Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933510 | XP_003618179.1 | 93.033 | 488 | 19 | 8 | 1 | 479 | 1 | 482 | 0.0 | 906 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933510 | sp|Q8LPJ5|ICDHP_ARATH | 82.069 | 435 | 63 | 4 | 55 | 475 | 48 | 481 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0933510 | Msa0970930 | 0.845549 | 3.789390e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933510 | MtrunA17_Chr6g0449881 | 93.033 | 488 | 19 | 8 | 1 | 479 | 1 | 482 | 0.0 | 906 |
| Msa0933510 | MtrunA17_Chr5g0433901 | 79.310 | 406 | 77 | 3 | 74 | 473 | 6 | 410 | 0.0 | 668 |
| Msa0933510 | MtrunA17_Chr2g0309401 | 76.699 | 412 | 89 | 3 | 74 | 479 | 6 | 416 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933510 | AT5G14590.1 | 82.069 | 435 | 63 | 4 | 55 | 475 | 48 | 481 | 0.0 | 746 |
| Msa0933510 | AT1G54340.1 | 76.790 | 405 | 88 | 2 | 74 | 473 | 6 | 409 | 0.0 | 654 |
| Msa0933510 | AT1G65930.1 | 76.847 | 406 | 85 | 4 | 74 | 473 | 6 | 408 | 0.0 | 648 |
| Msa0933510 | AT1G54340.2 | 76.792 | 293 | 62 | 2 | 74 | 361 | 6 | 297 | 5.00e-169 | 478 |
Find 139 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCTTTCCTAACATTCT+AGG | 0.153931 | 6_3:+1978610 | None:intergenic |
| GGGTATATTGCGGCATATTA+TGG | 0.223017 | 6_3:+1981829 | None:intergenic |
| CCAAAGTCCCAAAGAATAAT+TGG | 0.239083 | 6_3:+1978561 | None:intergenic |
| TAAATTGTCCAATTATTCTT+TGG | 0.243027 | 6_3:-1978569 | Msa0933510:three_prime_UTR |
| GACATTACCAGAAATAATTC+TGG | 0.266401 | 6_3:+1981808 | None:intergenic |
| CAGATTTAAAGACATATTTC+AGG | 0.273780 | 6_3:-1981066 | Msa0933510:CDS |
| CTGGAGCGTCGCCGTCTTCT+GGG | 0.277774 | 6_3:+1981478 | None:intergenic |
| GGGAAGCTTAAGCTGGTATT+TGG | 0.283456 | 6_3:-1981617 | Msa0933510:intron |
| GAGACCCGAGTCAAAGAATT+TGG | 0.286449 | 6_3:-1982899 | Msa0933510:CDS |
| CTTTGCTGAGAAAGTTAAAT+TGG | 0.296379 | 6_3:-1984070 | Msa0933510:intron |
| AAATCACAGCCAACGTATAT+CGG | 0.306906 | 6_3:-1978483 | Msa0933510:three_prime_UTR |
| ATGAAATGACAAGGATTATA+TGG | 0.309197 | 6_3:-1985571 | Msa0933510:CDS |
| AAAGTGAAGGTGGGTATGTC+TGG | 0.310572 | 6_3:-1980861 | Msa0933510:CDS |
| CCAATTATTCTTTGGGACTT+TGG | 0.315222 | 6_3:-1978561 | Msa0933510:three_prime_UTR |
| AATATACCCAGAATTATTTC+TGG | 0.315808 | 6_3:-1981815 | Msa0933510:intron |
| GAATGGAAGAGAAGGTTGTT+AGG | 0.318076 | 6_3:+1985846 | None:intergenic |
| GCATGCCTACCAATACAAAT+TGG | 0.320367 | 6_3:+1981686 | None:intergenic |
| GATCTTGCCCTTCTGATTCA+TGG | 0.323534 | 6_3:-1979287 | Msa0933510:CDS |
| AAATTGTCCAATTATTCTTT+GGG | 0.336437 | 6_3:-1978568 | Msa0933510:three_prime_UTR |
| AGTTTGAAGAACACTCAATA+TGG | 0.356857 | 6_3:-1981016 | Msa0933510:intron |
| ATGTTCCTTATTGTTCCATT+GGG | 0.363670 | 6_3:+1982854 | None:intergenic |
| AATCAGAAGGGCAAGATCTT+TGG | 0.363956 | 6_3:+1979292 | None:intergenic |
| AATCCTAGCCCTAGAATGTT+AGG | 0.365987 | 6_3:-1978619 | Msa0933510:three_prime_UTR |
| GGTATATTGCGGCATATTAT+GGG | 0.383958 | 6_3:+1981830 | None:intergenic |
| CGCTAATCCAATCGTCGAAA+TGG | 0.387210 | 6_3:-1985691 | Msa0933510:CDS |
| TTAAATTGGAAGGTGCAATT+AGG | 0.391826 | 6_3:-1984056 | Msa0933510:intron |
| TGGATTTGTGCAGGGTGTCC+AGG | 0.395318 | 6_3:-1978762 | Msa0933510:intron |
| AATGTTCCTTATTGTTCCAT+TGG | 0.398523 | 6_3:+1982853 | None:intergenic |
| GCAGCTTATCTTTCCTTACT+TGG | 0.398625 | 6_3:-1984278 | Msa0933510:intron |
| CATACATGTTAGACTGTTGC+AGG | 0.400602 | 6_3:+1978670 | None:intergenic |
| TTGATGATTTAGTGCATGTT+TGG | 0.406729 | 6_3:-1978200 | Msa0933510:three_prime_UTR |
| CAGTCCAAATTCTTTGACTC+GGG | 0.407260 | 6_3:+1982895 | None:intergenic |
| ATTGCGATTGTGATTATTGA+AGG | 0.411352 | 6_3:+1985770 | None:intergenic |
| TTCAGGAGGTTTATGAAGAA+AGG | 0.418139 | 6_3:-1981049 | Msa0933510:CDS |
| TGTGCAGGATTCGGCTCATT+GGG | 0.424875 | 6_3:-1979975 | Msa0933510:intron |
| AATGGAAGAGAAGGTTGTTA+GGG | 0.425670 | 6_3:+1985847 | None:intergenic |
| CAGTAGTGTTAGCCTATGTT+TGG | 0.429015 | 6_3:+1978440 | None:intergenic |
| TGGAAGAAACCAATTTGTAT+TGG | 0.432227 | 6_3:-1981695 | Msa0933510:CDS |
| GTGTGCAGGATTCGGCTCAT+TGG | 0.439024 | 6_3:-1979976 | Msa0933510:intron |
| TTTATGTTCAAATCCAAGTA+AGG | 0.439169 | 6_3:+1984265 | None:intergenic |
| TGTATTGGTAGGCATGCTTT+TGG | 0.443034 | 6_3:-1981680 | Msa0933510:CDS |
| TTACCGTCCATTTCGACGAT+TGG | 0.444726 | 6_3:+1985684 | None:intergenic |
| TTTCCTAACATTCTAGGGCT+AGG | 0.446110 | 6_3:+1978616 | None:intergenic |
| GAAGCCCCAATGGAACAATA+AGG | 0.446836 | 6_3:-1982859 | Msa0933510:CDS |
| AATGCTTTCCTAACATTCTA+GGG | 0.452269 | 6_3:+1978611 | None:intergenic |
| AACTGGAGTGGCAGCTGGAA+TGG | 0.453158 | 6_3:-1978253 | Msa0933510:three_prime_UTR |
| GATTGGATTAGCGACATGAA+TGG | 0.457803 | 6_3:+1985701 | None:intergenic |
| GACACTAAGAATGGGGAAGC+AGG | 0.458019 | 6_3:+1978532 | None:intergenic |
| GGACACGAGGACTGGAACAT+AGG | 0.467878 | 6_3:-1979697 | Msa0933510:intron |
| TACAGTTCCATGAGCTGCCT+CGG | 0.471319 | 6_3:+1979790 | None:intergenic |
| TGAAGCAATACTGTTCGTAC+TGG | 0.478811 | 6_3:+1979730 | None:intergenic |
| ATGGAAGATGATCAAGGATA+AGG | 0.491495 | 6_3:-1985552 | Msa0933510:intron |
| CTGCAACAGTCTAACATGTA+TGG | 0.492491 | 6_3:-1978669 | Msa0933510:exon |
| AAGAAGAAGCGAAGCATCGA+AGG | 0.496959 | 6_3:+1985733 | None:intergenic |
| AAGGAGTTGAATGGAAGAGA+AGG | 0.497972 | 6_3:+1985838 | None:intergenic |
| CAAAGTGATTTACTTGCTCA+AGG | 0.500873 | 6_3:-1980811 | Msa0933510:intron |
| AATACCAGCTTAAGCTTCCC+TGG | 0.502028 | 6_3:+1981620 | None:intergenic |
| GGGTCTCATGACTTCTGTGC+TGG | 0.504679 | 6_3:-1979955 | Msa0933510:intron |
| ATCTTGCCCTTCTGATTCAT+GGG | 0.504827 | 6_3:-1979286 | Msa0933510:CDS |
| CTTGATGTTCATAATTTCAA+AGG | 0.505521 | 6_3:-1981450 | Msa0933510:CDS |
| TTCTCAAGAAATATGATGGC+AGG | 0.506640 | 6_3:-1981204 | Msa0933510:intron |
| GCTGAGAAAGTTAAATTGGA+AGG | 0.507090 | 6_3:-1984066 | Msa0933510:intron |
| TTATGAACATCAAGCTCCAC+TGG | 0.507274 | 6_3:+1981459 | None:intergenic |
| GTTCATAATTTCAAAGGCCC+TGG | 0.508228 | 6_3:-1981444 | Msa0933510:CDS |
| ATTTGCATGGACACGAGGAC+TGG | 0.508607 | 6_3:-1979705 | Msa0933510:CDS |
| AATCACAGCCAACGTATATC+GGG | 0.509033 | 6_3:-1978482 | Msa0933510:three_prime_UTR |
| TGTGTTGAGACAGTGGAGTC+AGG | 0.516129 | 6_3:-1979323 | Msa0933510:CDS |
| ACAATTCTCAAGAAATATGA+TGG | 0.517960 | 6_3:-1981208 | Msa0933510:CDS |
| GTTATGTACCAGAGCCAAGC+TGG | 0.519400 | 6_3:-1979393 | Msa0933510:intron |
| AGGAAGAGTGATGATGAAGA+AGG | 0.524604 | 6_3:+1985819 | None:intergenic |
| ATTGGATTAGCGACATGAAT+GGG | 0.525305 | 6_3:+1985702 | None:intergenic |
| GCCACTGATACAGTAATCAA+TGG | 0.528157 | 6_3:-1981644 | Msa0933510:CDS |
| TGCTGAATCATCCATGTCAC+TGG | 0.529646 | 6_3:-1981272 | Msa0933510:CDS |
| TTAGAAGCCGAGGCAGCTCA+TGG | 0.530661 | 6_3:-1979797 | Msa0933510:CDS |
| GTTAGACTGTTGCAGGCTCT+CGG | 0.534715 | 6_3:+1978677 | None:intergenic |
| GGATTTGTGCAGGGTGTCCA+GGG | 0.537770 | 6_3:-1978761 | Msa0933510:intron |
| TCAGTCCAAATTCTTTGACT+CGG | 0.540110 | 6_3:+1982894 | None:intergenic |
| ACATTACCAGAAATAATTCT+GGG | 0.543809 | 6_3:+1981809 | None:intergenic |
| TGCTATGTATAATGTTGATG+AGG | 0.548975 | 6_3:-1981412 | Msa0933510:intron |
| TGGACCAGGGAAGCTTAAGC+TGG | 0.551492 | 6_3:-1981624 | Msa0933510:CDS |
| ACACTAAGAATGGGGAAGCA+GGG | 0.554817 | 6_3:+1978533 | None:intergenic |
| AGAAACCAATTTGTATTGGT+AGG | 0.556282 | 6_3:-1981691 | Msa0933510:CDS |
| AGAAGACGGCGACGCTCCAG+TGG | 0.558871 | 6_3:-1981475 | Msa0933510:CDS |
| CAGCTCATGGAACTGTAACT+CGG | 0.560450 | 6_3:-1979784 | Msa0933510:CDS |
| AGATAGCATTGTGAGAGTGC+TGG | 0.561723 | 6_3:+1985887 | None:intergenic |
| CACAGCATCGATAAATTCCT+CGG | 0.561743 | 6_3:+1978723 | None:intergenic |
| GTATTGCTTCAATATTTGCA+TGG | 0.563391 | 6_3:-1979718 | Msa0933510:CDS |
| ATCAAAGAGAGAGAATAAGA+AGG | 0.565725 | 6_3:-1985956 | Msa0933510:five_prime_UTR |
| GGCTAACACTACTGCAGTAG+AGG | 0.567750 | 6_3:-1978431 | Msa0933510:three_prime_UTR |
| TGGGCTTGCAAGAATTATGA+TGG | 0.572955 | 6_3:-1980841 | Msa0933510:CDS |
| GTAGAAGTTTATCCAAACAT+AGG | 0.573616 | 6_3:-1978452 | Msa0933510:three_prime_UTR |
| GGTGTTCAAGTAATATTCCC+TGG | 0.574655 | 6_3:+1978744 | None:intergenic |
| AGATCGGTGCATGATGAGGA+AGG | 0.576583 | 6_3:+1985799 | None:intergenic |
| AGAGAGATCGGTGCATGATG+AGG | 0.578673 | 6_3:+1985795 | None:intergenic |
| AAATCAAAATCAATACTGCA+TGG | 0.578689 | 6_3:+1978221 | None:intergenic |
| AGAAGAAGCGAAGCATCGAA+GGG | 0.579584 | 6_3:+1985734 | None:intergenic |
| CACTAAGAATGGGGAAGCAG+GGG | 0.579590 | 6_3:+1978534 | None:intergenic |
| TTAGGAAAGCATTGAACAGA+GGG | 0.580551 | 6_3:-1978601 | Msa0933510:three_prime_UTR |
| AAGTGAAGGTGGGTATGTCT+GGG | 0.583822 | 6_3:-1980860 | Msa0933510:CDS |
| GAAAATCACTCACTTGAGAG+TGG | 0.584262 | 6_3:+1984174 | None:intergenic |
| GGCTTCTAATGTCTTGCCGT+CGG | 0.585294 | 6_3:+1979811 | None:intergenic |
| AATCCAATCGTCGAAATGGA+CGG | 0.587752 | 6_3:-1985687 | Msa0933510:intron |
| ACTTAGGCCCATGAATCAGA+AGG | 0.587974 | 6_3:+1979279 | None:intergenic |
| GATTATATGGAAGATGATCA+AGG | 0.590189 | 6_3:-1985558 | Msa0933510:CDS |
| TATGCACTCAAAAGTGAAGG+TGG | 0.592170 | 6_3:-1980871 | Msa0933510:CDS |
| AGGAGGTTTATGAAGAAAGG+TGG | 0.594881 | 6_3:-1981046 | Msa0933510:CDS |
| GTAACTTCAGGTACGAGCAT+AGG | 0.596445 | 6_3:-1980915 | Msa0933510:intron |
| ATGATGAAGAAGGAGTTGAA+TGG | 0.597283 | 6_3:+1985829 | None:intergenic |
| TCAATATTTGCATGGACACG+AGG | 0.602243 | 6_3:-1979710 | Msa0933510:CDS |
| TCCATTGATTACTGTATCAG+TGG | 0.602369 | 6_3:+1981643 | None:intergenic |
| GATACAGTAATCAATGGACC+AGG | 0.603039 | 6_3:-1981638 | Msa0933510:CDS |
| TCTAATTCAGTCCCAGAAGA+CGG | 0.605583 | 6_3:-1981489 | Msa0933510:intron |
| ACAAATACAAATTGCACGTG+AGG | 0.610264 | 6_3:-1978356 | Msa0933510:three_prime_UTR |
| AAATAATTCTGGGTATATTG+CGG | 0.612272 | 6_3:+1981819 | None:intergenic |
| GGCTGCATGTGTTGAGACAG+TGG | 0.612372 | 6_3:-1979330 | Msa0933510:CDS |
| ATTTAAAGACATATTTCAGG+AGG | 0.612668 | 6_3:-1981063 | Msa0933510:CDS |
| CGAGGAATTTATCGATGCTG+TGG | 0.613365 | 6_3:-1978722 | Msa0933510:CDS |
| TGTTCCTTATTGTTCCATTG+GGG | 0.614208 | 6_3:+1982855 | None:intergenic |
| CGGCAAGACATTAGAAGCCG+AGG | 0.619121 | 6_3:-1979807 | Msa0933510:CDS |
| TCTATGTGGAGAAGCCCCAA+TGG | 0.620576 | 6_3:-1982869 | Msa0933510:CDS |
| AGGTTTATGAAGAAAGGTGG+CGG | 0.620816 | 6_3:-1981043 | Msa0933510:CDS |
| GCATAGGCTAATTGATGACA+TGG | 0.623095 | 6_3:-1980899 | Msa0933510:CDS |
| AATTTGCAGTTATCTTCCGA+CGG | 0.625126 | 6_3:-1979827 | Msa0933510:intron |
| AATTTGGACTGAAGTCTATG+TGG | 0.627890 | 6_3:-1982883 | Msa0933510:CDS |
| TTATTGAAGGAAAGAGAGAT+CGG | 0.630912 | 6_3:+1985783 | None:intergenic |
| GCATATGCACTCAAAAGTGA+AGG | 0.633024 | 6_3:-1980874 | Msa0933510:CDS |
| TACATAGCAAGAGCTACACC+AGG | 0.633459 | 6_3:+1981426 | None:intergenic |
| CAAATACAAATTGCACGTGA+GGG | 0.640069 | 6_3:-1978355 | Msa0933510:three_prime_UTR |
| ATGCACTCAAAAGTGAAGGT+GGG | 0.642981 | 6_3:-1980870 | Msa0933510:CDS |
| TCTTAGGTGATGAAATGACA+AGG | 0.649796 | 6_3:-1985580 | Msa0933510:intron |
| CTTAGGCCCATGAATCAGAA+GGG | 0.667929 | 6_3:+1979280 | None:intergenic |
| AAGAAGCGAAGCATCGAAGG+GGG | 0.669849 | 6_3:+1985736 | None:intergenic |
| GAAGAAGCGAAGCATCGAAG+GGG | 0.679156 | 6_3:+1985735 | None:intergenic |
| GTTAGGAAAGCATTGAACAG+AGG | 0.703075 | 6_3:-1978602 | Msa0933510:three_prime_UTR |
| TAGGCTAATTGATGACATGG+TGG | 0.713030 | 6_3:-1980896 | Msa0933510:CDS |
| ATACAGTAATCAATGGACCA+GGG | 0.726635 | 6_3:-1981637 | Msa0933510:CDS |
| ACATAGCAAGAGCTACACCA+GGG | 0.758638 | 6_3:+1981427 | None:intergenic |
| GGAATATTACTTGAACACCG+AGG | 0.776591 | 6_3:-1978740 | Msa0933510:CDS |
| TAGGAAAGCATTGAACAGAG+GGG | 0.791379 | 6_3:-1978600 | Msa0933510:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATATATTAAATTATT+TGG | - | chr6_3:1979143-1979162 | Msa0933510:intron | 0.0% |
| !! | AACAACAAATATAATAAATA+AGG | + | chr6_3:1978591-1978610 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATCAAATTATTG+TGG | - | chr6_3:1978700-1978719 | Msa0933510:CDS | 10.0% |
| !! | AAAGATAAAATAAAGTTAAA+TGG | - | chr6_3:1979421-1979440 | Msa0933510:intron | 10.0% |
| !!! | TGGTTAGTTTTAAATTTTAA+TGG | - | chr6_3:1980448-1980467 | Msa0933510:intron | 15.0% |
| !! | AGAAGTTTCAATTAATAAAT+GGG | + | chr6_3:1980840-1980859 | None:intergenic | 15.0% |
| !! | TAGAAGTTTCAATTAATAAA+TGG | + | chr6_3:1980841-1980860 | None:intergenic | 15.0% |
| !!! | ATGTTCAAATTAATTTTGAA+TGG | + | chr6_3:1982098-1982117 | None:intergenic | 15.0% |
| !!! | ATTCAAAATTAATTTGAACA+TGG | - | chr6_3:1982097-1982116 | Msa0933510:intron | 15.0% |
| !!! | TGTTTAAAATGAAAAATTGA+CGG | + | chr6_3:1982655-1982674 | None:intergenic | 15.0% |
| !!! | ATTTAACTTAAGCAATTTTT+TGG | - | chr6_3:1983749-1983768 | Msa0933510:intron | 15.0% |
| !!! | TAGAGAAGTTTTTAAAAAAA+AGG | + | chr6_3:1984736-1984755 | None:intergenic | 15.0% |
| !! | AATATTGAAATGATTAAACA+TGG | + | chr6_3:1984962-1984981 | None:intergenic | 15.0% |
| !! | ACTGATATAGTTATATATAT+TGG | + | chr6_3:1985312-1985331 | None:intergenic | 15.0% |
| !!! | TATTTTGTGAAAAAAAAAAC+TGG | - | chr6_3:1985926-1985945 | Msa0933510:exon | 15.0% |
| !!! | TATTTGTTGTTTTGTTTCTT+AGG | - | chr6_3:1978600-1978619 | Msa0933510:three_prime_UTR | 20.0% |
| !!! | ATTTTTTCAATTAAGATTGC+AGG | - | chr6_3:1978820-1978839 | Msa0933510:intron | 20.0% |
| !!! | TTTTTTCAATTAAGATTGCA+GGG | - | chr6_3:1978821-1978840 | Msa0933510:intron | 20.0% |
| !!! | AACATAAAGTATTTTGATCT+GGG | - | chr6_3:1979946-1979965 | Msa0933510:intron | 20.0% |
| !! | AGTATATATTATAGAGTTTC+TGG | - | chr6_3:1980196-1980215 | Msa0933510:intron | 20.0% |
| !!! | ACAATAAGGAACATTTTAAA+TGG | - | chr6_3:1981351-1981370 | Msa0933510:intron | 20.0% |
| !! | ATGATAGAATACAAGAAAAT+AGG | - | chr6_3:1981664-1981683 | Msa0933510:CDS | 20.0% |
| !! | TATCAGTTTATTTATAGTGA+GGG | + | chr6_3:1981852-1981871 | None:intergenic | 20.0% |
| !! | ATATCAGTTTATTTATAGTG+AGG | + | chr6_3:1981853-1981872 | None:intergenic | 20.0% |
| !! | CACTATAAATAAACTGATAT+TGG | - | chr6_3:1981853-1981872 | Msa0933510:intron | 20.0% |
| !!! | TGACTTGCTATAAATATTAT+CGG | - | chr6_3:1981879-1981898 | Msa0933510:intron | 20.0% |
| !! | GTTCAAAAAATCTATTTGAA+TGG | - | chr6_3:1981982-1982001 | Msa0933510:intron | 20.0% |
| !! | TATCTGAAAATTACAGAATA+TGG | - | chr6_3:1982043-1982062 | Msa0933510:intron | 20.0% |
| !! | ATCTGAAAATTACAGAATAT+GGG | - | chr6_3:1982044-1982063 | Msa0933510:intron | 20.0% |
| !! | TCTTGATTCTTAATTCTTAT+TGG | - | chr6_3:1982427-1982446 | Msa0933510:intron | 20.0% |
| !!! | TTTAAAATGAAAAATTGACG+GGG | + | chr6_3:1982653-1982672 | None:intergenic | 20.0% |
| !!! | GTTTAAAATGAAAAATTGAC+GGG | + | chr6_3:1982654-1982673 | None:intergenic | 20.0% |
| !!! | TAAGCAATTTTTTGGTAATA+TGG | - | chr6_3:1983757-1983776 | Msa0933510:intron | 20.0% |
| !!! | AAGCAATTTTTTGGTAATAT+GGG | - | chr6_3:1983758-1983777 | Msa0933510:intron | 20.0% |
| !!! | TCATCTCTATTTTTTGTTAT+TGG | - | chr6_3:1984320-1984339 | Msa0933510:intron | 20.0% |
| !!! | CATCTCTATTTTTTGTTATT+GGG | - | chr6_3:1984321-1984340 | Msa0933510:intron | 20.0% |
| !! | TTGATGTAGATGAATATAAT+TGG | - | chr6_3:1984626-1984645 | Msa0933510:intron | 20.0% |
| !! | GGATAAAAATGAAAAATTAC+TGG | - | chr6_3:1984824-1984843 | Msa0933510:intron | 20.0% |
| !!! | TGATGTTTTATTAGAATTTC+TGG | + | chr6_3:1985137-1985156 | None:intergenic | 20.0% |
| !! | AATCAAACAATAAGCAAAAA+AGG | + | chr6_3:1985183-1985202 | None:intergenic | 20.0% |
| !! | TAAATTGTCCAATTATTCTT+TGG | - | chr6_3:1985627-1985646 | Msa0933510:intron | 20.0% |
| !! | AAATTGTCCAATTATTCTTT+GGG | - | chr6_3:1985628-1985647 | Msa0933510:intron | 20.0% |
| !! | CAAAATACTTGAAAAAAAAC+AGG | + | chr6_3:1985913-1985932 | None:intergenic | 20.0% |
| ! | ATGAAATGACAAGGATTATA+TGG | - | chr6_3:1978625-1978644 | Msa0933510:three_prime_UTR | 25.0% |
| !!! | TTTTTCAATTAAGATTGCAG+GGG | - | chr6_3:1978822-1978841 | Msa0933510:intron | 25.0% |
| ! | ATGATTATAAAAGACACGTT+TGG | + | chr6_3:1978979-1978998 | None:intergenic | 25.0% |
| ! | ACTTACATTTAGTGTCTATT+TGG | + | chr6_3:1979046-1979065 | None:intergenic | 25.0% |
| !!! | TAAGTGTTACTTCATATTGA+AGG | + | chr6_3:1979107-1979126 | None:intergenic | 25.0% |
| !! | TCATTTTCGCAAATCATTAT+AGG | + | chr6_3:1979520-1979539 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATAAGCTATCT+TGG | - | chr6_3:1979704-1979723 | Msa0933510:CDS | 25.0% |
| !!! | AACATATCACAAGTTGTTTT+CGG | - | chr6_3:1979761-1979780 | Msa0933510:CDS | 25.0% |
| ! | TCAAAAAAGCCAATCTAAAT+AGG | - | chr6_3:1979829-1979848 | Msa0933510:intron | 25.0% |
| ! | TTTATGTTCAAATCCAAGTA+AGG | + | chr6_3:1979934-1979953 | None:intergenic | 25.0% |
| !!! | GAACATAAAGTATTTTGATC+TGG | - | chr6_3:1979945-1979964 | Msa0933510:intron | 25.0% |
| !!! | ACATAAAGTATTTTGATCTG+GGG | - | chr6_3:1979947-1979966 | Msa0933510:intron | 25.0% |
| ! | ACATGCATAATATAACACAT+TGG | - | chr6_3:1980064-1980083 | Msa0933510:intron | 25.0% |
| !! | TATTATAGAGTTTCTGGATA+CGG | - | chr6_3:1980202-1980221 | Msa0933510:intron | 25.0% |
| !! | ACCTTATTAGATTTTCTTCA+GGG | - | chr6_3:1980323-1980342 | Msa0933510:intron | 25.0% |
| ! | ATTTATGTCACATATCTTTC+TGG | - | chr6_3:1980348-1980367 | Msa0933510:intron | 25.0% |
| !! | TTTTACCATTTACGAAAAGA+GGG | - | chr6_3:1980482-1980501 | Msa0933510:intron | 25.0% |
| ! | AAATGCATTATGTGAAAACA+AGG | + | chr6_3:1980728-1980747 | None:intergenic | 25.0% |
| !!! | CATTTTTTCTCTTTTTACCT+TGG | - | chr6_3:1980743-1980762 | Msa0933510:intron | 25.0% |
| ! | TGTTTATAAAAACAGAACGA+GGG | + | chr6_3:1980802-1980821 | None:intergenic | 25.0% |
| ! | TTGTTTATAAAAACAGAACG+AGG | + | chr6_3:1980803-1980822 | None:intergenic | 25.0% |
| ! | AAATTAGTGTTGTCAAATAG+TGG | - | chr6_3:1980928-1980947 | Msa0933510:intron | 25.0% |
| ! | AAATTTGTGAGTATGTTACA+AGG | + | chr6_3:1981156-1981175 | None:intergenic | 25.0% |
| ! | ATTGATGTACATATATACAG+TGG | - | chr6_3:1981482-1981501 | Msa0933510:CDS | 25.0% |
| ! | TTGTATTCTATCATTACACT+CGG | + | chr6_3:1981658-1981677 | None:intergenic | 25.0% |
| ! | CTTTAATGAAACTAACTAAG+TGG | + | chr6_3:1981721-1981740 | None:intergenic | 25.0% |
| ! | AGTTTCATTAAAGTTGTTTG+AGG | - | chr6_3:1981728-1981747 | Msa0933510:intron | 25.0% |
| ! | CAAATATAAAAAACACCAAC+AGG | + | chr6_3:1981780-1981799 | None:intergenic | 25.0% |
| !! | AATTAATTTGAACATGGATG+AGG | - | chr6_3:1982103-1982122 | Msa0933510:intron | 25.0% |
| !! | ATTAATTTGAACATGGATGA+GGG | - | chr6_3:1982104-1982123 | Msa0933510:intron | 25.0% |
| ! | AAGCAGTGAAAATTAATTTC+CGG | + | chr6_3:1982154-1982173 | None:intergenic | 25.0% |
| ! | AAGCATTTCTAAATTTCTCT+TGG | - | chr6_3:1982303-1982322 | Msa0933510:intron | 25.0% |
| !!! | GGTATTTTTTATTTCTTTCC+AGG | - | chr6_3:1982327-1982346 | Msa0933510:intron | 25.0% |
| ! | AAATAATTCTGGGTATATTG+CGG | + | chr6_3:1982380-1982399 | None:intergenic | 25.0% |
| ! | AATATACCCAGAATTATTTC+TGG | - | chr6_3:1982381-1982400 | Msa0933510:intron | 25.0% |
| ! | ACATTACCAGAAATAATTCT+GGG | + | chr6_3:1982390-1982409 | None:intergenic | 25.0% |
| ! | ACTAGAAAATTAGTTCCAAA+TGG | + | chr6_3:1982473-1982492 | None:intergenic | 25.0% |
| !!! | GAACTAATTTTCTAGTTTAC+AGG | - | chr6_3:1982477-1982496 | Msa0933510:intron | 25.0% |
| !!! | TAATTTTCTAGTTTACAGGA+TGG | - | chr6_3:1982481-1982500 | Msa0933510:intron | 25.0% |
| ! | CTTGATGTTCATAATTTCAA+AGG | - | chr6_3:1982746-1982765 | Msa0933510:intron | 25.0% |
| !! | TTTCTTGAGAATTGTGTTTT+TGG | + | chr6_3:1982983-1983002 | None:intergenic | 25.0% |
| ! | ACAATTCTCAAGAAATATGA+TGG | - | chr6_3:1982988-1983007 | Msa0933510:intron | 25.0% |
| ! | CAGATTTAAAGACATATTTC+AGG | - | chr6_3:1983130-1983149 | Msa0933510:intron | 25.0% |
| ! | ATTTAAAGACATATTTCAGG+AGG | - | chr6_3:1983133-1983152 | Msa0933510:intron | 25.0% |
| ! | CCAAAAGATTCAAAACAATT+TGG | + | chr6_3:1983226-1983245 | None:intergenic | 25.0% |
| !!! | CCAAATTGTTTTGAATCTTT+TGG | - | chr6_3:1983223-1983242 | Msa0933510:intron | 25.0% |
| ! | TTACCAGTCATAAAAAACAA+TGG | + | chr6_3:1983480-1983499 | None:intergenic | 25.0% |
| !!! | ATTTTTTCCAATACAGAGAA+AGG | - | chr6_3:1983537-1983556 | Msa0933510:intron | 25.0% |
| ! | TACATCATGATAACTGAAAT+TGG | - | chr6_3:1983600-1983619 | Msa0933510:intron | 25.0% |
| ! | TGATAACTGAAATTGGTTAT+TGG | - | chr6_3:1983607-1983626 | Msa0933510:intron | 25.0% |
| ! | GATAACTGAAATTGGTTATT+GGG | - | chr6_3:1983608-1983627 | Msa0933510:intron | 25.0% |
| ! | CAAAGAAAATAATGATGGTA+TGG | + | chr6_3:1983690-1983709 | None:intergenic | 25.0% |
| ! | CCAAACAAAGAAAATAATGA+TGG | + | chr6_3:1983695-1983714 | None:intergenic | 25.0% |
| !! | CCATCATTATTTTCTTTGTT+TGG | - | chr6_3:1983692-1983711 | Msa0933510:intron | 25.0% |
| ! | CTGTTAGAAAAATATTTGTG+AGG | - | chr6_3:1983816-1983835 | Msa0933510:intron | 25.0% |
| !! | TGTCACTTGTTTGTAAAATA+TGG | + | chr6_3:1983873-1983892 | None:intergenic | 25.0% |
| ! | ATATGTTTGTGCATAAAGAA+AGG | - | chr6_3:1983924-1983943 | Msa0933510:intron | 25.0% |
| ! | ATAATATCCTCAATTGACAA+AGG | + | chr6_3:1984585-1984604 | None:intergenic | 25.0% |
| ! | AATAACAGATTCAGAAAACA+GGG | + | chr6_3:1984772-1984791 | None:intergenic | 25.0% |
| !!! | TTTTTCATTTTTATCCAGCT+TGG | + | chr6_3:1984820-1984839 | None:intergenic | 25.0% |
| !! | ACTGGATTTTTCTAATAAGT+TGG | - | chr6_3:1984842-1984861 | Msa0933510:intron | 25.0% |
| ! | TTGAAATGATTAAACATGGT+GGG | + | chr6_3:1984958-1984977 | None:intergenic | 25.0% |
| ! | ATTGAAATGATTAAACATGG+TGG | + | chr6_3:1984959-1984978 | None:intergenic | 25.0% |
| !! | AATTTCTGGACAAAAATGAA+CGG | + | chr6_3:1985123-1985142 | None:intergenic | 25.0% |
| ! | TGAAATTAATGCTAGAATGA+AGG | + | chr6_3:1985219-1985238 | None:intergenic | 25.0% |
| !!! | ATGTCTAATTGTTTTGACAT+TGG | - | chr6_3:1985414-1985433 | Msa0933510:intron | 25.0% |
| ! | AAATCAAAATCAATACTGCA+TGG | + | chr6_3:1985978-1985997 | None:intergenic | 25.0% |
| ATCAAAGAGAGAGAATAAGA+AGG | - | chr6_3:1978240-1978259 | Msa0933510:three_prime_UTR | 30.0% | |
| TTATTGAAGGAAAGAGAGAT+CGG | + | chr6_3:1978416-1978435 | None:intergenic | 30.0% | |
| ATTGCGATTGTGATTATTGA+AGG | + | chr6_3:1978429-1978448 | None:intergenic | 30.0% | |
| GATTATATGGAAGATGATCA+AGG | - | chr6_3:1978638-1978657 | Msa0933510:three_prime_UTR | 30.0% | |
| ! | TTGTGGTTTTCTATATGCTA+AGG | - | chr6_3:1978717-1978736 | Msa0933510:CDS | 30.0% |
| ATATTTCCATGAGCTTATAG+CGG | + | chr6_3:1978906-1978925 | None:intergenic | 30.0% | |
| ATAAACATGCCTTCAATTCA+AGG | - | chr6_3:1979295-1979314 | Msa0933510:CDS | 30.0% | |
| ATAAGCTGTTTATCAAGACA+GGG | + | chr6_3:1979346-1979365 | None:intergenic | 30.0% | |
| TATAAGCTGTTTATCAAGAC+AGG | + | chr6_3:1979347-1979366 | None:intergenic | 30.0% | |
| !! | GCTATAAGTTGTTTTCCATA+AGG | - | chr6_3:1979455-1979474 | Msa0933510:intron | 30.0% |
| TAGTTCTCGAATATACCTTA+TGG | + | chr6_3:1979473-1979492 | None:intergenic | 30.0% | |
| !! | ATAAACACTTTGAGACTGTT+TGG | + | chr6_3:1979795-1979814 | None:intergenic | 30.0% |
| !!! | GCTTTTTTGAGCTTATCTAT+TGG | + | chr6_3:1979819-1979838 | None:intergenic | 30.0% |
| !!! | CATAAAGTATTTTGATCTGG+GGG | - | chr6_3:1979948-1979967 | Msa0933510:intron | 30.0% |
| ! | AGTGAGTGATTTTCAATGAA+TGG | - | chr6_3:1980031-1980050 | Msa0933510:intron | 30.0% |
| CTTTGCTGAGAAAGTTAAAT+TGG | - | chr6_3:1980126-1980145 | Msa0933510:intron | 30.0% | |
| ! | TTAAATTGGAAGGTGCAATT+AGG | - | chr6_3:1980140-1980159 | Msa0933510:intron | 30.0% |
| CTTTCATGAAACTAACTAAG+TGG | + | chr6_3:1980251-1980270 | None:intergenic | 30.0% | |
| ACACAAACTAATTGCTTACT+GGG | - | chr6_3:1980280-1980299 | Msa0933510:intron | 30.0% | |
| ! | CACCTTATTAGATTTTCTTC+AGG | - | chr6_3:1980322-1980341 | Msa0933510:intron | 30.0% |
| ACCCTGAAGAAAATCTAATA+AGG | + | chr6_3:1980327-1980346 | None:intergenic | 30.0% | |
| ! | TTCAGTTTGTTTAGACCTTT+AGG | - | chr6_3:1980376-1980395 | Msa0933510:intron | 30.0% |
| ! | TCAGTTTGTTTAGACCTTTA+GGG | - | chr6_3:1980377-1980396 | Msa0933510:intron | 30.0% |
| ! | CTTTTACCATTTACGAAAAG+AGG | - | chr6_3:1980481-1980500 | Msa0933510:intron | 30.0% |
| TTTACCATTTACGAAAAGAG+GGG | - | chr6_3:1980483-1980502 | Msa0933510:intron | 30.0% | |
| !!! | AACACTGCCACATTTTTTTT+AGG | + | chr6_3:1980510-1980529 | None:intergenic | 30.0% |
| TCCCTGCTTGTAATTTAATT+TGG | - | chr6_3:1980591-1980610 | Msa0933510:intron | 30.0% | |
| GCCAAATTAAATTACAAGCA+GGG | + | chr6_3:1980595-1980614 | None:intergenic | 30.0% | |
| TGCCAAATTAAATTACAAGC+AGG | + | chr6_3:1980596-1980615 | None:intergenic | 30.0% | |
| ! | TAGAGCATCAAATACTTAAG+AGG | + | chr6_3:1980636-1980655 | None:intergenic | 30.0% |
| TCTACCAATGTTTGTTTCAT+GGG | - | chr6_3:1980652-1980671 | Msa0933510:intron | 30.0% | |
| AAATCCCATGAAACAAACAT+TGG | + | chr6_3:1980659-1980678 | None:intergenic | 30.0% | |
| TTTGTCTTACATGCTTGTAT+TGG | - | chr6_3:1980676-1980695 | Msa0933510:intron | 30.0% | |
| TTGTCTTACATGCTTGTATT+GGG | - | chr6_3:1980677-1980696 | Msa0933510:intron | 30.0% | |
| GTGAAAACAAGGTAAAATTG+CGG | + | chr6_3:1980717-1980736 | None:intergenic | 30.0% | |
| TTGAAACTTCTATTTGCTTC+AGG | - | chr6_3:1980849-1980868 | Msa0933510:CDS | 30.0% | |
| ! | TCGTACTAAATAGAGTATCA+CGG | + | chr6_3:1980999-1981018 | None:intergenic | 30.0% |
| AAAACATTCTACATAGTGCA+TGG | - | chr6_3:1981188-1981207 | Msa0933510:intron | 30.0% | |
| CAAATTAAGATCATGAGCTA+GGG | + | chr6_3:1981222-1981241 | None:intergenic | 30.0% | |
| ACAAATTAAGATCATGAGCT+AGG | + | chr6_3:1981223-1981242 | None:intergenic | 30.0% | |
| ATGTTCCTTATTGTTCCATT+GGG | + | chr6_3:1981345-1981364 | None:intergenic | 30.0% | |
| AATGTTCCTTATTGTTCCAT+TGG | + | chr6_3:1981346-1981365 | None:intergenic | 30.0% | |
| ! | AAGAGATATTAGTCTGCATA+TGG | - | chr6_3:1981505-1981524 | Msa0933510:intron | 30.0% |
| !!! | CGTTTTGTTTATTTTTCTCG+CGG | - | chr6_3:1981547-1981566 | Msa0933510:intron | 30.0% |
| !!! | GTTTTGTTTATTTTTCTCGC+GGG | - | chr6_3:1981548-1981567 | Msa0933510:intron | 30.0% |
| !! | CGGTAGTACGAATTTTATTT+CGG | + | chr6_3:1981638-1981657 | None:intergenic | 30.0% |
| ATAAGATAGATGACAGAAGA+TGG | - | chr6_3:1982013-1982032 | Msa0933510:intron | 30.0% | |
| AAAGTTGGCAATAAGTCAAA+TGG | + | chr6_3:1982070-1982089 | None:intergenic | 30.0% | |
| ! | TTAATTTGAACATGGATGAG+GGG | - | chr6_3:1982105-1982124 | Msa0933510:intron | 30.0% |
| AACCTGAATTAATTGAGCTT+TGG | - | chr6_3:1982246-1982265 | Msa0933510:intron | 30.0% | |
| AACCAAAGCTCAATTAATTC+AGG | + | chr6_3:1982251-1982270 | None:intergenic | 30.0% | |
| CATTTCTAAATTTCTCTTGG+TGG | - | chr6_3:1982306-1982325 | Msa0933510:intron | 30.0% | |
| GACATTACCAGAAATAATTC+TGG | + | chr6_3:1982391-1982410 | None:intergenic | 30.0% | |
| !! | AAATACTGAAGAGTACCATT+TGG | - | chr6_3:1982455-1982474 | Msa0933510:intron | 30.0% |
| TGGAAGAAACCAATTTGTAT+TGG | - | chr6_3:1982501-1982520 | Msa0933510:intron | 30.0% | |
| ! | AGAAACCAATTTGTATTGGT+AGG | - | chr6_3:1982505-1982524 | Msa0933510:intron | 30.0% |
| TGCTATGTATAATGTTGATG+AGG | - | chr6_3:1982784-1982803 | Msa0933510:intron | 30.0% | |
| !! | CAAGTGTTGAACATTTAGTT+AGG | + | chr6_3:1982839-1982858 | None:intergenic | 30.0% |
| GCATTACATATACACATTGA+TGG | - | chr6_3:1983247-1983266 | Msa0933510:intron | 30.0% | |
| ! | GCATGATGATTGTATGATTT+TGG | - | chr6_3:1983438-1983457 | Msa0933510:intron | 30.0% |
| GTCATAAAAAACAATGGCTA+GGG | + | chr6_3:1983474-1983493 | None:intergenic | 30.0% | |
| AGTCATAAAAAACAATGGCT+AGG | + | chr6_3:1983475-1983494 | None:intergenic | 30.0% | |
| !!! | TAGCCATTGTTTTTTATGAC+TGG | - | chr6_3:1983474-1983493 | Msa0933510:intron | 30.0% |
| AAAAAATTGACCACTTTCCA+TGG | + | chr6_3:1983524-1983543 | None:intergenic | 30.0% | |
| TATAATGCCTTTCTCTGTAT+TGG | + | chr6_3:1983547-1983566 | None:intergenic | 30.0% | |
| TTATGCACAAACATATACCA+AGG | + | chr6_3:1983920-1983939 | None:intergenic | 30.0% | |
| !!! | CATTTGTCCTTGTTTTTGAT+TGG | - | chr6_3:1984018-1984037 | Msa0933510:intron | 30.0% |
| GTAACAACCAATCAAAAACA+AGG | + | chr6_3:1984028-1984047 | None:intergenic | 30.0% | |
| GTATTGCTTCAATATTTGCA+TGG | - | chr6_3:1984478-1984497 | Msa0933510:intron | 30.0% | |
| ! | AACTTTTCCTTTGTCAATTG+AGG | - | chr6_3:1984575-1984594 | Msa0933510:intron | 30.0% |
| GAAGATCACTTCTTAATCTA+TGG | + | chr6_3:1984703-1984722 | None:intergenic | 30.0% | |
| CAATAACAGATTCAGAAAAC+AGG | + | chr6_3:1984773-1984792 | None:intergenic | 30.0% | |
| !! | GGATTTTTCTAATAAGTTGG+AGG | - | chr6_3:1984845-1984864 | Msa0933510:intron | 30.0% |
| TGAAATGATTAAACATGGTG+GGG | + | chr6_3:1984957-1984976 | None:intergenic | 30.0% | |
| CATGATATGTCTGTTTATAG+TGG | - | chr6_3:1985239-1985258 | Msa0933510:intron | 30.0% | |
| ! | GTTTATAGTGGAAGTTAAAC+TGG | - | chr6_3:1985251-1985270 | Msa0933510:intron | 30.0% |
| AATGCTTTCCTAACATTCTA+GGG | + | chr6_3:1985588-1985607 | None:intergenic | 30.0% | |
| AAAAACAGACACTAAGAATG+GGG | + | chr6_3:1985674-1985693 | None:intergenic | 30.0% | |
| CAAAAACAGACACTAAGAAT+GGG | + | chr6_3:1985675-1985694 | None:intergenic | 30.0% | |
| ACAAAAACAGACACTAAGAA+TGG | + | chr6_3:1985676-1985695 | None:intergenic | 30.0% | |
| !!! | ATTCTTAGTGTCTGTTTTTG+TGG | - | chr6_3:1985675-1985694 | Msa0933510:intron | 30.0% |
| GTAGAAGTTTATCCAAACAT+AGG | - | chr6_3:1985744-1985763 | Msa0933510:CDS | 30.0% | |
| TGTGAAAAAAAAAACTGGAG+TGG | - | chr6_3:1985931-1985950 | Msa0933510:exon | 30.0% | |
| ! | TTGATGATTTAGTGCATGTT+TGG | - | chr6_3:1985996-1986015 | Msa0933510:five_prime_UTR | 30.0% |
| AATGGAAGAGAAGGTTGTTA+GGG | + | chr6_3:1978352-1978371 | None:intergenic | 35.0% | |
| ATGATGAAGAAGGAGTTGAA+TGG | + | chr6_3:1978370-1978389 | None:intergenic | 35.0% | |
| !! | ATTGGATTAGCGACATGAAT+GGG | + | chr6_3:1978497-1978516 | None:intergenic | 35.0% |
| TCTTAGGTGATGAAATGACA+AGG | - | chr6_3:1978616-1978635 | Msa0933510:three_prime_UTR | 35.0% | |
| ATGGAAGATGATCAAGGATA+AGG | - | chr6_3:1978644-1978663 | Msa0933510:three_prime_UTR | 35.0% | |
| GACACTCATAAGAAAACGAA+AGG | - | chr6_3:1978761-1978780 | Msa0933510:intron | 35.0% | |
| GCTCTGTTTGGTAAAATTAG+CGG | - | chr6_3:1978783-1978802 | Msa0933510:intron | 35.0% | |
| TTAAGATTGCAGGGGTAAAA+TGG | - | chr6_3:1978830-1978849 | Msa0933510:intron | 35.0% | |
| ! | ATTGAAGGCATGTTTATCGT+TGG | + | chr6_3:1979292-1979311 | None:intergenic | 35.0% |
| ACAATGACACCTTGAATTGA+AGG | + | chr6_3:1979307-1979326 | None:intergenic | 35.0% | |
| ! | GTTTTCATAAGCTATCTTGG+AGG | - | chr6_3:1979707-1979726 | Msa0933510:CDS | 35.0% |
| GCAAATTGCAAATAGTCTAC+TGG | + | chr6_3:1979855-1979874 | None:intergenic | 35.0% | |
| AAGTAAGGAAAGATAAGCTG+CGG | + | chr6_3:1979919-1979938 | None:intergenic | 35.0% | |
| GCTGAGAAAGTTAAATTGGA+AGG | - | chr6_3:1980130-1980149 | Msa0933510:intron | 35.0% | |
| ACTAACTAAGTGGCATTACT+TGG | + | chr6_3:1980241-1980260 | None:intergenic | 35.0% | |
| GACACAAACTAATTGCTTAC+TGG | - | chr6_3:1980279-1980298 | Msa0933510:intron | 35.0% | |
| ATAAGGTGAAAAACCCTAAC+AGG | + | chr6_3:1980310-1980329 | None:intergenic | 35.0% | |
| AACAGACATAAAGCTTGTCA+AGG | + | chr6_3:1980404-1980423 | None:intergenic | 35.0% | |
| ! | CTACTTAAGCTGCATTTTTG+TGG | - | chr6_3:1980428-1980447 | Msa0933510:intron | 35.0% |
| ACTACAACAAAATGTGCCAA+CGG | + | chr6_3:1980546-1980565 | None:intergenic | 35.0% | |
| CTCTACCAATGTTTGTTTCA+TGG | - | chr6_3:1980651-1980670 | Msa0933510:intron | 35.0% | |
| TCAGTCCAAATTCTTTGACT+CGG | + | chr6_3:1981305-1981324 | None:intergenic | 35.0% | |
| AATTTGGACTGAAGTCTATG+TGG | - | chr6_3:1981313-1981332 | Msa0933510:intron | 35.0% | |
| TGTTCCTTATTGTTCCATTG+GGG | + | chr6_3:1981344-1981363 | None:intergenic | 35.0% | |
| TAAACAAAACGACACACACA+GGG | + | chr6_3:1981538-1981557 | None:intergenic | 35.0% | |
| ATAAACAAAACGACACACAC+AGG | + | chr6_3:1981539-1981558 | None:intergenic | 35.0% | |
| ! | ACTTGGCTATCAATTAGCTT+GGG | + | chr6_3:1981694-1981713 | None:intergenic | 35.0% |
| TACTTGGCTATCAATTAGCT+TGG | + | chr6_3:1981695-1981714 | None:intergenic | 35.0% | |
| ACTAACTAAGTGGCATTACT+TGG | + | chr6_3:1980241-1980260 | None:intergenic | 35.0% | |
| AATGTCAGTCAAGGGAAAAA+AGG | - | chr6_3:1981907-1981926 | Msa0933510:intron | 35.0% | |
| ATGTCAGTCAAGGGAAAAAA+GGG | - | chr6_3:1981908-1981927 | Msa0933510:intron | 35.0% | |
| AAATCCCAATTGAAGAGTCA+GGG | - | chr6_3:1981931-1981950 | Msa0933510:intron | 35.0% | |
| AAAACCCTGACTCTTCAATT+GGG | + | chr6_3:1981938-1981957 | None:intergenic | 35.0% | |
| TAAAACCCTGACTCTTCAAT+TGG | + | chr6_3:1981939-1981958 | None:intergenic | 35.0% | |
| GCGGGATATTGAATTTATTC+CGG | - | chr6_3:1982132-1982151 | Msa0933510:intron | 35.0% | |
| GTAGTATATTGAGATCGCAT+GGG | + | chr6_3:1982197-1982216 | None:intergenic | 35.0% | |
| GGTATATTGCGGCATATTAT+GGG | + | chr6_3:1982369-1982388 | None:intergenic | 35.0% | |
| ! | TCCATTGATTACTGTATCAG+TGG | + | chr6_3:1982556-1982575 | None:intergenic | 35.0% |
| ATACAGTAATCAATGGACCA+GGG | - | chr6_3:1982559-1982578 | Msa0933510:intron | 35.0% | |
| TACATCAGAAAGCAGGTATT+CGG | + | chr6_3:1982616-1982635 | None:intergenic | 35.0% | |
| TTTCAACTACATCAGAAAGC+AGG | + | chr6_3:1982623-1982642 | None:intergenic | 35.0% | |
| ! | TTTTGTAAATGCCAGTGACA+TGG | + | chr6_3:1982938-1982957 | None:intergenic | 35.0% |
| CACTGGCATTTACAAAAAAG+TGG | - | chr6_3:1982941-1982960 | Msa0933510:intron | 35.0% | |
| !!! | TTTTTGGTGCTCAAGTAAAG+TGG | + | chr6_3:1982967-1982986 | None:intergenic | 35.0% |
| TTCTCAAGAAATATGATGGC+AGG | - | chr6_3:1982992-1983011 | Msa0933510:intron | 35.0% | |
| ! | AAGAGAAGTTTTGCATACGA+AGG | + | chr6_3:1983063-1983082 | None:intergenic | 35.0% |
| TTTAATTCAGACAGCGTTTC+AGG | - | chr6_3:1983081-1983100 | Msa0933510:intron | 35.0% | |
| TTCAGGAGGTTTATGAAGAA+AGG | - | chr6_3:1983147-1983166 | Msa0933510:intron | 35.0% | |
| CAAAGTGATTTACTTGCTCA+AGG | - | chr6_3:1983385-1983404 | Msa0933510:intron | 35.0% | |
| GTGTGCTCTGTTTATTATAG+AGG | - | chr6_3:1983645-1983664 | Msa0933510:intron | 35.0% | |
| ATATGGCACTTGAAACACTT+AGG | + | chr6_3:1983856-1983875 | None:intergenic | 35.0% | |
| ! | CTTTTGCATTACGTTTACCT+TGG | - | chr6_3:1983900-1983919 | Msa0933510:intron | 35.0% |
| ACACTTAACAGAAAGTTGCA+AGG | - | chr6_3:1983986-1984005 | Msa0933510:intron | 35.0% | |
| CCAGAAAAGACACATTGAAA+GGG | + | chr6_3:1984101-1984120 | None:intergenic | 35.0% | |
| ACCAGAAAAGACACATTGAA+AGG | + | chr6_3:1984102-1984121 | None:intergenic | 35.0% | |
| AATTTGCAGTTATCTTCCGA+CGG | - | chr6_3:1984369-1984388 | Msa0933510:intron | 35.0% | |
| ! | CATTTTCGGTTTCATCAAGA+GGG | - | chr6_3:1984435-1984454 | Msa0933510:intron | 35.0% |
| CATCTACATCAACTTTGACA+AGG | + | chr6_3:1984618-1984637 | None:intergenic | 35.0% | |
| GGAAGGATATTCACTTACTT+AGG | + | chr6_3:1984936-1984955 | None:intergenic | 35.0% | |
| TTACTATTTCATGACGTGTC+TGG | - | chr6_3:1985079-1985098 | Msa0933510:intron | 35.0% | |
| CTTTAGCCTGTTATTAAGCT+CGG | - | chr6_3:1985335-1985354 | Msa0933510:intron | 35.0% | |
| TTTAGCCTGTTATTAAGCTC+GGG | - | chr6_3:1985336-1985355 | Msa0933510:intron | 35.0% | |
| ! | TTTTGACATTGGATTTGTGC+AGG | - | chr6_3:1985425-1985444 | Msa0933510:intron | 35.0% |
| TTTGACATTGGATTTGTGCA+GGG | - | chr6_3:1985426-1985445 | Msa0933510:intron | 35.0% | |
| CAATGCTTTCCTAACATTCT+AGG | + | chr6_3:1985589-1985608 | None:intergenic | 35.0% | |
| !! | TTAGGAAAGCATTGAACAGA+GGG | - | chr6_3:1985595-1985614 | Msa0933510:intron | 35.0% |
| CCAAAGTCCCAAAGAATAAT+TGG | + | chr6_3:1985638-1985657 | None:intergenic | 35.0% | |
| !! | CCAATTATTCTTTGGGACTT+TGG | - | chr6_3:1985635-1985654 | Msa0933510:intron | 35.0% |
| AAATCACAGCCAACGTATAT+CGG | - | chr6_3:1985713-1985732 | Msa0933510:CDS | 35.0% | |
| ACAAATACAAATTGCACGTG+AGG | - | chr6_3:1985840-1985859 | Msa0933510:CDS | 35.0% | |
| CAAATACAAATTGCACGTGA+GGG | - | chr6_3:1985841-1985860 | Msa0933510:CDS | 35.0% | |
| GAATGGAAGAGAAGGTTGTT+AGG | + | chr6_3:1978353-1978372 | None:intergenic | 40.0% | |
| AAGGAGTTGAATGGAAGAGA+AGG | + | chr6_3:1978361-1978380 | None:intergenic | 40.0% | |
| ! | AGGAAGAGTGATGATGAAGA+AGG | + | chr6_3:1978380-1978399 | None:intergenic | 40.0% |
| !! | GATTGGATTAGCGACATGAA+TGG | + | chr6_3:1978498-1978517 | None:intergenic | 40.0% |
| AATCCAATCGTCGAAATGGA+CGG | - | chr6_3:1978509-1978528 | Msa0933510:three_prime_UTR | 40.0% | |
| ! | GAATTACGAAGAGTGTGAGA+TGG | + | chr6_3:1978556-1978575 | None:intergenic | 40.0% |
| AGAAAACGAAAGGCTCTGTT+TGG | - | chr6_3:1978771-1978790 | Msa0933510:intron | 40.0% | |
| CAAAAACCGCTATAAGCTCA+TGG | - | chr6_3:1978897-1978916 | Msa0933510:intron | 40.0% | |
| TCATTGTGTCAGTGCTACAT+AGG | - | chr6_3:1979320-1979339 | Msa0933510:CDS | 40.0% | |
| ! | GTCTACTGGCCTATTTAGAT+TGG | + | chr6_3:1979841-1979860 | None:intergenic | 40.0% |
| GCAGCTTATCTTTCCTTACT+TGG | - | chr6_3:1979918-1979937 | Msa0933510:intron | 40.0% | |
| GAAAATCACTCACTTGAGAG+TGG | + | chr6_3:1980025-1980044 | None:intergenic | 40.0% | |
| GAGGGGACCTAAAAAAAATG+TGG | - | chr6_3:1980500-1980519 | Msa0933510:intron | 40.0% | |
| !! | GTTGGCACATTTTGTTGTAG+TGG | - | chr6_3:1980545-1980564 | Msa0933510:intron | 40.0% |
| AAATGTGCAACCATAACTCC+CGG | - | chr6_3:1980887-1980906 | Msa0933510:CDS | 40.0% | |
| TAAAGCCCAGAACAACTTAC+CGG | + | chr6_3:1980909-1980928 | None:intergenic | 40.0% | |
| GTGCTATAACACTAGCATAG+CGG | - | chr6_3:1980950-1980969 | Msa0933510:intron | 40.0% | |
| CAGTCCAAATTCTTTGACTC+GGG | + | chr6_3:1981304-1981323 | None:intergenic | 40.0% | |
| !!! | TTCCCACACGTGTTTTTTTG+TGG | - | chr6_3:1981455-1981474 | Msa0933510:CDS | 40.0% |
| !!! | TCCCACACGTGTTTTTTTGT+GGG | - | chr6_3:1981456-1981475 | Msa0933510:CDS | 40.0% |
| ACCCACAAAAAAACACGTGT+GGG | + | chr6_3:1981460-1981479 | None:intergenic | 40.0% | |
| ! | CTTGGCTATCAATTAGCTTG+GGG | + | chr6_3:1981693-1981712 | None:intergenic | 40.0% |
| GGCACAAACTAATTGCTTAC+CGG | - | chr6_3:1981749-1981768 | Msa0933510:intron | 40.0% | |
| GCACAAACTAATTGCTTACC+GGG | - | chr6_3:1981750-1981769 | Msa0933510:intron | 40.0% | |
| CACAAACTAATTGCTTACCG+GGG | - | chr6_3:1981751-1981770 | Msa0933510:intron | 40.0% | |
| ACAAACTAATTGCTTACCGG+GGG | - | chr6_3:1981752-1981771 | Msa0933510:intron | 40.0% | |
| TCGGTTTACAATGTCAGTCA+AGG | - | chr6_3:1981898-1981917 | Msa0933510:intron | 40.0% | |
| CGGTTTACAATGTCAGTCAA+GGG | - | chr6_3:1981899-1981918 | Msa0933510:intron | 40.0% | |
| GAAATCCCAATTGAAGAGTC+AGG | - | chr6_3:1981930-1981949 | Msa0933510:intron | 40.0% | |
| TGACTTATTGCCAACTTTGC+TGG | - | chr6_3:1982072-1982091 | Msa0933510:intron | 40.0% | |
| ! | TTTTGAATGGCCAGCAAAGT+TGG | + | chr6_3:1982085-1982104 | None:intergenic | 40.0% |
| CGTAGTATATTGAGATCGCA+TGG | + | chr6_3:1982198-1982217 | None:intergenic | 40.0% | |
| GGGTATATTGCGGCATATTA+TGG | + | chr6_3:1982370-1982389 | None:intergenic | 40.0% | |
| GCATGCCTACCAATACAAAT+TGG | + | chr6_3:1982513-1982532 | None:intergenic | 40.0% | |
| !! | TGTATTGGTAGGCATGCTTT+TGG | - | chr6_3:1982516-1982535 | Msa0933510:intron | 40.0% |
| GCCACTGATACAGTAATCAA+TGG | - | chr6_3:1982552-1982571 | Msa0933510:intron | 40.0% | |
| GATACAGTAATCAATGGACC+AGG | - | chr6_3:1982558-1982577 | Msa0933510:intron | 40.0% | |
| TCTAATTCAGTCCCAGAAGA+CGG | - | chr6_3:1982707-1982726 | Msa0933510:intron | 40.0% | |
| TTATGAACATCAAGCTCCAC+TGG | + | chr6_3:1982740-1982759 | None:intergenic | 40.0% | |
| GTTCATAATTTCAAAGGCCC+TGG | - | chr6_3:1982752-1982771 | Msa0933510:intron | 40.0% | |
| CTCGAATTGACTGGCATATT+AGG | + | chr6_3:1982900-1982919 | None:intergenic | 40.0% | |
| AGGAGGTTTATGAAGAAAGG+TGG | - | chr6_3:1983150-1983169 | Msa0933510:intron | 40.0% | |
| AGGTTTATGAAGAAAGGTGG+CGG | - | chr6_3:1983153-1983172 | Msa0933510:intron | 40.0% | |
| GTTGACACTTGAGTAACTTC+AGG | - | chr6_3:1983269-1983288 | Msa0933510:intron | 40.0% | |
| ! | GCATAGGCTAATTGATGACA+TGG | - | chr6_3:1983297-1983316 | Msa0933510:intron | 40.0% |
| ! | TAGGCTAATTGATGACATGG+TGG | - | chr6_3:1983300-1983319 | Msa0933510:intron | 40.0% |
| GCATATGCACTCAAAAGTGA+AGG | - | chr6_3:1983322-1983341 | Msa0933510:intron | 40.0% | |
| TATGCACTCAAAAGTGAAGG+TGG | - | chr6_3:1983325-1983344 | Msa0933510:intron | 40.0% | |
| ATGCACTCAAAAGTGAAGGT+GGG | - | chr6_3:1983326-1983345 | Msa0933510:intron | 40.0% | |
| TGGGCTTGCAAGAATTATGA+TGG | - | chr6_3:1983355-1983374 | Msa0933510:intron | 40.0% | |
| GACTGGTAAGATCCAATTCT+TGG | - | chr6_3:1983491-1983510 | Msa0933510:intron | 40.0% | |
| ATATCCTTGTCCAAGCGATT+TGG | - | chr6_3:1983564-1983583 | Msa0933510:intron | 40.0% | |
| ATAAACAGAGCACACTCATC+TGG | + | chr6_3:1983640-1983659 | None:intergenic | 40.0% | |
| TAACAGAAAGTTGCAAGGCA+AGG | - | chr6_3:1983991-1984010 | Msa0933510:intron | 40.0% | |
| AACAGAAAGTTGCAAGGCAA+GGG | - | chr6_3:1983992-1984011 | Msa0933510:intron | 40.0% | |
| ! | CCCTTTCAATGTGTCTTTTC+TGG | - | chr6_3:1984098-1984117 | Msa0933510:intron | 40.0% |
| !! | TCAATGTGTCTTTTCTGGTG+TGG | - | chr6_3:1984103-1984122 | Msa0933510:intron | 40.0% |
| ! | TCTGAAATCTGAATGTGTGC+AGG | - | chr6_3:1984206-1984225 | Msa0933510:CDS | 40.0% |
| ATCTGAATGTGTGCAGGATT+CGG | - | chr6_3:1984212-1984231 | Msa0933510:CDS | 40.0% | |
| ! | GAACTGTAACTCGGCATTTT+CGG | - | chr6_3:1984421-1984440 | Msa0933510:intron | 40.0% |
| ! | GCATTTTCGGTTTCATCAAG+AGG | - | chr6_3:1984434-1984453 | Msa0933510:intron | 40.0% |
| TGAAGCAATACTGTTCGTAC+TGG | + | chr6_3:1984469-1984488 | None:intergenic | 40.0% | |
| TCAATATTTGCATGGACACG+AGG | - | chr6_3:1984486-1984505 | Msa0933510:intron | 40.0% | |
| GAAAACAGGGAGAAGAAGAA+AGG | + | chr6_3:1984759-1984778 | None:intergenic | 40.0% | |
| ! | ATTTTTATCCAGCTTGGCTC+TGG | + | chr6_3:1984814-1984833 | None:intergenic | 40.0% |
| AATCAGAAGGGCAAGATCTT+TGG | + | chr6_3:1984907-1984926 | None:intergenic | 40.0% | |
| ATCTTGCCCTTCTGATTCAT+GGG | - | chr6_3:1984910-1984929 | Msa0933510:intron | 40.0% | |
| ! | ATGATTAAACATGGTGGGGA+AGG | + | chr6_3:1984953-1984972 | None:intergenic | 40.0% |
| CGAAGCAGGATACAAGAATT+AGG | + | chr6_3:1985036-1985055 | None:intergenic | 40.0% | |
| ACGAATAATTGCTTCGAAGC+AGG | + | chr6_3:1985050-1985069 | None:intergenic | 40.0% | |
| !! | GTGGAAGTTAAACTGGTTTG+TGG | - | chr6_3:1985258-1985277 | Msa0933510:intron | 40.0% |
| GGTGTTCAAGTAATATTCCC+TGG | + | chr6_3:1985455-1985474 | None:intergenic | 40.0% | |
| GGAATATTACTTGAACACCG+AGG | - | chr6_3:1985456-1985475 | Msa0933510:intron | 40.0% | |
| !! | CACAGCATCGATAAATTCCT+CGG | + | chr6_3:1985476-1985495 | None:intergenic | 40.0% |
| CATACATGTTAGACTGTTGC+AGG | + | chr6_3:1985529-1985548 | None:intergenic | 40.0% | |
| CTGCAACAGTCTAACATGTA+TGG | - | chr6_3:1985527-1985546 | Msa0933510:intron | 40.0% | |
| AATCCTAGCCCTAGAATGTT+AGG | - | chr6_3:1985577-1985596 | Msa0933510:CDS | 40.0% | |
| !! | TTTCCTAACATTCTAGGGCT+AGG | + | chr6_3:1985583-1985602 | None:intergenic | 40.0% |
| !! | GTTAGGAAAGCATTGAACAG+AGG | - | chr6_3:1985594-1985613 | Msa0933510:intron | 40.0% |
| !! | TAGGAAAGCATTGAACAGAG+GGG | - | chr6_3:1985596-1985615 | Msa0933510:intron | 40.0% |
| AATCACAGCCAACGTATATC+GGG | - | chr6_3:1985714-1985733 | Msa0933510:CDS | 40.0% | |
| ! | CAGTAGTGTTAGCCTATGTT+TGG | + | chr6_3:1985759-1985778 | None:intergenic | 40.0% |
| ! | AGATAGCATTGTGAGAGTGC+TGG | + | chr6_3:1978312-1978331 | None:intergenic | 45.0% |
| !! | AGAAGAAGCGAAGCATCGAA+GGG | + | chr6_3:1978465-1978484 | None:intergenic | 45.0% |
| !! | AAGAAGAAGCGAAGCATCGA+AGG | + | chr6_3:1978466-1978485 | None:intergenic | 45.0% |
| CGCTAATCCAATCGTCGAAA+TGG | - | chr6_3:1978505-1978524 | Msa0933510:three_prime_UTR | 45.0% | |
| TTACCGTCCATTTCGACGAT+TGG | + | chr6_3:1978515-1978534 | None:intergenic | 45.0% | |
| CTTACTGGGAGAACCTGTTA+GGG | - | chr6_3:1980294-1980313 | Msa0933510:intron | 45.0% | |
| AAGCTTGTCAAGGACCCTAA+AGG | + | chr6_3:1980394-1980413 | None:intergenic | 45.0% | |
| ! | AGGTCCCCTCTTTTCGTAAA+TGG | + | chr6_3:1980490-1980509 | None:intergenic | 45.0% |
| GTTTGTATCGTGCAATCCGT+TGG | - | chr6_3:1980527-1980546 | Msa0933510:intron | 45.0% | |
| GCAGGATAAGAAACTCTCCA+AGG | + | chr6_3:1980763-1980782 | None:intergenic | 45.0% | |
| AACGAGGGAATGACAGCAAA+GGG | + | chr6_3:1980787-1980806 | None:intergenic | 45.0% | |
| GAACAACTTACCGGGAGTTA+TGG | + | chr6_3:1980900-1980919 | None:intergenic | 45.0% | |
| TAACTCCCGGTAAGTTGTTC+TGG | - | chr6_3:1980900-1980919 | Msa0933510:CDS | 45.0% | |
| AACTCCCGGTAAGTTGTTCT+GGG | - | chr6_3:1980901-1980920 | Msa0933510:CDS | 45.0% | |
| AAAGCCCAGAACAACTTACC+GGG | + | chr6_3:1980908-1980927 | None:intergenic | 45.0% | |
| ! | GAACAGACTTCTGTTTTCCG+CGG | - | chr6_3:1981075-1981094 | Msa0933510:intron | 45.0% |
| TCTACATAGTGCATGGCAAG+TGG | - | chr6_3:1981195-1981214 | Msa0933510:intron | 45.0% | |
| CTACATAGTGCATGGCAAGT+GGG | - | chr6_3:1981196-1981215 | Msa0933510:intron | 45.0% | |
| GAGACCCGAGTCAAAGAATT+TGG | - | chr6_3:1981297-1981316 | Msa0933510:intron | 45.0% | |
| GAAGCCCCAATGGAACAATA+AGG | - | chr6_3:1981337-1981356 | Msa0933510:intron | 45.0% | |
| CACCCACAAAAAAACACGTG+TGG | + | chr6_3:1981461-1981480 | None:intergenic | 45.0% | |
| AACATGGATGAGGGGAAATG+CGG | - | chr6_3:1982113-1982132 | Msa0933510:intron | 45.0% | |
| GGTTCACGAAATACAGTACC+TGG | + | chr6_3:1982348-1982367 | None:intergenic | 45.0% | |
| AATACCAGCTTAAGCTTCCC+TGG | + | chr6_3:1982579-1982598 | None:intergenic | 45.0% | |
| GGGAAGCTTAAGCTGGTATT+TGG | - | chr6_3:1982579-1982598 | Msa0933510:intron | 45.0% | |
| ACATAGCAAGAGCTACACCA+GGG | + | chr6_3:1982772-1982791 | None:intergenic | 45.0% | |
| TACATAGCAAGAGCTACACC+AGG | + | chr6_3:1982773-1982792 | None:intergenic | 45.0% | |
| CAGCAAATGCTCGAATTGAC+TGG | + | chr6_3:1982909-1982928 | None:intergenic | 45.0% | |
| TGCTGAATCATCCATGTCAC+TGG | - | chr6_3:1982924-1982943 | Msa0933510:intron | 45.0% | |
| GTAACTTCAGGTACGAGCAT+AGG | - | chr6_3:1983281-1983300 | Msa0933510:intron | 45.0% | |
| AAAGTGAAGGTGGGTATGTC+TGG | - | chr6_3:1983335-1983354 | Msa0933510:intron | 45.0% | |
| AAGTGAAGGTGGGTATGTCT+GGG | - | chr6_3:1983336-1983355 | Msa0933510:intron | 45.0% | |
| TTGACCACTTTCCATGGCTT+GGG | + | chr6_3:1983518-1983537 | None:intergenic | 45.0% | |
| ATTGACCACTTTCCATGGCT+TGG | + | chr6_3:1983519-1983538 | None:intergenic | 45.0% | |
| AAGGGCTAATCGACTACATG+AGG | + | chr6_3:1984083-1984102 | None:intergenic | 45.0% | |
| CAGCTCATGGAACTGTAACT+CGG | - | chr6_3:1984412-1984431 | Msa0933510:intron | 45.0% | |
| GATCTTGCCCTTCTGATTCA+TGG | - | chr6_3:1984909-1984928 | Msa0933510:intron | 45.0% | |
| CTTAGGCCCATGAATCAGAA+GGG | + | chr6_3:1984919-1984938 | None:intergenic | 45.0% | |
| ACTTAGGCCCATGAATCAGA+AGG | + | chr6_3:1984920-1984939 | None:intergenic | 45.0% | |
| TGTTATTAAGCTCGGGCAGA+GGG | - | chr6_3:1985343-1985362 | Msa0933510:intron | 45.0% | |
| CGAGGAATTTATCGATGCTG+TGG | - | chr6_3:1985474-1985493 | Msa0933510:intron | 45.0% | |
| ACACTAAGAATGGGGAAGCA+GGG | + | chr6_3:1985666-1985685 | None:intergenic | 45.0% | |
| AAAAAAACTGGAGTGGCAGC+TGG | - | chr6_3:1985938-1985957 | Msa0933510:exon | 45.0% | |
| AGATCGGTGCATGATGAGGA+AGG | + | chr6_3:1978400-1978419 | None:intergenic | 50.0% | |
| AGAGAGATCGGTGCATGATG+AGG | + | chr6_3:1978404-1978423 | None:intergenic | 50.0% | |
| !! | AAGAAGCGAAGCATCGAAGG+GGG | + | chr6_3:1978463-1978482 | None:intergenic | 50.0% |
| !! | GAAGAAGCGAAGCATCGAAG+GGG | + | chr6_3:1978464-1978483 | None:intergenic | 50.0% |
| ! | CTCGTCAGTGTCGAACTGTT+TGG | - | chr6_3:1979578-1979597 | Msa0933510:intron | 50.0% |
| GCTTACTGGGAGAACCTGTT+AGG | - | chr6_3:1980293-1980312 | Msa0933510:intron | 50.0% | |
| ACGAGGGAATGACAGCAAAG+GGG | + | chr6_3:1980786-1980805 | None:intergenic | 50.0% | |
| GAACGAGGGAATGACAGCAA+AGG | + | chr6_3:1980788-1980807 | None:intergenic | 50.0% | |
| CTGTCAAATAGCAGCTGCAG+TGG | - | chr6_3:1981021-1981040 | Msa0933510:CDS | 50.0% | |
| GTGTTGTCAATAGCGAACCG+CGG | + | chr6_3:1981095-1981114 | None:intergenic | 50.0% | |
| TCTATGTGGAGAAGCCCCAA+TGG | - | chr6_3:1981327-1981346 | Msa0933510:intron | 50.0% | |
| AAAACACCAACAGGTTCCCC+CGG | + | chr6_3:1981771-1981790 | None:intergenic | 50.0% | |
| ACATGGATGAGGGGAAATGC+GGG | - | chr6_3:1982114-1982133 | Msa0933510:intron | 50.0% | |
| ! | CATGGCTTGGGTCCAAGAAT+TGG | + | chr6_3:1983506-1983525 | None:intergenic | 50.0% |
| CAATTCTTGGACCCAAGCCA+TGG | - | chr6_3:1983504-1983523 | Msa0933510:intron | 50.0% | |
| ! | CTTGTCCAAGCGATTTGGCT+CGG | - | chr6_3:1983569-1983588 | Msa0933510:intron | 50.0% |
| GGCTAATCGACTACATGAGG+TGG | + | chr6_3:1984080-1984099 | None:intergenic | 50.0% | |
| TGTGCAGGATTCGGCTCATT+GGG | - | chr6_3:1984221-1984240 | Msa0933510:CDS | 50.0% | |
| GGCTTCTAATGTCTTGCCGT+CGG | + | chr6_3:1984388-1984407 | None:intergenic | 50.0% | |
| TACAGTTCCATGAGCTGCCT+CGG | + | chr6_3:1984409-1984428 | None:intergenic | 50.0% | |
| ATTTGCATGGACACGAGGAC+TGG | - | chr6_3:1984491-1984510 | Msa0933510:intron | 50.0% | |
| GTTATGTACCAGAGCCAAGC+TGG | - | chr6_3:1984803-1984822 | Msa0933510:intron | 50.0% | |
| TGTGTTGAGACAGTGGAGTC+AGG | - | chr6_3:1984873-1984892 | Msa0933510:intron | 50.0% | |
| CTCTGCCCGAGCTTAATAAC+AGG | + | chr6_3:1985344-1985363 | None:intergenic | 50.0% | |
| CTGTTATTAAGCTCGGGCAG+AGG | - | chr6_3:1985342-1985361 | Msa0933510:intron | 50.0% | |
| GTTAGACTGTTGCAGGCTCT+CGG | + | chr6_3:1985522-1985541 | None:intergenic | 50.0% | |
| CACTAAGAATGGGGAAGCAG+GGG | + | chr6_3:1985665-1985684 | None:intergenic | 50.0% | |
| GACACTAAGAATGGGGAAGC+AGG | + | chr6_3:1985667-1985686 | None:intergenic | 50.0% | |
| CACATCGTCCCGATATACGT+TGG | + | chr6_3:1985725-1985744 | None:intergenic | 50.0% | |
| GGCTAACACTACTGCAGTAG+AGG | - | chr6_3:1985765-1985784 | Msa0933510:CDS | 50.0% | |
| CGAGGGAATGACAGCAAAGG+GGG | + | chr6_3:1980785-1980804 | None:intergenic | 55.0% | |
| TGGACCAGGGAAGCTTAAGC+TGG | - | chr6_3:1982572-1982591 | Msa0933510:intron | 55.0% | |
| TGGACCCAAGCCATGGAAAG+TGG | - | chr6_3:1983511-1983530 | Msa0933510:intron | 55.0% | |
| CGAGCCAAATCGCTTGGACA+AGG | + | chr6_3:1983571-1983590 | None:intergenic | 55.0% | |
| GTGTGCAGGATTCGGCTCAT+TGG | - | chr6_3:1984220-1984239 | Msa0933510:CDS | 55.0% | |
| GGGTCTCATGACTTCTGTGC+TGG | - | chr6_3:1984241-1984260 | Msa0933510:CDS | 55.0% | |
| CGGCAAGACATTAGAAGCCG+AGG | - | chr6_3:1984389-1984408 | Msa0933510:intron | 55.0% | |
| TTAGAAGCCGAGGCAGCTCA+TGG | - | chr6_3:1984399-1984418 | Msa0933510:intron | 55.0% | |
| GGACACGAGGACTGGAACAT+AGG | - | chr6_3:1984499-1984518 | Msa0933510:intron | 55.0% | |
| GGCTGCATGTGTTGAGACAG+TGG | - | chr6_3:1984866-1984885 | Msa0933510:intron | 55.0% | |
| ! | TGGATTTGTGCAGGGTGTCC+AGG | - | chr6_3:1985434-1985453 | Msa0933510:intron | 55.0% |
| ! | GGATTTGTGCAGGGTGTCCA+GGG | - | chr6_3:1985435-1985454 | Msa0933510:intron | 55.0% |
| AACTGGAGTGGCAGCTGGAA+TGG | - | chr6_3:1985943-1985962 | Msa0933510:five_prime_UTR | 55.0% | |
| GGAATGACAGCAAAGGGGGC+AGG | + | chr6_3:1980781-1980800 | None:intergenic | 60.0% | |
| TGCTTACCGGGGGAACCTGT+TGG | - | chr6_3:1981762-1981781 | Msa0933510:intron | 60.0% | |
| !! | TCCAAGCGATTTGGCTCGGC+TGG | - | chr6_3:1983573-1983592 | Msa0933510:intron | 60.0% |
| ACCAGCCGAGCCAAATCGCT+TGG | + | chr6_3:1983577-1983596 | None:intergenic | 60.0% | |
| !! | CTGGAGCGTCGCCGTCTTCT+GGG | + | chr6_3:1982721-1982740 | None:intergenic | 65.0% |
| !! | ACTGGAGCGTCGCCGTCTTC+TGG | + | chr6_3:1982722-1982741 | None:intergenic | 65.0% |
| AGAAGACGGCGACGCTCCAG+TGG | - | chr6_3:1982721-1982740 | Msa0933510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 1978189 | 1986029 | 1978189 | ID=Msa0933510;Name=Msa0933510 |
| chr6_3 | mRNA | 1978189 | 1986029 | 1978189 | ID=Msa0933510-mRNA-1;Parent=Msa0933510;Name=Msa0933510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=89|0.85|0.93|0.93|1|1|15|489|479 |
| chr6_3 | exon | 1978189 | 1978771 | 1978189 | ID=Msa0933510-mRNA-1:exon:806;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1979281 | 1979403 | 1979281 | ID=Msa0933510-mRNA-1:exon:805;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1979698 | 1979840 | 1979698 | ID=Msa0933510-mRNA-1:exon:804;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1979956 | 1979990 | 1979956 | ID=Msa0933510-mRNA-1:exon:803;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1980812 | 1980927 | 1980812 | ID=Msa0933510-mRNA-1:exon:802;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1981017 | 1981085 | 1981017 | ID=Msa0933510-mRNA-1:exon:801;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1981205 | 1981308 | 1981205 | ID=Msa0933510-mRNA-1:exon:800;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1981413 | 1981501 | 1981413 | ID=Msa0933510-mRNA-1:exon:799;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1981618 | 1981719 | 1981618 | ID=Msa0933510-mRNA-1:exon:798;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1981816 | 1981869 | 1981816 | ID=Msa0933510-mRNA-1:exon:797;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1982846 | 1982923 | 1982846 | ID=Msa0933510-mRNA-1:exon:796;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1984057 | 1984082 | 1984057 | ID=Msa0933510-mRNA-1:exon:795;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1984187 | 1984296 | 1984187 | ID=Msa0933510-mRNA-1:exon:794;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1985553 | 1985596 | 1985553 | ID=Msa0933510-mRNA-1:exon:793;Parent=Msa0933510-mRNA-1 |
| chr6_3 | exon | 1985688 | 1986029 | 1985688 | ID=Msa0933510-mRNA-1:exon:792;Parent=Msa0933510-mRNA-1 |
| chr6_3 | five_prime_UTR | 1985941 | 1986029 | 1985941 | ID=Msa0933510-mRNA-1:five_prime_utr;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1985688 | 1985940 | 1985688 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1985553 | 1985596 | 1985553 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1984187 | 1984296 | 1984187 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1984057 | 1984082 | 1984057 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1982846 | 1982923 | 1982846 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1981816 | 1981869 | 1981816 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1981618 | 1981719 | 1981618 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1981413 | 1981501 | 1981413 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1981205 | 1981308 | 1981205 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1981017 | 1981085 | 1981017 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1980812 | 1980927 | 1980812 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1979956 | 1979990 | 1979956 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1979698 | 1979840 | 1979698 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1979281 | 1979403 | 1979281 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | CDS | 1978678 | 1978771 | 1978678 | ID=Msa0933510-mRNA-1:cds;Parent=Msa0933510-mRNA-1 |
| chr6_3 | three_prime_UTR | 1978189 | 1978677 | 1978189 | ID=Msa0933510-mRNA-1:three_prime_utr;Parent=Msa0933510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
