AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356510 MtrunA17_Chr6g0449031 92.727 275 3 1 1 258 1 275 0.0 498
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356510 AT1G09760.1 73.617 235 44 2 1 218 1 234 2.66e-116 333

Find 75 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTAGATGGTTTATAAT+TGG 0.204151 tig0015629:-20862 Msa1356510:three_prime_UTR
AGAGCAAATTATTGCTATTA+AGG 0.211984 tig0015629:-23576 Msa1356510:intron
ATCCAACTCGCGCTCTTTAA+TGG 0.228091 tig0015629:+24953 None:intergenic
CGACAATGAGATTGTCAAAT+TGG 0.231901 tig0015629:-24643 Msa1356510:CDS
TTCTTAGATGGTTTATAATT+GGG 0.232367 tig0015629:-20861 Msa1356510:three_prime_UTR
ATAGGACATAGTCAATTATT+TGG 0.246263 tig0015629:-20686 Msa1356510:three_prime_UTR
CAAATCATACCTCCAATATT+AGG 0.247606 tig0015629:+24552 None:intergenic
GCTGAAATCCCTCCGAGTTT+TGG 0.276825 tig0015629:-24280 Msa1356510:CDS
ACTAGAATTAATCCTAATAT+TGG 0.297232 tig0015629:-24564 Msa1356510:CDS
ATATCTGTAATCGAAAATTT+AGG 0.313621 tig0015629:-24915 Msa1356510:CDS
GTACTTCTCTGTTTCTTAGA+TGG 0.315719 tig0015629:-20873 Msa1356510:three_prime_UTR
TTCACCGATTCGTGGTGTTC+CGG 0.324648 tig0015629:-25963 Msa1356510:five_prime_UTR
ACAACTTGAATGAATCATTA+GGG 0.327978 tig0015629:-20771 Msa1356510:three_prime_UTR
TACAACTTGAATGAATCATT+AGG 0.348000 tig0015629:-20772 Msa1356510:three_prime_UTR
TGTGTATCTTTAGATTCATC+AGG 0.370931 tig0015629:+21445 None:intergenic
GAAACATTCTTCAAACTAAT+AGG 0.378950 tig0015629:-20704 Msa1356510:three_prime_UTR
TCTTAGATGGTTTATAATTG+GGG 0.382297 tig0015629:-20860 Msa1356510:three_prime_UTR
CACTACTCATTAACAACAAC+AGG 0.386369 tig0015629:-24590 Msa1356510:CDS
GACTCACTGCTGACCTGATC+TGG 0.386465 tig0015629:-24998 Msa1356510:CDS
GTACCCAATCGGTTAAGATT+TGG 0.397742 tig0015629:+24612 None:intergenic
AGACTAAGGAACTGCAGCTT+TGG 0.400575 tig0015629:+24357 None:intergenic
TAGACAACAGTTAGAATAGA+AGG 0.407383 tig0015629:+20623 None:intergenic
CAATTTGACAATCTCATTGT+CGG 0.414263 tig0015629:+24644 None:intergenic
ATAAATCTACTGTGTCAAAT+TGG 0.424527 tig0015629:+24667 None:intergenic
GAAACATCTGGAGTTTCAAC+AGG 0.431038 tig0015629:+23647 None:intergenic
TTAATAGCAATAATTTGCTC+TGG 0.437146 tig0015629:+23578 None:intergenic
TCTCTTCTTTCACCGATTCG+TGG 0.441773 tig0015629:-25971 Msa1356510:five_prime_UTR
TCCGTAGCTTCTGAAACATC+TGG 0.448794 tig0015629:+23635 None:intergenic
AAAGAAGAGAGGAGAAGAGA+GGG 0.452830 tig0015629:+25984 None:intergenic
TTACCAAATCTTAACCGATT+GGG 0.454175 tig0015629:-24615 Msa1356510:CDS
TGATTCTACTGCAATGGAAC+AGG 0.456679 tig0015629:-21407 Msa1356510:intron
TGTTAACAGGCACTGAAGTC+TGG 0.458610 tig0015629:-21544 Msa1356510:intron
AGAACTAGTGTGTGTAAATT+CGG 0.472213 tig0015629:+24432 None:intergenic
CTTACCAAATCTTAACCGAT+TGG 0.476759 tig0015629:-24616 Msa1356510:CDS
CACTAGTTCTCACAAACAAC+AGG 0.490673 tig0015629:-24419 Msa1356510:CDS
GGAGTAGGAGGAATCACTTT+GGG 0.492669 tig0015629:+23599 None:intergenic
TTAATGGTATTGAAGAAATG+AGG 0.495834 tig0015629:+24969 None:intergenic
CTTTCTTGAAGTCCAAAACT+CGG 0.500459 tig0015629:+24268 None:intergenic
CATATAAAGAGATGCAGACT+TGG 0.506354 tig0015629:-20647 Msa1356510:three_prime_UTR
GAAAGAAGAGAGGAGAAGAG+AGG 0.520416 tig0015629:+25983 None:intergenic
GCAATAATTTGCTCTGGAGT+AGG 0.520654 tig0015629:+23584 None:intergenic
AGAATTAATCCTAATATTGG+AGG 0.520985 tig0015629:-24561 Msa1356510:intron
GGGTTCTTGAATCAAAGTAT+TGG 0.521722 tig0015629:-20912 Msa1356510:three_prime_UTR
TAAGGAACTGCAGCTTTGGA+AGG 0.529538 tig0015629:+24361 None:intergenic
TCCAGATGTTTCAGAAGCTA+CGG 0.537922 tig0015629:-23636 Msa1356510:CDS
CTTAGATGGTTTATAATTGG+GGG 0.539990 tig0015629:-20859 Msa1356510:three_prime_UTR
TCACAGACACGACGGAGGAA+CGG 0.544393 tig0015629:+25931 None:intergenic
CTTGAAGTCCAAAACTCGGA+GGG 0.545316 tig0015629:+24272 None:intergenic
TAATGAGTAGTGTACCCAAT+CGG 0.554266 tig0015629:+24601 None:intergenic
TGGAGTAGGAGGAATCACTT+TGG 0.558536 tig0015629:+23598 None:intergenic
GTGACCGGAACACCACGAAT+CGG 0.559955 tig0015629:+25959 None:intergenic
GGAGGAACGGAAAGAGTGAC+CGG 0.560444 tig0015629:+25944 None:intergenic
ATAATTTGCTCTGGAGTAGG+AGG 0.562316 tig0015629:+23587 None:intergenic
CTTCAAGAAAGTGAAAGATA+AGG 0.562596 tig0015629:-24256 Msa1356510:intron
TAATACTGATTCTACTGCAA+TGG 0.563664 tig0015629:-21413 Msa1356510:CDS
TATTGTTGTCAAGAAGACTA+AGG 0.567496 tig0015629:+24343 None:intergenic
TACCATTAAAGAGCGCGAGT+TGG 0.572232 tig0015629:-24955 Msa1356510:CDS
CTCGGAGGGATTTCAGCTTG+TGG 0.583753 tig0015629:+24286 None:intergenic
TCTGGAGTTTCAACAGGCGC+TGG 0.587258 tig0015629:+23653 None:intergenic
ATAGACGTAATAGTATTAAG+TGG 0.589985 tig0015629:-20573 Msa1356510:three_prime_UTR
CTAGTGTGTGTAAATTCGGT+AGG 0.599258 tig0015629:+24436 None:intergenic
GCAGCAGCTATTCTCCAAGA+GGG 0.617176 tig0015629:+20827 None:intergenic
AAGGAACTGCAGCTTTGGAA+GGG 0.618926 tig0015629:+24362 None:intergenic
ATCTCTTTATATGAAGAACA+TGG 0.625651 tig0015629:+20657 None:intergenic
AGCTTTGGAAGGGATGTCAA+AGG 0.641417 tig0015629:+24372 None:intergenic
CGAAAATTTAGGTGCCACAG+AGG 0.647646 tig0015629:-24904 Msa1356510:intron
TCTTGAAGTCCAAAACTCGG+AGG 0.658139 tig0015629:+24271 None:intergenic
ACGAATCGGTGAAAGAAGAG+AGG 0.662143 tig0015629:+25973 None:intergenic
AGCAGCAGCTATTCTCCAAG+AGG 0.662757 tig0015629:+20826 None:intergenic
CAGCAGCTATTCTCCAAGAG+GGG 0.677943 tig0015629:+20828 None:intergenic
AGATGTTTCAGAAGCTACGG+AGG 0.681835 tig0015629:-23633 Msa1356510:CDS
GATAATATTACATACCTCTG+TGG 0.697109 tig0015629:+24890 None:intergenic
AGAAGTACTCACAGACACGA+CGG 0.697429 tig0015629:+25923 None:intergenic
GAGCGCGAGTTGGATCTGAG+AGG 0.748692 tig0015629:-24945 Msa1356510:CDS
AGTACTCACAGACACGACGG+AGG 0.750436 tig0015629:+25926 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATAGTTACA+AGG + tig0015629:21739-21758 None:intergenic 10.0%
!!! TTTTCTTAAAATTATATTTG+TGG - tig0015629:22725-22744 Msa1356510:intron 10.0%
!! AGAATTAAAAATAGAATAAT+AGG + tig0015629:23528-23547 None:intergenic 10.0%
!! AAAGAATAGTAATAAAATAA+TGG + tig0015629:25390-25409 None:intergenic 10.0%
!!! AGACTCTTTTTTTTTTTTTT+TGG + tig0015629:20570-20589 None:intergenic 15.0%
!!! TCTATGCTTTTTTTTTTTTT+TGG - tig0015629:20759-20778 Msa1356510:three_prime_UTR 15.0%
!! AGAAAATTATAGATTTGTAT+AGG - tig0015629:21046-21065 Msa1356510:intron 15.0%
!! AAAATAATATGAATTCCATT+TGG - tig0015629:21368-21387 Msa1356510:intron 15.0%
!! AAATAATATGAATTCCATTT+GGG - tig0015629:21369-21388 Msa1356510:intron 15.0%
!! TTACAAAAAAAGTGAATTAT+AGG - tig0015629:22273-22292 Msa1356510:intron 15.0%
!! TTACAATGCAAAAAAAAAAA+CGG - tig0015629:22784-22803 Msa1356510:intron 15.0%
!! TAAATTCATTATCAGTTTAA+TGG + tig0015629:23672-23691 None:intergenic 15.0%
!! CAATAAAGAATTAATCAAAT+GGG + tig0015629:23921-23940 None:intergenic 15.0%
!!! TTTGATATTTTCTTTAACTA+AGG - tig0015629:24257-24276 Msa1356510:CDS 15.0%
!!! TTAAGTATTGTTTTTGTTTT+AGG - tig0015629:24505-24524 Msa1356510:intron 15.0%
!! ATATATAAGAAATCTATACT+AGG + tig0015629:24989-25008 None:intergenic 15.0%
!! ATAGTAATAAAATAATGGTT+GGG + tig0015629:25385-25404 None:intergenic 15.0%
!! AATAGTAATAAAATAATGGT+TGG + tig0015629:25386-25405 None:intergenic 15.0%
!! AAAAAAAAGAGTCTCTTATT+AGG - tig0015629:20576-20595 Msa1356510:three_prime_UTR 20.0%
!!! AGAATTTTCTATGCTTTATA+TGG - tig0015629:20786-20805 Msa1356510:three_prime_UTR 20.0%
!!! AAAGTTGTTTAATTTCATGT+GGG - tig0015629:20872-20891 Msa1356510:three_prime_UTR 20.0%
!! TGATTATTTATGCTTCATTA+TGG - tig0015629:21073-21092 Msa1356510:intron 20.0%
!! GATTATTTATGCTTCATTAT+GGG - tig0015629:21074-21093 Msa1356510:intron 20.0%
!!! TTCATATTATTTTCATGTCA+AGG + tig0015629:21361-21380 None:intergenic 20.0%
!! ATATCTGTAATCGAAAATTT+AGG - tig0015629:21678-21697 Msa1356510:intron 20.0%
!!! TTCAGTTAAATAATTTTGAC+AGG - tig0015629:21829-21848 Msa1356510:intron 20.0%
!!! TCAGTTAAATAATTTTGACA+GGG - tig0015629:21830-21849 Msa1356510:intron 20.0%
!! ACTAGAATTAATCCTAATAT+TGG - tig0015629:22029-22048 Msa1356510:intron 20.0%
!! ACCAAAGAAAAGATAAATAT+GGG + tig0015629:22383-22402 None:intergenic 20.0%
!! AACCAAAGAAAAGATAAATA+TGG + tig0015629:22384-22403 None:intergenic 20.0%
!! CTTAAAATTATATTTGTGGA+TGG - tig0015629:22729-22748 Msa1356510:intron 20.0%
!! CAAACAAAAATGCATAAAAA+AGG + tig0015629:23106-23125 None:intergenic 20.0%
!! TTGTAAAATGAATTTAACTG+TGG - tig0015629:23565-23584 Msa1356510:intron 20.0%
!! TTTATAATTATCTGCATTTG+AGG - tig0015629:23794-23813 Msa1356510:intron 20.0%
!! TTATAATTATCTGCATTTGA+GGG - tig0015629:23795-23814 Msa1356510:intron 20.0%
!! ATAGCATAATTTCAACTTAT+AGG + tig0015629:23871-23890 None:intergenic 20.0%
!! CCAATAAAGAATTAATCAAA+TGG + tig0015629:23922-23941 None:intergenic 20.0%
!! CCATTTGATTAATTCTTTAT+TGG - tig0015629:23919-23938 Msa1356510:intron 20.0%
!! TTGATTAATTCTTTATTGGT+TGG - tig0015629:23923-23942 Msa1356510:intron 20.0%
!! ACATAGTTATATACTATGTA+TGG + tig0015629:24201-24220 None:intergenic 20.0%
!! AGTTAAAGAAAATATCAAAC+AGG + tig0015629:24256-24275 None:intergenic 20.0%
!! ATTAGATAATCATTCATTTC+TGG - tig0015629:24478-24497 Msa1356510:intron 20.0%
!! ACAAGTATAATTACATATCA+TGG + tig0015629:25282-25301 None:intergenic 20.0%
!! GCTTAATTAACTGTAATTAT+AGG + tig0015629:25416-25435 None:intergenic 20.0%
!! TTTCTTAGATGGTTTATAAT+TGG - tig0015629:25731-25750 Msa1356510:intron 20.0%
!! TTCTTAGATGGTTTATAATT+GGG - tig0015629:25732-25751 Msa1356510:intron 20.0%
!! CAAAGTTGTTTAATTTCATG+TGG - tig0015629:20871-20890 Msa1356510:three_prime_UTR 25.0%
!! AAGTTGTTTAATTTCATGTG+GGG - tig0015629:20873-20892 Msa1356510:three_prime_UTR 25.0%
!!! ATAAGTTTTGTGAGACTAAT+TGG + tig0015629:21274-21293 None:intergenic 25.0%
!!! ATTTGGGTTGTAGTAATAAT+GGG - tig0015629:21385-21404 Msa1356510:intron 25.0%
! TATTACTAGAATGATGACTT+TGG + tig0015629:21537-21556 None:intergenic 25.0%
!! TTAATGGTATTGAAGAAATG+AGG + tig0015629:21627-21646 None:intergenic 25.0%
! AATTCATGAACATATCAAGT+AGG + tig0015629:21875-21894 None:intergenic 25.0%
! ATAAATCTACTGTGTCAAAT+TGG + tig0015629:21929-21948 None:intergenic 25.0%
! AGAATTAATCCTAATATTGG+AGG - tig0015629:22032-22051 Msa1356510:intron 25.0%
!! ACCCATATTTATCTTTTCTT+TGG - tig0015629:22379-22398 Msa1356510:intron 25.0%
! TGCAAAAAAAAAAACGGAAA+TGG - tig0015629:22790-22809 Msa1356510:intron 25.0%
! AAAAAAAAAAACGGAAATGG+TGG - tig0015629:22793-22812 Msa1356510:intron 25.0%
!! GAAAAACTTGTTTGAATCAA+AGG - tig0015629:22891-22910 Msa1356510:intron 25.0%
!!! TTAATAGCAATAATTTGCTC+TGG + tig0015629:23018-23037 None:intergenic 25.0%
!! AGAGCAAATTATTGCTATTA+AGG - tig0015629:23017-23036 Msa1356510:intron 25.0%
! TTCATTCTAAATTGAACACA+AGG + tig0015629:23064-23083 None:intergenic 25.0%
! AATAGAATAATAGGTACTTC+AGG + tig0015629:23519-23538 None:intergenic 25.0%
!! AACTGATAATGAATTTAGTC+AGG - tig0015629:23675-23694 Msa1356510:CDS 25.0%
!! AACTGATAATGAATTTAGTC+AGG - tig0015629:23675-23694 Msa1356510:CDS 25.0%
! AGTTGAAATTATGCTATAAG+TGG - tig0015629:23874-23893 Msa1356510:intron 25.0%
! GTTGAAATTATGCTATAAGT+GGG - tig0015629:23875-23894 Msa1356510:intron 25.0%
! TATGTATGGCTTACTATAAT+AGG + tig0015629:24187-24206 None:intergenic 25.0%
!!! TTTTGCTATAATCCAGAATA+AGG + tig0015629:24288-24307 None:intergenic 25.0%
! TATTCTGGATTATAGCAAAA+TGG - tig0015629:24288-24307 Msa1356510:CDS 25.0%
!! TTTAGGCTTAATTACACTTT+TGG - tig0015629:24522-24541 Msa1356510:intron 25.0%
!!! GAAAGAGTTGTTTTTTTAGA+GGG + tig0015629:24579-24598 None:intergenic 25.0%
! TGCAACAAAAAGTAAACTTA+GGG + tig0015629:24608-24627 None:intergenic 25.0%
! TTGCAACAAAAAGTAAACTT+AGG + tig0015629:24609-24628 None:intergenic 25.0%
!!! TACTTTTTGACTCGAAATTA+GGG + tig0015629:24681-24700 None:intergenic 25.0%
!!! TTACTTTTTGACTCGAAATT+AGG + tig0015629:24682-24701 None:intergenic 25.0%
! TTGCAACATAAAGTAAACTT+AGG - tig0015629:24737-24756 Msa1356510:intron 25.0%
! TGCAACATAAAGTAAACTTA+GGG - tig0015629:24738-24757 Msa1356510:intron 25.0%
!!! TGGAAAGAGTTGTTTTTTTT+AGG - tig0015629:24765-24784 Msa1356510:intron 25.0%
!!! GGAAAGAGTTGTTTTTTTTA+GGG - tig0015629:24766-24785 Msa1356510:intron 25.0%
!!! GAAAGAGTTGTTTTTTTTAG+GGG - tig0015629:24767-24786 Msa1356510:intron 25.0%
!!! AAAGAGTTGTTTTTTTTAGG+GGG - tig0015629:24768-24787 Msa1356510:intron 25.0%
!! GTTTTCCAAAATTGTGATTT+TGG + tig0015629:24794-24813 None:intergenic 25.0%
!!! ATCACAATTTTGGAAAACTT+AGG - tig0015629:24796-24815 Msa1356510:intron 25.0%
!!! TCACAATTTTGGAAAACTTA+GGG - tig0015629:24797-24816 Msa1356510:intron 25.0%
!! TGACATATCATCAGTTATTT+TGG + tig0015629:25014-25033 None:intergenic 25.0%
! AGTATAATTACATATCATGG+AGG + tig0015629:25279-25298 None:intergenic 25.0%
! TATACTTGTTCAGAACTAAT+TGG - tig0015629:25293-25312 Msa1356510:intron 25.0%
! GATACATTATTACTAACATG+AGG + tig0015629:25596-25615 None:intergenic 25.0%
!! TTTCATTACATTCTTTTTGC+AGG - tig0015629:25621-25640 Msa1356510:intron 25.0%
! TCTTAGATGGTTTATAATTG+GGG - tig0015629:25733-25752 Msa1356510:intron 25.0%
! TACAACTTGAATGAATCATT+AGG - tig0015629:25821-25840 Msa1356510:intron 25.0%
! ACAACTTGAATGAATCATTA+GGG - tig0015629:25822-25841 Msa1356510:intron 25.0%
! GAAACATTCTTCAAACTAAT+AGG - tig0015629:25889-25908 Msa1356510:intron 25.0%
! ATAGGACATAGTCAATTATT+TGG - tig0015629:25907-25926 Msa1356510:intron 25.0%
! ATCTCTTTATATGAAGAACA+TGG + tig0015629:25939-25958 None:intergenic 25.0%
! ATAGACGTAATAGTATTAAG+TGG - tig0015629:26020-26039 Msa1356510:five_prime_UTR 25.0%
GGTGAAAATTAAGAAGTTGA+AGG + tig0015629:20705-20724 None:intergenic 30.0%
!!! TTTCATGTGGGGTTATTTTT+AGG - tig0015629:20884-20903 Msa1356510:three_prime_UTR 30.0%
! AAGTCTAAAGTAACTTGCAA+TGG - tig0015629:20979-20998 Msa1356510:intron 30.0%
ATTTGAGCTTATCTACTTAC+TGG + tig0015629:21298-21317 None:intergenic 30.0%
CATTATTACTACAACCCAAA+TGG + tig0015629:21386-21405 None:intergenic 30.0%
!! CATTTGGGTTGTAGTAATAA+TGG - tig0015629:21384-21403 Msa1356510:intron 30.0%
AGCCGTAAATTATAATTGCT+GGG + tig0015629:21427-21446 None:intergenic 30.0%
GGAAAATTACAAAGTAGAGA+AGG + tig0015629:21489-21508 None:intergenic 30.0%
GATAATATTACATACCTCTG+TGG + tig0015629:21706-21725 None:intergenic 30.0%
! GAATTTGAGTTCCTTTGTAA+TGG - tig0015629:21890-21909 Msa1356510:intron 30.0%
CAATTTGACAATCTCATTGT+CGG + tig0015629:21952-21971 None:intergenic 30.0%
TTACCAAATCTTAACCGATT+GGG - tig0015629:21978-21997 Msa1356510:intron 30.0%
CAAATCATACCTCCAATATT+AGG + tig0015629:22044-22063 None:intergenic 30.0%
AGAACTAGTGTGTGTAAATT+CGG + tig0015629:22164-22183 None:intergenic 30.0%
TATTGTTGTCAAGAAGACTA+AGG + tig0015629:22253-22272 None:intergenic 30.0%
CTTCAAGAAAGTGAAAGATA+AGG - tig0015629:22337-22356 Msa1356510:intron 30.0%
AGAAAGTGAAAGATAAGGTA+AGG - tig0015629:22342-22361 Msa1356510:intron 30.0%
GAAAAGATAAATATGGGTAG+TGG + tig0015629:22377-22396 None:intergenic 30.0%
ATCAAAGCTGAGTAAAACAA+GGG + tig0015629:22554-22573 None:intergenic 30.0%
TATCAAAGCTGAGTAAAACA+AGG + tig0015629:22555-22574 None:intergenic 30.0%
TGAAAATGCAAATCAGATCT+TGG - tig0015629:22689-22708 Msa1356510:intron 30.0%
GAAAATGCAAATCAGATCTT+GGG - tig0015629:22690-22709 Msa1356510:intron 30.0%
TAAATTGAACACAAGGTGTA+TGG + tig0015629:23057-23076 None:intergenic 30.0%
!! TAGTCACTAGTGTTGTTTAA+TGG - tig0015629:23245-23264 Msa1356510:intron 30.0%
CACCATAAGCAATTTGTAAA+CGG - tig0015629:23317-23336 Msa1356510:intron 30.0%
ACTATATCTTGTGATAGTAC+AGG - tig0015629:23429-23448 Msa1356510:intron 30.0%
TGTCAAACCTATCAAATATC+AGG - tig0015629:23474-23493 Msa1356510:intron 30.0%
GTCAAACCTATCAAATATCA+GGG - tig0015629:23475-23494 Msa1356510:intron 30.0%
TATCCATTGCATTTACAGAA+AGG + tig0015629:23648-23667 None:intergenic 30.0%
AACTATAAAACACATCGCAA+GGG - tig0015629:23702-23721 Msa1356510:CDS 30.0%
! AGCTTTCATATTGGTTAGAT+TGG + tig0015629:24131-24150 None:intergenic 30.0%
GTTAGCTATAGCTTTCATAT+TGG + tig0015629:24140-24159 None:intergenic 30.0%
TTACTATAATAGGAAGGTTC+CGG + tig0015629:24177-24196 None:intergenic 30.0%
TATGGCTTACTATAATAGGA+AGG + tig0015629:24183-24202 None:intergenic 30.0%
AAGAAACATGTAAAACCACA+GGG + tig0015629:24381-24400 None:intergenic 30.0%
! TCACAACTTTGGAAAACTTA+GGG + tig0015629:24550-24569 None:intergenic 30.0%
! ATCACAACTTTGGAAAACTT+AGG + tig0015629:24551-24570 None:intergenic 30.0%
! GTTTTCCAAAGTTGTGATTT+TGG - tig0015629:24553-24572 Msa1356510:intron 30.0%
!!! GGAAAGAGTTGTTTTTTTAG+AGG + tig0015629:24580-24599 None:intergenic 30.0%
CAACAAAAAGTAAACTTAGG+GGG + tig0015629:24606-24625 None:intergenic 30.0%
GCAACAAAAAGTAAACTTAG+GGG + tig0015629:24607-24626 None:intergenic 30.0%
!! ACTTTTTGACTCGAAATTAG+GGG + tig0015629:24680-24699 None:intergenic 30.0%
GCAACATAAAGTAAACTTAG+GGG - tig0015629:24739-24758 Msa1356510:intron 30.0%
CAACATAAAGTAAACTTAGG+GGG - tig0015629:24740-24759 Msa1356510:intron 30.0%
!! CACAATTTTGGAAAACTTAG+GGG - tig0015629:24798-24817 Msa1356510:intron 30.0%
!! ACAATTTTGGAAAACTTAGG+GGG - tig0015629:24799-24818 Msa1356510:intron 30.0%
! CAAAGGCTTAATTACACTTT+TGG + tig0015629:24825-24844 None:intergenic 30.0%
GTTATGCATGAGTAAAACAA+AGG + tig0015629:24842-24861 None:intergenic 30.0%
CTGATGATATGTCATCTAAT+CGG - tig0015629:25020-25039 Msa1356510:intron 30.0%
TGATGATATGTCATCTAATC+GGG - tig0015629:25021-25040 Msa1356510:intron 30.0%
TGTCAATGAAAAACAAGATG+TGG - tig0015629:25123-25142 Msa1356510:intron 30.0%
TGTGTATCTTTAGATTCATC+AGG + tig0015629:25151-25170 None:intergenic 30.0%
!! TAATACTGATTCTACTGCAA+TGG - tig0015629:25180-25199 Msa1356510:intron 30.0%
! TCAAAAAAGAAGTGTGATGA+AGG + tig0015629:25335-25354 None:intergenic 30.0%
CTCAGTTAGATAACCTATAA+TGG + tig0015629:25483-25502 None:intergenic 30.0%
CATTATAGGTTATCTAACTG+AGG - tig0015629:25481-25500 Msa1356510:intron 30.0%
CTTAGATGGTTTATAATTGG+GGG - tig0015629:25734-25753 Msa1356510:intron 30.0%
!!! ATGAATCATTAGGGCTTTTT+TGG - tig0015629:25831-25850 Msa1356510:intron 30.0%
TATCGTACACTAAAAATTCC+TGG + tig0015629:25864-25883 None:intergenic 30.0%
TAGACAACAGTTAGAATAGA+AGG + tig0015629:25973-25992 None:intergenic 30.0%
! CTTAATTTTCACCTCATTGC+TGG - tig0015629:20712-20731 Msa1356510:three_prime_UTR 35.0%
TCTTAAATTCATCGCACTGA+AGG - tig0015629:20814-20833 Msa1356510:three_prime_UTR 35.0%
CTTAAATTCATCGCACTGAA+GGG - tig0015629:20815-20834 Msa1356510:three_prime_UTR 35.0%
!!! GTGGGGTTATTTTTAGGTTT+TGG - tig0015629:20890-20909 Msa1356510:three_prime_UTR 35.0%
ATCAAGCTGTTTATCCAAAC+AGG + tig0015629:21100-21119 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - tig0015629:21312-21331 Msa1356510:intron 35.0%
!! AGTAATAATGGGTTGTAGAC+TGG - tig0015629:21396-21415 Msa1356510:intron 35.0%
TAAATTATAATTGCTGGGCC+GGG + tig0015629:21422-21441 None:intergenic 35.0%
GTAAATTATAATTGCTGGGC+CGG + tig0015629:21423-21442 None:intergenic 35.0%
GGCCCAGCAATTATAATTTA+CGG - tig0015629:21422-21441 Msa1356510:CDS 35.0%
GAGCCGTAAATTATAATTGC+TGG + tig0015629:21428-21447 None:intergenic 35.0%
! ATTTGAAACCCTAAACAAGC+TGG - tig0015629:21451-21470 Msa1356510:CDS 35.0%
!! TGTTCCATTTTAACCTCGTA+GGG - tig0015629:21563-21582 Msa1356510:intron 35.0%
CGACAATGAGATTGTCAAAT+TGG - tig0015629:21950-21969 Msa1356510:intron 35.0%
CTTACCAAATCTTAACCGAT+TGG - tig0015629:21977-21996 Msa1356510:intron 35.0%
TAATGAGTAGTGTACCCAAT+CGG + tig0015629:21995-22014 None:intergenic 35.0%
CACTACTCATTAACAACAAC+AGG - tig0015629:22003-22022 Msa1356510:intron 35.0%
TGTGTAACTCTACCTTACTA+TGG - tig0015629:22116-22135 Msa1356510:intron 35.0%
GCAATACAAACACCATAGTA+AGG + tig0015629:22131-22150 None:intergenic 35.0%
CTTTCTTGAAGTCCAAAACT+CGG + tig0015629:22328-22347 None:intergenic 35.0%
AACGTACCATTGTCTCTTAA+TGG - tig0015629:22455-22474 Msa1356510:intron 35.0%
CCACGTAAAACAAAGACTAA+GGG + tig0015629:22649-22668 None:intergenic 35.0%
TAGCTTAAAAGTTGTAGACG+AGG - tig0015629:23126-23145 Msa1356510:intron 35.0%
! ATGCTGAAGTTATGGGTTAA+AGG + tig0015629:23173-23192 None:intergenic 35.0%
TCATCGTATATGTGCTGTAT+TGG + tig0015629:23200-23219 None:intergenic 35.0%
CAGCACATATACGATGATAT+AGG - tig0015629:23203-23222 Msa1356510:intron 35.0%
!! TCACTAGTGTTGTTTAATGG+AGG - tig0015629:23248-23267 Msa1356510:intron 35.0%
TACAAATTGCTTATGGTGGT+TGG + tig0015629:23315-23334 None:intergenic 35.0%
CGTTTACAAATTGCTTATGG+TGG + tig0015629:23319-23338 None:intergenic 35.0%
CTCCGTTTACAAATTGCTTA+TGG + tig0015629:23322-23341 None:intergenic 35.0%
CATAAGCAATTTGTAAACGG+AGG - tig0015629:23320-23339 Msa1356510:intron 35.0%
ACTACCAATGTTATCAATGG+TGG + tig0015629:23379-23398 None:intergenic 35.0%
GTGACTACCAATGTTATCAA+TGG + tig0015629:23382-23401 None:intergenic 35.0%
! TAACATTGGTAGTCACCTTA+AGG - tig0015629:23386-23405 Msa1356510:intron 35.0%
GGTTTGACACAAATGAGATA+TGG + tig0015629:23463-23482 None:intergenic 35.0%
GTTCCTTTCTGTAAATGCAA+TGG - tig0015629:23642-23661 Msa1356510:CDS 35.0%
CAACTATAAAACACATCGCA+AGG - tig0015629:23701-23720 Msa1356510:CDS 35.0%
TAATTATCTGCATTTGAGGG+TGG - tig0015629:23798-23817 Msa1356510:intron 35.0%
TATTGATCTGAGAAAGTCAG+TGG - tig0015629:24034-24053 Msa1356510:intron 35.0%
ACTAAGGAATCACCTTATTC+TGG - tig0015629:24273-24292 Msa1356510:CDS 35.0%
GAAGAAACATGTAAAACCAC+AGG + tig0015629:24382-24401 None:intergenic 35.0%
AAGTGTCTGTGAACTAACAA+TGG + tig0015629:24418-24437 None:intergenic 35.0%
! ACAACTTTGGAAAACTTAGG+GGG + tig0015629:24548-24567 None:intergenic 35.0%
! CACAACTTTGGAAAACTTAG+GGG + tig0015629:24549-24568 None:intergenic 35.0%
!! CTTTTTGACTCGAAATTAGG+GGG + tig0015629:24679-24698 None:intergenic 35.0%
TCGAGTCAAAAAGTAAACTC+AGG - tig0015629:24686-24705 Msa1356510:intron 35.0%
CGAGTCAAAAAGTAAACTCA+GGG - tig0015629:24687-24706 Msa1356510:intron 35.0%
GAGTCAAAAAGTAAACTCAG+GGG - tig0015629:24688-24707 Msa1356510:intron 35.0%
AGTCAAAAAGTAAACTCAGG+GGG - tig0015629:24689-24708 Msa1356510:intron 35.0%
TTGACCTCTTACTAGACTAA+TGG - tig0015629:24899-24918 Msa1356510:intron 35.0%
TGACCTCTTACTAGACTAAT+GGG - tig0015629:24900-24919 Msa1356510:intron 35.0%
TAATCGGGTTTGATGTTAAC+AGG - tig0015629:25036-25055 Msa1356510:intron 35.0%
!!! TTTTAAGATCTGCAGGAAGT+TGG + tig0015629:25075-25094 None:intergenic 35.0%
TACATATCATGGAGGAATGA+TGG + tig0015629:25271-25290 None:intergenic 35.0%
! TGTGATGAAGGCACAATTAT+AGG + tig0015629:25323-25342 None:intergenic 35.0%
AAATAATGGTTGGGTGTGTT+GGG + tig0015629:25376-25395 None:intergenic 35.0%
AAAATAATGGTTGGGTGTGT+TGG + tig0015629:25377-25396 None:intergenic 35.0%
! TTGTGCGTACACTTTTATGT+CGG - tig0015629:25660-25679 Msa1356510:intron 35.0%
GGGTTCTTGAATCAAAGTAT+TGG - tig0015629:25681-25700 Msa1356510:intron 35.0%
! GTACTTCTCTGTTTCTTAGA+TGG - tig0015629:25720-25739 Msa1356510:intron 35.0%
ACACTAAAAATTCCTGGCTA+GGG + tig0015629:25858-25877 None:intergenic 35.0%
TACACTAAAAATTCCTGGCT+AGG + tig0015629:25859-25878 None:intergenic 35.0%
CATATAAAGAGATGCAGACT+TGG - tig0015629:25946-25965 Msa1356510:five_prime_UTR 35.0%
AAAGAAGAGAGGAGAAGAGA+GGG + tig0015629:20612-20631 None:intergenic 40.0%
!! TTTTCACCTCATTGCTGGTT+AGG - tig0015629:20717-20736 Msa1356510:three_prime_UTR 40.0%
! TTTCACCTCATTGCTGGTTA+GGG - tig0015629:20718-20737 Msa1356510:three_prime_UTR 40.0%
! TTTTTCCCTAACCAGCAATG+AGG + tig0015629:20726-20745 None:intergenic 40.0%
!!! GCAATGGTTTTTTTGAGTGC+TGG - tig0015629:20995-21014 Msa1356510:intron 40.0%
ACGTAAAACCAGAGCACATA+GGG + tig0015629:21338-21357 None:intergenic 40.0%
!! CTGTTCCATTTTAACCTCGT+AGG - tig0015629:21562-21581 Msa1356510:intron 40.0%
ATCTCCCTACGAGGTTAAAA+TGG + tig0015629:21570-21589 None:intergenic 40.0%
!! ATTTTAACCTCGTAGGGAGA+TGG - tig0015629:21569-21588 Msa1356510:intron 40.0%
! AATGAGGACTTTTCCAGATC+AGG + tig0015629:21611-21630 None:intergenic 40.0%
CTGCAAGGAATCCATTACAA+AGG + tig0015629:21904-21923 None:intergenic 40.0%
!! CTTTGTAATGGATTCCTTGC+AGG - tig0015629:21902-21921 Msa1356510:intron 40.0%
GTACCCAATCGGTTAAGATT+TGG + tig0015629:21984-22003 None:intergenic 40.0%
ACAACAGCTAGAAGCAAGAT+GGG + tig0015629:22085-22104 None:intergenic 40.0%
TACAACAGCTAGAAGCAAGA+TGG + tig0015629:22086-22105 None:intergenic 40.0%
CTAGTGTGTGTAAATTCGGT+AGG + tig0015629:22160-22179 None:intergenic 40.0%
! CACTAGTTCTCACAAACAAC+AGG - tig0015629:22174-22193 Msa1356510:intron 40.0%
GTCTTGCCATTAAGAGACAA+TGG + tig0015629:22464-22483 None:intergenic 40.0%
GCAGTAAAATATCCACAACC+TGG + tig0015629:22486-22505 None:intergenic 40.0%
CTGCATATAATCGTAGACGA+TGG - tig0015629:22502-22521 Msa1356510:intron 40.0%
AGTTATATGCACGCAAGATC+TGG + tig0015629:22601-22620 None:intergenic 40.0%
GTGCATATAACTGTAGACGA+CGG - tig0015629:22609-22628 Msa1356510:intron 40.0%
!!! CCCTTAGTCTTTGTTTTACG+TGG - tig0015629:22646-22665 Msa1356510:intron 40.0%
GCCACGTAAAACAAAGACTA+AGG + tig0015629:22650-22669 None:intergenic 40.0%
! TACAGGAAGTACAGATGAAG+AGG + tig0015629:22856-22875 None:intergenic 40.0%
TCTTCATCTGTACTTCCTGT+AGG - tig0015629:22855-22874 Msa1356510:intron 40.0%
! GAAACATCTGGAGTTTCAAC+AGG + tig0015629:22949-22968 None:intergenic 40.0%
TCCAGATGTTTCAGAAGCTA+CGG - tig0015629:22957-22976 Msa1356510:intron 40.0%
!! ATAATTTGCTCTGGAGTAGG+AGG + tig0015629:23009-23028 None:intergenic 40.0%
!! GCAATAATTTGCTCTGGAGT+AGG + tig0015629:23012-23031 None:intergenic 40.0%
TGGACACATGCTGAAGTTAT+GGG + tig0015629:23180-23199 None:intergenic 40.0%
TTGGACACATGCTGAAGTTA+TGG + tig0015629:23181-23200 None:intergenic 40.0%
! CCAATGTTATCAATGGTGGA+TGG + tig0015629:23375-23394 None:intergenic 40.0%
! CCATCCACCATTGATAACAT+TGG - tig0015629:23372-23391 Msa1356510:intron 40.0%
TTCGGACCCTGATATTTGAT+AGG + tig0015629:23484-23503 None:intergenic 40.0%
AATATCAGGGTCCGAACAAA+AGG - tig0015629:23488-23507 Msa1356510:intron 40.0%
ACACATCAAGACTAACTGGA+CGG + tig0015629:23624-23643 None:intergenic 40.0%
AGGAACACATCAAGACTAAC+TGG + tig0015629:23628-23647 None:intergenic 40.0%
GGTGGCTTATTTGCATTTGA+GGG - tig0015629:23816-23835 Msa1356510:intron 40.0%
GAATTAATCAAATGGGCCAG+TGG + tig0015629:23914-23933 None:intergenic 40.0%
AAGCTATAGCTAACAGCAGT+AGG - tig0015629:24146-24165 Msa1356510:intron 40.0%
AGCTATAGCTAACAGCAGTA+GGG - tig0015629:24147-24166 Msa1356510:intron 40.0%
TATTGCTGCCATCTCTTAGA+GGG - tig0015629:24325-24344 Msa1356510:CDS 40.0%
TATTTGTGTGAGTTACCCTG+TGG - tig0015629:24363-24382 Msa1356510:CDS 40.0%
AGATGTCGCTAGACTTGAAA+AGG - tig0015629:24440-24459 Msa1356510:CDS 40.0%
AAAAGTAAACTTAGGGGGCT+TGG + tig0015629:24601-24620 None:intergenic 40.0%
TAAAGTAAACTTAGGGGGCT+TGG - tig0015629:24745-24764 Msa1356510:intron 40.0%
! TCTCCCATTAGTCTAGTAAG+AGG + tig0015629:24906-24925 None:intergenic 40.0%
!!! GTCAAGCTTTTAAGATCTGC+AGG + tig0015629:25082-25101 None:intergenic 40.0%
TGATTCTACTGCAATGGAAC+AGG - tig0015629:25186-25205 Msa1356510:intron 40.0%
AGAAAAGCTTGAGCAACACA+AGG + tig0015629:25227-25246 None:intergenic 40.0%
! TGTTGCTCAAGCTTTTCTTG+TGG - tig0015629:25229-25248 Msa1356510:intron 40.0%
ATCCTACCTATTCTCATCCT+TGG - tig0015629:25440-25459 Msa1356510:intron 40.0%
! TAATGGATCTCATTCCCTCA+AGG + tig0015629:25466-25485 None:intergenic 40.0%
GAGGGAATGAGATCCATTAT+AGG - tig0015629:25467-25486 Msa1356510:intron 40.0%
! TGTGCGTACACTTTTATGTC+GGG - tig0015629:25661-25680 Msa1356510:intron 40.0%
CACTAAAAATTCCTGGCTAG+GGG + tig0015629:25857-25876 None:intergenic 40.0%
GAAAGAAGAGAGGAGAAGAG+AGG + tig0015629:20613-20632 None:intergenic 45.0%
ACGAATCGGTGAAAGAAGAG+AGG + tig0015629:20623-20642 None:intergenic 45.0%
!! TCTCTTCTTTCACCGATTCG+TGG - tig0015629:20622-20641 Msa1356510:three_prime_UTR 45.0%
!! AGAAGTACTCACAGACACGA+CGG + tig0015629:20673-20692 None:intergenic 45.0%
AATTCATCGCACTGAAGGGT+TGG - tig0015629:20819-20838 Msa1356510:three_prime_UTR 45.0%
TGCTTCATTATGGGCCTGTT+TGG - tig0015629:21083-21102 Msa1356510:intron 45.0%
GACGTAAAACCAGAGCACAT+AGG + tig0015629:21339-21358 None:intergenic 45.0%
! ACAAGCAGCCAGCTTGTTTA+GGG + tig0015629:21462-21481 None:intergenic 45.0%
! TACAAGCAGCCAGCTTGTTT+AGG + tig0015629:21463-21482 None:intergenic 45.0%
TGAGCACGAAGATTAAGCTC+AGG + tig0015629:21510-21529 None:intergenic 45.0%
! TACCATTAAAGAGCGCGAGT+TGG - tig0015629:21638-21657 Msa1356510:intron 45.0%
ATCCAACTCGCGCTCTTTAA+TGG + tig0015629:21643-21662 None:intergenic 45.0%
! CGAAAATTTAGGTGCCACAG+AGG - tig0015629:21689-21708 Msa1356510:intron 45.0%
TGTGTCAAATTGGTCCTGCA+AGG + tig0015629:21919-21938 None:intergenic 45.0%
CAACAGCTAGAAGCAAGATG+GGG + tig0015629:22084-22103 None:intergenic 45.0%
AGGTAGAGTTACACAGCTTG+TGG + tig0015629:22111-22130 None:intergenic 45.0%
!! AGCTTTGGAAGGGATGTCAA+AGG + tig0015629:22224-22243 None:intergenic 45.0%
!! AAGGAACTGCAGCTTTGGAA+GGG + tig0015629:22234-22253 None:intergenic 45.0%
!! TAAGGAACTGCAGCTTTGGA+AGG + tig0015629:22235-22254 None:intergenic 45.0%
AGACTAAGGAACTGCAGCTT+TGG + tig0015629:22239-22258 None:intergenic 45.0%
CTTGAAGTCCAAAACTCGGA+GGG + tig0015629:22324-22343 None:intergenic 45.0%
TCTTGAAGTCCAAAACTCGG+AGG + tig0015629:22325-22344 None:intergenic 45.0%
TGTCTCTTAATGGCAAGACC+AGG - tig0015629:22465-22484 Msa1356510:intron 45.0%
TTAATGGCAAGACCAGGTTG+TGG - tig0015629:22471-22490 Msa1356510:intron 45.0%
AAACAAGGGCTAAGACAGAC+TGG + tig0015629:22540-22559 None:intergenic 45.0%
TCGCTTCTAAACGTTCCTAC+AGG + tig0015629:22873-22892 None:intergenic 45.0%
!! TCCGTAGCTTCTGAAACATC+TGG + tig0015629:22961-22980 None:intergenic 45.0%
AGATGTTTCAGAAGCTACGG+AGG - tig0015629:22960-22979 Msa1356510:intron 45.0%
GGAGTAGGAGGAATCACTTT+GGG + tig0015629:22997-23016 None:intergenic 45.0%
TGGAGTAGGAGGAATCACTT+TGG + tig0015629:22998-23017 None:intergenic 45.0%
!! GTGTTGTTTAATGGAGGCCA+TGG - tig0015629:23254-23273 Msa1356510:intron 45.0%
GAGAAAATTCCGCCATGCTA+AGG + tig0015629:23293-23312 None:intergenic 45.0%
! TTCAGGCCAAGCCTTTTGTT+CGG + tig0015629:23502-23521 None:intergenic 45.0%
GGGTGGCTTATTTGCATTTG+AGG - tig0015629:23815-23834 Msa1356510:intron 45.0%
GGCTTATTTGCATTTGAGGG+TGG - tig0015629:23819-23838 Msa1356510:intron 45.0%
CTATTGCTGCCATCTCTTAG+AGG - tig0015629:24324-24343 Msa1356510:CDS 45.0%
ATTGCTGCCATCTCTTAGAG+GGG - tig0015629:24326-24345 Msa1356510:CDS 45.0%
TACATGTTTCTTCTGCGTGC+AGG - tig0015629:24389-24408 Msa1356510:CDS 45.0%
GAGGGCCAAAATCACAACTT+TGG + tig0015629:24561-24580 None:intergenic 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG - tig0015629:24622-24641 Msa1356510:CDS 45.0%
GCCTGGAAAGTAAACTTAGG+GGG + tig0015629:24657-24676 None:intergenic 45.0%
GGCCTGGAAAGTAAACTTAG+GGG + tig0015629:24658-24677 None:intergenic 45.0%
GGGCCTGGAAAGTAAACTTA+GGG + tig0015629:24659-24678 None:intergenic 45.0%
!! GTTGCAATTTTAGTCCCTCG+TGG + tig0015629:24724-24743 None:intergenic 45.0%
! GGGGGCCAAAATCACAATTT+TGG - tig0015629:24786-24805 Msa1356510:intron 45.0%
!! TGTTAACAGGCACTGAAGTC+TGG - tig0015629:25049-25068 Msa1356510:intron 45.0%
TCAAGGCCAAGGATGAGAAT+AGG + tig0015629:25449-25468 None:intergenic 45.0%
!! TATTCTCATCCTTGGCCTTG+AGG - tig0015629:25448-25467 Msa1356510:intron 45.0%
!! ATTCTCATCCTTGGCCTTGA+GGG - tig0015629:25449-25468 Msa1356510:intron 45.0%
! CTTTTTGCAGGACTAGAGTG+AGG - tig0015629:25633-25652 Msa1356510:intron 45.0%
!!! AACTATTTTTTTTTTTTTTA+AGG - tig0015629:21742-21761 Msa1356510:intron 5.0%
!! TTCACCGATTCGTGGTGTTC+CGG - tig0015629:20630-20649 Msa1356510:three_prime_UTR 50.0%
CACATAGGGCCTGTTTGGAT+TGG + tig0015629:21324-21343 None:intergenic 50.0%
!! TAATGGGTTGTAGACTGGCC+CGG - tig0015629:21401-21420 Msa1356510:intron 50.0%
! GCTGAAATCCCTCCGAGTTT+TGG - tig0015629:22313-22332 Msa1356510:intron 50.0%
!! AAGGCAGAATGGAAGCACCA+TGG + tig0015629:23274-23293 None:intergenic 50.0%
GCTTCCATTCTGCCTTAGCA+TGG - tig0015629:23278-23297 Msa1356510:intron 50.0%
TCCATTCTGCCTTAGCATGG+CGG - tig0015629:23281-23300 Msa1356510:intron 50.0%
CACCTTAAGGTGCAACAGCA+AGG - tig0015629:23399-23418 Msa1356510:intron 50.0%
!! CTCCTTGCTGTTGCACCTTA+AGG + tig0015629:23404-23423 None:intergenic 50.0%
TTGCTGCCATCTCTTAGAGG+GGG - tig0015629:24327-24346 Msa1356510:CDS 50.0%
! CATGTACCCCCTCTAAGAGA+TGG + tig0015629:24336-24355 None:intergenic 50.0%
GGGGCTAAAATTGCCATGAG+GGG + tig0015629:24638-24657 None:intergenic 50.0%
GGGGGCTAAAATTGCCATGA+GGG + tig0015629:24639-24658 None:intergenic 50.0%
AGGGGGCTAAAATTGCCATG+AGG + tig0015629:24640-24659 None:intergenic 50.0%
GCCCCCTAAGTTTACTTTCC+AGG - tig0015629:24653-24672 Msa1356510:CDS 50.0%
GGGGCCTGGAAAGTAAACTT+AGG + tig0015629:24660-24679 None:intergenic 50.0%
TAATGGTTGGGTGTGTTGGG+CGG + tig0015629:25373-25392 None:intergenic 50.0%
GGCCAAGGATGAGAATAGGT+AGG + tig0015629:25445-25464 None:intergenic 50.0%
ATCTCATTCCCTCAAGGCCA+AGG + tig0015629:25460-25479 None:intergenic 50.0%
CAGCAGCTATTCTCCAAGAG+GGG + tig0015629:25768-25787 None:intergenic 50.0%
GCAGCAGCTATTCTCCAAGA+GGG + tig0015629:25769-25788 None:intergenic 50.0%
AGCAGCAGCTATTCTCCAAG+AGG + tig0015629:25770-25789 None:intergenic 50.0%
GTGACCGGAACACCACGAAT+CGG + tig0015629:20637-20656 None:intergenic 55.0%
GGAGGAACGGAAAGAGTGAC+CGG + tig0015629:20652-20671 None:intergenic 55.0%
TCACAGACACGACGGAGGAA+CGG + tig0015629:20665-20684 None:intergenic 55.0%
AGTACTCACAGACACGACGG+AGG + tig0015629:20670-20689 None:intergenic 55.0%
CAGAGCACATAGGGCCTGTT+TGG + tig0015629:21329-21348 None:intergenic 55.0%
CAAACAGGCCCTATGTGCTC+TGG - tig0015629:21327-21346 Msa1356510:intron 55.0%
AGTCTCACCATCTCCCTACG+AGG + tig0015629:21579-21598 None:intergenic 55.0%
GACTCACTGCTGACCTGATC+TGG - tig0015629:21595-21614 Msa1356510:intron 55.0%
CTCGGAGGGATTTCAGCTTG+TGG + tig0015629:22310-22329 None:intergenic 55.0%
! TCTGGAGTTTCAACAGGCGC+TGG + tig0015629:22943-22962 None:intergenic 55.0%
TCCGCCATGCTAAGGCAGAA+TGG + tig0015629:23285-23304 None:intergenic 55.0%
TTGTAAACGGAGGCCTGCCA+TGG - tig0015629:23330-23349 Msa1356510:intron 55.0%
AACATGCCATTGCACCGCCA+TGG + tig0015629:23350-23369 None:intergenic 55.0%
CAGGGTCCGAACAAAAGGCT+TGG - tig0015629:23493-23512 Msa1356510:intron 55.0%
GGGTATGCTTTCTGCTCCAC+TGG - tig0015629:23895-23914 Msa1356510:intron 55.0%
CTAACAGCAGTAGGGCGTAC+CGG - tig0015629:24155-24174 Msa1356510:intron 55.0%
TGACTCGAAATTAGGGGGCC+TGG + tig0015629:24674-24693 None:intergenic 55.0%
AGGGGGCTAAAATTGCCACG+AGG - tig0015629:24706-24725 Msa1356510:intron 55.0%
GGGGGCTAAAATTGCCACGA+GGG - tig0015629:24707-24726 Msa1356510:intron 55.0%
GGGGGTTTCAATTCCCCTCT+TGG - tig0015629:25752-25771 Msa1356510:intron 55.0%
! GAGCGCGAGTTGGATCTGAG+AGG - tig0015629:21648-21667 Msa1356510:intron 60.0%
TAAACGGAGGCCTGCCATGG+CGG - tig0015629:23333-23352 Msa1356510:intron 60.0%
!!! GGCTTTTTTGGCCCCTAGCC+AGG - tig0015629:25843-25862 Msa1356510:intron 60.0%
TGCCATTGCACCGCCATGGC+AGG + tig0015629:23346-23365 None:intergenic 65.0%
GGCCTGCCATGGCGGTGCAA+TGG - tig0015629:23341-23360 Msa1356510:intron 70.0%
Chromosome Type Strat End Strand Name
tig0015629 gene 20551 26064 20551 ID=Msa1356510;Name=Msa1356510
tig0015629 mRNA 20551 26064 20551 ID=Msa1356510-mRNA-1;Parent=Msa1356510;Name=Msa1356510-mRNA-1;_AED=0.09;_eAED=0.09;_QI=134|0.83|1|1|0.83|0.71|7|416|258
tig0015629 exon 20551 20972 20551 ID=Msa1356510-mRNA-1:exon:9959;Parent=Msa1356510-mRNA-1
tig0015629 exon 21408 21557 21408 ID=Msa1356510-mRNA-1:exon:9958;Parent=Msa1356510-mRNA-1
tig0015629 exon 23577 23738 23577 ID=Msa1356510-mRNA-1:exon:9957;Parent=Msa1356510-mRNA-1
tig0015629 exon 24257 24462 24257 ID=Msa1356510-mRNA-1:exon:9956;Parent=Msa1356510-mRNA-1
tig0015629 exon 24562 24691 24562 ID=Msa1356510-mRNA-1:exon:9955;Parent=Msa1356510-mRNA-1
tig0015629 exon 24905 25031 24905 ID=Msa1356510-mRNA-1:exon:9954;Parent=Msa1356510-mRNA-1
tig0015629 exon 25935 26064 25935 ID=Msa1356510-mRNA-1:exon:9953;Parent=Msa1356510-mRNA-1
tig0015629 five_prime_UTR 25935 26064 25935 ID=Msa1356510-mRNA-1:five_prime_utr;Parent=Msa1356510-mRNA-1
tig0015629 five_prime_UTR 25028 25031 25028 ID=Msa1356510-mRNA-1:five_prime_utr;Parent=Msa1356510-mRNA-1
tig0015629 CDS 24905 25027 24905 ID=Msa1356510-mRNA-1:cds;Parent=Msa1356510-mRNA-1
tig0015629 CDS 24562 24691 24562 ID=Msa1356510-mRNA-1:cds;Parent=Msa1356510-mRNA-1
tig0015629 CDS 24257 24462 24257 ID=Msa1356510-mRNA-1:cds;Parent=Msa1356510-mRNA-1
tig0015629 CDS 23577 23738 23577 ID=Msa1356510-mRNA-1:cds;Parent=Msa1356510-mRNA-1
tig0015629 CDS 21408 21557 21408 ID=Msa1356510-mRNA-1:cds;Parent=Msa1356510-mRNA-1
tig0015629 CDS 20967 20972 20967 ID=Msa1356510-mRNA-1:cds;Parent=Msa1356510-mRNA-1
tig0015629 three_prime_UTR 20551 20966 20551 ID=Msa1356510-mRNA-1:three_prime_utr;Parent=Msa1356510-mRNA-1
Gene Sequence

>Msa1356510

ATGGTGAGACTCACTGCTGACCTGATCTGGAAAAGTCCTCATTTCTTCAATACCATTAAAGAGCGCGAGTTGGATCTGAGAGGCAACAAAATATCTGTAATCGAAAATTTAGGTGCCACAGAGGACCAATTTGACACAGTAGATTTATCCGACAATGAGATTGTCAAATTGGAAAACTTACCAAATCTTAACCGATTGGGTACACTACTCATTAACAACAACAGGATTACTAGAATTAATCCTAATATTGGAGAGTTCCTACCGAATTTACACACACTAGTTCTCACAAACAACAGGATTGTAAACTTAGTAGAAATTGATCCTTTGACATCCCTTCCAAAGCTGCAGTTCCTTAGTCTTCTTGACAACAATATTACAAAAAAAGTGAATTATAGGCTTTATGTTATCCACAAGCTGAAATCCCTCCGAGTTTTGGACTTCAAGAAAGTGAAAGATAAGGAACGTTTAGAAGCGAAAAACTTGTTTGAATCAAAGGAAGCTATAGAAGAAGCTCAAAACACACCAGCGCCTGTTGAAACTCCAGATGTTTCAGAAGCTACGGAGGAACAACAGACACCCAAAGTGATTCCTCCTACTCCAGAGCAAATTATTGCTATTAAGGCACTGAAGTCTGGCCAACTTCCTGCAGATCTTAAAAGCTTGACTGATAATATGATGATTGATAATGTCAATGAAAAACAAGATGTGGTTCCTGATGAATCTAAAGATACACAAGAGCAGAGTAATACTGATTCTACTGCAATGGAACAGGACTAG

Protein sequence

>Msa1356510

MVRLTADLIWKSPHFFNTIKERELDLRGNKISVIENLGATEDQFDTVDLSDNEIVKLENLPNLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLTSLPKLQFLSLLDNNITKKVNYRLYVIHKLKSLRVLDFKKVKDKERLEAKNLFESKEAIEEAQNTPAPVETPDVSEATEEQQTPKVIPPTPEQIIAIKALKSGQLPADLKSLTDNMMIDNVNEKQDVVPDESKDTQEQSNTDSTAMEQD*