Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932060 | sp|P43333|RU2A_ARATH | 74.894 | 235 | 44 | 2 | 1 | 221 | 1 | 234 | 9.10e-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932060 | A0A072UG25 | 93.818 | 275 | 3 | 1 | 1 | 261 | 1 | 275 | 8.16e-180 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0932060 | Msa1356510 | 0.837067 | 6.469438e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932060 | MtrunA17_Chr6g0449031 | 93.818 | 275 | 3 | 1 | 1 | 261 | 1 | 275 | 0.0 | 504 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932060 | AT1G09760.1 | 74.894 | 235 | 44 | 2 | 1 | 221 | 1 | 234 | 9.25e-119 | 340 |
Find 75 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTAGATGGTTTATAAT+TGG | 0.204151 | 6_3:-91092 | Msa0932060:three_prime_UTR |
| AGAGCAAATTATTGCTATTA+AGG | 0.211984 | 6_3:-93906 | Msa0932060:intron |
| ATCCAACTCGCGCTCTTTAA+TGG | 0.228091 | 6_3:+95283 | None:intergenic |
| CGACAATGAGATTGTCAAAT+TGG | 0.231901 | 6_3:-94973 | Msa0932060:CDS |
| TTCTTAGATGGTTTATAATT+GGG | 0.232367 | 6_3:-91091 | Msa0932060:three_prime_UTR |
| ATAGGACATAGTCAATTATT+TGG | 0.246263 | 6_3:-90916 | Msa0932060:three_prime_UTR |
| CAAATCATACCTCCAATATT+AGG | 0.247606 | 6_3:+94882 | None:intergenic |
| GCTGAAATCCCTCCGAGTTT+TGG | 0.276825 | 6_3:-94610 | Msa0932060:CDS |
| ACTAGAATTAATCCTAATAT+TGG | 0.297232 | 6_3:-94894 | Msa0932060:CDS |
| ATATCTGTAATCGAAAATTT+AGG | 0.313621 | 6_3:-95245 | Msa0932060:CDS |
| GTACTTCTCTGTTTCTTAGA+TGG | 0.315719 | 6_3:-91103 | Msa0932060:three_prime_UTR |
| TTCACCGATTCGTGGTGTTC+CGG | 0.324648 | 6_3:-96249 | Msa0932060:five_prime_UTR |
| ACAACTTGAATGAATCATTA+GGG | 0.327978 | 6_3:-91001 | Msa0932060:three_prime_UTR |
| TACAACTTGAATGAATCATT+AGG | 0.348000 | 6_3:-91002 | Msa0932060:three_prime_UTR |
| TGTGTATCTTTAGATTCATC+AGG | 0.370931 | 6_3:+91775 | None:intergenic |
| GAAACATTCTTCAAACTAAT+AGG | 0.378950 | 6_3:-90934 | Msa0932060:three_prime_UTR |
| TCTTAGATGGTTTATAATTG+GGG | 0.382297 | 6_3:-91090 | Msa0932060:three_prime_UTR |
| CACTACTCATTAACAACAAC+AGG | 0.386369 | 6_3:-94920 | Msa0932060:CDS |
| GACTCACTGCTGACCTGATC+TGG | 0.386465 | 6_3:-95328 | Msa0932060:CDS |
| GTACCCAATCGGTTAAGATT+TGG | 0.397742 | 6_3:+94942 | None:intergenic |
| AGACTAAGGAACTGCAGCTT+TGG | 0.400575 | 6_3:+94687 | None:intergenic |
| TAGACAACAGTTAGAATAGA+AGG | 0.407383 | 6_3:+90853 | None:intergenic |
| CAATTTGACAATCTCATTGT+CGG | 0.414263 | 6_3:+94974 | None:intergenic |
| ATAAATCTACTGTGTCAAAT+TGG | 0.424527 | 6_3:+94997 | None:intergenic |
| GAAACATCTGGAGTTTCAAC+AGG | 0.431038 | 6_3:+93977 | None:intergenic |
| TTAATAGCAATAATTTGCTC+TGG | 0.437146 | 6_3:+93908 | None:intergenic |
| TCTCTTCTTTCACCGATTCG+TGG | 0.441773 | 6_3:-96257 | Msa0932060:five_prime_UTR |
| TCCGTAGCTTCTGAAACATC+TGG | 0.448794 | 6_3:+93965 | None:intergenic |
| AAAGAAGAGAGGAGAAGAGA+GGG | 0.452830 | 6_3:+96270 | None:intergenic |
| TTACCAAATCTTAACCGATT+GGG | 0.454175 | 6_3:-94945 | Msa0932060:CDS |
| TGATTCTACTGCAATGGAAC+AGG | 0.456679 | 6_3:-91737 | Msa0932060:intron |
| TGTTAACAGGCACTGAAGTC+TGG | 0.458610 | 6_3:-91874 | Msa0932060:intron |
| AGAACTAGTGTGTGTAAATT+CGG | 0.472213 | 6_3:+94762 | None:intergenic |
| CTTACCAAATCTTAACCGAT+TGG | 0.476759 | 6_3:-94946 | Msa0932060:CDS |
| CACTAGTTCTCACAAACAAC+AGG | 0.490673 | 6_3:-94749 | Msa0932060:CDS |
| GGAGTAGGAGGAATCACTTT+GGG | 0.492669 | 6_3:+93929 | None:intergenic |
| TTAATGGTATTGAAGAAATG+AGG | 0.495834 | 6_3:+95299 | None:intergenic |
| CTTTCTTGAAGTCCAAAACT+CGG | 0.500459 | 6_3:+94598 | None:intergenic |
| CATATAAAGAGATGCAGACT+TGG | 0.506354 | 6_3:-90877 | Msa0932060:three_prime_UTR |
| GAAAGAAGAGAGGAGAAGAG+AGG | 0.520416 | 6_3:+96269 | None:intergenic |
| GCAATAATTTGCTCTGGAGT+AGG | 0.520654 | 6_3:+93914 | None:intergenic |
| AGAATTAATCCTAATATTGG+AGG | 0.520985 | 6_3:-94891 | Msa0932060:intron |
| GGGTTCTTGAATCAAAGTAT+TGG | 0.521722 | 6_3:-91142 | Msa0932060:three_prime_UTR |
| TAAGGAACTGCAGCTTTGGA+AGG | 0.529538 | 6_3:+94691 | None:intergenic |
| TCCAGATGTTTCAGAAGCTA+CGG | 0.537922 | 6_3:-93966 | Msa0932060:CDS |
| CTTAGATGGTTTATAATTGG+GGG | 0.539990 | 6_3:-91089 | Msa0932060:three_prime_UTR |
| TCACAGACACGACGGAGGAA+CGG | 0.544393 | 6_3:+96217 | None:intergenic |
| CTTGAAGTCCAAAACTCGGA+GGG | 0.545316 | 6_3:+94602 | None:intergenic |
| TAATGAGTAGTGTACCCAAT+CGG | 0.554266 | 6_3:+94931 | None:intergenic |
| TGGAGTAGGAGGAATCACTT+TGG | 0.558536 | 6_3:+93928 | None:intergenic |
| GTGACCGGAACACCACGAAT+CGG | 0.559955 | 6_3:+96245 | None:intergenic |
| GGAGGAACGGAAAGAGTGAC+CGG | 0.560444 | 6_3:+96230 | None:intergenic |
| ATAATTTGCTCTGGAGTAGG+AGG | 0.562316 | 6_3:+93917 | None:intergenic |
| CTTCAAGAAAGTGAAAGATA+AGG | 0.562596 | 6_3:-94586 | Msa0932060:intron |
| TAATACTGATTCTACTGCAA+TGG | 0.563664 | 6_3:-91743 | Msa0932060:CDS |
| TATTGTTGTCAAGAAGACTA+AGG | 0.567496 | 6_3:+94673 | None:intergenic |
| TACCATTAAAGAGCGCGAGT+TGG | 0.572232 | 6_3:-95285 | Msa0932060:CDS |
| CTCGGAGGGATTTCAGCTTG+TGG | 0.583753 | 6_3:+94616 | None:intergenic |
| TCTGGAGTTTCAACAGGCGC+TGG | 0.587258 | 6_3:+93983 | None:intergenic |
| ATAGACGTAATAGTATTAAG+TGG | 0.589985 | 6_3:-90803 | Msa0932060:three_prime_UTR |
| CTAGTGTGTGTAAATTCGGT+AGG | 0.599258 | 6_3:+94766 | None:intergenic |
| GCAGCAGCTATTCTCCAAGA+GGG | 0.617176 | 6_3:+91057 | None:intergenic |
| AAGGAACTGCAGCTTTGGAA+GGG | 0.618926 | 6_3:+94692 | None:intergenic |
| ATCTCTTTATATGAAGAACA+TGG | 0.625651 | 6_3:+90887 | None:intergenic |
| AGCTTTGGAAGGGATGTCAA+AGG | 0.641417 | 6_3:+94702 | None:intergenic |
| CGAAAATTTAGGTGCCACAG+AGG | 0.647646 | 6_3:-95234 | Msa0932060:intron |
| TCTTGAAGTCCAAAACTCGG+AGG | 0.658139 | 6_3:+94601 | None:intergenic |
| ACGAATCGGTGAAAGAAGAG+AGG | 0.662143 | 6_3:+96259 | None:intergenic |
| AGCAGCAGCTATTCTCCAAG+AGG | 0.662757 | 6_3:+91056 | None:intergenic |
| CAGCAGCTATTCTCCAAGAG+GGG | 0.677943 | 6_3:+91058 | None:intergenic |
| AGATGTTTCAGAAGCTACGG+AGG | 0.681835 | 6_3:-93963 | Msa0932060:CDS |
| GATAATATTACATACCTCTG+TGG | 0.697109 | 6_3:+95220 | None:intergenic |
| AGAAGTACTCACAGACACGA+CGG | 0.697429 | 6_3:+96209 | None:intergenic |
| GAGCGCGAGTTGGATCTGAG+AGG | 0.748692 | 6_3:-95275 | Msa0932060:CDS |
| AGTACTCACAGACACGACGG+AGG | 0.750436 | 6_3:+96212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATAGTTACA+AGG | + | chr6_3:91924-91943 | None:intergenic | 10.0% |
| !!! | TTTTCTTAAAATTATATTTG+TGG | - | chr6_3:92910-92929 | Msa0932060:intron | 10.0% |
| !! | AGAATTAAAAATAGAATAAT+AGG | + | chr6_3:93713-93732 | None:intergenic | 10.0% |
| !! | AAAGAATAGTAATAAAATAA+TGG | + | chr6_3:95675-95694 | None:intergenic | 10.0% |
| !! | AGAAAATTATAGATTTGTAT+AGG | - | chr6_3:91231-91250 | Msa0932060:intron | 15.0% |
| !! | AAAATAATATGAATTCCATT+TGG | - | chr6_3:91553-91572 | Msa0932060:intron | 15.0% |
| !! | AAATAATATGAATTCCATTT+GGG | - | chr6_3:91554-91573 | Msa0932060:intron | 15.0% |
| !! | TTACAAAAAAAGTGAATTAT+AGG | - | chr6_3:92458-92477 | Msa0932060:intron | 15.0% |
| !! | TTACAATGCAAAAAAAAAAA+CGG | - | chr6_3:92969-92988 | Msa0932060:intron | 15.0% |
| !! | TAAATTCATTATCAGTTTAA+TGG | + | chr6_3:93857-93876 | None:intergenic | 15.0% |
| !! | CAATAAAGAATTAATCAAAT+GGG | + | chr6_3:94106-94125 | None:intergenic | 15.0% |
| !!! | TTTGATATTTTCTTTAACTA+AGG | - | chr6_3:94442-94461 | Msa0932060:intron | 15.0% |
| !!! | TTAAGTATTGTTTTTGTTTT+AGG | - | chr6_3:94690-94709 | Msa0932060:CDS | 15.0% |
| !! | ATATATAAGAAATCTATACT+AGG | + | chr6_3:95174-95193 | None:intergenic | 15.0% |
| !! | ATAGTAATAAAATAATGGTT+GGG | + | chr6_3:95670-95689 | None:intergenic | 15.0% |
| !! | AATAGTAATAAAATAATGGT+TGG | + | chr6_3:95671-95690 | None:intergenic | 15.0% |
| !!! | GAGACTCTTTTTTTTTTTTT+TGG | + | chr6_3:90800-90819 | None:intergenic | 20.0% |
| !! | AAAAAAAAGAGTCTCTTATT+AGG | - | chr6_3:90805-90824 | Msa0932060:three_prime_UTR | 20.0% |
| !!! | TGAATTTTCTATGCTTTATA+TGG | - | chr6_3:90953-90972 | Msa0932060:three_prime_UTR | 20.0% |
| !!! | AAAGTTGTTTAATTTCATGT+GGG | - | chr6_3:91039-91058 | Msa0932060:three_prime_UTR | 20.0% |
| !! | TGATTATTTATGCTTCATTA+TGG | - | chr6_3:91258-91277 | Msa0932060:intron | 20.0% |
| !! | GATTATTTATGCTTCATTAT+GGG | - | chr6_3:91259-91278 | Msa0932060:intron | 20.0% |
| !!! | TTCATATTATTTTCATGTCA+AGG | + | chr6_3:91546-91565 | None:intergenic | 20.0% |
| !! | ATATCTGTAATCGAAAATTT+AGG | - | chr6_3:91863-91882 | Msa0932060:CDS | 20.0% |
| !!! | TTCAGTTAAATAATTTTGAC+AGG | - | chr6_3:92014-92033 | Msa0932060:intron | 20.0% |
| !!! | TCAGTTAAATAATTTTGACA+GGG | - | chr6_3:92015-92034 | Msa0932060:intron | 20.0% |
| !! | ACTAGAATTAATCCTAATAT+TGG | - | chr6_3:92214-92233 | Msa0932060:intron | 20.0% |
| !! | ACCAAAGAAAAGATAAATAT+GGG | + | chr6_3:92568-92587 | None:intergenic | 20.0% |
| !! | AACCAAAGAAAAGATAAATA+TGG | + | chr6_3:92569-92588 | None:intergenic | 20.0% |
| !! | CAAACAAAAATGCATAAAAA+AGG | + | chr6_3:93291-93310 | None:intergenic | 20.0% |
| !! | TTGTAAAATGAATTTAACTG+TGG | - | chr6_3:93749-93768 | Msa0932060:intron | 20.0% |
| !! | TTTATAATTATCTGCATTTG+AGG | - | chr6_3:93979-93998 | Msa0932060:CDS | 20.0% |
| !! | TTATAATTATCTGCATTTGA+GGG | - | chr6_3:93980-93999 | Msa0932060:CDS | 20.0% |
| !! | ATAGCATAATTTCAACTTAT+AGG | + | chr6_3:94056-94075 | None:intergenic | 20.0% |
| !! | CCAATAAAGAATTAATCAAA+TGG | + | chr6_3:94107-94126 | None:intergenic | 20.0% |
| !! | CCATTTGATTAATTCTTTAT+TGG | - | chr6_3:94104-94123 | Msa0932060:intron | 20.0% |
| !! | TTGATTAATTCTTTATTGGT+TGG | - | chr6_3:94108-94127 | Msa0932060:intron | 20.0% |
| !! | ACATAGTTATATACTATGTA+TGG | + | chr6_3:94386-94405 | None:intergenic | 20.0% |
| !! | AGTTAAAGAAAATATCAAAC+AGG | + | chr6_3:94441-94460 | None:intergenic | 20.0% |
| !! | ATTAGATAATCATTCATTTC+TGG | - | chr6_3:94663-94682 | Msa0932060:CDS | 20.0% |
| !! | AAGTATAATTACATATCATG+GGG | + | chr6_3:95565-95584 | None:intergenic | 20.0% |
| !! | CAAGTATAATTACATATCAT+GGG | + | chr6_3:95566-95585 | None:intergenic | 20.0% |
| !! | ACAAGTATAATTACATATCA+TGG | + | chr6_3:95567-95586 | None:intergenic | 20.0% |
| !! | GCTTAATTAACTGTAATTAT+AGG | + | chr6_3:95701-95720 | None:intergenic | 20.0% |
| !! | TTTCTTAGATGGTTTATAAT+TGG | - | chr6_3:96016-96035 | Msa0932060:intron | 20.0% |
| !! | TTCTTAGATGGTTTATAATT+GGG | - | chr6_3:96017-96036 | Msa0932060:intron | 20.0% |
| ! | ACTGAAAATTAAGAAGTTGA+AGG | + | chr6_3:90934-90953 | None:intergenic | 25.0% |
| !! | CAAAGTTGTTTAATTTCATG+TGG | - | chr6_3:91038-91057 | Msa0932060:three_prime_UTR | 25.0% |
| !! | AAGTTGTTTAATTTCATGTG+GGG | - | chr6_3:91040-91059 | Msa0932060:three_prime_UTR | 25.0% |
| !!! | ATAAGTTTTGTGAGACTAAT+TGG | + | chr6_3:91459-91478 | None:intergenic | 25.0% |
| !!! | ATTTGGGTTGTAGTAATAAT+GGG | - | chr6_3:91570-91589 | Msa0932060:intron | 25.0% |
| ! | TATTACTAGAATGATGACTT+TGG | + | chr6_3:91722-91741 | None:intergenic | 25.0% |
| !! | TTAATGGTATTGAAGAAATG+AGG | + | chr6_3:91812-91831 | None:intergenic | 25.0% |
| ! | AATTCATGAACATATCAAGT+AGG | + | chr6_3:92060-92079 | None:intergenic | 25.0% |
| ! | ATAAATCTACTGTGTCAAAT+TGG | + | chr6_3:92114-92133 | None:intergenic | 25.0% |
| ! | AGAATTAATCCTAATATTGG+AGG | - | chr6_3:92217-92236 | Msa0932060:intron | 25.0% |
| !! | ACCCATATTTATCTTTTCTT+TGG | - | chr6_3:92564-92583 | Msa0932060:intron | 25.0% |
| ! | TGCAAAAAAAAAAACGGAAA+TGG | - | chr6_3:92975-92994 | Msa0932060:intron | 25.0% |
| ! | AAAAAAAAAAACGGAAATGG+TGG | - | chr6_3:92978-92997 | Msa0932060:intron | 25.0% |
| !! | GAAAAACTTGTTTGAATCAA+AGG | - | chr6_3:93076-93095 | Msa0932060:intron | 25.0% |
| !!! | TTAATAGCAATAATTTGCTC+TGG | + | chr6_3:93203-93222 | None:intergenic | 25.0% |
| !! | AGAGCAAATTATTGCTATTA+AGG | - | chr6_3:93202-93221 | Msa0932060:intron | 25.0% |
| ! | TTCATTCTAAATTGAACACA+AGG | + | chr6_3:93249-93268 | None:intergenic | 25.0% |
| ! | AATAGAATAATAGGTACTTC+AGG | + | chr6_3:93704-93723 | None:intergenic | 25.0% |
| !! | AACTGATAATGAATTTAGTC+AGG | - | chr6_3:93860-93879 | Msa0932060:intron | 25.0% |
| !! | AACTGATAATGAATTTAGTC+AGG | - | chr6_3:93860-93879 | Msa0932060:intron | 25.0% |
| ! | AGTTGAAATTATGCTATAAG+TGG | - | chr6_3:94059-94078 | Msa0932060:intron | 25.0% |
| ! | GTTGAAATTATGCTATAAGT+GGG | - | chr6_3:94060-94079 | Msa0932060:intron | 25.0% |
| ! | TATGTATGGCTTACTATAAT+AGG | + | chr6_3:94372-94391 | None:intergenic | 25.0% |
| !!! | TTTTGCTATAATCCAGAATA+AGG | + | chr6_3:94473-94492 | None:intergenic | 25.0% |
| ! | TATTCTGGATTATAGCAAAA+TGG | - | chr6_3:94473-94492 | Msa0932060:intron | 25.0% |
| !! | TTTAGGCTTAATTACACTTT+TGG | - | chr6_3:94707-94726 | Msa0932060:CDS | 25.0% |
| !!! | GAAAGAGTTGTTTTTTTAGA+GGG | + | chr6_3:94764-94783 | None:intergenic | 25.0% |
| ! | TGCAACAAAAAGTAAACTTA+GGG | + | chr6_3:94793-94812 | None:intergenic | 25.0% |
| ! | TTGCAACAAAAAGTAAACTT+AGG | + | chr6_3:94794-94813 | None:intergenic | 25.0% |
| !!! | TACTTTTTGACTCGAAATTA+GGG | + | chr6_3:94866-94885 | None:intergenic | 25.0% |
| !!! | TTACTTTTTGACTCGAAATT+AGG | + | chr6_3:94867-94886 | None:intergenic | 25.0% |
| ! | TTGCAACATAAAGTAAACTT+AGG | - | chr6_3:94922-94941 | Msa0932060:CDS | 25.0% |
| ! | TGCAACATAAAGTAAACTTA+GGG | - | chr6_3:94923-94942 | Msa0932060:CDS | 25.0% |
| !!! | TGGAAAGAGTTGTTTTTTTT+AGG | - | chr6_3:94950-94969 | Msa0932060:CDS | 25.0% |
| !!! | GGAAAGAGTTGTTTTTTTTA+GGG | - | chr6_3:94951-94970 | Msa0932060:CDS | 25.0% |
| !!! | GAAAGAGTTGTTTTTTTTAG+GGG | - | chr6_3:94952-94971 | Msa0932060:CDS | 25.0% |
| !!! | AAAGAGTTGTTTTTTTTAGG+GGG | - | chr6_3:94953-94972 | Msa0932060:CDS | 25.0% |
| !! | GTTTTCCAAAATTGTGATTT+TGG | + | chr6_3:94979-94998 | None:intergenic | 25.0% |
| !!! | ATCACAATTTTGGAAAACTT+AGG | - | chr6_3:94981-95000 | Msa0932060:CDS | 25.0% |
| !!! | TCACAATTTTGGAAAACTTA+GGG | - | chr6_3:94982-95001 | Msa0932060:CDS | 25.0% |
| !! | TGACATATCATCAGTTATTT+TGG | + | chr6_3:95199-95218 | None:intergenic | 25.0% |
| ! | AGTATAATTACATATCATGG+GGG | + | chr6_3:95564-95583 | None:intergenic | 25.0% |
| ! | TATACTTGTTCAGAACTAAT+TGG | - | chr6_3:95578-95597 | Msa0932060:intron | 25.0% |
| ! | CAATTGTGTATGAATTGTTT+AGG | - | chr6_3:95818-95837 | Msa0932060:intron | 25.0% |
| ! | GATACATTATTACTAACATG+AGG | + | chr6_3:95881-95900 | None:intergenic | 25.0% |
| !! | TTTCATTACATTCTTTTTGC+AGG | - | chr6_3:95906-95925 | Msa0932060:intron | 25.0% |
| ! | TCTTAGATGGTTTATAATTG+GGG | - | chr6_3:96018-96037 | Msa0932060:intron | 25.0% |
| ! | TACAACTTGAATGAATCATT+AGG | - | chr6_3:96106-96125 | Msa0932060:intron | 25.0% |
| ! | ACAACTTGAATGAATCATTA+GGG | - | chr6_3:96107-96126 | Msa0932060:intron | 25.0% |
| ! | GAAACATTCTTCAAACTAAT+AGG | - | chr6_3:96174-96193 | Msa0932060:intron | 25.0% |
| ! | ATAGGACATAGTCAATTATT+TGG | - | chr6_3:96192-96211 | Msa0932060:intron | 25.0% |
| ! | ATCTCTTTATATGAAGAACA+TGG | + | chr6_3:96224-96243 | None:intergenic | 25.0% |
| ! | ATAGACGTAATAGTATTAAG+TGG | - | chr6_3:96305-96324 | Msa0932060:five_prime_UTR | 25.0% |
| !!! | TTTCATGTGGGGTTATTTTT+AGG | - | chr6_3:91051-91070 | Msa0932060:three_prime_UTR | 30.0% |
| ! | AAGTCTAAAGTAACTTGCAA+TGG | - | chr6_3:91164-91183 | Msa0932060:three_prime_UTR | 30.0% |
| ATTTGAGCTTATCTACTTAC+TGG | + | chr6_3:91483-91502 | None:intergenic | 30.0% | |
| CATTATTACTACAACCCAAA+TGG | + | chr6_3:91571-91590 | None:intergenic | 30.0% | |
| !! | CATTTGGGTTGTAGTAATAA+TGG | - | chr6_3:91569-91588 | Msa0932060:intron | 30.0% |
| AGCCGTAAATTATAATTGCT+GGG | + | chr6_3:91612-91631 | None:intergenic | 30.0% | |
| GGAAAATTACAAAGTAGAGA+AGG | + | chr6_3:91674-91693 | None:intergenic | 30.0% | |
| GATAATATTACATACCTCTG+TGG | + | chr6_3:91891-91910 | None:intergenic | 30.0% | |
| ! | GAATTTGAGTTCCTTTGTAA+TGG | - | chr6_3:92075-92094 | Msa0932060:intron | 30.0% |
| CAATTTGACAATCTCATTGT+CGG | + | chr6_3:92137-92156 | None:intergenic | 30.0% | |
| TTACCAAATCTTAACCGATT+GGG | - | chr6_3:92163-92182 | Msa0932060:intron | 30.0% | |
| CAAATCATACCTCCAATATT+AGG | + | chr6_3:92229-92248 | None:intergenic | 30.0% | |
| AGAACTAGTGTGTGTAAATT+CGG | + | chr6_3:92349-92368 | None:intergenic | 30.0% | |
| TATTGTTGTCAAGAAGACTA+AGG | + | chr6_3:92438-92457 | None:intergenic | 30.0% | |
| CTTCAAGAAAGTGAAAGATA+AGG | - | chr6_3:92522-92541 | Msa0932060:intron | 30.0% | |
| AGAAAGTGAAAGATAAGGTA+AGG | - | chr6_3:92527-92546 | Msa0932060:intron | 30.0% | |
| GAAAAGATAAATATGGGTAG+TGG | + | chr6_3:92562-92581 | None:intergenic | 30.0% | |
| ATCAAAGCTGAGTAAAACAA+GGG | + | chr6_3:92739-92758 | None:intergenic | 30.0% | |
| TATCAAAGCTGAGTAAAACA+AGG | + | chr6_3:92740-92759 | None:intergenic | 30.0% | |
| TGAAAATGCAAATCAGATCT+TGG | - | chr6_3:92874-92893 | Msa0932060:intron | 30.0% | |
| GAAAATGCAAATCAGATCTT+GGG | - | chr6_3:92875-92894 | Msa0932060:intron | 30.0% | |
| TAAATTGAACACAAGGTGTA+TGG | + | chr6_3:93242-93261 | None:intergenic | 30.0% | |
| !! | TAGTCACTAGTGTTGTTTAA+TGG | - | chr6_3:93430-93449 | Msa0932060:intron | 30.0% |
| CACCATAAGCAATTTGTAAA+CGG | - | chr6_3:93502-93521 | Msa0932060:intron | 30.0% | |
| ACTATATCTTGTGATAGTAC+AGG | - | chr6_3:93614-93633 | Msa0932060:intron | 30.0% | |
| TGTCAAACCTATCAAATATC+AGG | - | chr6_3:93659-93678 | Msa0932060:intron | 30.0% | |
| GTCAAACCTATCAAATATCA+GGG | - | chr6_3:93660-93679 | Msa0932060:intron | 30.0% | |
| TATCCATTGCATTTACAGAA+AGG | + | chr6_3:93833-93852 | None:intergenic | 30.0% | |
| AACTATAAAACACATCGCAA+GGG | - | chr6_3:93887-93906 | Msa0932060:intron | 30.0% | |
| ! | AGCTTTCATATTGGTTAGAT+TGG | + | chr6_3:94316-94335 | None:intergenic | 30.0% |
| GTTAGCTATAGCTTTCATAT+TGG | + | chr6_3:94325-94344 | None:intergenic | 30.0% | |
| TTACTATAATAGGAAGGTTC+CGG | + | chr6_3:94362-94381 | None:intergenic | 30.0% | |
| TATGGCTTACTATAATAGGA+AGG | + | chr6_3:94368-94387 | None:intergenic | 30.0% | |
| AAGAAACATGTAAAACCACA+GGG | + | chr6_3:94566-94585 | None:intergenic | 30.0% | |
| ! | TCACAACTTTGGAAAACTTA+GGG | + | chr6_3:94735-94754 | None:intergenic | 30.0% |
| ! | ATCACAACTTTGGAAAACTT+AGG | + | chr6_3:94736-94755 | None:intergenic | 30.0% |
| ! | GTTTTCCAAAGTTGTGATTT+TGG | - | chr6_3:94738-94757 | Msa0932060:CDS | 30.0% |
| !!! | GGAAAGAGTTGTTTTTTTAG+AGG | + | chr6_3:94765-94784 | None:intergenic | 30.0% |
| CAACAAAAAGTAAACTTAGG+GGG | + | chr6_3:94791-94810 | None:intergenic | 30.0% | |
| GCAACAAAAAGTAAACTTAG+GGG | + | chr6_3:94792-94811 | None:intergenic | 30.0% | |
| !! | ACTTTTTGACTCGAAATTAG+GGG | + | chr6_3:94865-94884 | None:intergenic | 30.0% |
| GCAACATAAAGTAAACTTAG+GGG | - | chr6_3:94924-94943 | Msa0932060:CDS | 30.0% | |
| CAACATAAAGTAAACTTAGG+GGG | - | chr6_3:94925-94944 | Msa0932060:CDS | 30.0% | |
| !! | CACAATTTTGGAAAACTTAG+GGG | - | chr6_3:94983-95002 | Msa0932060:CDS | 30.0% |
| !! | ACAATTTTGGAAAACTTAGG+GGG | - | chr6_3:94984-95003 | Msa0932060:CDS | 30.0% |
| ! | CAAAGGCTTAATTACACTTT+TGG | + | chr6_3:95010-95029 | None:intergenic | 30.0% |
| GTTATGCATGAGTAAAACAA+AGG | + | chr6_3:95027-95046 | None:intergenic | 30.0% | |
| CTGATGATATGTCATCTAAT+CGG | - | chr6_3:95205-95224 | Msa0932060:intron | 30.0% | |
| TGATGATATGTCATCTAATC+GGG | - | chr6_3:95206-95225 | Msa0932060:intron | 30.0% | |
| TGTCAATGAAAAACAAGATG+TGG | - | chr6_3:95308-95327 | Msa0932060:CDS | 30.0% | |
| TGTGTATCTTTAGATTCATC+AGG | + | chr6_3:95336-95355 | None:intergenic | 30.0% | |
| !! | TAATACTGATTCTACTGCAA+TGG | - | chr6_3:95365-95384 | Msa0932060:intron | 30.0% |
| ! | TCAAAAAAGAAGTGTGATGA+AGG | + | chr6_3:95620-95639 | None:intergenic | 30.0% |
| CTTAGATGGTTTATAATTGG+GGG | - | chr6_3:96019-96038 | Msa0932060:intron | 30.0% | |
| !!! | ATGAATCATTAGGGCTTTTT+TGG | - | chr6_3:96116-96135 | Msa0932060:intron | 30.0% |
| TATCGTACACTAAAAATTCC+TGG | + | chr6_3:96149-96168 | None:intergenic | 30.0% | |
| TAGACAACAGTTAGAATAGA+AGG | + | chr6_3:96258-96277 | None:intergenic | 30.0% | |
| TCTTAAATTCATCGCACTGA+AGG | - | chr6_3:90981-91000 | Msa0932060:three_prime_UTR | 35.0% | |
| CTTAAATTCATCGCACTGAA+GGG | - | chr6_3:90982-91001 | Msa0932060:three_prime_UTR | 35.0% | |
| !!! | GTGGGGTTATTTTTAGGTTT+TGG | - | chr6_3:91057-91076 | Msa0932060:three_prime_UTR | 35.0% |
| ATCAAGCTGTTTATCCAAAC+AGG | + | chr6_3:91285-91304 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr6_3:91497-91516 | Msa0932060:intron | 35.0% | |
| !! | AGTAATAATGGGTTGTAGAC+TGG | - | chr6_3:91581-91600 | Msa0932060:intron | 35.0% |
| TAAATTATAATTGCTGGGCC+GGG | + | chr6_3:91607-91626 | None:intergenic | 35.0% | |
| GTAAATTATAATTGCTGGGC+CGG | + | chr6_3:91608-91627 | None:intergenic | 35.0% | |
| GGCCCAGCAATTATAATTTA+CGG | - | chr6_3:91607-91626 | Msa0932060:intron | 35.0% | |
| GAGCCGTAAATTATAATTGC+TGG | + | chr6_3:91613-91632 | None:intergenic | 35.0% | |
| ! | ATTTGAAACCCTAAACAAGC+TGG | - | chr6_3:91636-91655 | Msa0932060:intron | 35.0% |
| !! | TGTTCCATTTTAACCTCGTA+GGG | - | chr6_3:91748-91767 | Msa0932060:CDS | 35.0% |
| CGACAATGAGATTGTCAAAT+TGG | - | chr6_3:92135-92154 | Msa0932060:intron | 35.0% | |
| CTTACCAAATCTTAACCGAT+TGG | - | chr6_3:92162-92181 | Msa0932060:intron | 35.0% | |
| TAATGAGTAGTGTACCCAAT+CGG | + | chr6_3:92180-92199 | None:intergenic | 35.0% | |
| CACTACTCATTAACAACAAC+AGG | - | chr6_3:92188-92207 | Msa0932060:intron | 35.0% | |
| TGTGTAACTCTACCTTACTA+TGG | - | chr6_3:92301-92320 | Msa0932060:intron | 35.0% | |
| GCAATACAAACACCATAGTA+AGG | + | chr6_3:92316-92335 | None:intergenic | 35.0% | |
| CTTTCTTGAAGTCCAAAACT+CGG | + | chr6_3:92513-92532 | None:intergenic | 35.0% | |
| AACGTACCATTGTCTCTTAA+TGG | - | chr6_3:92640-92659 | Msa0932060:intron | 35.0% | |
| CCACGTAAAACAAAGACTAA+GGG | + | chr6_3:92834-92853 | None:intergenic | 35.0% | |
| TAGCTTAAAAGTTGTAGACG+AGG | - | chr6_3:93311-93330 | Msa0932060:intron | 35.0% | |
| ! | ATGCTGAAGTTATGGGTTAA+AGG | + | chr6_3:93358-93377 | None:intergenic | 35.0% |
| TCATCGTATATGTGCTGTAT+TGG | + | chr6_3:93385-93404 | None:intergenic | 35.0% | |
| CAGCACATATACGATGATAT+AGG | - | chr6_3:93388-93407 | Msa0932060:intron | 35.0% | |
| !! | TCACTAGTGTTGTTTAATGG+AGG | - | chr6_3:93433-93452 | Msa0932060:intron | 35.0% |
| TACAAATTGCTTATGGTGGT+TGG | + | chr6_3:93500-93519 | None:intergenic | 35.0% | |
| CGTTTACAAATTGCTTATGG+TGG | + | chr6_3:93504-93523 | None:intergenic | 35.0% | |
| CTCCGTTTACAAATTGCTTA+TGG | + | chr6_3:93507-93526 | None:intergenic | 35.0% | |
| CATAAGCAATTTGTAAACGG+AGG | - | chr6_3:93505-93524 | Msa0932060:intron | 35.0% | |
| ACTACCAATGTTATCAATGG+TGG | + | chr6_3:93564-93583 | None:intergenic | 35.0% | |
| GTGACTACCAATGTTATCAA+TGG | + | chr6_3:93567-93586 | None:intergenic | 35.0% | |
| ! | TAACATTGGTAGTCACCTTA+AGG | - | chr6_3:93571-93590 | Msa0932060:intron | 35.0% |
| GGTTTGACACAAATGAGATA+TGG | + | chr6_3:93648-93667 | None:intergenic | 35.0% | |
| GTTCCTTTCTGTAAATGCAA+TGG | - | chr6_3:93827-93846 | Msa0932060:intron | 35.0% | |
| CAACTATAAAACACATCGCA+AGG | - | chr6_3:93886-93905 | Msa0932060:intron | 35.0% | |
| TAATTATCTGCATTTGAGGG+TGG | - | chr6_3:93983-94002 | Msa0932060:CDS | 35.0% | |
| TATTGATCTGAGAAAGTCAG+TGG | - | chr6_3:94219-94238 | Msa0932060:intron | 35.0% | |
| ACTAAGGAATCACCTTATTC+TGG | - | chr6_3:94458-94477 | Msa0932060:intron | 35.0% | |
| GAAGAAACATGTAAAACCAC+AGG | + | chr6_3:94567-94586 | None:intergenic | 35.0% | |
| AAGAGTCTGTGAACTAACAA+TGG | + | chr6_3:94603-94622 | None:intergenic | 35.0% | |
| ! | ACAACTTTGGAAAACTTAGG+GGG | + | chr6_3:94733-94752 | None:intergenic | 35.0% |
| ! | CACAACTTTGGAAAACTTAG+GGG | + | chr6_3:94734-94753 | None:intergenic | 35.0% |
| !! | CTTTTTGACTCGAAATTAGG+GGG | + | chr6_3:94864-94883 | None:intergenic | 35.0% |
| TCGAGTCAAAAAGTAAACTC+AGG | - | chr6_3:94871-94890 | Msa0932060:intron | 35.0% | |
| CGAGTCAAAAAGTAAACTCA+GGG | - | chr6_3:94872-94891 | Msa0932060:intron | 35.0% | |
| GAGTCAAAAAGTAAACTCAG+GGG | - | chr6_3:94873-94892 | Msa0932060:intron | 35.0% | |
| AGTCAAAAAGTAAACTCAGG+GGG | - | chr6_3:94874-94893 | Msa0932060:intron | 35.0% | |
| TTGACCTCTTACTAGACTAA+TGG | - | chr6_3:95084-95103 | Msa0932060:intron | 35.0% | |
| TGACCTCTTACTAGACTAAT+GGG | - | chr6_3:95085-95104 | Msa0932060:intron | 35.0% | |
| TAATCGGGTTTGATGTTAAC+AGG | - | chr6_3:95221-95240 | Msa0932060:intron | 35.0% | |
| !!! | TTTTAAGATCTGCAGGAAGT+TGG | + | chr6_3:95260-95279 | None:intergenic | 35.0% |
| ! | NNNNGCTCAAGCTTTTCTTG+TGG | - | chr6_3:95514-95533 | Msa0932060:intron | 35.0% |
| ! | TGTGATGAAGGCACAATTAT+AGG | + | chr6_3:95608-95627 | None:intergenic | 35.0% |
| AAATAATGGTTGGGTGTGTT+GGG | + | chr6_3:95661-95680 | None:intergenic | 35.0% | |
| AAAATAATGGTTGGGTGTGT+TGG | + | chr6_3:95662-95681 | None:intergenic | 35.0% | |
| ! | TTGTGCGTACACTTTTATGT+CGG | - | chr6_3:95945-95964 | Msa0932060:intron | 35.0% |
| GGGTTCTTGAATCAAAGTAT+TGG | - | chr6_3:95966-95985 | Msa0932060:intron | 35.0% | |
| ! | GTACTTCTCTGTTTCTTAGA+TGG | - | chr6_3:96005-96024 | Msa0932060:intron | 35.0% |
| ACACTAAAAATTCCTGGCTA+GGG | + | chr6_3:96143-96162 | None:intergenic | 35.0% | |
| TACACTAAAAATTCCTGGCT+AGG | + | chr6_3:96144-96163 | None:intergenic | 35.0% | |
| CATATAAAGAGATGCAGACT+TGG | - | chr6_3:96231-96250 | Msa0932060:five_prime_UTR | 35.0% | |
| AAAGAAGAGAGGAGAAGAGA+GGG | + | chr6_3:90841-90860 | None:intergenic | 40.0% | |
| !!! | GCAATGGTTTTTTTGAGTGC+TGG | - | chr6_3:91180-91199 | Msa0932060:exon | 40.0% |
| ACGTAAAACCAGAGCACATA+GGG | + | chr6_3:91523-91542 | None:intergenic | 40.0% | |
| !! | CTGTTCCATTTTAACCTCGT+AGG | - | chr6_3:91747-91766 | Msa0932060:CDS | 40.0% |
| ATCTCCCTACGAGGTTAAAA+TGG | + | chr6_3:91755-91774 | None:intergenic | 40.0% | |
| !! | ATTTTAACCTCGTAGGGAGA+TGG | - | chr6_3:91754-91773 | Msa0932060:CDS | 40.0% |
| ! | AATGAGGACTTTTCCAGATC+AGG | + | chr6_3:91796-91815 | None:intergenic | 40.0% |
| CTGCAAGGAATCCATTACAA+AGG | + | chr6_3:92089-92108 | None:intergenic | 40.0% | |
| !! | CTTTGTAATGGATTCCTTGC+AGG | - | chr6_3:92087-92106 | Msa0932060:intron | 40.0% |
| GTACCCAATCGGTTAAGATT+TGG | + | chr6_3:92169-92188 | None:intergenic | 40.0% | |
| ACAACAGCTAGAAGCAAGAT+GGG | + | chr6_3:92270-92289 | None:intergenic | 40.0% | |
| TACAACAGCTAGAAGCAAGA+TGG | + | chr6_3:92271-92290 | None:intergenic | 40.0% | |
| CTAGTGTGTGTAAATTCGGT+AGG | + | chr6_3:92345-92364 | None:intergenic | 40.0% | |
| ! | CACTAGTTCTCACAAACAAC+AGG | - | chr6_3:92359-92378 | Msa0932060:intron | 40.0% |
| GTCTTGCCATTAAGAGACAA+TGG | + | chr6_3:92649-92668 | None:intergenic | 40.0% | |
| GCAGTAAAATATCCACAACC+TGG | + | chr6_3:92671-92690 | None:intergenic | 40.0% | |
| CTGCATATAATCGTAGACGA+TGG | - | chr6_3:92687-92706 | Msa0932060:intron | 40.0% | |
| AGTTATATGCACGCAAGATC+TGG | + | chr6_3:92786-92805 | None:intergenic | 40.0% | |
| GTGCATATAACTGTAGACGA+CGG | - | chr6_3:92794-92813 | Msa0932060:intron | 40.0% | |
| !!! | CCCTTAGTCTTTGTTTTACG+TGG | - | chr6_3:92831-92850 | Msa0932060:intron | 40.0% |
| GCCACGTAAAACAAAGACTA+AGG | + | chr6_3:92835-92854 | None:intergenic | 40.0% | |
| ! | TACAGGAAGTACAGATGAAG+AGG | + | chr6_3:93041-93060 | None:intergenic | 40.0% |
| TCTTCATCTGTACTTCCTGT+AGG | - | chr6_3:93040-93059 | Msa0932060:intron | 40.0% | |
| ! | GAAACATCTGGAGTTTCAAC+AGG | + | chr6_3:93134-93153 | None:intergenic | 40.0% |
| TCCAGATGTTTCAGAAGCTA+CGG | - | chr6_3:93142-93161 | Msa0932060:intron | 40.0% | |
| !! | ATAATTTGCTCTGGAGTAGG+AGG | + | chr6_3:93194-93213 | None:intergenic | 40.0% |
| !! | GCAATAATTTGCTCTGGAGT+AGG | + | chr6_3:93197-93216 | None:intergenic | 40.0% |
| TGGACACATGCTGAAGTTAT+GGG | + | chr6_3:93365-93384 | None:intergenic | 40.0% | |
| TTGGACACATGCTGAAGTTA+TGG | + | chr6_3:93366-93385 | None:intergenic | 40.0% | |
| ! | CCAATGTTATCAATGGTGGA+TGG | + | chr6_3:93560-93579 | None:intergenic | 40.0% |
| ! | CCATCCACCATTGATAACAT+TGG | - | chr6_3:93557-93576 | Msa0932060:intron | 40.0% |
| TTCGGACCCTGATATTTGAT+AGG | + | chr6_3:93669-93688 | None:intergenic | 40.0% | |
| AATATCAGGGTCCGAACAAA+AGG | - | chr6_3:93673-93692 | Msa0932060:intron | 40.0% | |
| ACACATCAAGACTAACTGGA+CGG | + | chr6_3:93809-93828 | None:intergenic | 40.0% | |
| AGGAACACATCAAGACTAAC+TGG | + | chr6_3:93813-93832 | None:intergenic | 40.0% | |
| GGTGGCTTATTTGCATTTGA+GGG | - | chr6_3:94001-94020 | Msa0932060:CDS | 40.0% | |
| GAATTAATCAAATGGGCCAG+TGG | + | chr6_3:94099-94118 | None:intergenic | 40.0% | |
| AAGCTATAGCTAACAGCAGT+AGG | - | chr6_3:94331-94350 | Msa0932060:intron | 40.0% | |
| AGCTATAGCTAACAGCAGTA+GGG | - | chr6_3:94332-94351 | Msa0932060:intron | 40.0% | |
| TATTGCTGCCATCTCTTAGA+GGG | - | chr6_3:94510-94529 | Msa0932060:intron | 40.0% | |
| TATTTGTGTGAGTTACCCTG+TGG | - | chr6_3:94548-94567 | Msa0932060:intron | 40.0% | |
| AGATGTCGCTAGACTTGAAA+AGG | - | chr6_3:94625-94644 | Msa0932060:CDS | 40.0% | |
| AAAAGTAAACTTAGGGGGCT+TGG | + | chr6_3:94786-94805 | None:intergenic | 40.0% | |
| TAAAGTAAACTTAGGGGGCT+TGG | - | chr6_3:94930-94949 | Msa0932060:CDS | 40.0% | |
| ! | TCTCCCATTAGTCTAGTAAG+AGG | + | chr6_3:95091-95110 | None:intergenic | 40.0% |
| !!! | GTCAAGCTTTTAAGATCTGC+AGG | + | chr6_3:95267-95286 | None:intergenic | 40.0% |
| TGATTCTACTGCAATGGAAC+AGG | - | chr6_3:95371-95390 | Msa0932060:intron | 40.0% | |
| TACATATCATGGGGGAATGA+TGG | + | chr6_3:95556-95575 | None:intergenic | 40.0% | |
| ATCCTACCTATTCTCATCCT+TGG | - | chr6_3:95725-95744 | Msa0932060:intron | 40.0% | |
| ! | TAATGGATCTCATTCCCTCA+AGG | + | chr6_3:95751-95770 | None:intergenic | 40.0% |
| GAGGGAATGAGATCCATTAT+AGG | - | chr6_3:95752-95771 | Msa0932060:intron | 40.0% | |
| ! | TGTGCGTACACTTTTATGTC+GGG | - | chr6_3:95946-95965 | Msa0932060:intron | 40.0% |
| CACTAAAAATTCCTGGCTAG+GGG | + | chr6_3:96142-96161 | None:intergenic | 40.0% | |
| GAAAGAAGAGAGGAGAAGAG+AGG | + | chr6_3:90842-90861 | None:intergenic | 45.0% | |
| ACGAATCGGTGAAAGAAGAG+AGG | + | chr6_3:90852-90871 | None:intergenic | 45.0% | |
| !! | TCTCTTCTTTCACCGATTCG+TGG | - | chr6_3:90851-90870 | Msa0932060:three_prime_UTR | 45.0% |
| !! | AGAAGTACTCACAGACACGA+CGG | + | chr6_3:90902-90921 | None:intergenic | 45.0% |
| AATTCATCGCACTGAAGGGT+TGG | - | chr6_3:90986-91005 | Msa0932060:three_prime_UTR | 45.0% | |
| TGCTTCATTATGGGCCTGTT+TGG | - | chr6_3:91268-91287 | Msa0932060:intron | 45.0% | |
| GACGTAAAACCAGAGCACAT+AGG | + | chr6_3:91524-91543 | None:intergenic | 45.0% | |
| ! | ACAAGCAGCCAGCTTGTTTA+GGG | + | chr6_3:91647-91666 | None:intergenic | 45.0% |
| ! | TACAAGCAGCCAGCTTGTTT+AGG | + | chr6_3:91648-91667 | None:intergenic | 45.0% |
| TGAGCACGAAGATTAAGCTC+AGG | + | chr6_3:91695-91714 | None:intergenic | 45.0% | |
| ! | TACCATTAAAGAGCGCGAGT+TGG | - | chr6_3:91823-91842 | Msa0932060:CDS | 45.0% |
| ATCCAACTCGCGCTCTTTAA+TGG | + | chr6_3:91828-91847 | None:intergenic | 45.0% | |
| ! | CGAAAATTTAGGTGCCACAG+AGG | - | chr6_3:91874-91893 | Msa0932060:intron | 45.0% |
| TGTGTCAAATTGGTCCTGCA+AGG | + | chr6_3:92104-92123 | None:intergenic | 45.0% | |
| CAACAGCTAGAAGCAAGATG+GGG | + | chr6_3:92269-92288 | None:intergenic | 45.0% | |
| AGGTAGAGTTACACAGCTTG+TGG | + | chr6_3:92296-92315 | None:intergenic | 45.0% | |
| !! | AGCTTTGGAAGGGATGTCAA+AGG | + | chr6_3:92409-92428 | None:intergenic | 45.0% |
| !! | AAGGAACTGCAGCTTTGGAA+GGG | + | chr6_3:92419-92438 | None:intergenic | 45.0% |
| !! | TAAGGAACTGCAGCTTTGGA+AGG | + | chr6_3:92420-92439 | None:intergenic | 45.0% |
| AGACTAAGGAACTGCAGCTT+TGG | + | chr6_3:92424-92443 | None:intergenic | 45.0% | |
| CTTGAAGTCCAAAACTCGGA+GGG | + | chr6_3:92509-92528 | None:intergenic | 45.0% | |
| TCTTGAAGTCCAAAACTCGG+AGG | + | chr6_3:92510-92529 | None:intergenic | 45.0% | |
| TGTCTCTTAATGGCAAGACC+AGG | - | chr6_3:92650-92669 | Msa0932060:intron | 45.0% | |
| TTAATGGCAAGACCAGGTTG+TGG | - | chr6_3:92656-92675 | Msa0932060:intron | 45.0% | |
| AAACAAGGGCTAAGACAGAC+TGG | + | chr6_3:92725-92744 | None:intergenic | 45.0% | |
| TCGCTTCTAAACGTTCCTAC+AGG | + | chr6_3:93058-93077 | None:intergenic | 45.0% | |
| !! | TCCGTAGCTTCTGAAACATC+TGG | + | chr6_3:93146-93165 | None:intergenic | 45.0% |
| AGATGTTTCAGAAGCTACGG+AGG | - | chr6_3:93145-93164 | Msa0932060:intron | 45.0% | |
| GGAGTAGGAGGAATCACTTT+GGG | + | chr6_3:93182-93201 | None:intergenic | 45.0% | |
| TGGAGTAGGAGGAATCACTT+TGG | + | chr6_3:93183-93202 | None:intergenic | 45.0% | |
| !! | GTGTTGTTTAATGGAGGCCA+TGG | - | chr6_3:93439-93458 | Msa0932060:intron | 45.0% |
| GAGAAAATTCCGCCATGCTA+AGG | + | chr6_3:93478-93497 | None:intergenic | 45.0% | |
| ! | TTCAGGCCAAGCCTTTTGTT+CGG | + | chr6_3:93687-93706 | None:intergenic | 45.0% |
| GGGTGGCTTATTTGCATTTG+AGG | - | chr6_3:94000-94019 | Msa0932060:CDS | 45.0% | |
| GGCTTATTTGCATTTGAGGG+TGG | - | chr6_3:94004-94023 | Msa0932060:CDS | 45.0% | |
| CTATTGCTGCCATCTCTTAG+AGG | - | chr6_3:94509-94528 | Msa0932060:intron | 45.0% | |
| ATTGCTGCCATCTCTTAGAG+GGG | - | chr6_3:94511-94530 | Msa0932060:intron | 45.0% | |
| TACATGTTTCTTCTGCGTGC+AGG | - | chr6_3:94574-94593 | Msa0932060:intron | 45.0% | |
| GAGGGCCAAAATCACAACTT+TGG | + | chr6_3:94746-94765 | None:intergenic | 45.0% | |
| !! | GTTGCAATTTTAGCCCCTCA+TGG | - | chr6_3:94807-94826 | Msa0932060:intron | 45.0% |
| GCCTGGAAAGTAAACTTAGG+GGG | + | chr6_3:94842-94861 | None:intergenic | 45.0% | |
| GGCCTGGAAAGTAAACTTAG+GGG | + | chr6_3:94843-94862 | None:intergenic | 45.0% | |
| GGGCCTGGAAAGTAAACTTA+GGG | + | chr6_3:94844-94863 | None:intergenic | 45.0% | |
| !! | GTTGCAATTTTAGTCCCTCG+TGG | + | chr6_3:94909-94928 | None:intergenic | 45.0% |
| ! | GGGGGCCAAAATCACAATTT+TGG | - | chr6_3:94971-94990 | Msa0932060:CDS | 45.0% |
| !! | TGTTAACAGGCACTGAAGTC+TGG | - | chr6_3:95234-95253 | Msa0932060:intron | 45.0% |
| TCAAGGCCAAGGATGAGAAT+AGG | + | chr6_3:95734-95753 | None:intergenic | 45.0% | |
| !! | TATTCTCATCCTTGGCCTTG+AGG | - | chr6_3:95733-95752 | Msa0932060:intron | 45.0% |
| !! | ATTCTCATCCTTGGCCTTGA+GGG | - | chr6_3:95734-95753 | Msa0932060:intron | 45.0% |
| ! | CTTTTTGCAGGACTAGAGTG+AGG | - | chr6_3:95918-95937 | Msa0932060:intron | 45.0% |
| !!! | AACTATTTTTTTTTTTTTTA+AGG | - | chr6_3:91927-91946 | Msa0932060:intron | 5.0% |
| !! | TTCACCGATTCGTGGTGTTC+CGG | - | chr6_3:90859-90878 | Msa0932060:three_prime_UTR | 50.0% |
| CACATAGGGCCTGTTTGGAT+TGG | + | chr6_3:91509-91528 | None:intergenic | 50.0% | |
| !! | TAATGGGTTGTAGACTGGCC+CGG | - | chr6_3:91586-91605 | Msa0932060:intron | 50.0% |
| ! | GCTGAAATCCCTCCGAGTTT+TGG | - | chr6_3:92498-92517 | Msa0932060:intron | 50.0% |
| !! | AAGGCAGAATGGAAGCACCA+TGG | + | chr6_3:93459-93478 | None:intergenic | 50.0% |
| GCTTCCATTCTGCCTTAGCA+TGG | - | chr6_3:93463-93482 | Msa0932060:intron | 50.0% | |
| TCCATTCTGCCTTAGCATGG+CGG | - | chr6_3:93466-93485 | Msa0932060:intron | 50.0% | |
| CACCTTAAGGTGCAACAGCA+AGG | - | chr6_3:93584-93603 | Msa0932060:intron | 50.0% | |
| !! | CTCCTTGCTGTTGCACCTTA+AGG | + | chr6_3:93589-93608 | None:intergenic | 50.0% |
| TTGCTGCCATCTCTTAGAGG+GGG | - | chr6_3:94512-94531 | Msa0932060:intron | 50.0% | |
| ! | CATGTACCCCCTCTAAGAGA+TGG | + | chr6_3:94521-94540 | None:intergenic | 50.0% |
| GGGGCTAAAATTGCCATGAG+GGG | + | chr6_3:94823-94842 | None:intergenic | 50.0% | |
| GGGGGCTAAAATTGCCATGA+GGG | + | chr6_3:94824-94843 | None:intergenic | 50.0% | |
| AGGGGGCTAAAATTGCCATG+AGG | + | chr6_3:94825-94844 | None:intergenic | 50.0% | |
| GCCCCCTAAGTTTACTTTCC+AGG | - | chr6_3:94838-94857 | Msa0932060:intron | 50.0% | |
| GGGGCCTGGAAAGTAAACTT+AGG | + | chr6_3:94845-94864 | None:intergenic | 50.0% | |
| TAATGGTTGGGTGTGTTGGG+CGG | + | chr6_3:95658-95677 | None:intergenic | 50.0% | |
| GGCCAAGGATGAGAATAGGT+AGG | + | chr6_3:95730-95749 | None:intergenic | 50.0% | |
| ATCTCATTCCCTCAAGGCCA+AGG | + | chr6_3:95745-95764 | None:intergenic | 50.0% | |
| CAGCAGCTATTCTCCAAGAG+GGG | + | chr6_3:96053-96072 | None:intergenic | 50.0% | |
| GCAGCAGCTATTCTCCAAGA+GGG | + | chr6_3:96054-96073 | None:intergenic | 50.0% | |
| AGCAGCAGCTATTCTCCAAG+AGG | + | chr6_3:96055-96074 | None:intergenic | 50.0% | |
| GTGACCGGAACACCACGAAT+CGG | + | chr6_3:90866-90885 | None:intergenic | 55.0% | |
| GGAGGAACGGAAAGAGTGAC+CGG | + | chr6_3:90881-90900 | None:intergenic | 55.0% | |
| TCACAGACACGACGGAGGAA+CGG | + | chr6_3:90894-90913 | None:intergenic | 55.0% | |
| AGTACTCACAGACACGACGG+AGG | + | chr6_3:90899-90918 | None:intergenic | 55.0% | |
| CAGAGCACATAGGGCCTGTT+TGG | + | chr6_3:91514-91533 | None:intergenic | 55.0% | |
| CAAACAGGCCCTATGTGCTC+TGG | - | chr6_3:91512-91531 | Msa0932060:intron | 55.0% | |
| AGTCTCACCATCTCCCTACG+AGG | + | chr6_3:91764-91783 | None:intergenic | 55.0% | |
| GACTCACTGCTGACCTGATC+TGG | - | chr6_3:91780-91799 | Msa0932060:CDS | 55.0% | |
| CTCGGAGGGATTTCAGCTTG+TGG | + | chr6_3:92495-92514 | None:intergenic | 55.0% | |
| ! | TCTGGAGTTTCAACAGGCGC+TGG | + | chr6_3:93128-93147 | None:intergenic | 55.0% |
| TCCGCCATGCTAAGGCAGAA+TGG | + | chr6_3:93470-93489 | None:intergenic | 55.0% | |
| TTGTAAACGGAGGCCTGCCA+TGG | - | chr6_3:93515-93534 | Msa0932060:intron | 55.0% | |
| AACATGCCATTGCACCGCCA+TGG | + | chr6_3:93535-93554 | None:intergenic | 55.0% | |
| CAGGGTCCGAACAAAAGGCT+TGG | - | chr6_3:93678-93697 | Msa0932060:intron | 55.0% | |
| GGGTATGCTTTCTGCTCCAC+TGG | - | chr6_3:94080-94099 | Msa0932060:intron | 55.0% | |
| CTAACAGCAGTAGGGCGTAC+CGG | - | chr6_3:94340-94359 | Msa0932060:intron | 55.0% | |
| TGACTCGAAATTAGGGGGCC+TGG | + | chr6_3:94859-94878 | None:intergenic | 55.0% | |
| AGGGGGCTAAAATTGCCACG+AGG | - | chr6_3:94891-94910 | Msa0932060:intron | 55.0% | |
| GGGGGCTAAAATTGCCACGA+GGG | - | chr6_3:94892-94911 | Msa0932060:CDS | 55.0% | |
| GGGGGTTTCAATTCCCCTCT+TGG | - | chr6_3:96037-96056 | Msa0932060:intron | 55.0% | |
| ! | GAGCGCGAGTTGGATCTGAG+AGG | - | chr6_3:91833-91852 | Msa0932060:CDS | 60.0% |
| TAAACGGAGGCCTGCCATGG+CGG | - | chr6_3:93518-93537 | Msa0932060:intron | 60.0% | |
| !!! | GGCTTTTTTGGCCCCTAGCC+AGG | - | chr6_3:96128-96147 | Msa0932060:intron | 60.0% |
| TGCCATTGCACCGCCATGGC+AGG | + | chr6_3:93531-93550 | None:intergenic | 65.0% | |
| GGCCTGCCATGGCGGTGCAA+TGG | - | chr6_3:93526-93545 | Msa0932060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 90781 | 96349 | 90781 | ID=Msa0932060;Name=Msa0932060 |
| chr6_3 | mRNA | 90781 | 96349 | 90781 | ID=Msa0932060-mRNA-1;Parent=Msa0932060;Name=Msa0932060-mRNA-1;_AED=0.09;_eAED=0.09;_QI=133|0.85|0.87|1|0.71|0.62|8|416|261 |
| chr6_3 | exon | 90781 | 91202 | 90781 | ID=Msa0932060-mRNA-1:exon:83;Parent=Msa0932060-mRNA-1 |
| chr6_3 | exon | 91738 | 91887 | 91738 | ID=Msa0932060-mRNA-1:exon:82;Parent=Msa0932060-mRNA-1 |
| chr6_3 | exon | 92526 | 92534 | 92526 | ID=Msa0932060-mRNA-1:exon:81;Parent=Msa0932060-mRNA-1 |
| chr6_3 | exon | 93907 | 94068 | 93907 | ID=Msa0932060-mRNA-1:exon:80;Parent=Msa0932060-mRNA-1 |
| chr6_3 | exon | 94587 | 94792 | 94587 | ID=Msa0932060-mRNA-1:exon:79;Parent=Msa0932060-mRNA-1 |
| chr6_3 | exon | 94892 | 95021 | 94892 | ID=Msa0932060-mRNA-1:exon:78;Parent=Msa0932060-mRNA-1 |
| chr6_3 | exon | 95235 | 95361 | 95235 | ID=Msa0932060-mRNA-1:exon:77;Parent=Msa0932060-mRNA-1 |
| chr6_3 | exon | 96221 | 96349 | 96221 | ID=Msa0932060-mRNA-1:exon:76;Parent=Msa0932060-mRNA-1 |
| chr6_3 | five_prime_UTR | 96221 | 96349 | 96221 | ID=Msa0932060-mRNA-1:five_prime_utr;Parent=Msa0932060-mRNA-1 |
| chr6_3 | five_prime_UTR | 95358 | 95361 | 95358 | ID=Msa0932060-mRNA-1:five_prime_utr;Parent=Msa0932060-mRNA-1 |
| chr6_3 | CDS | 95235 | 95357 | 95235 | ID=Msa0932060-mRNA-1:cds;Parent=Msa0932060-mRNA-1 |
| chr6_3 | CDS | 94892 | 95021 | 94892 | ID=Msa0932060-mRNA-1:cds;Parent=Msa0932060-mRNA-1 |
| chr6_3 | CDS | 94587 | 94792 | 94587 | ID=Msa0932060-mRNA-1:cds;Parent=Msa0932060-mRNA-1 |
| chr6_3 | CDS | 93907 | 94068 | 93907 | ID=Msa0932060-mRNA-1:cds;Parent=Msa0932060-mRNA-1 |
| chr6_3 | CDS | 92526 | 92534 | 92526 | ID=Msa0932060-mRNA-1:cds;Parent=Msa0932060-mRNA-1 |
| chr6_3 | CDS | 91738 | 91887 | 91738 | ID=Msa0932060-mRNA-1:cds;Parent=Msa0932060-mRNA-1 |
| chr6_3 | CDS | 91197 | 91202 | 91197 | ID=Msa0932060-mRNA-1:cds;Parent=Msa0932060-mRNA-1 |
| chr6_3 | three_prime_UTR | 90781 | 91196 | 90781 | ID=Msa0932060-mRNA-1:three_prime_utr;Parent=Msa0932060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
