AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934960


Find 636 sgRNAs with CRISPR-Local

Find 1178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr6_3 gene 5225147 5239426 5225147 ID=Msa0934960;Name=Msa0934960
chr6_3 mRNA 5225147 5239426 5225147 ID=Msa0934960-mRNA-1;Parent=Msa0934960;Name=Msa0934960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=168|1|1|1|1|1|10|965|2166
chr6_3 exon 5225147 5225817 5225147 ID=Msa0934960-mRNA-1:exon:1594;Parent=Msa0934960-mRNA-1
chr6_3 exon 5229360 5230020 5229360 ID=Msa0934960-mRNA-1:exon:1595;Parent=Msa0934960-mRNA-1
chr6_3 exon 5230159 5231274 5230159 ID=Msa0934960-mRNA-1:exon:1596;Parent=Msa0934960-mRNA-1
chr6_3 exon 5231398 5231994 5231398 ID=Msa0934960-mRNA-1:exon:1597;Parent=Msa0934960-mRNA-1
chr6_3 exon 5232712 5233017 5232712 ID=Msa0934960-mRNA-1:exon:1598;Parent=Msa0934960-mRNA-1
chr6_3 exon 5233624 5233956 5233624 ID=Msa0934960-mRNA-1:exon:1599;Parent=Msa0934960-mRNA-1
chr6_3 exon 5234287 5234385 5234287 ID=Msa0934960-mRNA-1:exon:1600;Parent=Msa0934960-mRNA-1
chr6_3 exon 5234469 5234903 5234469 ID=Msa0934960-mRNA-1:exon:1601;Parent=Msa0934960-mRNA-1
chr6_3 exon 5235702 5237855 5235702 ID=Msa0934960-mRNA-1:exon:1602;Parent=Msa0934960-mRNA-1
chr6_3 exon 5238165 5239426 5238165 ID=Msa0934960-mRNA-1:exon:1603;Parent=Msa0934960-mRNA-1
chr6_3 five_prime_UTR 5225147 5225314 5225147 ID=Msa0934960-mRNA-1:five_prime_utr;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5225315 5225817 5225315 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5229360 5230020 5229360 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5230159 5231274 5230159 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5231398 5231994 5231398 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5232712 5233017 5232712 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5233624 5233956 5233624 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5234287 5234385 5234287 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5234469 5234903 5234469 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5235702 5237855 5235702 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 CDS 5238165 5238461 5238165 ID=Msa0934960-mRNA-1:cds;Parent=Msa0934960-mRNA-1
chr6_3 three_prime_UTR 5238462 5239426 5238462 ID=Msa0934960-mRNA-1:three_prime_utr;Parent=Msa0934960-mRNA-1
Gene Sequence

>Msa0934960

ATGATCATGGCGGAACTAACCGATTCCACCGCCGCCGGTAACAACCTTCCGCCGCCGCAACAACCACCTCATCAAATTGACACGCGTTCAATCCTCTGCATCGACCTTAACGAGATCCCTTCACCTTCACCTTCTTCTTCCTTCGTTGAAACCCTACCTGACTTCACCGTCGACATCGTTCGTACTTATCACGAGAATCCCGCTCCTCCTCCCGGTGGTCCTGCGCCTCTTCCCGGCGGTGTCACTTCCTGCGCTGTTTGTTCTAAGTCCGGCGCCGGTGGTTTGGTGTGTGATGGATGTGAACGGAGTTTTCATTTGGCGTGTGCTGGAGTTCGTGGTGGAAGAATTGGAGCGGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGCGGGGGGTGTGAAAAGTAAAAGATGGCCGTTGGGTGTGAAGAGTAAACAGTTGCTAGATATTAATGCTTCCCCGCCTAGTGATGTTGATGGGGAAGAGTTGCATGAATCGAGAAAGCACGCTATGGGTGATAAATCTTTTGCTGCCAATCAATTTGGTGCTTCAGTGACATATTCAACCTTCAATAACGGGAGTGTGGTTGGCTTCCAAAGGGCATCTGGAGCTGTGACACGTCCTGTTAGAGTGGGTTTTGAGGATATATTGAATCACACCCAATCAATGGCTAGAAGCTTTGAGGAAGTACCATCTCAGACTCAAGGTCCAAATGAGTTAATTTTGCAGGCTCTTAGAGATTTTATATCTGAAAGGCATGGTGTACTGGTGGAAGGTTGGCGAGTAGATCTTAGACCATCAATGATCGGCTCTGACATGTATGCAGTTTACTGTGCACCTGATGGAAAGATATTCGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTCTATGGAATCTGAAGTAAGAAATGAAACGTCTCTTTCTTCTGGTGGGCCTCACCTATCCAGAAAAAGAAAGTCTTCTAGAACTCCGGCAGCCAATGGTTTTGCAGAAAAGCAGGGAACCTTTGTCAATAGTAATTATAAGGATTGTTCTTCTGATGGTTTAAGCATGGAACATGTGAATGCTCAGGGAACCGCCCTAAAAGCCACTGAGATTAGAAGAAAAGAGAATGGTCACTCCGACCCTCATCAATTTGCTGACGAACTTCCTCTGCAGTTTAAGGACTTCTCTGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCTGTGGGTTATAAATCTTGTTGGCATGATAAGATTACTGGCTCTCTGTTTACGTGCGAAGTTTTGGATGGGGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCGGAATTTCCTATTCCAGATGGGTCAACCATCCTTTCAATGCACAATCATTGTCAATTTATGAGCCAAACCAATGAAGGTCAGAGAGAGACTAATGATAGTATGGATTTAGACGGTGATGAGAGTATCCAGATGATGCTTTTAGAACCTTGTGCACCAACAGAAGATGACATCTTGAGTTGTGTTGTCAATTGCTCAAGTGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCAATTCAATATAATACTGGATACTCATTTTCTGATACTATGAATTTTTGTGATGAAATTGGTCAAATTTTGGTGGAAGAGCGGTCCCCATTCTCAGCATGGAGAGTTATTTCCCAAAAGTTGGTCAATGCTTGCAAGGATATCTGCAAGAAGAACGGAACTTTTAAATTCTATTGTAAACATGTTGAAAGTGAAATGGGCTTACATAGATGGGATTTAAGGAATAGCGAAAATGATACCCACTTCACTTCGTTGGATAAATTTTGTGGTTCACCTGGATCTGTCAGCATTCCAGACACAATTTATGCAGACAGTGACGTGAAAGACCTGTATGAGCTCTTAGAGAAGTGGTTGGAGCAGGATAGATTTGGACTAGATGCTGAATTTGTCCAAGAAATTTTGGAACCGCTTCTTGGTGTGCAAGACTGTTTGCAGTATGAACGTCTTAGTAGTAGAAACAATAGCTCTTCATTGCCAACAGTGGAAAACGGTTACCTAGTGGTCGATCGTAAAGGTCAATCTAAATATCAGGATGAAGTAATTCAAGGTTTATATAGAAGGCCTAAGAAGGCAAGATTGACCGAGTACGTTAAGGAAAACCGATGTCCACCTCCTGGGAAACCACTGTGCTCCAGAGCTCCTACTGAACTCATTGGTGACATTTTTCAGGTTTGGGATCTTTTAGAGAGATTCAATGAAATTCTAGACCTGAAAGAACCATTGTTCTTAGAAGAGCTTGAGAAGGAACTTATCAACCCATGGTTCAATGAGTTAGATTTCCCTGAGAAATCTGACAGGGGAATGGGTGGAAGTTCACGAGGGGGTGATGGTGATTGCCGATTAATATCTGAAGCCTGTCCATCAGGTTCCACAGGAGCTTCTTCCTATGTCAGATGCTTTGGTGCGTCTTTGACTAAAGCTCACAGTTCACTACTAAGAGTGCTAATAGGTGAACTGCAATCGAAAGTGGCTGCTCTGGTGGATCCAAATTCTGAGCCTGGAGAGGCTCGGACAAGACGGGGAAGAAGGAAAGATATGGATAGTGCAGTTCCGCGGACCAAGATCAATATGCTTCCGATTAATGAATTGACTTGGCCAGAACTAGCGCGTAGATATATCTTGGCTTTCTTGTCAATGGACGGTAACCTGGAGTCTGCGGAGATTACTGCCCGGGAAAGTGGTAAAGTATTTCGTTGCTTAAGAGGTGATGGTGGTTTGCTGTGTGGTTCCCTTCCTGGTGTGGTTGGGATGGAAGCTGATGCATTGTTGCTTGCGGAGGCTACGAAGAAGATTTTTGGTTCTTTGAGCAGAGAAAAAGATGTACTCATCCTAGAAGAAGAGGAGTCTGATGCAAATGGTTCTTCTGAAGCTCAATTGGCGAATGATGGTAATATTCCTGAATGGGCACAAGTGCTGGAACCTGTCAGAAAACTACCAACAAATGTGGGAACCCGAATCAGAAGGTGTGTTCATGCAGCTCTAGAAAAGAATCCGCCCGATTGGGCAAGGAAAATACTGGAGCACTCAGTTAGCAAGGCAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTGTTGCATTATTGGATGGTGTAACTGATGGAGTGCAGCAGAATCTCAACAAGGGAAGGAAAAAGAAAATTTTTATATCTATTTCTGACATTATTATGAAACAATGCCGCATTGTGTTACGTCGCGCAGCTGCTTTAGATGATTCGAAAGTTTTTTGCAATTTGCTGGGAAGAAAATTAACAAATTCTTCTGACAACGATGATGAGGGGCTTCTTGGAACTCCAGCTATGGTGGCCCGCCCTCTTGACTTCCGGACTATTGATCTAAGATTGGCTTCTGGAGCTTATGGTGGATCACATGAAGCTTTTCTCGAGGACGTACGTGAGCTGTGGAGCAATGTTCGTGTTGCTTTTGGGGATCAATCTGATTTAGTTGAACTGTTAGAAAAATTATCCCAGAATTTTGAAAGTTTATACAATGAGGAGGTTGTCACCTACGTGCAAAAGTTTACAGACTATGCTGAAGTGGGATGCATAAATGCTGAAATGAAAAAAGAAGTTCAGGCTTTTATTGCTTCATCAAATGAGATTCCGAAAGCCCCTTGGGATGAGGGAGTCTGTAAAATTTGTGGCATCGATAGGGATGATGACAGTGTCTTACTGTGTGATACTTGTGACGCTGAGTATCATAAATATTGCTTGAACCCTCCTCTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTATTGGTGGTAAACATGCAACTCAAGATCTCACAGAACGAACACAGCTTACTGGAAAACGTAGAAGTAAAAAATTCCAGGGACAAGTTAATTGTCTTTACTTGGATGCGTTGACTCATTTATCATCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGTGTGGGAGAGAGAACACTCCTTCTCAAGTTTTTATGTGACGAGTTGCTCAATTCTTCCCTGATACGACAGCAGCTTGAGCAATGTTCTGAGTTGTCTGCTGAATTAAATCAGAAGTTGCGTGGACTTTCTGTAGAGTGGAAAAACCTGAAAATTAAGGAAGACGCTTTATCCACAAAAGCTGCCAAATTTGGTACATTGTCACAATGTACCACTGGGGAAGTTGGTCTTAAGGAAGGGTTCACATCTTTGTTCTCAAATACTAGTAAATGTCTAGTTAAGCCACATGCTACAACCACCAATCCTAGTGGTCTTGGGGTATTTGATGATAGTCTACCTTCAGAAGAGATTCCCAAAGAGAAGTGTAGGTTCAATAGTGTTGATAAAAGCATATCTGTGACACATTCAAATTCTGATAGCCAAAATATGAATTCCATAGATGGACAGCTTAAGACTGTTCCTGTGGCTGTGGAGTTTCAATGTACAGATAAATCCCCCAAGTCTTTTCCATCCTCAAATCATATGCCTCAAGAAATAAACGGTTACAGTGAAGGACAATGTGTGCCGGTTGAAGTTTCCCAAAATGCTGTTAATGAGTCGGAACCATACCACCTTGAGCTCAATGCCGTCAAGCGTAATATCTCACTACTGCAGGAATCTATAAATAGCGTAGGATCACAGCTTCTGAAGCTCCCTGTTCGTCGGGATCTTTTGGGTATTGATTCCATTGGCCGGCTGTACTGGGCTTTGGCTACACCCAGAGGACGTTCACGTATAGTTGTTGATGCAAGCGCTGTTCTTCAGCATGGAAGAGGATTGTCAGTTAGCAAAGATTCTGGAGAGAAGCTTTCTGCTCTGCAGCATTGTAAATTATCTGAGAAGGATAACTATAAGATGTTAGGGCTGATGAAGGAGTGCTCTTCTTTGATGTCCCAACCACTTAATGCGTTAGCCAATAGTTCACCGTGGATTGTTTATGAAACTGATTCAGAAATCGAGGAGCTATTGGGTTGGTTAGATGATTATGACCCTAAAGAAAAAGAACTGAGAGATTCCATTATGCTGGGGCCAAAATATAGATCTCAAGAGTTTATTAATGCACACACTGAAGGTCAGGTTGAGGACCAAGGACCTGTTTGTTTGCCAAGAAATACAGCACCTAACTCTCTTGTTACAAAGGCCACTTCTTTGCTGGAAAAGAATTACGGTCCCTTCTTTGAGTTGGATACTGCTGAGGTTTTGAAGAATCAAAATAAAAAGGCCAGAACAACCAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCCATATGGCCTTCTAGGAAACATTGCTTGTATTGCCACAAAACCTTTTTGAGCGATGTGGAGTTTGAGGGACACAATGGTGGAAAATGTAAAGCAGGACTTCTGGCGTTGGGGAGGAATAAAGATAAAAATGGATCTTCTAAAGGAAGGAAGAACTTGAAATGTGATACCTCACATGAAAAATCCAGAGCTGACACAGAAACAGCTGGAACCTCAATCAGTAGATGTTCTTCTGTAAATTCGAGATTGACTAAATTTTCAAATGAAAACCCCTCTTGCCCATTTAACTTTGAAGATACATGCTCAAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGCCCCATCCTTTGTGCCTTCCGTATCTCCTTTTGTTAGTGATTATACACGACCCTTAACCATAAAGGATGTTGGCGTTGCTGGTGGTGCGTCGAAAGCTTCACAAAGCCAGGTTTCTCAGGAAAACACTGACGGAGCTGGCATATGCCATGACCATAAATCAGGCAAATCTACGGAAAGTTTAGCTGCAAATAGAAGCAACAAAGCAGGAAATTCCAACAAATCATCTTTGGGAGAAGAAAGAGATGGGAAGCTATCTATTTGTAGTCCTGCTTCAGATAAGGGAGTTGATGGTTGCTGTGTGGTTCCTTTGTCCTCCTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTGAAGCAACTAAAGATTAATCTACTTGATATGGATGCTGCACTACCGAAAGCTGCTCTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCCTGGCGTGCATTTGTTAAATCTGCAACGACTATATATGAGATGATCCAGGCAATAATTACACTGGAGGATATGATTAAGACGGAGTTCTTAAAGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCCTCTACTTTGCCTTCTCTTGCTCTTCGCATATACTCCCTTGATTCAGCCATTATGTATGAGAAAATGCCTAATTCAAGTTTAACTGAGAGCTCTGATCCTCCTGCCGTAGCGGAACCGAAGCCAGTGATCACGGTGGATGCAGATAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATTGGATGGTTGA

Protein sequence

>Msa0934960

MIMAELTDSTAAGNNLPPPQQPPHQIDTRSILCIDLNEIPSPSPSSSFVETLPDFTVDIVRTYHENPAPPPGGPAPLPGGVTSCAVCSKSGAGGLVCDGCERSFHLACAGVRGGRIGAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHESRKHAMGDKSFAANQFGASVTYSTFNNGSVVGFQRASGAVTRPVRVGFEDILNHTQSMARSFEEVPSQTQGPNELILQALRDFISERHGVLVEGWRVDLRPSMIGSDMYAVYCAPDGKIFDSVYEVANYLGLPSGYNSMESEVRNETSLSSGGPHLSRKRKSSRTPAANGFAEKQGTFVNSNYKDCSSDGLSMEHVNAQGTALKATEIRRKENGHSDPHQFADELPLQFKDFSVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLDGGDSGPIFRIKRCSCSEFPIPDGSTILSMHNHCQFMSQTNEGQRETNDSMDLDGDESIQMMLLEPCAPTEDDILSCVVNCSSEAYASEGLRPVAGSIQYNTGYSFSDTMNFCDEIGQILVEERSPFSAWRVISQKLVNACKDICKKNGTFKFYCKHVESEMGLHRWDLRNSENDTHFTSLDKFCGSPGSVSIPDTIYADSDVKDLYELLEKWLEQDRFGLDAEFVQEILEPLLGVQDCLQYERLSSRNNSSSLPTVENGYLVVDRKGQSKYQDEVIQGLYRRPKKARLTEYVKENRCPPPGKPLCSRAPTELIGDIFQVWDLLERFNEILDLKEPLFLEELEKELINPWFNELDFPEKSDRGMGGSSRGGDGDCRLISEACPSGSTGASSYVRCFGASLTKAHSSLLRVLIGELQSKVAALVDPNSEPGEARTRRGRRKDMDSAVPRTKINMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLPGVVGMEADALLLAEATKKIFGSLSREKDVLILEEEESDANGSSEAQLANDGNIPEWAQVLEPVRKLPTNVGTRIRRCVHAALEKNPPDWARKILEHSVSKAVYKGNASGPTKKAVVALLDGVTDGVQQNLNKGRKKKIFISISDIIMKQCRIVLRRAAALDDSKVFCNLLGRKLTNSSDNDDEGLLGTPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDVRELWSNVRVAFGDQSDLVELLEKLSQNFESLYNEEVVTYVQKFTDYAEVGCINAEMKKEVQAFIASSNEIPKAPWDEGVCKICGIDRDDDSVLLCDTCDAEYHKYCLNPPLARIPEGNWYCPSCIGGKHATQDLTERTQLTGKRRSKKFQGQVNCLYLDALTHLSSVIEEKEYWEYSVGERTLLLKFLCDELLNSSLIRQQLEQCSELSAELNQKLRGLSVEWKNLKIKEDALSTKAAKFGTLSQCTTGEVGLKEGFTSLFSNTSKCLVKPHATTTNPSGLGVFDDSLPSEEIPKEKCRFNSVDKSISVTHSNSDSQNMNSIDGQLKTVPVAVEFQCTDKSPKSFPSSNHMPQEINGYSEGQCVPVEVSQNAVNESEPYHLELNAVKRNISLLQESINSVGSQLLKLPVRRDLLGIDSIGRLYWALATPRGRSRIVVDASAVLQHGRGLSVSKDSGEKLSALQHCKLSEKDNYKMLGLMKECSSLMSQPLNALANSSPWIVYETDSEIEELLGWLDDYDPKEKELRDSIMLGPKYRSQEFINAHTEGQVEDQGPVCLPRNTAPNSLVTKATSLLEKNYGPFFELDTAEVLKNQNKKARTTNDEKLYRCECLEPIWPSRKHCLYCHKTFLSDVEFEGHNGGKCKAGLLALGRNKDKNGSSKGRKNLKCDTSHEKSRADTETAGTSISRCSSVNSRLTKFSNENPSCPFNFEDTCSKFVTNDSNKELVREIGLIGSDGAPSFVPSVSPFVSDYTRPLTIKDVGVAGGASKASQSQVSQENTDGAGICHDHKSGKSTESLAANRSNKAGNSNKSSLGEERDGKLSICSPASDKGVDGCCVVPLSSLRPLVGKVSHILKQLKINLLDMDAALPKAALRPSKAQLDRRQAWRAFVKSATTIYEMIQAIITLEDMIKTEFLKNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIMYEKMPNSSLTESSDPPAVAEPKPVITVDADKSKGSRKSNRKRKELDG*