Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933830 | XP_013451466.1 | 96.698 | 212 | 7 | 0 | 1 | 212 | 146 | 357 | 4.92e-150 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933830 | sp|Q0JKZ0|SNL6_ORYSJ | 49.315 | 219 | 105 | 4 | 1 | 213 | 155 | 373 | 2.29e-65 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933830 | A0A072U6Q4 | 96.698 | 212 | 7 | 0 | 1 | 212 | 146 | 357 | 2.35e-150 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0659790 | Msa0933830 | 0.825374 | 4.854261e-54 | -8.615850e-47 |
| Msa0569780 | Msa0933830 | 0.807342 | 5.297304e-50 | -8.615850e-47 |
| Msa0933830 | Msa1462470 | 0.821530 | 3.844595e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933830 | MtrunA17_Chr6g0450211 | 96.698 | 212 | 7 | 0 | 1 | 212 | 146 | 357 | 4.52e-154 | 431 |
| Msa0933830 | MtrunA17_Chr5g0411071 | 32.057 | 209 | 123 | 5 | 1 | 203 | 98 | 293 | 2.75e-36 | 129 |
| Msa0933830 | MtrunA17_Chr2g0333781 | 36.408 | 206 | 121 | 5 | 1 | 202 | 106 | 305 | 3.32e-22 | 92.4 |
| Msa0933830 | MtrunA17_Chr4g0001321 | 34.466 | 206 | 125 | 5 | 1 | 202 | 103 | 302 | 5.58e-22 | 91.7 |
| Msa0933830 | MtrunA17_Chr5g0423551 | 34.839 | 155 | 90 | 6 | 9 | 159 | 104 | 251 | 1.89e-21 | 90.1 |
| Msa0933830 | MtrunA17_Chr3g0077221 | 31.765 | 170 | 103 | 6 | 9 | 173 | 109 | 270 | 1.35e-20 | 87.8 |
| Msa0933830 | MtrunA17_Chr2g0331211 | 31.220 | 205 | 126 | 7 | 1 | 199 | 97 | 292 | 1.51e-20 | 87.8 |
| Msa0933830 | MtrunA17_Chr3g0077231 | 32.948 | 173 | 103 | 6 | 6 | 173 | 102 | 266 | 2.36e-20 | 87.0 |
| Msa0933830 | MtrunA17_Chr5g0431311 | 34.337 | 166 | 100 | 5 | 9 | 171 | 105 | 264 | 2.21e-19 | 84.3 |
| Msa0933830 | MtrunA17_Chr4g0002661 | 34.118 | 170 | 103 | 4 | 3 | 169 | 106 | 269 | 4.62e-19 | 83.6 |
| Msa0933830 | MtrunA17_Chr7g0245741 | 30.128 | 156 | 96 | 4 | 6 | 155 | 105 | 253 | 2.19e-18 | 81.6 |
| Msa0933830 | MtrunA17_Chr8g0363831 | 30.723 | 166 | 109 | 4 | 9 | 173 | 108 | 268 | 2.40e-17 | 79.0 |
| Msa0933830 | MtrunA17_Chr4g0039321 | 29.442 | 197 | 119 | 10 | 11 | 198 | 110 | 295 | 1.01e-16 | 77.0 |
| Msa0933830 | MtrunA17_Chr4g0039311 | 28.643 | 199 | 128 | 8 | 6 | 198 | 107 | 297 | 3.56e-16 | 75.9 |
| Msa0933830 | MtrunA17_Chr4g0048961 | 32.298 | 161 | 86 | 6 | 11 | 155 | 114 | 267 | 3.97e-16 | 75.5 |
| Msa0933830 | MtrunA17_Chr7g0245711 | 29.139 | 151 | 94 | 4 | 11 | 155 | 72 | 215 | 4.58e-16 | 75.1 |
| Msa0933830 | MtrunA17_Chr7g0245731 | 29.139 | 151 | 94 | 4 | 11 | 155 | 160 | 303 | 1.41e-15 | 74.3 |
| Msa0933830 | MtrunA17_Chr3g0106111 | 31.875 | 160 | 100 | 5 | 3 | 159 | 99 | 252 | 2.54e-15 | 73.2 |
| Msa0933830 | MtrunA17_Chr2g0291541 | 31.694 | 183 | 99 | 8 | 1 | 171 | 103 | 271 | 7.41e-15 | 72.0 |
| Msa0933830 | MtrunA17_Chr8g0364051 | 29.121 | 182 | 113 | 7 | 9 | 183 | 107 | 279 | 8.04e-15 | 72.0 |
| Msa0933830 | MtrunA17_Chr1g0155431 | 31.169 | 154 | 88 | 8 | 11 | 155 | 109 | 253 | 4.63e-14 | 69.7 |
| Msa0933830 | MtrunA17_Chr3g0080551 | 35.484 | 93 | 57 | 2 | 9 | 100 | 21 | 111 | 6.02e-13 | 63.5 |
| Msa0933830 | MtrunA17_Chr4g0002961 | 32.941 | 170 | 105 | 4 | 3 | 169 | 106 | 269 | 8.67e-13 | 66.2 |
| Msa0933830 | MtrunA17_Chr1g0155411 | 30.189 | 159 | 93 | 7 | 6 | 155 | 104 | 253 | 1.67e-12 | 65.5 |
| Msa0933830 | MtrunA17_Chr7g0245641 | 29.677 | 155 | 90 | 6 | 11 | 155 | 148 | 293 | 1.82e-12 | 65.5 |
| Msa0933830 | MtrunA17_Chr4g0042101 | 28.049 | 164 | 94 | 6 | 9 | 155 | 127 | 283 | 9.40e-12 | 63.2 |
| Msa0933830 | MtrunA17_Chr7g0245691 | 28.571 | 154 | 94 | 5 | 11 | 155 | 111 | 257 | 2.69e-11 | 62.0 |
| Msa0933830 | MtrunA17_Chr7g0245671 | 28.846 | 156 | 91 | 7 | 11 | 155 | 110 | 256 | 9.19e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933830 | AT5G14700.1 | 57.078 | 219 | 86 | 4 | 1 | 212 | 150 | 367 | 9.24e-84 | 253 |
| Msa0933830 | AT5G14700.2 | 65.546 | 119 | 41 | 0 | 1 | 119 | 150 | 268 | 2.28e-51 | 168 |
| Msa0933830 | AT2G23910.4 | 38.679 | 212 | 118 | 4 | 3 | 209 | 66 | 270 | 1.66e-46 | 155 |
| Msa0933830 | AT2G23910.1 | 38.679 | 212 | 118 | 4 | 3 | 209 | 100 | 304 | 7.00e-46 | 154 |
| Msa0933830 | AT4G30470.1 | 39.151 | 212 | 117 | 4 | 3 | 209 | 99 | 303 | 1.07e-45 | 154 |
| Msa0933830 | AT2G23910.2 | 42.442 | 172 | 94 | 2 | 3 | 174 | 100 | 266 | 2.02e-45 | 152 |
| Msa0933830 | AT2G23910.3 | 42.442 | 172 | 94 | 2 | 3 | 174 | 100 | 266 | 2.57e-45 | 152 |
| Msa0933830 | AT4G35420.1 | 35.625 | 160 | 92 | 5 | 9 | 163 | 107 | 260 | 1.02e-25 | 102 |
| Msa0933830 | AT1G09510.1 | 38.312 | 154 | 83 | 4 | 6 | 154 | 104 | 250 | 1.17e-23 | 96.7 |
| Msa0933830 | AT5G19440.1 | 35.149 | 202 | 111 | 8 | 6 | 198 | 106 | 296 | 3.07e-23 | 95.5 |
| Msa0933830 | AT1G51410.1 | 34.653 | 202 | 112 | 9 | 6 | 198 | 105 | 295 | 8.03e-23 | 94.4 |
| Msa0933830 | AT1G15950.7 | 34.450 | 209 | 121 | 6 | 1 | 202 | 1 | 200 | 5.00e-22 | 90.9 |
| Msa0933830 | AT1G15950.2 | 34.450 | 209 | 121 | 6 | 1 | 202 | 99 | 298 | 1.57e-21 | 90.9 |
| Msa0933830 | AT1G15950.3 | 34.450 | 209 | 121 | 6 | 1 | 202 | 99 | 298 | 2.19e-21 | 90.5 |
| Msa0933830 | AT1G15950.1 | 34.450 | 209 | 121 | 6 | 1 | 202 | 99 | 298 | 2.19e-21 | 90.5 |
| Msa0933830 | AT1G80820.1 | 33.645 | 214 | 130 | 7 | 1 | 208 | 94 | 301 | 1.08e-20 | 88.6 |
| Msa0933830 | AT1G68540.1 | 35.897 | 156 | 89 | 6 | 9 | 159 | 104 | 253 | 7.79e-20 | 86.3 |
| Msa0933830 | AT1G15950.5 | 36.723 | 177 | 97 | 5 | 1 | 171 | 99 | 266 | 8.08e-20 | 85.5 |
| Msa0933830 | AT1G15950.6 | 36.723 | 177 | 97 | 5 | 1 | 171 | 99 | 266 | 8.17e-20 | 85.5 |
| Msa0933830 | AT1G15950.4 | 36.723 | 177 | 97 | 5 | 1 | 171 | 99 | 266 | 9.88e-20 | 85.5 |
| Msa0933830 | AT1G80820.2 | 36.782 | 174 | 101 | 5 | 1 | 171 | 94 | 261 | 1.83e-19 | 84.3 |
| Msa0933830 | AT5G58490.1 | 33.333 | 180 | 104 | 6 | 6 | 177 | 106 | 277 | 2.33e-19 | 84.7 |
| Msa0933830 | AT1G09480.2 | 33.987 | 153 | 85 | 6 | 9 | 154 | 107 | 250 | 1.25e-18 | 82.8 |
| Msa0933830 | AT1G09480.1 | 33.987 | 153 | 85 | 6 | 9 | 154 | 154 | 297 | 1.53e-18 | 83.2 |
| Msa0933830 | AT2G02400.1 | 33.129 | 163 | 98 | 6 | 1 | 159 | 96 | 251 | 2.40e-18 | 82.0 |
| Msa0933830 | AT1G68540.2 | 34.868 | 152 | 88 | 6 | 13 | 159 | 1 | 146 | 2.44e-18 | 80.1 |
| Msa0933830 | AT1G09500.2 | 33.766 | 154 | 90 | 4 | 6 | 154 | 71 | 217 | 6.15e-18 | 80.5 |
| Msa0933830 | AT1G09500.3 | 33.766 | 154 | 90 | 4 | 6 | 154 | 105 | 251 | 8.96e-18 | 79.7 |
| Msa0933830 | AT1G09500.1 | 33.766 | 154 | 90 | 4 | 6 | 154 | 105 | 251 | 1.55e-17 | 79.7 |
| Msa0933830 | AT2G33590.1 | 31.628 | 215 | 118 | 9 | 6 | 207 | 105 | 303 | 2.27e-17 | 79.3 |
| Msa0933830 | AT1G25460.1 | 32.278 | 158 | 98 | 5 | 6 | 159 | 99 | 251 | 1.23e-16 | 77.4 |
| Msa0933830 | AT2G33600.1 | 30.994 | 171 | 101 | 5 | 46 | 207 | 141 | 303 | 2.50e-15 | 73.6 |
| Msa0933830 | AT1G66800.1 | 30.387 | 181 | 107 | 6 | 1 | 173 | 99 | 268 | 3.40e-15 | 73.2 |
| Msa0933830 | AT1G09490.2 | 31.373 | 153 | 89 | 6 | 9 | 154 | 76 | 219 | 9.10e-15 | 71.6 |
| Msa0933830 | AT1G61720.1 | 32.919 | 161 | 85 | 6 | 11 | 155 | 113 | 266 | 1.56e-14 | 71.6 |
| Msa0933830 | AT1G09490.1 | 31.373 | 153 | 89 | 6 | 9 | 154 | 107 | 250 | 1.99e-14 | 71.2 |
| Msa0933830 | AT5G42800.1 | 30.189 | 159 | 93 | 7 | 6 | 155 | 104 | 253 | 1.44e-12 | 66.2 |
Find 50 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATTAGCTGCTTGTATT+TGG | 0.194540 | 6_3:-2739969 | Msa0933830:CDS |
| AATAAAGATATAAAGATAAT+TGG | 0.261104 | 6_3:+2738675 | None:intergenic |
| ATTTGGCATTTCTTTGTCTT+AGG | 0.298324 | 6_3:-2738799 | Msa0933830:three_prime_UTR |
| TACTCACTAAAGCACCTAAT+TGG | 0.309558 | 6_3:+2738865 | None:intergenic |
| CATGAGCCATGGTTAATAAT+AGG | 0.320121 | 6_3:+2739916 | None:intergenic |
| TGGAGAATAGCCAAAGAAAA+AGG | 0.322575 | 6_3:-2739511 | Msa0933830:CDS |
| GAGAAGCTAGCAAAGGATAT+TGG | 0.331332 | 6_3:-2738982 | Msa0933830:CDS |
| GTGCTTTAGTGAGTATTAGA+TGG | 0.336507 | 6_3:-2738857 | Msa0933830:exon |
| ATGCCTTATGTCGTAAGATT+TGG | 0.353834 | 6_3:-2738816 | Msa0933830:three_prime_UTR |
| GGGTTCCTATGACAAAATTC+AGG | 0.360299 | 6_3:+2739448 | None:intergenic |
| ATCACTCTGCATAGACAAAA+AGG | 0.372903 | 6_3:-2739884 | Msa0933830:intron |
| AATATGTAGTTTGTTTAGTA+AGG | 0.393784 | 6_3:-2738716 | Msa0933830:three_prime_UTR |
| AAAATAGATGAGGTATGCTT+AGG | 0.398195 | 6_3:-2738767 | Msa0933830:three_prime_UTR |
| AAATAGATGAGGTATGCTTA+GGG | 0.398846 | 6_3:-2738766 | Msa0933830:three_prime_UTR |
| GACTCATGTCTAGGCCAATT+AGG | 0.409683 | 6_3:-2738879 | Msa0933830:CDS |
| ATGCCAAATCTTACGACATA+AGG | 0.444610 | 6_3:+2738813 | None:intergenic |
| GAAATGAAAGAAAATGCTTA+TGG | 0.447338 | 6_3:-2739051 | Msa0933830:CDS |
| AGCTCATGCATGTGTGTTCA+AGG | 0.459174 | 6_3:-2739073 | Msa0933830:CDS |
| GGTAAGCAATTGTTGCTGTT+GGG | 0.473684 | 6_3:+2739428 | None:intergenic |
| TGGCAGCTATGGTATGCATT+AGG | 0.477270 | 6_3:-2739559 | Msa0933830:intron |
| TGAGGGCTGAAAAGGCTGCT+TGG | 0.484203 | 6_3:-2739531 | Msa0933830:CDS |
| AGGTAAGCAATTGTTGCTGT+TGG | 0.485134 | 6_3:+2739427 | None:intergenic |
| AGGCAAGATGAGGGCTGAAA+AGG | 0.486804 | 6_3:-2739539 | Msa0933830:CDS |
| AGATGGAAATCATGAAATCA+TGG | 0.486897 | 6_3:-2738840 | Msa0933830:three_prime_UTR |
| TTATAATATATAGAAATCAA+TGG | 0.492063 | 6_3:-2740073 | Msa0933830:exon |
| TCAGGACCTGTGATAAGTGC+TGG | 0.495879 | 6_3:+2739466 | None:intergenic |
| AACAGTTGATGTAAAGAAAG+TGG | 0.500773 | 6_3:-2739100 | Msa0933830:CDS |
| TTGGTTACATAGTACCTTTG+AGG | 0.509131 | 6_3:+2739407 | None:intergenic |
| TGCCTAAAGAAAAGATATGT+GGG | 0.511259 | 6_3:-2738957 | Msa0933830:CDS |
| ATGCCTAAAGAAAAGATATG+TGG | 0.515158 | 6_3:-2738958 | Msa0933830:CDS |
| TGTGATAAGTGCTGGACAAA+TGG | 0.525063 | 6_3:+2739474 | None:intergenic |
| CTATTATTAACCATGGCTCA+TGG | 0.530599 | 6_3:-2739915 | Msa0933830:CDS |
| GGTTAATAATAGGAGTAGTA+AGG | 0.539956 | 6_3:+2739926 | None:intergenic |
| GCAACAATTGCTTACCTCAA+AGG | 0.544142 | 6_3:-2739421 | Msa0933830:intron |
| ATATTATACTCCCTCCGTCC+CGG | 0.552488 | 6_3:+2740135 | None:intergenic |
| GTCAGTTATTCCGGGACGGA+GGG | 0.558569 | 6_3:-2740145 | None:intergenic |
| TGAAGCAGAGAAGCTAGCAA+AGG | 0.583651 | 6_3:-2738989 | Msa0933830:CDS |
| AGTTATGCAGACTCATGTCT+AGG | 0.584860 | 6_3:-2738888 | Msa0933830:CDS |
| GGTCAGTTATTCCGGGACGG+AGG | 0.593751 | 6_3:-2740146 | None:intergenic |
| ATTTGTCCAGCACTTATCAC+AGG | 0.608102 | 6_3:-2739472 | Msa0933830:CDS |
| CAATGTAACTGAGAATGTGA+TGG | 0.623543 | 6_3:-2740037 | Msa0933830:CDS |
| GGTATGCATTAGGCAAGATG+AGG | 0.624697 | 6_3:-2739549 | Msa0933830:CDS |
| GTATGCATTAGGCAAGATGA+GGG | 0.629882 | 6_3:-2739548 | Msa0933830:CDS |
| ACTACTCCTATTATTAACCA+TGG | 0.632241 | 6_3:-2739922 | Msa0933830:CDS |
| ATGGGTCAGTTATTCCGGGA+CGG | 0.635699 | 6_3:-2740149 | None:intergenic |
| ATTCACTACTCCATGAGCCA+TGG | 0.641184 | 6_3:+2739905 | None:intergenic |
| ATGCTTAGGGGTCTATGATG+TGG | 0.662252 | 6_3:-2738753 | Msa0933830:three_prime_UTR |
| GCCTAAAGAAAAGATATGTG+GGG | 0.665039 | 6_3:-2738956 | Msa0933830:CDS |
| GAGTTGATAGAAAATAGATG+AGG | 0.674106 | 6_3:-2738777 | Msa0933830:three_prime_UTR |
| AATAGATGAGGTATGCTTAG+GGG | 0.689213 | 6_3:-2738765 | Msa0933830:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATATATAGAAATCAA+TGG | - | chr6_3:2738716-2738735 | Msa0933830:three_prime_UTR | 10.0% |
| !! | AATAAAGATATAAAGATAAT+TGG | + | chr6_3:2740117-2740136 | None:intergenic | 10.0% |
| !!! | CAATTTTGTTAAAAATAAAA+CGG | - | chr6_3:2740137-2740156 | Msa0933830:five_prime_UTR | 10.0% |
| !! | TTATAATATATAGAAATCAA+TGG | - | chr6_3:2738716-2738735 | Msa0933830:three_prime_UTR | 10.0% |
| !! | AATAAAGATATAAAGATAAT+TGG | + | chr6_3:2740117-2740136 | None:intergenic | 10.0% |
| !!! | AAATATTGTTTTTGATGATA+TGG | - | chr6_3:2739210-2739229 | Msa0933830:intron | 15.0% |
| !! | ATGTAAACAAAAACAAAAAT+TGG | + | chr6_3:2739430-2739449 | None:intergenic | 15.0% |
| !!! | CTTCTTAAAATTTGTTTATT+AGG | - | chr6_3:2739467-2739486 | Msa0933830:CDS | 15.0% |
| !!! | AAATATTGTTTTTGATGATA+TGG | - | chr6_3:2739210-2739229 | Msa0933830:intron | 15.0% |
| !! | ATGTAAACAAAAACAAAAAT+TGG | + | chr6_3:2739430-2739449 | None:intergenic | 15.0% |
| !!! | CTTCTTAAAATTTGTTTATT+AGG | - | chr6_3:2739467-2739486 | Msa0933830:CDS | 15.0% |
| !!! | TCATTTAGAACATTTTATGT+AGG | - | chr6_3:2738967-2738986 | Msa0933830:CDS | 20.0% |
| !! | AATCAAACCAATCTATAAAT+TGG | + | chr6_3:2739085-2739104 | None:intergenic | 20.0% |
| !!! | ACAATTTAAAATGCAAATAC+AGG | - | chr6_3:2739633-2739652 | Msa0933830:intron | 20.0% |
| !!! | AATATGTAGTTTGTTTAGTA+AGG | - | chr6_3:2740073-2740092 | Msa0933830:exon | 20.0% |
| !!! | TCATTTAGAACATTTTATGT+AGG | - | chr6_3:2738967-2738986 | Msa0933830:CDS | 20.0% |
| !! | AATCAAACCAATCTATAAAT+TGG | + | chr6_3:2739085-2739104 | None:intergenic | 20.0% |
| !!! | ACAATTTAAAATGCAAATAC+AGG | - | chr6_3:2739633-2739652 | Msa0933830:intron | 20.0% |
| !!! | AATATGTAGTTTGTTTAGTA+AGG | - | chr6_3:2740073-2740092 | Msa0933830:exon | 20.0% |
| !!! | AACACACATCTTTTAATTGA+AGG | + | chr6_3:2738795-2738814 | None:intergenic | 25.0% |
| ! | AAATCGACCAATTTATAGAT+TGG | - | chr6_3:2739075-2739094 | Msa0933830:CDS | 25.0% |
| ! | GTTGAATTAGACGAAAAATA+AGG | + | chr6_3:2739116-2739135 | None:intergenic | 25.0% |
| ! | CAAAAATTGGAACAAGAAAT+TGG | + | chr6_3:2739417-2739436 | None:intergenic | 25.0% |
| ! | TCACAAAAAATGTACTCAAA+TGG | - | chr6_3:2739657-2739676 | Msa0933830:intron | 25.0% |
| ! | GAAATGAAAGAAAATGCTTA+TGG | - | chr6_3:2739738-2739757 | Msa0933830:intron | 25.0% |
| !!! | AACACACATCTTTTAATTGA+AGG | + | chr6_3:2738795-2738814 | None:intergenic | 25.0% |
| ! | AAATCGACCAATTTATAGAT+TGG | - | chr6_3:2739075-2739094 | Msa0933830:CDS | 25.0% |
| ! | GTTGAATTAGACGAAAAATA+AGG | + | chr6_3:2739116-2739135 | None:intergenic | 25.0% |
| ! | CAAAAATTGGAACAAGAAAT+TGG | + | chr6_3:2739417-2739436 | None:intergenic | 25.0% |
| ! | TCACAAAAAATGTACTCAAA+TGG | - | chr6_3:2739657-2739676 | Msa0933830:intron | 25.0% |
| ! | GAAATGAAAGAAAATGCTTA+TGG | - | chr6_3:2739738-2739757 | Msa0933830:intron | 25.0% |
| GGTTAATAATAGGAGTAGTA+AGG | + | chr6_3:2738866-2738885 | None:intergenic | 30.0% | |
| ACTACTCCTATTATTAACCA+TGG | - | chr6_3:2738867-2738886 | Msa0933830:CDS | 30.0% | |
| !!! | TTTTTAAAACTAGACCGAAC+CGG | - | chr6_3:2739030-2739049 | Msa0933830:CDS | 30.0% |
| TGGTTCAATCAGTTTAACTA+TGG | + | chr6_3:2739138-2739157 | None:intergenic | 30.0% | |
| ! | GAGTTTCAAACCTTTTTCTT+TGG | + | chr6_3:2739291-2739310 | None:intergenic | 30.0% |
| AAGAAATTGGACAATGACTT+TGG | + | chr6_3:2739404-2739423 | None:intergenic | 30.0% | |
| CTCTAGATGAAAGTTTACAT+TGG | - | chr6_3:2739590-2739609 | Msa0933830:intron | 30.0% | |
| ! | AACAGTTGATGTAAAGAAAG+TGG | - | chr6_3:2739689-2739708 | Msa0933830:intron | 30.0% |
| ATGCCTAAAGAAAAGATATG+TGG | - | chr6_3:2739831-2739850 | Msa0933830:intron | 30.0% | |
| TGCCTAAAGAAAAGATATGT+GGG | - | chr6_3:2739832-2739851 | Msa0933830:intron | 30.0% | |
| AGATGGAAATCATGAAATCA+TGG | - | chr6_3:2739949-2739968 | Msa0933830:CDS | 30.0% | |
| ATTTGGCATTTCTTTGTCTT+AGG | - | chr6_3:2739990-2740009 | Msa0933830:CDS | 30.0% | |
| !! | GAGTTGATAGAAAATAGATG+AGG | - | chr6_3:2740012-2740031 | Msa0933830:CDS | 30.0% |
| AAAATAGATGAGGTATGCTT+AGG | - | chr6_3:2740022-2740041 | Msa0933830:CDS | 30.0% | |
| AAATAGATGAGGTATGCTTA+GGG | - | chr6_3:2740023-2740042 | Msa0933830:CDS | 30.0% | |
| GGTTAATAATAGGAGTAGTA+AGG | + | chr6_3:2738866-2738885 | None:intergenic | 30.0% | |
| ACTACTCCTATTATTAACCA+TGG | - | chr6_3:2738867-2738886 | Msa0933830:CDS | 30.0% | |
| !!! | TTTTTAAAACTAGACCGAAC+CGG | - | chr6_3:2739030-2739049 | Msa0933830:CDS | 30.0% |
| TGGTTCAATCAGTTTAACTA+TGG | + | chr6_3:2739138-2739157 | None:intergenic | 30.0% | |
| ! | GAGTTTCAAACCTTTTTCTT+TGG | + | chr6_3:2739291-2739310 | None:intergenic | 30.0% |
| AAGAAATTGGACAATGACTT+TGG | + | chr6_3:2739404-2739423 | None:intergenic | 30.0% | |
| CTCTAGATGAAAGTTTACAT+TGG | - | chr6_3:2739590-2739609 | Msa0933830:intron | 30.0% | |
| ! | AACAGTTGATGTAAAGAAAG+TGG | - | chr6_3:2739689-2739708 | Msa0933830:intron | 30.0% |
| ATGCCTAAAGAAAAGATATG+TGG | - | chr6_3:2739831-2739850 | Msa0933830:intron | 30.0% | |
| TGCCTAAAGAAAAGATATGT+GGG | - | chr6_3:2739832-2739851 | Msa0933830:intron | 30.0% | |
| AGATGGAAATCATGAAATCA+TGG | - | chr6_3:2739949-2739968 | Msa0933830:CDS | 30.0% | |
| ATTTGGCATTTCTTTGTCTT+AGG | - | chr6_3:2739990-2740009 | Msa0933830:CDS | 30.0% | |
| !! | GAGTTGATAGAAAATAGATG+AGG | - | chr6_3:2740012-2740031 | Msa0933830:CDS | 30.0% |
| AAAATAGATGAGGTATGCTT+AGG | - | chr6_3:2740022-2740041 | Msa0933830:CDS | 30.0% | |
| AAATAGATGAGGTATGCTTA+GGG | - | chr6_3:2740023-2740042 | Msa0933830:CDS | 30.0% | |
| CAATGTAACTGAGAATGTGA+TGG | - | chr6_3:2738752-2738771 | Msa0933830:three_prime_UTR | 35.0% | |
| CATCATTAGCTGCTTGTATT+TGG | - | chr6_3:2738820-2738839 | Msa0933830:three_prime_UTR | 35.0% | |
| CATGAGCCATGGTTAATAAT+AGG | + | chr6_3:2738876-2738895 | None:intergenic | 35.0% | |
| CTATTATTAACCATGGCTCA+TGG | - | chr6_3:2738874-2738893 | Msa0933830:CDS | 35.0% | |
| ATCACTCTGCATAGACAAAA+AGG | - | chr6_3:2738905-2738924 | Msa0933830:CDS | 35.0% | |
| CCTTCAAATCACGCTTTAAT+TGG | + | chr6_3:2739158-2739177 | None:intergenic | 35.0% | |
| CCAATTAAAGCGTGATTTGA+AGG | - | chr6_3:2739155-2739174 | Msa0933830:intron | 35.0% | |
| ATTTGAAGGTCTCACCAATT+CGG | - | chr6_3:2739169-2739188 | Msa0933830:intron | 35.0% | |
| !! | TTTTGATGATATGGCAGCTA+TGG | - | chr6_3:2739219-2739238 | Msa0933830:intron | 35.0% |
| TGGAGAATAGCCAAAGAAAA+AGG | - | chr6_3:2739278-2739297 | Msa0933830:intron | 35.0% | |
| TTGGTTACATAGTACCTTTG+AGG | + | chr6_3:2739385-2739404 | None:intergenic | 35.0% | |
| GCCTAAAGAAAAGATATGTG+GGG | - | chr6_3:2739833-2739852 | Msa0933830:intron | 35.0% | |
| ! | TCCCCACATATCTTTTCTTT+AGG | + | chr6_3:2739837-2739856 | None:intergenic | 35.0% |
| ! | TACTCACTAAAGCACCTAAT+TGG | + | chr6_3:2739927-2739946 | None:intergenic | 35.0% |
| GTGCTTTAGTGAGTATTAGA+TGG | - | chr6_3:2739932-2739951 | Msa0933830:CDS | 35.0% | |
| ATGCCTTATGTCGTAAGATT+TGG | - | chr6_3:2739973-2739992 | Msa0933830:CDS | 35.0% | |
| ATGCCAAATCTTACGACATA+AGG | + | chr6_3:2739979-2739998 | None:intergenic | 35.0% | |
| AATAGATGAGGTATGCTTAG+GGG | - | chr6_3:2740024-2740043 | Msa0933830:CDS | 35.0% | |
| CAATGTAACTGAGAATGTGA+TGG | - | chr6_3:2738752-2738771 | Msa0933830:three_prime_UTR | 35.0% | |
| CATCATTAGCTGCTTGTATT+TGG | - | chr6_3:2738820-2738839 | Msa0933830:three_prime_UTR | 35.0% | |
| CATGAGCCATGGTTAATAAT+AGG | + | chr6_3:2738876-2738895 | None:intergenic | 35.0% | |
| CTATTATTAACCATGGCTCA+TGG | - | chr6_3:2738874-2738893 | Msa0933830:CDS | 35.0% | |
| ATCACTCTGCATAGACAAAA+AGG | - | chr6_3:2738905-2738924 | Msa0933830:CDS | 35.0% | |
| CCTTCAAATCACGCTTTAAT+TGG | + | chr6_3:2739158-2739177 | None:intergenic | 35.0% | |
| CCAATTAAAGCGTGATTTGA+AGG | - | chr6_3:2739155-2739174 | Msa0933830:intron | 35.0% | |
| ATTTGAAGGTCTCACCAATT+CGG | - | chr6_3:2739169-2739188 | Msa0933830:intron | 35.0% | |
| !! | TTTTGATGATATGGCAGCTA+TGG | - | chr6_3:2739219-2739238 | Msa0933830:intron | 35.0% |
| TGGAGAATAGCCAAAGAAAA+AGG | - | chr6_3:2739278-2739297 | Msa0933830:intron | 35.0% | |
| TTGGTTACATAGTACCTTTG+AGG | + | chr6_3:2739385-2739404 | None:intergenic | 35.0% | |
| GCCTAAAGAAAAGATATGTG+GGG | - | chr6_3:2739833-2739852 | Msa0933830:intron | 35.0% | |
| ! | TCCCCACATATCTTTTCTTT+AGG | + | chr6_3:2739837-2739856 | None:intergenic | 35.0% |
| ! | TACTCACTAAAGCACCTAAT+TGG | + | chr6_3:2739927-2739946 | None:intergenic | 35.0% |
| GTGCTTTAGTGAGTATTAGA+TGG | - | chr6_3:2739932-2739951 | Msa0933830:CDS | 35.0% | |
| ATGCCTTATGTCGTAAGATT+TGG | - | chr6_3:2739973-2739992 | Msa0933830:CDS | 35.0% | |
| ATGCCAAATCTTACGACATA+AGG | + | chr6_3:2739979-2739998 | None:intergenic | 35.0% | |
| AATAGATGAGGTATGCTTAG+GGG | - | chr6_3:2740024-2740043 | Msa0933830:CDS | 35.0% | |
| AATCAGATCCACTACCGAAT+TGG | + | chr6_3:2739186-2739205 | None:intergenic | 40.0% | |
| GTATGCATTAGGCAAGATGA+GGG | - | chr6_3:2739241-2739260 | Msa0933830:intron | 40.0% | |
| !! | TGTGATAAGTGCTGGACAAA+TGG | + | chr6_3:2739318-2739337 | None:intergenic | 40.0% |
| ATTTGTCCAGCACTTATCAC+AGG | - | chr6_3:2739317-2739336 | Msa0933830:intron | 40.0% | |
| ! | CAGGTCCTGAATTTTGTCAT+AGG | - | chr6_3:2739336-2739355 | Msa0933830:intron | 40.0% |
| GGGTTCCTATGACAAAATTC+AGG | + | chr6_3:2739344-2739363 | None:intergenic | 40.0% | |
| ! | GGTAAGCAATTGTTGCTGTT+GGG | + | chr6_3:2739364-2739383 | None:intergenic | 40.0% |
| AGGTAAGCAATTGTTGCTGT+TGG | + | chr6_3:2739365-2739384 | None:intergenic | 40.0% | |
| GCAACAATTGCTTACCTCAA+AGG | - | chr6_3:2739368-2739387 | Msa0933830:intron | 40.0% | |
| GAGAAGCTAGCAAAGGATAT+TGG | - | chr6_3:2739807-2739826 | Msa0933830:intron | 40.0% | |
| AGTTATGCAGACTCATGTCT+AGG | - | chr6_3:2739901-2739920 | Msa0933830:CDS | 40.0% | |
| AATCAGATCCACTACCGAAT+TGG | + | chr6_3:2739186-2739205 | None:intergenic | 40.0% | |
| GTATGCATTAGGCAAGATGA+GGG | - | chr6_3:2739241-2739260 | Msa0933830:intron | 40.0% | |
| !! | TGTGATAAGTGCTGGACAAA+TGG | + | chr6_3:2739318-2739337 | None:intergenic | 40.0% |
| ATTTGTCCAGCACTTATCAC+AGG | - | chr6_3:2739317-2739336 | Msa0933830:intron | 40.0% | |
| ! | CAGGTCCTGAATTTTGTCAT+AGG | - | chr6_3:2739336-2739355 | Msa0933830:intron | 40.0% |
| GGGTTCCTATGACAAAATTC+AGG | + | chr6_3:2739344-2739363 | None:intergenic | 40.0% | |
| ! | GGTAAGCAATTGTTGCTGTT+GGG | + | chr6_3:2739364-2739383 | None:intergenic | 40.0% |
| AGGTAAGCAATTGTTGCTGT+TGG | + | chr6_3:2739365-2739384 | None:intergenic | 40.0% | |
| GCAACAATTGCTTACCTCAA+AGG | - | chr6_3:2739368-2739387 | Msa0933830:intron | 40.0% | |
| GAGAAGCTAGCAAAGGATAT+TGG | - | chr6_3:2739807-2739826 | Msa0933830:intron | 40.0% | |
| AGTTATGCAGACTCATGTCT+AGG | - | chr6_3:2739901-2739920 | Msa0933830:CDS | 40.0% | |
| ATTCACTACTCCATGAGCCA+TGG | + | chr6_3:2738887-2738906 | None:intergenic | 45.0% | |
| TAAAACTAGACCGAACCGGT+CGG | - | chr6_3:2739034-2739053 | Msa0933830:CDS | 45.0% | |
| ACTCAACTAGTTGAACCGAC+CGG | + | chr6_3:2739052-2739071 | None:intergenic | 45.0% | |
| ! | GTCGGTTCAACTAGTTGAGT+TGG | - | chr6_3:2739052-2739071 | Msa0933830:CDS | 45.0% |
| TGGCAGCTATGGTATGCATT+AGG | - | chr6_3:2739230-2739249 | Msa0933830:intron | 45.0% | |
| GGTATGCATTAGGCAAGATG+AGG | - | chr6_3:2739240-2739259 | Msa0933830:intron | 45.0% | |
| AGCTCATGCATGTGTGTTCA+AGG | - | chr6_3:2739716-2739735 | Msa0933830:intron | 45.0% | |
| TGAAGCAGAGAAGCTAGCAA+AGG | - | chr6_3:2739800-2739819 | Msa0933830:intron | 45.0% | |
| GACTCATGTCTAGGCCAATT+AGG | - | chr6_3:2739910-2739929 | Msa0933830:CDS | 45.0% | |
| ATGCTTAGGGGTCTATGATG+TGG | - | chr6_3:2740036-2740055 | Msa0933830:CDS | 45.0% | |
| ATTCACTACTCCATGAGCCA+TGG | + | chr6_3:2738887-2738906 | None:intergenic | 45.0% | |
| TAAAACTAGACCGAACCGGT+CGG | - | chr6_3:2739034-2739053 | Msa0933830:CDS | 45.0% | |
| ACTCAACTAGTTGAACCGAC+CGG | + | chr6_3:2739052-2739071 | None:intergenic | 45.0% | |
| ! | GTCGGTTCAACTAGTTGAGT+TGG | - | chr6_3:2739052-2739071 | Msa0933830:CDS | 45.0% |
| TGGCAGCTATGGTATGCATT+AGG | - | chr6_3:2739230-2739249 | Msa0933830:intron | 45.0% | |
| GGTATGCATTAGGCAAGATG+AGG | - | chr6_3:2739240-2739259 | Msa0933830:intron | 45.0% | |
| AGCTCATGCATGTGTGTTCA+AGG | - | chr6_3:2739716-2739735 | Msa0933830:intron | 45.0% | |
| TGAAGCAGAGAAGCTAGCAA+AGG | - | chr6_3:2739800-2739819 | Msa0933830:intron | 45.0% | |
| GACTCATGTCTAGGCCAATT+AGG | - | chr6_3:2739910-2739929 | Msa0933830:CDS | 45.0% | |
| ATGCTTAGGGGTCTATGATG+TGG | - | chr6_3:2740036-2740055 | Msa0933830:CDS | 45.0% | |
| !!! | AAATATTGATTAAATTATTA+AGG | + | chr6_3:2739013-2739032 | None:intergenic | 5.0% |
| !!! | AAATATTGATTAAATTATTA+AGG | + | chr6_3:2739013-2739032 | None:intergenic | 5.0% |
| ACTAGTTGAACCGACCGGTT+CGG | + | chr6_3:2739047-2739066 | None:intergenic | 50.0% | |
| AGGTCTCACCAATTCGGTAG+TGG | - | chr6_3:2739175-2739194 | Msa0933830:intron | 50.0% | |
| AGGCAAGATGAGGGCTGAAA+AGG | - | chr6_3:2739250-2739269 | Msa0933830:intron | 50.0% | |
| TCAGGACCTGTGATAAGTGC+TGG | + | chr6_3:2739326-2739345 | None:intergenic | 50.0% | |
| ACTAGTTGAACCGACCGGTT+CGG | + | chr6_3:2739047-2739066 | None:intergenic | 50.0% | |
| AGGTCTCACCAATTCGGTAG+TGG | - | chr6_3:2739175-2739194 | Msa0933830:intron | 50.0% | |
| AGGCAAGATGAGGGCTGAAA+AGG | - | chr6_3:2739250-2739269 | Msa0933830:intron | 50.0% | |
| TCAGGACCTGTGATAAGTGC+TGG | + | chr6_3:2739326-2739345 | None:intergenic | 50.0% | |
| TGAGGGCTGAAAAGGCTGCT+TGG | - | chr6_3:2739258-2739277 | Msa0933830:intron | 55.0% | |
| TGAGGGCTGAAAAGGCTGCT+TGG | - | chr6_3:2739258-2739277 | Msa0933830:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 2738655 | 2740156 | 2738655 | ID=Msa0933830;Name=Msa0933830 |
| chr6_3 | mRNA | 2738655 | 2740156 | 2738655 | ID=Msa0933830-mRNA-1;Parent=Msa0933830;Name=Msa0933830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80|1|1|1|1|1|3|206|213 |
| chr6_3 | exon | 2738655 | 2739156 | 2738655 | ID=Msa0933830-mRNA-1:exon:998;Parent=Msa0933830-mRNA-1 |
| chr6_3 | exon | 2739422 | 2739575 | 2739422 | ID=Msa0933830-mRNA-1:exon:997;Parent=Msa0933830-mRNA-1 |
| chr6_3 | exon | 2739885 | 2740156 | 2739885 | ID=Msa0933830-mRNA-1:exon:996;Parent=Msa0933830-mRNA-1 |
| chr6_3 | five_prime_UTR | 2740077 | 2740156 | 2740077 | ID=Msa0933830-mRNA-1:five_prime_utr;Parent=Msa0933830-mRNA-1 |
| chr6_3 | CDS | 2739885 | 2740076 | 2739885 | ID=Msa0933830-mRNA-1:cds;Parent=Msa0933830-mRNA-1 |
| chr6_3 | CDS | 2739422 | 2739575 | 2739422 | ID=Msa0933830-mRNA-1:cds;Parent=Msa0933830-mRNA-1 |
| chr6_3 | CDS | 2738861 | 2739156 | 2738861 | ID=Msa0933830-mRNA-1:cds;Parent=Msa0933830-mRNA-1 |
| chr6_3 | three_prime_UTR | 2738655 | 2738860 | 2738655 | ID=Msa0933830-mRNA-1:three_prime_utr;Parent=Msa0933830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
