AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930940 MtrunA17_Chr8g0391471 94.816 463 15 3 1 454 1 463 0.0 868
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930940 AT2G01650.2 61.099 473 146 7 1 451 1 457 0.0 549
Msa0930940 AT2G01650.1 61.099 473 146 7 1 451 1 457 0.0 549
Msa0930940 AT2G01650.3 58.942 397 125 7 1 375 1 381 2.66e-153 440

Find 125 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTATATCCCCACCATTTA+AGG 0.138844 6_2:-80110188 None:intergenic
TCTATTGGTACTTATGTTTC+AGG 0.140987 6_2:+80108143 Msa0930940:CDS
GATCTCAAATGATTGATTTA+TGG 0.155310 6_2:-80107625 None:intergenic
GTAGGTTTGGGTTTGGGATT+AGG 0.175605 6_2:-80107843 None:intergenic
CGAAAGGGTTGTTTACAAAT+TGG 0.223879 6_2:-80107999 None:intergenic
CCCACAGCTTCTTTAATCTT+TGG 0.237677 6_2:-80108266 None:intergenic
CCTTTCACTTCTTCTTCTTC+TGG 0.238978 6_2:+80107732 Msa0930940:CDS
TTGTTCTTCATAGTCGAAAA+TGG 0.244653 6_2:+80107662 Msa0930940:exon
CTAGGGGCTTGAACTTGATT+AGG 0.247442 6_2:-80110024 None:intergenic
GGTGTTAAAGTTTCTCTCTT+TGG 0.252715 6_2:-80108449 None:intergenic
TAGGTTTGGGTTTGGGATTA+GGG 0.259606 6_2:-80107842 None:intergenic
GATACACAAGAACTATTATT+AGG 0.271026 6_2:+80109580 Msa0930940:CDS
TGAGAAGAGAAGCTGAATTA+AGG 0.273073 6_2:+80109481 Msa0930940:CDS
GGTGGAGTAGGTTTGGGTTT+GGG 0.283318 6_2:-80107849 None:intergenic
GTCTTCTTCCTCTATCGTTT+TGG 0.294303 6_2:-80109987 None:intergenic
ATCAGTGAACCACTTGTAAA+TGG 0.308403 6_2:+80110094 Msa0930940:CDS
GAAGCTGTGGGCGAGGTTAT+TGG 0.314917 6_2:+80108278 Msa0930940:CDS
ACTGAATTGGAGATTTCTAT+TGG 0.324761 6_2:+80108128 Msa0930940:CDS
TGCTTTAAAAGAATCATGTT+TGG 0.332951 6_2:+80109892 Msa0930940:CDS
AAACAACAGAATCTGTTTCT+AGG 0.337000 6_2:-80110042 None:intergenic
CGGTGGAGTAGGTTTGGGTT+TGG 0.338165 6_2:-80107850 None:intergenic
TTCCTAAACTTAACATTCTC+AGG 0.339946 6_2:-80108227 None:intergenic
GTTGAATTGCTGAGTTTGTT+AGG 0.350477 6_2:+80108305 Msa0930940:CDS
CGGAGAGACATGGGCATTCA+TGG 0.352162 6_2:+80108349 Msa0930940:CDS
TTCTGAGTCTAATACTGAAT+TGG 0.356720 6_2:+80108115 Msa0930940:CDS
TTCAGCTGAACGTTTGTAGA+AGG 0.363666 6_2:-80109454 None:intergenic
TCTTCTCAAAGATCTCAAAA+TGG 0.368840 6_2:+80107951 Msa0930940:CDS
AGCGATCGGTGGAGTAGGTT+TGG 0.369595 6_2:-80107856 None:intergenic
ATGTTAAGTTTAGGAAGATT+AGG 0.375559 6_2:+80108234 Msa0930940:CDS
CAAGAAAGCAATTGTGTTGT+TGG 0.381393 6_2:+80108403 Msa0930940:CDS
GCGATCGGTGGAGTAGGTTT+GGG 0.384107 6_2:-80107855 None:intergenic
TAGGGGCTTGAACTTGATTA+GGG 0.388598 6_2:-80110023 None:intergenic
GGGGTAGGAATGGAATTTGC+AGG 0.422062 6_2:-80107798 None:intergenic
TCAGATGGAGTTGTACTTCA+AGG 0.423651 6_2:+80109612 Msa0930940:CDS
AACCTGAGAATGTTAAGTTT+AGG 0.430889 6_2:+80108225 Msa0930940:CDS
AAAGGCCAAGGTCGAGTCTT+GGG 0.431284 6_2:+80107762 Msa0930940:CDS
ATTGTTGAGGAATATTGTTA+AGG 0.431444 6_2:+80108202 Msa0930940:CDS
AACAACAGAATCTGTTTCTA+GGG 0.439799 6_2:-80110041 None:intergenic
TCATGAATGTAGGTAGGAAT+TGG 0.442163 6_2:-80110308 None:intergenic
GAACGTTTGTAGAAGGAATC+TGG 0.447302 6_2:-80109447 None:intergenic
TCTATATCCCCACCATTTAA+GGG 0.448956 6_2:-80110187 None:intergenic
CTATTGGTACTTATGTTTCA+GGG 0.450380 6_2:+80108144 Msa0930940:CDS
AAAGAGAATAGTGAAAAGTA+AGG 0.457100 6_2:-80110158 None:intergenic
TGTGTTGTTGGAACCACAAT+TGG 0.459857 6_2:+80108415 Msa0930940:CDS
GGCTACTTTCTCAGCGGAAA+TGG 0.460122 6_2:-80108474 None:intergenic
ATCCCATGTTTCCCAAAAGC+AGG 0.471596 6_2:+80109956 Msa0930940:CDS
TCTGAGAAGGACGAGGGGTA+GGG 0.472504 6_2:-80107818 None:intergenic
TCTTCTTCTGGTAAATTCAA+AGG 0.474590 6_2:+80107744 Msa0930940:CDS
CAAAGGCCAAGGTCGAGTCT+TGG 0.475772 6_2:+80107761 Msa0930940:CDS
TTCTGAGAAGGACGAGGGGT+AGG 0.483289 6_2:-80107819 None:intergenic
TGATTGATTTATGGATGGAA+GGG 0.483760 6_2:-80107616 None:intergenic
CTGAGAAGGACGAGGGGTAG+GGG 0.483771 6_2:-80107817 None:intergenic
GTTAGGATTTGAACTTAAAG+AGG 0.484850 6_2:+80108322 Msa0930940:CDS
AACCTCGTCCTCGGATCGAA+AGG 0.485306 6_2:-80108015 None:intergenic
ACCAACTACTGCTCTGTATG+AGG 0.485891 6_2:+80109653 Msa0930940:CDS
TTCAAGGTGTATTTGCTCCA+TGG 0.496010 6_2:+80109628 Msa0930940:CDS
TAAGTTTAGGAAGATTAGGA+TGG 0.496165 6_2:+80108238 Msa0930940:CDS
CAAAATTATGAATGAAAATG+AGG 0.497430 6_2:-80110221 None:intergenic
ATGATTGATTTATGGATGGA+AGG 0.500634 6_2:-80107617 None:intergenic
ACCCTTTCGATCCGAGGACG+AGG 0.506482 6_2:+80108013 Msa0930940:CDS
CAGAAGAAGAAGAAGTGAAA+GGG 0.507446 6_2:-80107731 None:intergenic
CTACAAACGTTCAGCTGAAG+AGG 0.515065 6_2:+80109458 Msa0930940:CDS
TCAAGGTGTATTTGCTCCAT+GGG 0.515302 6_2:+80109629 Msa0930940:CDS
CCAGAAGAAGAAGAAGTGAA+AGG 0.518931 6_2:-80107732 None:intergenic
GAAGTGACGAATGAATCAAA+TGG 0.527530 6_2:-80107930 None:intergenic
ACCTCGTCCTCGGATCGAAA+GGG 0.530145 6_2:-80108014 None:intergenic
GTGTTCAGAAACCTCGTCCT+CGG 0.530401 6_2:-80108024 None:intergenic
GTGGGGATATAGACACAATT+CGG 0.531118 6_2:+80110197 Msa0930940:three_prime_UTR
ATATTGTTCTTAAATTGTTG+AGG 0.534264 6_2:+80108189 Msa0930940:CDS
AAGAGGAGAACGGAGAGACA+TGG 0.535036 6_2:+80108339 Msa0930940:CDS
AAGCCATCTGCGGGTTTGCG+TGG 0.535106 6_2:-80107903 None:intergenic
TTGCTTTGATCTGAAGCGAT+CGG 0.538206 6_2:-80107870 None:intergenic
CTTTGATCTGAAGCGATCGG+TGG 0.538600 6_2:-80107867 None:intergenic
AGAGCAGTAGTTGGTTCCCA+TGG 0.544179 6_2:-80109645 None:intergenic
ACACGCCGTTGAACAACTAC+AGG 0.546054 6_2:-80109932 None:intergenic
TCTGGTAAATTCAAAGGCCA+AGG 0.550240 6_2:+80107750 Msa0930940:CDS
GAAGGACGAGGGGTAGGGGT+AGG 0.552141 6_2:-80107813 None:intergenic
TGATTAGGGCAGAAGGCACC+AGG 0.553360 6_2:-80110009 None:intergenic
TCAAATGATTGATTTATGGA+TGG 0.554170 6_2:-80107621 None:intergenic
TCCAAAGATTAAAGAAGCTG+TGG 0.555466 6_2:+80108265 Msa0930940:CDS
GATTAAAGAAGCTGTGGGCG+AGG 0.555589 6_2:+80108271 Msa0930940:CDS
ACGAGGGGTAGGGGTAGGAA+TGG 0.557142 6_2:-80107808 None:intergenic
AAATTAACTTTCTCCTCGGT+AGG 0.559081 6_2:-80108377 None:intergenic
TTGGGATTAGGGTTCTGAGA+AGG 0.565323 6_2:-80107831 None:intergenic
AAGTTTAGGAAGATTAGGAT+GGG 0.568581 6_2:+80108239 Msa0930940:CDS
ATATATTGCCTCATGAATGT+AGG 0.569788 6_2:-80110318 None:intergenic
GGAGTATCTTGAACCAATTG+TGG 0.569841 6_2:-80108428 None:intergenic
AATGGATCAAAGCCATCTGC+GGG 0.571592 6_2:-80107912 None:intergenic
AATGCTTAACCATTTACAAG+TGG 0.577084 6_2:-80110103 None:intergenic
TCTGAAGCGATCGGTGGAGT+AGG 0.577813 6_2:-80107861 None:intergenic
GATCAAATTAACTTTCTCCT+CGG 0.582104 6_2:-80108381 None:intergenic
TTGAACTTGATTAGGGCAGA+AGG 0.585290 6_2:-80110016 None:intergenic
TAAACAACCCTTTCGATCCG+AGG 0.585535 6_2:+80108007 Msa0930940:CDS
GATGTAAAAGACAAGATGAA+AGG 0.585648 6_2:+80107687 Msa0930940:CDS
GTTTCAGGGAATCCGTCTGA+AGG 0.588125 6_2:+80108158 Msa0930940:CDS
AAGAACCCAAGACTCGACCT+TGG 0.590087 6_2:-80107767 None:intergenic
ACCTCATACAGAGCAGTAGT+TGG 0.594344 6_2:-80109654 None:intergenic
CGGAATAGATGAAATAGAGA+GGG 0.594503 6_2:-80107575 None:intergenic
TTTGAACTTAAAGAGGAGAA+CGG 0.595229 6_2:+80108329 Msa0930940:CDS
TGCATCCTGTAGTTGTTCAA+CGG 0.598631 6_2:+80109927 Msa0930940:CDS
AGAGGAGAACGGAGAGACAT+GGG 0.598709 6_2:+80108340 Msa0930940:CDS
TTAGGGTTCTGAGAAGGACG+AGG 0.599978 6_2:-80107825 None:intergenic
AACGATAGAGGAAGAAGACC+TGG 0.600898 6_2:+80109991 Msa0930940:CDS
AAATGGATCAAAGCCATCTG+CGG 0.612029 6_2:-80107913 None:intergenic
AAACCACGCAAACCCGCAGA+TGG 0.614242 6_2:+80107900 Msa0930940:CDS
TCCCATGTTTCCCAAAAGCA+GGG 0.615985 6_2:+80109957 Msa0930940:CDS
ACTTTCTCAGCGGAAATGGT+AGG 0.622064 6_2:-80108470 None:intergenic
CTATATCCCCACCATTTAAG+GGG 0.622105 6_2:-80110186 None:intergenic
CCAAAGATTAAAGAAGCTGT+GGG 0.630530 6_2:+80108266 Msa0930940:CDS
ACAACAGAATCTGTTTCTAG+GGG 0.631709 6_2:-80110040 None:intergenic
ATTGCCTCATGAATGTAGGT+AGG 0.633785 6_2:-80110314 None:intergenic
TAGGGTTCTGAGAAGGACGA+GGG 0.637909 6_2:-80107824 None:intergenic
TTCCGCTGAGAAAGTAGCCG+AGG 0.648892 6_2:+80108478 Msa0930940:CDS
ACGGAATAGATGAAATAGAG+AGG 0.650951 6_2:-80107576 None:intergenic
GGATAAGAAACAAACACGCA+CGG 0.657948 6_2:-80107595 None:intergenic
GCTGTGGGCGAGGTTATTGG+TGG 0.660528 6_2:+80108281 Msa0930940:CDS
GAATAGATGAAATAGAGAGG+GGG 0.668449 6_2:-80107573 None:intergenic
AATTCCTACCTACATTCATG+AGG 0.671047 6_2:+80110310 Msa0930940:three_prime_UTR
ATATCAACAGAACCTTCAGA+CGG 0.678273 6_2:-80108170 None:intergenic
ATTCATGGAGGTTCCTACCG+AGG 0.688667 6_2:+80108364 Msa0930940:CDS
GGACGAGGTTTCTGAACACG+TGG 0.689204 6_2:+80108028 Msa0930940:CDS
GGAATAGATGAAATAGAGAG+GGG 0.691713 6_2:-80107574 None:intergenic
AGAGACATGGGCATTCATGG+AGG 0.712922 6_2:+80108352 Msa0930940:CDS
GGCCTCGGCTACTTTCTCAG+CGG 0.713672 6_2:-80108480 None:intergenic
AGGGTTCTGAGAAGGACGAG+GGG 0.727880 6_2:-80107823 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTTTTTTTATTGTATT+AGG - chr6_2:80108923-80108942 None:intergenic 10.0%
!! AAGTTAAAATCAAATAGAAA+AGG - chr6_2:80109684-80109703 None:intergenic 15.0%
!! ATATTGTTCTTAAATTGTTG+AGG + chr6_2:80108189-80108208 Msa0930940:CDS 20.0%
!!! TTGAATATTTGGTTTAAACT+TGG + chr6_2:80108632-80108651 Msa0930940:intron 20.0%
!!! ATATACTGAAATTTGTTGAT+AGG + chr6_2:80108722-80108741 Msa0930940:intron 20.0%
!!! TTTGTATGTTGGTTTAAATT+TGG + chr6_2:80108757-80108776 Msa0930940:intron 20.0%
!! TTGCATAAAAGTAGAAAAAT+CGG + chr6_2:80108941-80108960 Msa0930940:intron 20.0%
!!! ATAAAAACTATTTTCAACCA+AGG + chr6_2:80108966-80108985 Msa0930940:intron 20.0%
!!! TAAAAACTATTTTCAACCAA+GGG + chr6_2:80108967-80108986 Msa0930940:intron 20.0%
!! ACTAAAATACTCAAAGAAAA+AGG - chr6_2:80109254-80109273 None:intergenic 20.0%
!! CATAATCAATCTAAAGAATT+AGG - chr6_2:80109342-80109361 None:intergenic 20.0%
!! CAAAATTATGAATGAAAATG+AGG - chr6_2:80110224-80110243 None:intergenic 20.0%
!! TCAAATGATTGATTTATGGA+TGG - chr6_2:80107624-80107643 None:intergenic 25.0%
!! GATCTCAAATGATTGATTTA+TGG - chr6_2:80107628-80107647 None:intergenic 25.0%
! ATTGTTGAGGAATATTGTTA+AGG + chr6_2:80108202-80108221 Msa0930940:CDS 25.0%
! ATGTTAAGTTTAGGAAGATT+AGG + chr6_2:80108234-80108253 Msa0930940:CDS 25.0%
! AAACTTGGTTGTATAAATAG+AGG + chr6_2:80108647-80108666 Msa0930940:intron 25.0%
! AACTTGGTTGTATAAATAGA+GGG + chr6_2:80108648-80108667 Msa0930940:intron 25.0%
! TTAAACCAACATACAAAAGT+TGG - chr6_2:80108754-80108773 None:intergenic 25.0%
! CAATATAGCTTATGAAAACA+GGG - chr6_2:80109062-80109081 None:intergenic 25.0%
!!! ATGTCATAAGCTATTTTCAT+AGG + chr6_2:80109129-80109148 Msa0930940:intron 25.0%
!!! CTTTGAGTATTTTAGTTTGA+TGG + chr6_2:80109258-80109277 Msa0930940:intron 25.0%
! GATACACAAGAACTATTATT+AGG + chr6_2:80109580-80109599 Msa0930940:CDS 25.0%
!!! CAAACGTAAATTGTTATTTG+GGG - chr6_2:80109750-80109769 None:intergenic 25.0%
!!! CCAAACGTAAATTGTTATTT+GGG - chr6_2:80109751-80109770 None:intergenic 25.0%
!! TCCAAACGTAAATTGTTATT+TGG - chr6_2:80109752-80109771 None:intergenic 25.0%
!!! TGCTTTAAAAGAATCATGTT+TGG + chr6_2:80109892-80109911 Msa0930940:CDS 25.0%
! AAAGAGAATAGTGAAAAGTA+AGG - chr6_2:80110161-80110180 None:intergenic 25.0%
! TGATTGATTTATGGATGGAA+GGG - chr6_2:80107619-80107638 None:intergenic 30.0%
! ATGATTGATTTATGGATGGA+AGG - chr6_2:80107620-80107639 None:intergenic 30.0%
TTGTTCTTCATAGTCGAAAA+TGG + chr6_2:80107662-80107681 Msa0930940:exon 30.0%
GATGTAAAAGACAAGATGAA+AGG + chr6_2:80107687-80107706 Msa0930940:CDS 30.0%
TCTTCTTCTGGTAAATTCAA+AGG + chr6_2:80107744-80107763 Msa0930940:CDS 30.0%
TCTTCTCAAAGATCTCAAAA+TGG + chr6_2:80107951-80107970 Msa0930940:CDS 30.0%
! CATCATCATCGTTTTCAATT+GGG - chr6_2:80108070-80108089 None:intergenic 30.0%
! ACATCATCATCGTTTTCAAT+TGG - chr6_2:80108071-80108090 None:intergenic 30.0%
TTCTGAGTCTAATACTGAAT+TGG + chr6_2:80108115-80108134 Msa0930940:CDS 30.0%
ACTGAATTGGAGATTTCTAT+TGG + chr6_2:80108128-80108147 Msa0930940:CDS 30.0%
TCTATTGGTACTTATGTTTC+AGG + chr6_2:80108143-80108162 Msa0930940:CDS 30.0%
CTATTGGTACTTATGTTTCA+GGG + chr6_2:80108144-80108163 Msa0930940:CDS 30.0%
AACCTGAGAATGTTAAGTTT+AGG + chr6_2:80108225-80108244 Msa0930940:CDS 30.0%
TTCCTAAACTTAACATTCTC+AGG - chr6_2:80108230-80108249 None:intergenic 30.0%
TAAGTTTAGGAAGATTAGGA+TGG + chr6_2:80108238-80108257 Msa0930940:CDS 30.0%
AAGTTTAGGAAGATTAGGAT+GGG + chr6_2:80108239-80108258 Msa0930940:CDS 30.0%
GTTAGGATTTGAACTTAAAG+AGG + chr6_2:80108322-80108341 Msa0930940:CDS 30.0%
TTTGAACTTAAAGAGGAGAA+CGG + chr6_2:80108329-80108348 Msa0930940:CDS 30.0%
GATCAAATTAACTTTCTCCT+CGG - chr6_2:80108384-80108403 None:intergenic 30.0%
!!! TCTGTCAATCTTTTTTGGTT+CGG - chr6_2:80108504-80108523 None:intergenic 30.0%
ACTTGGTTGTATAAATAGAG+GGG + chr6_2:80108649-80108668 Msa0930940:intron 30.0%
! TTTGTCCAACTTTTGTATGT+TGG + chr6_2:80108746-80108765 Msa0930940:intron 30.0%
TTAAATTTGGCTGTAATGCA+AGG + chr6_2:80108770-80108789 Msa0930940:intron 30.0%
TGCTTAAACCTTTACTTGAT+AGG - chr6_2:80108839-80108858 None:intergenic 30.0%
TATTAGGATGAGTTTCTCTT+GGG - chr6_2:80108907-80108926 None:intergenic 30.0%
! CAAGGGTATACTTTGTTTAT+GGG + chr6_2:80108984-80109003 Msa0930940:intron 30.0%
CCAATATAGCTTATGAAAAC+AGG - chr6_2:80109063-80109082 None:intergenic 30.0%
! CCTGTTTTCATAAGCTATAT+TGG + chr6_2:80109060-80109079 Msa0930940:intron 30.0%
! CCTTATTTGAGTTTATCTAC+TGG - chr6_2:80109185-80109204 None:intergenic 30.0%
CCAGTAGATAAACTCAAATA+AGG + chr6_2:80109182-80109201 Msa0930940:intron 30.0%
TCAAATAAGGTAATCCAAAC+AGG + chr6_2:80109195-80109214 Msa0930940:intron 30.0%
! TTTTTCATAAAGAGCCTGTT+TGG - chr6_2:80109212-80109231 None:intergenic 30.0%
GATTCAAATTTACCTCTTTC+AGG + chr6_2:80109374-80109393 Msa0930940:intron 30.0%
! GCTTTTCTTTAAGTGACTTT+GGG - chr6_2:80109539-80109558 None:intergenic 30.0%
! TGCTTTTCTTTAAGTGACTT+TGG - chr6_2:80109540-80109559 None:intergenic 30.0%
! ATTAGGATTCAGTTTTCAGA+TGG + chr6_2:80109597-80109616 Msa0930940:CDS 30.0%
TAACTTATGCCTTTCAATTG+TGG + chr6_2:80109698-80109717 Msa0930940:intron 30.0%
GGTTAATTTCCACAATTGAA+AGG - chr6_2:80109710-80109729 None:intergenic 30.0%
CCCAAATAACAATTTACGTT+TGG + chr6_2:80109748-80109767 Msa0930940:intron 30.0%
!! AACAACAGAATCTGTTTCTA+GGG - chr6_2:80110044-80110063 None:intergenic 30.0%
! AAACAACAGAATCTGTTTCT+AGG - chr6_2:80110045-80110064 None:intergenic 30.0%
AATGCTTAACCATTTACAAG+TGG - chr6_2:80110106-80110125 None:intergenic 30.0%
!!! CTCTTTTTTTTCCCCTTAAA+TGG + chr6_2:80110175-80110194 Msa0930940:three_prime_UTR 30.0%
!!! TTTTTTTTCCCCTTAAATGG+TGG + chr6_2:80110178-80110197 Msa0930940:three_prime_UTR 30.0%
!!! TTTTTTTCCCCTTAAATGGT+GGG + chr6_2:80110179-80110198 Msa0930940:three_prime_UTR 30.0%
GAATAGATGAAATAGAGAGG+GGG - chr6_2:80107576-80107595 None:intergenic 35.0%
GGAATAGATGAAATAGAGAG+GGG - chr6_2:80107577-80107596 None:intergenic 35.0%
CGGAATAGATGAAATAGAGA+GGG - chr6_2:80107578-80107597 None:intergenic 35.0%
ACGGAATAGATGAAATAGAG+AGG - chr6_2:80107579-80107598 None:intergenic 35.0%
CAGAAGAAGAAGAAGTGAAA+GGG - chr6_2:80107734-80107753 None:intergenic 35.0%
GAAGTGACGAATGAATCAAA+TGG - chr6_2:80107933-80107952 None:intergenic 35.0%
CGAAAGGGTTGTTTACAAAT+TGG - chr6_2:80108002-80108021 None:intergenic 35.0%
ATATCAACAGAACCTTCAGA+CGG - chr6_2:80108173-80108192 None:intergenic 35.0%
TCCAAAGATTAAAGAAGCTG+TGG + chr6_2:80108265-80108284 Msa0930940:CDS 35.0%
CCAAAGATTAAAGAAGCTGT+GGG + chr6_2:80108266-80108285 Msa0930940:CDS 35.0%
! GTTGAATTGCTGAGTTTGTT+AGG + chr6_2:80108305-80108324 Msa0930940:CDS 35.0%
AAATTAACTTTCTCCTCGGT+AGG - chr6_2:80108380-80108399 None:intergenic 35.0%
CAAGAAAGCAATTGTGTTGT+TGG + chr6_2:80108403-80108422 Msa0930940:CDS 35.0%
GGTGTTAAAGTTTCTCTCTT+TGG - chr6_2:80108452-80108471 None:intergenic 35.0%
ACCAAAAAAGATTGACAGAC+AGG + chr6_2:80108505-80108524 Msa0930940:CDS 35.0%
!!! ACCTGTCTGTCAATCTTTTT+TGG - chr6_2:80108509-80108528 None:intergenic 35.0%
!! TTTTGCACAGTTTGAGACTA+GGG + chr6_2:80108608-80108627 Msa0930940:intron 35.0%
TGTTGGGAAGTAATTGTGTA+GGG + chr6_2:80108691-80108710 Msa0930940:intron 35.0%
TTACTTGATAGGATTGTGGA+TGG - chr6_2:80108828-80108847 None:intergenic 35.0%
TCCACAATCCTATCAAGTAA+AGG + chr6_2:80108828-80108847 Msa0930940:intron 35.0%
ACCTTTACTTGATAGGATTG+TGG - chr6_2:80108832-80108851 None:intergenic 35.0%
CTACTAAGCTGAAGAAGTTA+TGG + chr6_2:80108862-80108881 Msa0930940:intron 35.0%
CTTGGGGTGTAAATATACTT+GGG - chr6_2:80108890-80108909 None:intergenic 35.0%
TCTTGGGGTGTAAATATACT+TGG - chr6_2:80108891-80108910 None:intergenic 35.0%
ATTAGGATGAGTTTCTCTTG+GGG - chr6_2:80108906-80108925 None:intergenic 35.0%
GTATTAGGATGAGTTTCTCT+TGG - chr6_2:80108908-80108927 None:intergenic 35.0%
CCATAAACAAAGTATACCCT+TGG - chr6_2:80108986-80109005 None:intergenic 35.0%
! CCAAGGGTATACTTTGTTTA+TGG + chr6_2:80108983-80109002 Msa0930940:intron 35.0%
! AATTTACCTCTTTCAGGTGA+AGG + chr6_2:80109380-80109399 Msa0930940:intron 35.0%
TGAGAAGAGAAGCTGAATTA+AGG + chr6_2:80109481-80109500 Msa0930940:CDS 35.0%
ACAGTAAGACACTAACACTT+GGG - chr6_2:80109807-80109826 None:intergenic 35.0%
AACAGTAAGACACTAACACT+TGG - chr6_2:80109808-80109827 None:intergenic 35.0%
TCTTACTGTTTATTCCGAGT+TGG + chr6_2:80109818-80109837 Msa0930940:intron 35.0%
CACAAACTGCATTATCAACA+TGG - chr6_2:80109867-80109886 None:intergenic 35.0%
!! ACAACAGAATCTGTTTCTAG+GGG - chr6_2:80110043-80110062 None:intergenic 35.0%
!!! ACAGATTCTGTTGTTTTCAC+CGG + chr6_2:80110049-80110068 Msa0930940:CDS 35.0%
!!! CAGCAATTCATTTTTGAGAC+CGG - chr6_2:80110071-80110090 None:intergenic 35.0%
ATCAGTGAACCACTTGTAAA+TGG + chr6_2:80110094-80110113 Msa0930940:CDS 35.0%
!!! TTTTTTCCCCTTAAATGGTG+GGG + chr6_2:80110180-80110199 Msa0930940:three_prime_UTR 35.0%
TCTATATCCCCACCATTTAA+GGG - chr6_2:80110190-80110209 None:intergenic 35.0%
TCATGAATGTAGGTAGGAAT+TGG - chr6_2:80110311-80110330 None:intergenic 35.0%
AATTCCTACCTACATTCATG+AGG + chr6_2:80110310-80110329 Msa0930940:three_prime_UTR 35.0%
GGATAAGAAACAAACACGCA+CGG - chr6_2:80107598-80107617 None:intergenic 40.0%
CCAGAAGAAGAAGAAGTGAA+AGG - chr6_2:80107735-80107754 None:intergenic 40.0%
CCTTTCACTTCTTCTTCTTC+TGG + chr6_2:80107732-80107751 Msa0930940:CDS 40.0%
TCTGGTAAATTCAAAGGCCA+AGG + chr6_2:80107750-80107769 Msa0930940:CDS 40.0%
! TAGGTTTGGGTTTGGGATTA+GGG - chr6_2:80107845-80107864 None:intergenic 40.0%
! TTGCTTTGATCTGAAGCGAT+CGG - chr6_2:80107873-80107892 None:intergenic 40.0%
AAATGGATCAAAGCCATCTG+CGG - chr6_2:80107916-80107935 None:intergenic 40.0%
CCCACAGCTTCTTTAATCTT+TGG - chr6_2:80108269-80108288 None:intergenic 40.0%
! TGTGTTGTTGGAACCACAAT+TGG + chr6_2:80108415-80108434 Msa0930940:CDS 40.0%
! GGAGTATCTTGAACCAATTG+TGG - chr6_2:80108431-80108450 None:intergenic 40.0%
!!! AATCTTTTTTGGTTCGGCCT+CGG - chr6_2:80108498-80108517 None:intergenic 40.0%
!! GTTTTGCACAGTTTGAGACT+AGG + chr6_2:80108607-80108626 Msa0930940:intron 40.0%
GAGACTAGGGCTTGAATATT+TGG + chr6_2:80108621-80108640 Msa0930940:intron 40.0%
TAGAGGGGAAAAGTAAACTG+TGG + chr6_2:80108664-80108683 Msa0930940:intron 40.0%
AGAGGGGAAAAGTAAACTGT+GGG + chr6_2:80108665-80108684 Msa0930940:intron 40.0%
AAGTAAACTGTGGGTTCTGT+TGG + chr6_2:80108674-80108693 Msa0930940:intron 40.0%
AGTAAACTGTGGGTTCTGTT+GGG + chr6_2:80108675-80108694 Msa0930940:intron 40.0%
CTGTTGGGAAGTAATTGTGT+AGG + chr6_2:80108690-80108709 Msa0930940:intron 40.0%
AGCTTATGAAAACAGGGTCA+TGG - chr6_2:80109056-80109075 None:intergenic 40.0%
AAGCAATTGTGAGACTGTTC+GGG - chr6_2:80109159-80109178 None:intergenic 40.0%
CAAGCAATTGTGAGACTGTT+CGG - chr6_2:80109160-80109179 None:intergenic 40.0%
TAATGACACACATGCTCTGT+GGG - chr6_2:80109296-80109315 None:intergenic 40.0%
TTAATGACACACATGCTCTG+TGG - chr6_2:80109297-80109316 None:intergenic 40.0%
GAACGTTTGTAGAAGGAATC+TGG - chr6_2:80109450-80109469 None:intergenic 40.0%
TTCAGCTGAACGTTTGTAGA+AGG - chr6_2:80109457-80109476 None:intergenic 40.0%
TCAGATGGAGTTGTACTTCA+AGG + chr6_2:80109612-80109631 Msa0930940:CDS 40.0%
TTCAAGGTGTATTTGCTCCA+TGG + chr6_2:80109628-80109647 Msa0930940:CDS 40.0%
TCAAGGTGTATTTGCTCCAT+GGG + chr6_2:80109629-80109648 Msa0930940:CDS 40.0%
! GGGGAACTTTTATGTCAGAA+CGG - chr6_2:80109731-80109750 None:intergenic 40.0%
TGCATCCTGTAGTTGTTCAA+CGG + chr6_2:80109927-80109946 Msa0930940:CDS 40.0%
GCAAAAAGCCAAAACGATAG+AGG + chr6_2:80109979-80109998 Msa0930940:CDS 40.0%
! GTCTTCTTCCTCTATCGTTT+TGG - chr6_2:80109990-80110009 None:intergenic 40.0%
TTGAACTTGATTAGGGCAGA+AGG - chr6_2:80110019-80110038 None:intergenic 40.0%
TAGGGGCTTGAACTTGATTA+GGG - chr6_2:80110026-80110045 None:intergenic 40.0%
CGGTCTCAAAAATGAATTGC+TGG + chr6_2:80110069-80110088 Msa0930940:CDS 40.0%
CTATATCCCCACCATTTAAG+GGG - chr6_2:80110189-80110208 None:intergenic 40.0%
GTCTATATCCCCACCATTTA+AGG - chr6_2:80110191-80110210 None:intergenic 40.0%
GTGGGGATATAGACACAATT+CGG + chr6_2:80110197-80110216 Msa0930940:three_prime_UTR 40.0%
ATTGCCTCATGAATGTAGGT+AGG - chr6_2:80110317-80110336 None:intergenic 40.0%
!! TTGGGATTAGGGTTCTGAGA+AGG - chr6_2:80107834-80107853 None:intergenic 45.0%
! GTAGGTTTGGGTTTGGGATT+AGG - chr6_2:80107846-80107865 None:intergenic 45.0%
AATGGATCAAAGCCATCTGC+GGG - chr6_2:80107915-80107934 None:intergenic 45.0%
TAAACAACCCTTTCGATCCG+AGG + chr6_2:80108007-80108026 Msa0930940:CDS 45.0%
ACTTTCTCAGCGGAAATGGT+AGG - chr6_2:80108473-80108492 None:intergenic 45.0%
GGGAAGTAATTGTGTAGGGT+TGG + chr6_2:80108695-80108714 Msa0930940:intron 45.0%
AGAAGACCTTCACCTGAAAG+AGG - chr6_2:80109389-80109408 None:intergenic 45.0%
CTACAAACGTTCAGCTGAAG+AGG + chr6_2:80109458-80109477 Msa0930940:CDS 45.0%
ACCAACTACTGCTCTGTATG+AGG + chr6_2:80109653-80109672 Msa0930940:CDS 45.0%
ACCTCATACAGAGCAGTAGT+TGG - chr6_2:80109657-80109676 None:intergenic 45.0%
ACAATGCTGAGTTGCCAACT+CGG - chr6_2:80109835-80109854 None:intergenic 45.0%
ATCCCATGTTTCCCAAAAGC+AGG + chr6_2:80109956-80109975 Msa0930940:CDS 45.0%
TCCCATGTTTCCCAAAAGCA+GGG + chr6_2:80109957-80109976 Msa0930940:CDS 45.0%
!! TGGCTTTTTGCCCTGCTTTT+GGG - chr6_2:80109970-80109989 None:intergenic 45.0%
!! TTGGCTTTTTGCCCTGCTTT+TGG - chr6_2:80109971-80109990 None:intergenic 45.0%
AACGATAGAGGAAGAAGACC+TGG + chr6_2:80109991-80110010 Msa0930940:CDS 45.0%
CTAGGGGCTTGAACTTGATT+AGG - chr6_2:80110027-80110046 None:intergenic 45.0%
AAAGGCCAAGGTCGAGTCTT+GGG + chr6_2:80107762-80107781 Msa0930940:CDS 50.0%
AAGAACCCAAGACTCGACCT+TGG - chr6_2:80107770-80107789 None:intergenic 50.0%
GGGGTAGGAATGGAATTTGC+AGG - chr6_2:80107801-80107820 None:intergenic 50.0%
!! TAGGGTTCTGAGAAGGACGA+GGG - chr6_2:80107827-80107846 None:intergenic 50.0%
!! TTAGGGTTCTGAGAAGGACG+AGG - chr6_2:80107828-80107847 None:intergenic 50.0%
! GGTGGAGTAGGTTTGGGTTT+GGG - chr6_2:80107852-80107871 None:intergenic 50.0%
! CTTTGATCTGAAGCGATCGG+TGG - chr6_2:80107870-80107889 None:intergenic 50.0%
GTGTTCAGAAACCTCGTCCT+CGG - chr6_2:80108027-80108046 None:intergenic 50.0%
GTTTCAGGGAATCCGTCTGA+AGG + chr6_2:80108158-80108177 Msa0930940:CDS 50.0%
GATTAAAGAAGCTGTGGGCG+AGG + chr6_2:80108271-80108290 Msa0930940:CDS 50.0%
AAGAGGAGAACGGAGAGACA+TGG + chr6_2:80108339-80108358 Msa0930940:CDS 50.0%
AGAGGAGAACGGAGAGACAT+GGG + chr6_2:80108340-80108359 Msa0930940:CDS 50.0%
AGAGACATGGGCATTCATGG+AGG + chr6_2:80108352-80108371 Msa0930940:CDS 50.0%
ATTCATGGAGGTTCCTACCG+AGG + chr6_2:80108364-80108383 Msa0930940:CDS 50.0%
! GGCTACTTTCTCAGCGGAAA+TGG - chr6_2:80108477-80108496 None:intergenic 50.0%
! AGAGCAGTAGTTGGTTCCCA+TGG - chr6_2:80109648-80109667 None:intergenic 50.0%
ACACGCCGTTGAACAACTAC+AGG - chr6_2:80109935-80109954 None:intergenic 50.0%
!! GCCCTGCTTTTGGGAAACAT+GGG - chr6_2:80109961-80109980 None:intergenic 50.0%
!! TGCCCTGCTTTTGGGAAACA+TGG - chr6_2:80109962-80109981 None:intergenic 50.0%
CAAAGGCCAAGGTCGAGTCT+TGG + chr6_2:80107761-80107780 Msa0930940:CDS 55.0%
TCTGAGAAGGACGAGGGGTA+GGG - chr6_2:80107821-80107840 None:intergenic 55.0%
! TTCTGAGAAGGACGAGGGGT+AGG - chr6_2:80107822-80107841 None:intergenic 55.0%
!! AGGGTTCTGAGAAGGACGAG+GGG - chr6_2:80107826-80107845 None:intergenic 55.0%
! CGGTGGAGTAGGTTTGGGTT+TGG - chr6_2:80107853-80107872 None:intergenic 55.0%
GCGATCGGTGGAGTAGGTTT+GGG - chr6_2:80107858-80107877 None:intergenic 55.0%
AGCGATCGGTGGAGTAGGTT+TGG - chr6_2:80107859-80107878 None:intergenic 55.0%
! TCTGAAGCGATCGGTGGAGT+AGG - chr6_2:80107864-80107883 None:intergenic 55.0%
AAACCACGCAAACCCGCAGA+TGG + chr6_2:80107900-80107919 Msa0930940:CDS 55.0%
ACCTCGTCCTCGGATCGAAA+GGG - chr6_2:80108017-80108036 None:intergenic 55.0%
AACCTCGTCCTCGGATCGAA+AGG - chr6_2:80108018-80108037 None:intergenic 55.0%
GGACGAGGTTTCTGAACACG+TGG + chr6_2:80108028-80108047 Msa0930940:CDS 55.0%
GAAGCTGTGGGCGAGGTTAT+TGG + chr6_2:80108278-80108297 Msa0930940:CDS 55.0%
CGGAGAGACATGGGCATTCA+TGG + chr6_2:80108349-80108368 Msa0930940:CDS 55.0%
TTCCGCTGAGAAAGTAGCCG+AGG + chr6_2:80108478-80108497 Msa0930940:CDS 55.0%
!! TGATTAGGGCAGAAGGCACC+AGG - chr6_2:80110012-80110031 None:intergenic 55.0%
ACGAGGGGTAGGGGTAGGAA+TGG - chr6_2:80107811-80107830 None:intergenic 60.0%
CTGAGAAGGACGAGGGGTAG+GGG - chr6_2:80107820-80107839 None:intergenic 60.0%
AAGCCATCTGCGGGTTTGCG+TGG - chr6_2:80107906-80107925 None:intergenic 60.0%
ACCCTTTCGATCCGAGGACG+AGG + chr6_2:80108013-80108032 Msa0930940:CDS 60.0%
GCTGTGGGCGAGGTTATTGG+TGG + chr6_2:80108281-80108300 Msa0930940:CDS 60.0%
! GGCCTCGGCTACTTTCTCAG+CGG - chr6_2:80108483-80108502 None:intergenic 60.0%
GAAGGACGAGGGGTAGGGGT+AGG - chr6_2:80107816-80107835 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 80107543 80110338 80107543 ID=Msa0930940;Name=Msa0930940
chr6_2 mRNA 80107543 80110338 80107543 ID=Msa0930940-mRNA-1;Parent=Msa0930940;Name=Msa0930940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|1|1|3|218|454
chr6_2 exon 80107543 80108526 80107543 ID=Msa0930940-mRNA-1:exon:13998;Parent=Msa0930940-mRNA-1
chr6_2 exon 80109396 80109674 80109396 ID=Msa0930940-mRNA-1:exon:13999;Parent=Msa0930940-mRNA-1
chr6_2 exon 80109881 80110338 80109881 ID=Msa0930940-mRNA-1:exon:14000;Parent=Msa0930940-mRNA-1
chr6_2 five_prime_UTR 80107543 80107680 80107543 ID=Msa0930940-mRNA-1:five_prime_utr;Parent=Msa0930940-mRNA-1
chr6_2 CDS 80107681 80108526 80107681 ID=Msa0930940-mRNA-1:cds;Parent=Msa0930940-mRNA-1
chr6_2 CDS 80109396 80109674 80109396 ID=Msa0930940-mRNA-1:cds;Parent=Msa0930940-mRNA-1
chr6_2 CDS 80109881 80110120 80109881 ID=Msa0930940-mRNA-1:cds;Parent=Msa0930940-mRNA-1
chr6_2 three_prime_UTR 80110121 80110338 80110121 ID=Msa0930940-mRNA-1:three_prime_utr;Parent=Msa0930940-mRNA-1
Gene Sequence

>Msa0930940

ATGGACGATGTAAAAGACAAGATGAAAGGATTCATCAAGAAAGTTAACAACCCTTTCACTTCTTCTTCTTCTGGTAAATTCAAAGGCCAAGGTCGAGTCTTGGGTTCTTCTTCTACACCTGCAAATTCCATTCCTACCCCTACCCCTCGTCCTTCTCAGAACCCTAATCCCAAACCCAAACCTACTCCACCGATCGCTTCAGATCAAAGCAAAATCGATAAACCACGCAAACCCGCAGATGGCTTTGATCCATTTGATTCATTCGTCACTTCTTCTCAAAGATCTCAAAATGGCTATTCACTCAACGTATATGAATGTCCAATTTGTAAACAACCCTTTCGATCCGAGGACGAGGTTTCTGAACACGTGGAATCTTGTTTGAGTAACCCAATTGAAAACGATGATGATGTGTCAAAATTGAAAGAGAGTCAAGTTTCTGAGTCTAATACTGAATTGGAGATTTCTATTGGTACTTATGTTTCAGGGAATCCGTCTGAAGGTTCTGTTGATATTGTTCTTAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAATGTTAAGTTTAGGAAGATTAGGATGGGTAATCCAAAGATTAAAGAAGCTGTGGGCGAGGTTATTGGTGGTGTTGAATTGCTGAGTTTGTTAGGATTTGAACTTAAAGAGGAGAACGGAGAGACATGGGCATTCATGGAGGTTCCTACCGAGGAGAAAGTTAATTTGATCAAGAAAGCAATTGTGTTGTTGGAACCACAATTGGTTCAAGATACTCCAAAGAGAGAAACTTTAACACCTACCATTTCCGCTGAGAAAGTAGCCGAGGCCGAACCAAAAAAGATTGACAGACAGGTGAAGGTCTTCTTTGCTGTCTCTGAAAGTGTTGCAGCTAGAATTGAGCTACCAGATTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATCCCAAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCGAAGAAGAGATACACAAGAACTATTATTAGGATTCAGTTTTCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTACTGCTCTGTATGAGTTTGTGAGCTCTGCTTTAAAAGAATCATGTTTGGAATTTGAGCTAATGCATCCTGTAGTTGTTCAACGGCGTGTAATCCCATGTTTCCCAAAAGCAGGGCAAAAAGCCAAAACGATAGAGGAAGAAGACCTGGTGCCTTCTGCCCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTGGAAATCAGTGAACCACTTGTAAATGGTTAA

Protein sequence

>Msa0930940

MDDVKDKMKGFIKKVNNPFTSSSSGKFKGQGRVLGSSSTPANSIPTPTPRPSQNPNPKPKPTPPIASDQSKIDKPRKPADGFDPFDSFVTSSQRSQNGYSLNVYECPICKQPFRSEDEVSEHVESCLSNPIENDDDVSKLKESQVSESNTELEISIGTYVSGNPSEGSVDIVLKLLRNIVKEPENVKFRKIRMGNPKIKEAVGEVIGGVELLSLLGFELKEENGETWAFMEVPTEEKVNLIKKAIVLLEPQLVQDTPKRETLTPTISAEKVAEAEPKKIDRQVKVFFAVSESVAARIELPDSFYKRSAEEVRREAELRRKKIEESQLLIPKSLKEKQAKAAKKRYTRTIIRIQFSDGVVLQGVFAPWEPTTALYEFVSSALKESCLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG*