AlfalfaGEDB | Msa0931810

M. sativa cultivar zhongmu-4 / Msa0931810

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0931810	XP_013452962.1	80.665	662	118	5	1	653	1	661	0.0	1074

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0931810	sp\|F4HQ22\|LRL24_ARATH	43.947	603	281	22	52	640	35	594	6.61e-141	427

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0388410	Msa0931810	0.957967	7.502029e-116	-8.615850e-47
Msa0638280	Msa0931810	0.806050	9.930317e-50	-8.615850e-47
Msa0638320	Msa0931810	0.806852	6.726561e-50	-8.615850e-47
Msa0677270	Msa0931810	0.800218	1.597821e-48	-8.615850e-47
Msa0924570	Msa0931810	0.964783	9.175582e-124	-8.615850e-47
Msa0931810	Msa0931880	0.995472	1.320019e-216	-8.615850e-47
Msa0931810	Msa0998340	0.847195	1.348032e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0931810	MtrunA17_Chr6g0483821	80.665	662	118	5	1	653	1	661	1074
Msa0931810	MtrunA17_Chr6g0484051	61.792	636	224	8	28	653	23	649	783
Msa0931810	MtrunA17_Chr6g0483851	61.252	671	184	11	54	653	47	712	743
Msa0931810	MtrunA17_Chr6g0483981	83.820	377	61	0	277	653	193	569	674
Msa0931810	MtrunA17_Chr6g0484021	85.523	373	52	1	280	650	233	605	672
Msa0931810	MtrunA17_Chr6g0484041	82.888	374	64	0	280	653	251	624	660
Msa0931810	MtrunA17_Chr6g0483791	56.508	653	225	16	43	653	35	670	657
Msa0931810	MtrunA17_Chr6g0484071	83.333	360	60	0	294	653	1	360	635
Msa0931810	MtrunA17_Chr8g0391231	50.226	665	286	17	12	652	3	646	602
Msa0931810	MtrunA17_Chr6g0483811	79.444	360	73	1	294	653	1	359	597

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0931810	AT1G66920.2	43.947	603	281	22	52	640	35	594	6.72e-142	427
Msa0931810	AT1G67000.1	40.916	655	317	25	35	650	242	865	1.46e-141	435
Msa0931810	AT1G67000.1	32.900	231	136	11	52	279	36	250	1.00e-18	91.3
Msa0931810	AT1G66920.1	44.040	604	271	21	52	640	35	586	3.35e-141	425
Msa0931810	AT5G38250.1	40.165	605	305	15	54	645	41	601	1.69e-136	413
Msa0931810	AT1G66910.2	39.082	632	327	18	53	652	41	646	5.20e-134	408
Msa0931810	AT5G38260.1	40.496	605	304	19	53	638	40	607	1.17e-133	407
Msa0931810	AT1G66910.1	38.629	642	319	18	53	652	41	649	2.69e-133	407
Msa0931810	AT1G66930.2	40.032	632	326	21	37	640	240	846	5.11e-130	405
Msa0931810	AT1G66930.2	34.375	192	109	11	54	242	37	214	1.53e-16	84.3

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Find 134 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAAACTTGGTCAAGG+GGG	0.629580	6_2:+81810408	Msa0931810:CDS
AAACCATTGCATCTTTAAGT+TGG	0.402612	6_2:+81810670	Msa0931810:CDS
AAAGCTGGTTGATGTTGTTG+TGG	0.535503	6_2:-81808514	None:intergenic
AAATGCCTATTCCACACTTC+TGG	0.331409	6_2:-81810915	None:intergenic
AACATCTCTTATCCGTTCTG+GGG	0.639160	6_2:+81808592	Msa0931810:CDS
AACCATTGCATCTTTAAGTT+GGG	0.418171	6_2:+81810671	Msa0931810:CDS
AACTCATTCAAAATTAAACT+TGG	0.473814	6_2:+81810399	Msa0931810:CDS
AAGATATTGAATGCATCAAA+AGG	0.488296	6_2:+81810483	Msa0931810:CDS
AAGTAAGTATCATTATATTG+AGG	0.577106	6_2:-81808787	None:intergenic
AAGTCTGATGTTTACAGTTA+TGG	0.368936	6_2:+81810954	Msa0931810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGAATTGAAAATGAGGA+GGG	-	chr6_2:81808380-81808399	None:intergenic	30.0%
ATGAAGAATTGAAAATGAGG+AGG	-	chr6_2:81808381-81808400	None:intergenic	30.0%
TTCTTCATTTCCGAACATAA+TGG	+	chr6_2:81808393-81808412	Msa0931810:exon	30.0%
GATATCCTCACAAAATTTCA+CGG	+	chr6_2:81808693-81808712	Msa0931810:CDS	30.0%
AGAGTTGGAAGATATTCAAA+TGG	-	chr6_2:81808823-81808842	None:intergenic	30.0%
CCATTATAATCTTTCACAAC+AGG	-	chr6_2:81809018-81809037	None:intergenic	30.0%
CCTGTTGTGAAAGATTATAA+TGG	+	chr6_2:81809015-81809034	Msa0931810:CDS	30.0%
TGAAGTTCTTGAAAATGGTT+TGG	+	chr6_2:81809050-81809069	Msa0931810:CDS	30.0%
TAATAAGCAATAGATCCATC+TGG	-	chr6_2:81809201-81809220	None:intergenic	30.0%
TGACGTATGTAAACTATGAA+TGG	-	chr6_2:81809427-81809446	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	81808350	81811407	81808350	ID=Msa0931810;Name=Msa0931810
chr6_2	mRNA	81808350	81811407	81808350	ID=Msa0931810-mRNA-1;Parent=Msa0931810;Name=Msa0931810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=62\|1\|1\|1\|1\|1\|3\|100\|653
chr6_2	exon	81808350	81809240	81808350	ID=Msa0931810-mRNA-1:exon:14459;Parent=Msa0931810-mRNA-1
chr6_2	exon	81809844	81809876	81809844	ID=Msa0931810-mRNA-1:exon:14460;Parent=Msa0931810-mRNA-1
chr6_2	exon	81810208	81811407	81810208	ID=Msa0931810-mRNA-1:exon:14461;Parent=Msa0931810-mRNA-1
chr6_2	five_prime_UTR	81808350	81808411	81808350	ID=Msa0931810-mRNA-1:five_prime_utr;Parent=Msa0931810-mRNA-1
chr6_2	CDS	81808412	81809240	81808412	ID=Msa0931810-mRNA-1:cds;Parent=Msa0931810-mRNA-1
chr6_2	CDS	81809844	81809876	81809844	ID=Msa0931810-mRNA-1:cds;Parent=Msa0931810-mRNA-1
chr6_2	CDS	81810208	81811307	81810208	ID=Msa0931810-mRNA-1:cds;Parent=Msa0931810-mRNA-1
chr6_2	three_prime_UTR	81811308	81811407	81811308	ID=Msa0931810-mRNA-1:three_prime_utr;Parent=Msa0931810-mRNA-1

Gene Sequence

>Msa0931810

ATGGATAAGCATATCTCTTTGCTCATGAATATTACATACATATCTTTCTTCTTCTTAGTAATAACAATTACCACTTTTTTCCCACATCAATCCCACTCTCAACCACAACAACATCAACCAGCTTTCAATTATTCGAGTTGTAGAGACATCAACAGCTCCTACAACTGCGGAAGAATCACCAACATCTCTTATCCGTTCTGGGGACCAAATCGTGCTTCTCCCTGTGGTGCCGGCGAATTTTTTCGCCTTAACTGCCACGAAAACAATATTACTACGATTCTGATATCCTCACAAAATTTCACGGTACTTGACATCAACACAACAGCTCACACCAACAAACTCAAAAGAACAGACCTTGATGAAAATCTTTGTTTTCCTCAATATAATGATACTTACTTGTTTCCACCTCCATTTGAATATCTTCCAACTCTCAAGAACATCACCATATTCTACAATTGTACTCAATCTCCTCCTATTTCACCTAAAAATCCTATATGTGAATCTCCGAATCATGCTTTCTATATTATCAGTGATGAAGATAAGCCGTTGGAAGAATCAAGGAATTGTAGGAGACATATTCATGTGCCAGTAGGAGCAGATTTTCCTGTTGTGAAAGATTATAATGGTTATTTTGAGCGTGAAGTTCTTGAAAATGGTTTGGATAAGGGTTTTGAGTTGAATTATACTATGAAAGAGGAATGCTTAAGGTGTTTGGGAAATGAAGGAGGAGATTGTTCGAGTGATTATATTGAAAATTATATTCAATTCTGCTATTATGATAATTGTCCAGATGGATCTATTGCTTATTACTGTTCTTCTCATCACAAAAATCCGGTGAATTGGAAGAGGAAACTCGTCATTGGTGTTGGAAGTGCAGCAATGGTAGCATTGCTGATGTGCGTCATAATTTGTTGTTATAGAGGCAAGTCATCAGTACTACAAATAAAATTTCGGCTTAAGACAAAGAATGATATAAACATTGAATCATTTTTAAGAGATCATGGAGCTCTATTGCAAAAAAGATATAAATTTTCAGAAATAAAGAAAATGACAAACTCATTCAAAATTAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAGTTATTCAATGGTTGTCTTGTGGCAGTGAAGATATTGAATGCATCAAAAGGAAATGGTGAAGACTTTATTAATGAGGTTGCTAGTATTACTAGAACCTCACATGTTAATGTCGTCGCCCTTCTTGGATTTTGTTTTGAAGGCCGTAAAAAAGCTCTTGTGTATGAATTTATGCCAAATGGTTCTCTTGACAAATATATTTACATTAAGGGACCCGAAACCATTGCATCTTTAAGTTGGGAGAATATGCATCAAATTGCGAAAGGGATGGCTCGTGGGCTAGAGTATTTGCATAGAGGATGTGCTACTAGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTAGATGAGAATTTTTGTCCAAAGATTTCAGATTTCGGACTTGCAAAGCTTTGCCTCAAAAAAGACAGTATTGTTTCGATGTCGGATCAAAGAGGGACAATGGGGTATGTAGCTCCAGAAGTGTGGAATAGGCATTTTGGAGGAGTTTCACACAAGTCTGATGTTTACAGTTATGGAATGATGCTATTAGAAATGGTGGGTGGGAGGAAAAATATTAATGCTGATGCAAGTCACACAAGTGAGATATACTTTCCTCATTGGGTATACAATAAGCTTGAGCTTGGCACTAATTTGAGACCTGATGGGGTAATGGATACAGAAGAAGATGAGATTGCAAAGAGAATGACCATTGTGGGTTTGTGGTGTATTCAAACATTTCCGAATGGCAGACCTACAATGAGTAAAGTAGTTGAAATGTTAGAAGTTGACATTAATTCGTTGGAAGTACCACCAAAACCATTACTTTCGTCTCCTACTAGATCGGTATCTGAGTCTTGCACGTCTTAA

Protein sequence

>Msa0931810

MDKHISLLMNITYISFFFLVITITTFFPHQSHSQPQQHQPAFNYSSCRDINSSYNCGRITNISYPFWGPNRASPCGAGEFFRLNCHENNITTILISSQNFTVLDINTTAHTNKLKRTDLDENLCFPQYNDTYLFPPPFEYLPTLKNITIFYNCTQSPPISPKNPICESPNHAFYIISDEDKPLEESRNCRRHIHVPVGADFPVVKDYNGYFEREVLENGLDKGFELNYTMKEECLRCLGNEGGDCSSDYIENYIQFCYYDNCPDGSIAYYCSSHHKNPVNWKRKLVIGVGSAAMVALLMCVIICCYRGKSSVLQIKFRLKTKNDINIESFLRDHGALLQKRYKFSEIKKMTNSFKIKLGQGGFGVVYKGKLFNGCLVAVKILNASKGNGEDFINEVASITRTSHVNVVALLGFCFEGRKKALVYEFMPNGSLDKYIYIKGPETIASLSWENMHQIAKGMARGLEYLHRGCATRILHFDIKPHNILLDENFCPKISDFGLAKLCLKKDSIVSMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINADASHTSEIYFPHWVYNKLELGTNLRPDGVMDTEEDEIAKRMTIVGLWCIQTFPNGRPTMSKVVEMLEVDINSLEVPPKPLLSSPTRSVSESCTS*