCTTTATAGAA+GGG | 0.542062 | tig0011086:+67355 | None:intergenic |
| CACTCGCGTGGTAGTAATAA+CGG | 0.542277 | tig0011086:-69317 | Msa1349890:intron |
| GACAAAGTAAATAAAGAGAG+TGG | 0.542876 | tig0011086:+67242 | None:intergenic |
| CTTAAAGAAGAATTAACGTA+AGG | 0.547337 | tig0011086:+70145 | None:intergenic |
| TTCGGATGCGTTTACTAGAA+GGG | 0.549399 | tig0011086:-69570 | Msa1349890:CDS |
| TGCTCACTATTTATACACAT+TGG | 0.550950 | tig0011086:+67217 | None:intergenic |
| ACGCGAGTGATCTCCACCTT+CGG | 0.553618 | tig0011086:+69331 | None:intergenic |
| CAACGGTTGAAAACGGAGTG+TGG | 0.554354 | tig0011086:-69404 | Msa1349890:CDS |
| AAAGGCTGCTGAGTTGACTA+AGG | 0.558557 | tig0011086:+69859 | None:intergenic |
| TCACTATTTATACACATTGG+TGG | 0.559790 | tig0011086:+67220 | None:intergenic |
| ACAGAAGTGGTTAAGAAATG+TGG | 0.566487 | tig0011086:-69611 | Msa1349890:CDS |
| TCTCGTTTCAAATACTCACC+AGG | 0.573214 | tig0011086:-69920 | Msa1349890:CDS |
| TGATCAATGTTCACGTTGCG+TGG | 0.573628 | tig0011086:-69750 | Msa1349890:CDS |
| AAAATTCTTATAACCACCAT+CGG | 0.574694 | tig0011086:+69520 | None:intergenic |
| GTGTCAGGATTGTGTTTCTG+AGG | 0.575791 | tig0011086:-69432 | Msa1349890:CDS |
| ATATAGATAGAAAGATCTTG+TGG | 0.579589 | tig0011086:-67320 | Msa1349890:three_prime_UTR |
| CACAAACACAAACACAAACA+TGG | 0.583825 | tig0011086:-70029 | Msa1349890:CDS |
| TGAGTTCACGCTGTTCTCGT+AGG | 0.584005 | tig0011086:+69892 | None:intergenic |
| TGCTACGTGCGTTATTCCGA+AGG | 0.586039 | tig0011086:-69347 | Msa1349890:CDS |
| ACTTATTTACAGTCGTCCGA+TGG | 0.586949 | tig0011086:-69536 | Msa1349890:CDS |
| CCCGTGCGGTGAGTCAACTC+GGG | 0.587070 | tig0011086:-69727 | Msa1349890:CDS |
| GTTCACGCTGTTCTCGTAGG+CGG | 0.592613 | tig0011086:+69895 | None:intergenic |
| GTTTCCGACTCAGCAGAGCC+GGG | 0.593473 | tig0011086:+69812 | None:intergenic |
| AAGCTGCAACGCGCCACCGT+AGG | 0.595981 | tig0011086:+69688 | None:intergenic |
| ACCGTCGATTGGGTTGACTT+CGG | 0.598724 | tig0011086:-69588 | Msa1349890:CDS |
| GGGTGTGGCGCAGTGTACGG+GGG | 0.600102 | tig0011086:-69471 | Msa1349890:CDS |
| CCCGAGTTGACTCACCGCAC+GGG | 0.602553 | tig0011086:+69727 | None:intergenic |
| AGAGAATGAAGGGATTGGAA+TGG | 0.608644 | tig0011086:+69973 | None:intergenic |
| CTGAGTTGACTAAGGAAGTG+AGG | 0.611457 | tig0011086:+69867 | None:intergenic |
| ACACTATGTTTCGCTACCTA+CGG | 0.611535 | tig0011086:-69704 | Msa1349890:CDS |
| TCCGAAGTCAACCCAATCGA+CGG | 0.617909 | tig0011086:+69587 | None:intergenic |
| TATTTACAGTCGTCCGATGG+TGG | 0.619484 | tig0011086:-69533 | Msa1349890:CDS |
| ACGGTTGAAAACGGAGTGTG+GGG | 0.625310 | tig0011086:-69402 | Msa1349890:CDS |
| GAGTGTGGGGATTCTACTTG+GGG | 0.628812 | tig0011086:-69389 | Msa1349890:CDS |
| GTGTTTCTGAGGCAATCCAA+CGG | 0.629753 | tig0011086:-69421 | Msa1349890:CDS |
| GCTGAGTCGGAAACTGTGTA+CGG | 0.636728 | tig0011086:-69803 | Msa1349890:CDS |
| TTCACGTTGCGTGGCCCGTG+CGG | 0.637077 | tig0011086:-69741 | Msa1349890:CDS |
| ATTGTGCTGGAAACTTACAA+AGG | 0.657768 | tig0011086:+67379 | None:intergenic |
| TACGGCCTTTCTCAGTGCCG+TGG | 0.660453 | tig0011086:-69785 | Msa1349890:CDS |
| AGTACAAGACAAGACAGAAG+TGG | 0.676307 | tig0011086:-69624 | Msa1349890:CDS |
| TACGTGCGTTATTCCGAAGG+TGG | 0.683424 | tig0011086:-69344 | Msa1349890:CDS |
| GAAGGTGGAGATCACTCGCG+TGG | 0.691186 | tig0011086:-69329 | Msa1349890:CDS |
| TAATTTACCAGAGAAAAGCA+GGG | 0.696659 | tig0011086:+67444 | None:intergenic |
| GGTAAATAAAGAATGTTACG+TGG | 0.697240 | tig0011086:-67491 | Msa1349890:exon |
| CTATGTTTCGCTACCTACGG+TGG | 0.712114 | tig0011086:-69701 | Msa1349890:CDS |
| GATCATTGTTAAGGTCACCA+CGG | 0.720890 | tig0011086:+69768 | None:intergenic |
| AAGCTTTGTGAAAAGCAGAG+AGG | 0.747914 | tig0011086:-67617 | Msa1349890:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTATTTTTTTATT+TGG | + | tig0011086:69046-69065 | None:intergenic | 0.0% |
| !! | ATATATGTTAAAACTTAATA+CGG | + | tig0011086:68776-68795 | None:intergenic | 10.0% |
| !! | CAAATAATAACATAAATAAA+TGG | + | tig0011086:70219-70238 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAAATAACAAC+AGG | + | tig0011086:67954-67973 | None:intergenic | 15.0% |
| !!! | TACTTAAAATGAATGAATTT+TGG | + | tig0011086:68895-68914 | None:intergenic | 15.0% |
| !!! | TAAGTAATTGTTTTTCTAAA+AGG | - | tig0011086:68909-68928 | Msa1349890:intron | 15.0% |
| !!! | AAGTAATTGTTTTTCTAAAA+GGG | - | tig0011086:68910-68929 | Msa1349890:intron | 15.0% |
| !! | AAAAAGAGAATATATGATTG+TGG | + | tig0011086:67042-67061 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATAACAACAGG+AGG | + | tig0011086:67951-67970 | None:intergenic | 20.0% |
| !! | GTGATCAAACTTTATATTAT+TGG | + | tig0011086:67989-68008 | None:intergenic | 20.0% |
| !! | AAATATTGAATTCACAGTTA+TGG | - | tig0011086:68050-68069 | Msa1349890:intron | 20.0% |
| !! | TGGTCTAACAATTTAATTAA+GGG | - | tig0011086:68563-68582 | Msa1349890:intron | 20.0% |
| !! | TCAAATTACTGTAATTAGTT+GGG | - | tig0011086:68591-68610 | Msa1349890:intron | 20.0% |
| !!! | TTTTCATTAGTATTTGGATT+TGG | - | tig0011086:68665-68684 | Msa1349890:intron | 20.0% |
| !! | TTCTAATGTACTATATGTAT+TGG | + | tig0011086:68742-68761 | None:intergenic | 20.0% |
| !! | TTAAAACTTAATACGGATAA+TGG | + | tig0011086:68769-68788 | None:intergenic | 20.0% |
| !! | ATATGTTATATGATCTATGA+TGG | - | tig0011086:68807-68826 | Msa1349890:intron | 20.0% |
| !! | TAGAGATTAAAGAATACAAA+AGG | + | tig0011086:68971-68990 | None:intergenic | 20.0% |
| !!! | AATATTTTACATTAGCTTTG+TGG | - | tig0011086:69060-69079 | Msa1349890:intron | 20.0% |
| !! | GTATAAGACAAAATGAAATT+CGG | + | tig0011086:69397-69416 | None:intergenic | 20.0% |
| !! | TTGAAATTGCATAGAAATAA+AGG | + | tig0011086:69654-69673 | None:intergenic | 20.0% |
| !! | AAAGGATTCAATACAAAAAA+GGG | + | tig0011086:69834-69853 | None:intergenic | 20.0% |
| !! | TATATTATATATAGCTTCAC+TGG | + | tig0011086:69893-69912 | None:intergenic | 20.0% |
| !! | ATTATTAAAGGCTATAACAT+AGG | + | tig0011086:70058-70077 | None:intergenic | 20.0% |
| !! | TATGTTATAGCCTTTAATAA+TGG | - | tig0011086:70057-70076 | Msa1349890:exon | 20.0% |
| !! | ATGTTATAGCCTTTAATAAT+GGG | - | tig0011086:70058-70077 | Msa1349890:exon | 20.0% |
| !!! | TCTTAATCTAACTTTTTGAA+TGG | + | tig0011086:70163-70182 | None:intergenic | 20.0% |
| ! | CTTAAAGAAGAATTAACGTA+AGG | + | tig0011086:67086-67105 | None:intergenic | 25.0% |
| ! | GAAATTGTTGTAGTTTGAAA+AGG | + | tig0011086:67390-67409 | None:intergenic | 25.0% |
| !!! | TACGATAATCTTTCGTTTTT+TGG | - | tig0011086:67581-67600 | Msa1349890:intron | 25.0% |
| ! | AAAATTCTTATAACCACCAT+CGG | + | tig0011086:67711-67730 | None:intergenic | 25.0% |
| !! | ATGGTGGTTATAAGAATTTT+AGG | - | tig0011086:67711-67730 | Msa1349890:CDS | 25.0% |
| !!! | TTTTTTACCCCTAATTAAAC+TGG | - | tig0011086:68543-68562 | Msa1349890:intron | 25.0% |
| ! | TTGTTAGACCAGTTTAATTA+GGG | + | tig0011086:68554-68573 | None:intergenic | 25.0% |
| ! | ATTGTTAGACCAGTTTAATT+AGG | + | tig0011086:68555-68574 | None:intergenic | 25.0% |
| ! | CTGGTCTAACAATTTAATTA+AGG | - | tig0011086:68562-68581 | Msa1349890:intron | 25.0% |
| ! | CTCAAATTACTGTAATTAGT+TGG | - | tig0011086:68590-68609 | Msa1349890:intron | 25.0% |
| ! | ATTAAAGAATACAAAAGGCA+TGG | + | tig0011086:68966-68985 | None:intergenic | 25.0% |
| ! | GTTTCTTCATTAATTCAAAG+CGG | + | tig0011086:69138-69157 | None:intergenic | 25.0% |
| ! | AAATACTAGGTATCATTTCA+TGG | + | tig0011086:69185-69204 | None:intergenic | 25.0% |
| ! | TAGGAGAAATGATAAATACT+AGG | + | tig0011086:69198-69217 | None:intergenic | 25.0% |
| ! | ATTTGAAAATTATTGAGCCT+GGG | + | tig0011086:69276-69295 | None:intergenic | 25.0% |
| ! | TATTTGAAAATTATTGAGCC+TGG | + | tig0011086:69277-69296 | None:intergenic | 25.0% |
| !!! | CTTGAAATGCTGTTTAATTT+TGG | - | tig0011086:69463-69482 | Msa1349890:CDS | 25.0% |
| !! | CTGGTAAATTATTTGTCTTT+TGG | - | tig0011086:69796-69815 | Msa1349890:CDS | 25.0% |
| !! | GTAAATTATTTGTCTTTTGG+TGG | - | tig0011086:69799-69818 | Msa1349890:CDS | 25.0% |
| ! | CAAAGGATTCAATACAAAAA+AGG | + | tig0011086:69835-69854 | None:intergenic | 25.0% |
| ! | ATATAGATAGAAAGATCTTG+TGG | - | tig0011086:69908-69927 | Msa1349890:CDS | 25.0% |
| ! | TTACAGAATGAGTTACAATA+AGG | - | tig0011086:69947-69966 | Msa1349890:CDS | 25.0% |
| ! | TGATCAATACCCATTATTAA+AGG | + | tig0011086:70070-70089 | None:intergenic | 25.0% |
| GTGAACATTGATCATTGTTA+AGG | + | tig0011086:67472-67491 | None:intergenic | 30.0% | |
| GATTGTCTATCTCAACTATT+TGG | - | tig0011086:68081-68100 | Msa1349890:intron | 30.0% | |
| TTGAAGAGAACATTAACAAG+TGG | - | tig0011086:68192-68211 | Msa1349890:intron | 30.0% | |
| TATCATACAAAAGCAAAACG+AGG | + | tig0011086:68356-68375 | None:intergenic | 30.0% | |
| TGTTAGACCAGTTTAATTAG+GGG | + | tig0011086:68553-68572 | None:intergenic | 30.0% | |
| ! | TTTTACGAGTTTTTTGTTGC+TGG | - | tig0011086:68624-68643 | Msa1349890:intron | 30.0% |
| TTGCTGGTAAATACTTTGTT+GGG | - | tig0011086:68640-68659 | Msa1349890:intron | 30.0% | |
| ! | TGGGTGTTTTCATTAGTATT+TGG | - | tig0011086:68659-68678 | Msa1349890:intron | 30.0% |
| ! | TTATTCTTTTTGCTCAGCAA+AGG | - | tig0011086:69001-69020 | Msa1349890:intron | 30.0% |
| !! | TTTACATTAGCTTTGTGGAA+AGG | - | tig0011086:69065-69084 | Msa1349890:intron | 30.0% |
| !! | TCTGCTTTTCAGACATTATT+AGG | + | tig0011086:69217-69236 | None:intergenic | 30.0% |
| GAAATTCGGTTCAACTTATA+AGG | + | tig0011086:69383-69402 | None:intergenic | 30.0% | |
| GGTAAATAAAGAATGTTACG+TGG | - | tig0011086:69737-69756 | Msa1349890:CDS | 30.0% | |
| AATGTTACGTGGATAGTAAT+AGG | - | tig0011086:69748-69767 | Msa1349890:CDS | 30.0% | |
| TAATTTACCAGAGAAAAGCA+GGG | + | tig0011086:69787-69806 | None:intergenic | 30.0% | |
| ATAATTTACCAGAGAAAAGC+AGG | + | tig0011086:69788-69807 | None:intergenic | 30.0% | |
| CAATACAAAAAAGGGAAAGA+TGG | + | tig0011086:69826-69845 | None:intergenic | 30.0% | |
| GACAAAGTAAATAAAGAGAG+TGG | + | tig0011086:69989-70008 | None:intergenic | 30.0% | |
| TCACTATTTATACACATTGG+TGG | + | tig0011086:70011-70030 | None:intergenic | 30.0% | |
| TGCTCACTATTTATACACAT+TGG | + | tig0011086:70014-70033 | None:intergenic | 30.0% | |
| CACAAACACAAACACAAACA+TGG | - | tig0011086:67199-67218 | Msa1349890:three_prime_UTR | 35.0% | |
| AGTTTGTGTCAGAGAATGAA+GGG | + | tig0011086:67268-67287 | None:intergenic | 35.0% | |
| GACACAAACTCTTTCATCTT+CGG | - | tig0011086:67278-67297 | Msa1349890:three_prime_UTR | 35.0% | |
| TACAACAATTTCACAGTTCC+CGG | - | tig0011086:67398-67417 | Msa1349890:three_prime_UTR | 35.0% | |
| ACAGAAGTGGTTAAGAAATG+TGG | - | tig0011086:67617-67636 | Msa1349890:intron | 35.0% | |
| TTTGATCTCTAGTAAGTGTC+AGG | - | tig0011086:67781-67800 | Msa1349890:intron | 35.0% | |
| TACTTGGGGTGATATGTATT+TGG | - | tig0011086:67853-67872 | Msa1349890:intron | 35.0% | |
| GTTGCTGGTAAATACTTTGT+TGG | - | tig0011086:68639-68658 | Msa1349890:intron | 35.0% | |
| ACTACACGGATAATACCAAA+AGG | + | tig0011086:68706-68725 | None:intergenic | 35.0% | |
| GTATTATCCGTGTAGTTCAT+GGG | - | tig0011086:68710-68729 | Msa1349890:intron | 35.0% | |
| GAAATTTCCCATGAACTACA+CGG | + | tig0011086:68720-68739 | None:intergenic | 35.0% | |
| ! | AAAGAATACAAAAGGCATGG+TGG | + | tig0011086:68963-68982 | None:intergenic | 35.0% |
| CATTTGCAAACACATGTTAC+TGG | + | tig0011086:69109-69128 | None:intergenic | 35.0% | |
| CATGGATCGTTATTGTTCTT+TGG | + | tig0011086:69167-69186 | None:intergenic | 35.0% | |
| AAGACACTAGCCATACTAAT+TGG | - | tig0011086:69539-69558 | Msa1349890:CDS | 35.0% | |
| AGCAATGAGTCCAATTAGTA+TGG | + | tig0011086:69552-69571 | None:intergenic | 35.0% | |
| ATACTAATTGGACTCATTGC+TGG | - | tig0011086:69551-69570 | Msa1349890:CDS | 35.0% | |
| ! | TTTTGAACAATGTTATGCGC+AGG | - | tig0011086:69713-69732 | Msa1349890:CDS | 35.0% |
| ATTGTGCTGGAAACTTACAA+AGG | + | tig0011086:69852-69871 | None:intergenic | 35.0% | |
| TTTATAGAAGGGAATTGTGC+TGG | + | tig0011086:69865-69884 | None:intergenic | 35.0% | |
| CACTGGCAATCTTTATAGAA+GGG | + | tig0011086:69876-69895 | None:intergenic | 35.0% | |
| TCACTGGCAATCTTTATAGA+AGG | + | tig0011086:69877-69896 | None:intergenic | 35.0% | |
| AGAGAATGAAGGGATTGGAA+TGG | + | tig0011086:67258-67277 | None:intergenic | 40.0% | |
| GAGTTTGTGTCAGAGAATGA+AGG | + | tig0011086:67269-67288 | None:intergenic | 40.0% | |
| ACAAACTCTTTCATCTTCGG+TGG | - | tig0011086:67281-67300 | Msa1349890:three_prime_UTR | 40.0% | |
| TCTCGTTTCAAATACTCACC+AGG | - | tig0011086:67308-67327 | Msa1349890:three_prime_UTR | 40.0% | |
| GATCATTGTTAAGGTCACCA+CGG | + | tig0011086:67463-67482 | None:intergenic | 40.0% | |
| ACACTATGTTTCGCTACCTA+CGG | - | tig0011086:67524-67543 | Msa1349890:intron | 40.0% | |
| AGTACAAGACAAGACAGAAG+TGG | - | tig0011086:67604-67623 | Msa1349890:intron | 40.0% | |
| TTCGGATGCGTTTACTAGAA+GGG | - | tig0011086:67658-67677 | Msa1349890:CDS | 40.0% | |
| ACTTATTTACAGTCGTCCGA+TGG | - | tig0011086:67692-67711 | Msa1349890:CDS | 40.0% | |
| !!! | TTTTAGGACAACTTCTTCCG+AGG | - | tig0011086:67727-67746 | Msa1349890:intron | 40.0% |
| ! | AACTTCTTCCGAGGATTTTC+AGG | - | tig0011086:67736-67755 | Msa1349890:intron | 40.0% |
| ! | ACTTCTTCCGAGGATTTTCA+GGG | - | tig0011086:67737-67756 | Msa1349890:intron | 40.0% |
| TTCGTGCATGTTCGAATTGA+TGG | - | tig0011086:68228-68247 | Msa1349890:intron | 40.0% | |
| TGGGTGTGGAAAACTAGAAT+TGG | - | tig0011086:68508-68527 | Msa1349890:intron | 40.0% | |
| GGTATTATCCGTGTAGTTCA+TGG | - | tig0011086:68709-68728 | Msa1349890:intron | 40.0% | |
| ! | TTCTTTTTGCTCAGCAAAGG+AGG | - | tig0011086:69004-69023 | Msa1349890:intron | 40.0% |
| TTCACAAAGCTTGGACAAGA+AGG | + | tig0011086:69603-69622 | None:intergenic | 40.0% | |
| !! | TCTCTGCTTTTCACAAAGCT+TGG | + | tig0011086:69612-69631 | None:intergenic | 40.0% |
| ! | AAGCTTTGTGAAAAGCAGAG+AGG | - | tig0011086:69611-69630 | Msa1349890:CDS | 40.0% |
| TTGTGAAAAGCAGAGAGGTA+TGG | - | tig0011086:69616-69635 | Msa1349890:CDS | 40.0% | |
| GTGTCAGAGAATGAAGGGAT+TGG | + | tig0011086:67263-67282 | None:intergenic | 45.0% | |
| ! | CTGAGTTGACTAAGGAAGTG+AGG | + | tig0011086:67364-67383 | None:intergenic | 45.0% |
| ! | AAAGGCTGCTGAGTTGACTA+AGG | + | tig0011086:67372-67391 | None:intergenic | 45.0% |
| TGATCAATGTTCACGTTGCG+TGG | - | tig0011086:67478-67497 | Msa1349890:three_prime_UTR | 45.0% | |
| AAGAAATGTGGACCGTCGAT+TGG | - | tig0011086:67629-67648 | Msa1349890:CDS | 45.0% | |
| ! | AGAAATGTGGACCGTCGATT+GGG | - | tig0011086:67630-67649 | Msa1349890:CDS | 45.0% |
| CTTCGGATGCGTTTACTAGA+AGG | - | tig0011086:67657-67676 | Msa1349890:CDS | 45.0% | |
| TATTTACAGTCGTCCGATGG+TGG | - | tig0011086:67695-67714 | Msa1349890:CDS | 45.0% | |
| ! | GTGTCAGGATTGTGTTTCTG+AGG | - | tig0011086:67796-67815 | Msa1349890:intron | 45.0% |
| !! | GTGTTTCTGAGGCAATCCAA+CGG | - | tig0011086:67807-67826 | Msa1349890:intron | 45.0% |
| GGCAATCCAACGGTTGAAAA+CGG | - | tig0011086:67817-67836 | Msa1349890:intron | 45.0% | |
| AACGGTTGAAAACGGAGTGT+GGG | - | tig0011086:67825-67844 | Msa1349890:intron | 45.0% | |
| CACTCGCGTGGTAGTAATAA+CGG | - | tig0011086:67911-67930 | Msa1349890:intron | 45.0% | |
| ! | ACGAAGCTACTTGTGCCTTT+TGG | - | tig0011086:68688-68707 | Msa1349890:intron | 45.0% |
| TGAGATAGCAATAGCATCCC+AGG | - | tig0011086:69256-69275 | Msa1349890:intron | 45.0% | |
| ATTGGACTCATTGCTGGTGT+TGG | - | tig0011086:69557-69576 | Msa1349890:CDS | 45.0% | |
| TGAACAATGTTATGCGCAGG+TGG | - | tig0011086:69716-69735 | Msa1349890:CDS | 45.0% | |
| !! | CATTTGTCCCTGCTTTTCTC+TGG | - | tig0011086:69777-69796 | Msa1349890:CDS | 45.0% |
| !! | AAATAATAACATAAATAAAT+GGG | + | tig0011086:70218-70237 | None:intergenic | 5.0% |
| TGAGTTCACGCTGTTCTCGT+AGG | + | tig0011086:67339-67358 | None:intergenic | 50.0% | |
| GCTGAGTCGGAAACTGTGTA+CGG | - | tig0011086:67425-67444 | Msa1349890:three_prime_UTR | 50.0% | |
| CTATGTTTCGCTACCTACGG+TGG | - | tig0011086:67527-67546 | Msa1349890:intron | 50.0% | |
| !! | ACCGTCGATTGGGTTGACTT+CGG | - | tig0011086:67640-67659 | Msa1349890:CDS | 50.0% |
| TCCGAAGTCAACCCAATCGA+CGG | + | tig0011086:67644-67663 | None:intergenic | 50.0% | |
| !! | TTCCGAGGATTTTCAGGGTG+TGG | - | tig0011086:67742-67761 | Msa1349890:intron | 50.0% |
| ! | CACACTCCGTTTTCAACCGT+TGG | + | tig0011086:67826-67845 | None:intergenic | 50.0% |
| CAACGGTTGAAAACGGAGTG+TGG | - | tig0011086:67824-67843 | Msa1349890:intron | 50.0% | |
| ACGGTTGAAAACGGAGTGTG+GGG | - | tig0011086:67826-67845 | Msa1349890:intron | 50.0% | |
| GGAGTGTGGGGATTCTACTT+GGG | - | tig0011086:67838-67857 | Msa1349890:intron | 50.0% | |
| GAGTGTGGGGATTCTACTTG+GGG | - | tig0011086:67839-67858 | Msa1349890:intron | 50.0% | |
| TGCTACGTGCGTTATTCCGA+AGG | - | tig0011086:67881-67900 | Msa1349890:intron | 50.0% | |
| TACGTGCGTTATTCCGAAGG+TGG | - | tig0011086:67884-67903 | Msa1349890:intron | 50.0% | |
| AAGCTGTTGCTCTTCCCATG+TGG | - | tig0011086:68471-68490 | Msa1349890:intron | 50.0% | |
| TTGCTCTTCCCATGTGGAGT+GGG | - | tig0011086:68477-68496 | Msa1349890:intron | 50.0% | |
| GTTCACGCTGTTCTCGTAGG+CGG | + | tig0011086:67336-67355 | None:intergenic | 55.0% | |
| AGTTTCCGACTCAGCAGAGC+CGG | + | tig0011086:67420-67439 | None:intergenic | 55.0% | |
| CGCCACACCCTGAAAATCCT+CGG | + | tig0011086:67747-67766 | None:intergenic | 55.0% | |
| CGGAGTGTGGGGATTCTACT+TGG | - | tig0011086:67837-67856 | Msa1349890:intron | 55.0% | |
| ACGCGAGTGATCTCCACCTT+CGG | + | tig0011086:67900-67919 | None:intergenic | 55.0% | |
| GTTGCTCTTCCCATGTGGAG+TGG | - | tig0011086:68476-68495 | Msa1349890:intron | 55.0% | |
| CTTCCCATGTGGAGTGGGTA+TGG | - | tig0011086:68482-68501 | Msa1349890:intron | 55.0% | |
| CCTCCATACCCACTCCACAT+GGG | + | tig0011086:68488-68507 | None:intergenic | 55.0% | |
| ACCTCCATACCCACTCCACA+TGG | + | tig0011086:68489-68508 | None:intergenic | 55.0% | |
| ATGTGGAGTGGGTATGGAGG+TGG | - | tig0011086:68488-68507 | Msa1349890:intron | 55.0% | |
| TGTGGAGTGGGTATGGAGGT+GGG | - | tig0011086:68489-68508 | Msa1349890:intron | 55.0% | |
| CTGTTCTCGTAGGCGGAACC+TGG | + | tig0011086:67329-67348 | None:intergenic | 60.0% | |
| AGTTCCCGGCTCTGCTGAGT+CGG | - | tig0011086:67412-67431 | Msa1349890:three_prime_UTR | 60.0% | |
| GTTTCCGACTCAGCAGAGCC+GGG | + | tig0011086:67419-67438 | None:intergenic | 60.0% | |
| TACGGCCTTTCTCAGTGCCG+TGG | - | tig0011086:67443-67462 | Msa1349890:three_prime_UTR | 60.0% | |
| ! | GGTCACCACGGCACTGAGAA+AGG | + | tig0011086:67451-67470 | None:intergenic | 60.0% |
| ! | TCCCGAGTTGACTCACCGCA+CGG | + | tig0011086:67505-67524 | None:intergenic | 60.0% |
| TCAGGGTGTGGCGCAGTGTA+CGG | - | tig0011086:67754-67773 | Msa1349890:intron | 60.0% | |
| GAAGGTGGAGATCACTCGCG+TGG | - | tig0011086:67899-67918 | Msa1349890:intron | 60.0% | |
| CCCATGTGGAGTGGGTATGG+AGG | - | tig0011086:68485-68504 | Msa1349890:intron | 60.0% | |
| AGTGGGTATGGAGGTGGGTG+TGG | - | tig0011086:68494-68513 | Msa1349890:intron | 60.0% | |
| TTCACGTTGCGTGGCCCGTG+CGG | - | tig0011086:67487-67506 | Msa1349890:exon | 65.0% | |
| GCCCGTGCGGTGAGTCAACT+CGG | - | tig0011086:67500-67519 | Msa1349890:intron | 65.0% | |
| ! | CCCGAGTTGACTCACCGCAC+GGG | + | tig0011086:67504-67523 | None:intergenic | 65.0% |
| CCCGTGCGGTGAGTCAACTC+GGG | - | tig0011086:67501-67520 | Msa1349890:intron | 65.0% | |
| AAGCTGCAACGCGCCACCGT+AGG | + | tig0011086:67543-67562 | None:intergenic | 65.0% | |
| GGTGGCGCGTTGCAGCTTGA+AGG | - | tig0011086:67545-67564 | Msa1349890:intron | 65.0% | |
| CAGGGTGTGGCGCAGTGTAC+GGG | - | tig0011086:67755-67774 | Msa1349890:intron | 65.0% | |
| AGGGTGTGGCGCAGTGTACG+GGG | - | tig0011086:67756-67775 | Msa1349890:intron | 65.0% | |
| GGGTGTGGCGCAGTGTACGG+GGG | - | tig0011086:67757-67776 | Msa1349890:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0011086 | gene | 67009 | 70241 | 67009 | ID=Msa1349890;Name=Msa1349890 |
| tig0011086 | mRNA | 67009 | 70241 | 67009 | ID=Msa1349890-mRNA-1;Parent=Msa1349890;Name=Msa1349890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=176|1|1|1|1|1|3|496|294 |
| tig0011086 | exon | 67009 | 67515 | 67009 | ID=Msa1349890-mRNA-1:exon:7168;Parent=Msa1349890-mRNA-1 |
| tig0011086 | exon | 67618 | 67743 | 67618 | ID=Msa1349890-mRNA-1:exon:7167;Parent=Msa1349890-mRNA-1 |
| tig0011086 | exon | 69318 | 70241 | 69318 | ID=Msa1349890-mRNA-1:exon:7166;Parent=Msa1349890-mRNA-1 |
| tig0011086 | five_prime_UTR | 70066 | 70241 | 70066 | ID=Msa1349890-mRNA-1:five_prime_utr;Parent=Msa1349890-mRNA-1 |
| tig0011086 | CDS | 69318 | 70065 | 69318 | ID=Msa1349890-mRNA-1:cds;Parent=Msa1349890-mRNA-1 |
| tig0011086 | CDS | 67618 | 67743 | 67618 | ID=Msa1349890-mRNA-1:cds;Parent=Msa1349890-mRNA-1 |
| tig0011086 | CDS | 67505 | 67515 | 67505 | ID=Msa1349890-mRNA-1:cds;Parent=Msa1349890-mRNA-1 |
| tig0011086 | three_prime_UTR | 67009 | 67504 | 67009 | ID=Msa1349890-mRNA-1:three_prime_utr;Parent=Msa1349890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
