AlfalfaGEDB | Msa1199810

M. sativa cultivar zhongmu-4 / Msa1199810

KEGG: K13094
GO: GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1199810	sp\|F4JCU0\|SUA_ARATH	52.527	1108	385	29	1	1072	1	1003	0.0	964

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1199810	A0A072U387	92.950	1078	55	4	1	1072	1	1063	0.0	1885

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037120	Msa1199810	0.801070	1.070881e-48	-8.615850e-47
Msa0076170	Msa1199810	0.800856	1.184372e-48	-8.615850e-47
Msa0089980	Msa1199810	0.814330	1.628019e-51	-8.615850e-47
Msa0090010	Msa1199810	0.812160	4.876446e-51	-8.615850e-47
Msa0143850	Msa1199810	0.802231	6.187926e-49	-8.615850e-47
Msa0177170	Msa1199810	0.811502	6.779956e-51	-8.615850e-47
Msa0395980	Msa1199810	0.802061	6.706886e-49	-8.615850e-47
Msa0423840	Msa1199810	0.805413	1.351319e-49	-8.615850e-47
Msa0624680	Msa1199810	0.801239	9.890559e-49	-8.615850e-47
Msa0934960	Msa1199810	0.805073	1.592098e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1199810	MtrunA17_Chr8g0369281	92.950	1078	55	4	1	1072	1	1063	0.0	1885

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1199810	AT3G54230.2	52.617	1108	385	28	1	1072	1	1004	970
Msa1199810	AT3G54230.5	52.527	1108	385	29	1	1072	1	1003	964
Msa1199810	AT3G54230.1	52.527	1108	385	29	1	1072	1	1003	964
Msa1199810	AT3G54230.4	53.506	1041	358	27	68	1072	9	959	918
Msa1199810	AT3G54230.3	56.812	778	259	18	316	1072	2	723	777

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Find 296 sgRNAs with CRISPR-Local

Find 702 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGATGTCTCCTCCCT+GGG	0.502567	8_1:+52069527	Msa1199810:CDS
AAAAGCACTTGCCAGGTTTC+GGG	0.239384	8_1:+52070872	Msa1199810:CDS
AAAAGGATTAATACCACGGA+AGG	0.572345	8_1:-52064780	None:intergenic
AAAATCGCGATTGAAGATCT+AGG	0.443749	8_1:-52062712	None:intergenic
AAACCATCCATTTGGTTGTA+TGG	0.322439	8_1:-52063861	None:intergenic
AAACGAGAAGCCAGCTTCAC+TGG	0.434194	8_1:+52068989	Msa1199810:CDS
AAAGCTCTTGACTTAACAAA+TGG	0.431454	8_1:+52066293	Msa1199810:CDS
AAAGTTGGACCCTAGCCTTG+AGG	0.711756	8_1:+52070812	Msa1199810:CDS
AAATCAGATACTTCTTATTC+TGG	0.262537	8_1:+52069428	Msa1199810:CDS
AAATCGCGATTGAAGATCTA+GGG	0.538122	8_1:-52062711	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGAACTTTGAACGATATA+AGG	-	chr8_1:52062636-52062655	None:intergenic	30.0%
TTTGAGGATTACATTCGAAT+TGG	+	chr8_1:52062980-52062999	Msa1199810:intron	30.0%
TTGAGGATTACATTCGAATT+GGG	+	chr8_1:52062981-52063000	Msa1199810:intron	30.0%
TAACAAGGTTCAAAACTCAT+GGG	+	chr8_1:52063008-52063027	Msa1199810:intron	30.0%
TCTGTTTGTGCATATATTAC+AGG	+	chr8_1:52063066-52063085	Msa1199810:intron	30.0%
CTGTTTGTGCATATATTACA+GGG	+	chr8_1:52063067-52063086	Msa1199810:intron	30.0%
TGTTTGTGCATATATTACAG+GGG	+	chr8_1:52063068-52063087	Msa1199810:intron	30.0%
TAAAATTCACCTATGTGATG+TGG	+	chr8_1:52063209-52063228	Msa1199810:intron	30.0%
AAAATTCACCTATGTGATGT+GGG	+	chr8_1:52063210-52063229	Msa1199810:intron	30.0%
AAATAATGAATGATGAGACG+AGG	-	chr8_1:52063334-52063353	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	52062611	52071133	52062611	ID=Msa1199810;Name=Msa1199810
chr8_1	mRNA	52062611	52071133	52062611	ID=Msa1199810-mRNA-1;Parent=Msa1199810;Name=Msa1199810-mRNA-1;_AED=0.16;_eAED=0.16;_QI=190\|0.81\|0.82\|0.94\|0.87\|0.82\|17\|231\|1072
chr8_1	exon	52062611	52062753	52062611	ID=Msa1199810-mRNA-1:exon:16549;Parent=Msa1199810-mRNA-1
chr8_1	exon	52063088	52063182	52063088	ID=Msa1199810-mRNA-1:exon:16550;Parent=Msa1199810-mRNA-1
chr8_1	exon	52063388	52063428	52063388	ID=Msa1199810-mRNA-1:exon:16551;Parent=Msa1199810-mRNA-1
chr8_1	exon	52063641	52064457	52063641	ID=Msa1199810-mRNA-1:exon:16552;Parent=Msa1199810-mRNA-1
chr8_1	exon	52064537	52064608	52064537	ID=Msa1199810-mRNA-1:exon:16553;Parent=Msa1199810-mRNA-1
chr8_1	exon	52064696	52064788	52064696	ID=Msa1199810-mRNA-1:exon:16554;Parent=Msa1199810-mRNA-1
chr8_1	exon	52064866	52064945	52064866	ID=Msa1199810-mRNA-1:exon:16555;Parent=Msa1199810-mRNA-1
chr8_1	exon	52065068	52065206	52065068	ID=Msa1199810-mRNA-1:exon:16556;Parent=Msa1199810-mRNA-1
chr8_1	exon	52065406	52065493	52065406	ID=Msa1199810-mRNA-1:exon:16557;Parent=Msa1199810-mRNA-1
chr8_1	exon	52065564	52065655	52065564	ID=Msa1199810-mRNA-1:exon:16558;Parent=Msa1199810-mRNA-1
chr8_1	exon	52065766	52065834	52065766	ID=Msa1199810-mRNA-1:exon:16559;Parent=Msa1199810-mRNA-1
chr8_1	exon	52066278	52066390	52066278	ID=Msa1199810-mRNA-1:exon:16560;Parent=Msa1199810-mRNA-1
chr8_1	exon	52068006	52068241	52068006	ID=Msa1199810-mRNA-1:exon:16561;Parent=Msa1199810-mRNA-1
chr8_1	exon	52068570	52068611	52068570	ID=Msa1199810-mRNA-1:exon:16562;Parent=Msa1199810-mRNA-1
chr8_1	exon	52068805	52069737	52068805	ID=Msa1199810-mRNA-1:exon:16563;Parent=Msa1199810-mRNA-1
chr8_1	exon	52070215	52070393	52070215	ID=Msa1199810-mRNA-1:exon:16564;Parent=Msa1199810-mRNA-1
chr8_1	exon	52070726	52071133	52070726	ID=Msa1199810-mRNA-1:exon:16565;Parent=Msa1199810-mRNA-1
chr8_1	five_prime_UTR	52062611	52062753	52062611	ID=Msa1199810-mRNA-1:five_prime_utr;Parent=Msa1199810-mRNA-1
chr8_1	five_prime_UTR	52063088	52063134	52063088	ID=Msa1199810-mRNA-1:five_prime_utr;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52063135	52063182	52063135	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52063388	52063428	52063388	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52063641	52064457	52063641	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52064537	52064608	52064537	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52064696	52064788	52064696	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52064866	52064945	52064866	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52065068	52065206	52065068	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52065406	52065493	52065406	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52065564	52065655	52065564	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52065766	52065834	52065766	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52066278	52066390	52066278	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52068006	52068241	52068006	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52068570	52068611	52068570	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52068805	52069737	52068805	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52070215	52070393	52070215	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	CDS	52070726	52070902	52070726	ID=Msa1199810-mRNA-1:cds;Parent=Msa1199810-mRNA-1
chr8_1	three_prime_UTR	52070903	52071133	52070903	ID=Msa1199810-mRNA-1:three_prime_utr;Parent=Msa1199810-mRNA-1

Gene Sequence

>Msa1199810

ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGAGTCGGTGGCGCTTATGATGAAAGACGGTTTATAGATGAAAGATATCCAAGGGATGCTGTTTACCAGAGAAATAATTTCCATCATGATGCTTTAGATGGGGAGGCGTTTTTGCCACCAGGACCTGCTGTTGGCCAGTGGAGTCAATCCAAACGGAGGGGTTACGATGAAGATTATCCACTTGAAAGGGAATCTAGACGCTTTCAGAGACCTTATCATGAACCATACAACCAAATGGATGGTTTTAGGGATCGGGAGATTGACATGTACCCGGAGTATGATAAGTTTCGAGATGGTTATACCAACATTGAAAACTATAGTGATCGAGGCTATGACAAACCTGCCAGGTTTGCAGGGCATGACCGTGATGATTATGCATATGATGATTATGGCCACAAGTCCCGTGTTTCCCATCATCGGAGGGAGGATAGTCATGAGAAGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGATGGCAGAAGAGATAGTAATTGGAGGCGACGTGAATCACGCGATCGAGAACGAGACAAGAGATGTCTTAGTCGGGAAAAAGATCCAAGTCTGCATAGGAAACATGAGCGTTCGCGATCTCGTTCTCGATCTCGGTCTCACTCCCGTTCCCATTCTCACTCTCGTTCCCGTTCGCAATCTCGTGGATATGATGATCATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCGTAGTAGAAGTTATCGCGAAGACAACTATGCTGACAATCGATATGATAGAAGTGAAAGACGCAGGGACCATGATGATAAACATCAGAGGGAGCATTATTCTGTGGCTCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACCGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTTCGTGTTATAAAAGAGAGAAGTTCTGGCATCTCTCGTGGATTCGCATTTATTGATTTTCCTTCCGTGGGAGCTGCACAAGTAATGATGGACAAACTCGGAGGTGATGGTCTTGTTTTTGATGGAAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCGGGTTCAGATGGAGCTATGAAACCAGGTCACAGTCATAAGAGCATTACAATACCATCTGATTGGATGTGCATTGAATGTAGCTACATCAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAACCACGGACAGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAACATCCTTAGGAAAGAAAGGTTTAGAGGCGGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCCGATGAGGAAATGCTCCGCTATGAGTTTTCCAAGCATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTCACTCACGTCTCAAGAGGATTTGCATTTGTACATTTTTATTCGGTAGAGGATGCTACCAAAGCTCTTGACTTAACAAATGGAACGGCCCTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGCATACTGGGGCCTGGATCAGGGGTTTCTGATATAACGTTAAGTTGCCATACATTTGATATGTGTCTTGTGCTTTTCTCTAATCTTCAGTATGATTCTGTTGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCTGAGCAGCCTGGTACTGATGTTGGTGCACCACAATCAGGCTTTGTTTGGGACGAAGCATCTGGTTATTACTATGATGCTACTTCTGGGTTTTATTATGACGGGAATACTGAAGGCATGAAGCTGCAGAATTTTGCAGAACTCTGCATGTGCTGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCATACTCAGCAGTACATCCCATGCACCGATCAAAATCAGAATAAAACATCTAATAACGAGTCTGAACCTTCTAAGGTATCTGATGGTTCTAGCACTAAAAAAGTGGTGATTTCTGCACCAGCTACTATTGTTACTTCAAACGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCAGCTGCAGCTGCTGCTGCAGCTGCAGAGAAGAAAGAGAAAGAAAGATCAAAGGAGATAAAACTTGCTTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGCTGACAATGTGGAAGCAGAGGAGTCATGAGGGACAAGCTACTCGTGTGGCACTGGAGGACAATCCGTTATCTGGTTCTGCTGACGATAGGTCATATTCTTCTGCACATTCTGCAAAGAACAAGTTAAAAACTGAGACAGTCGCAAGGGAAATTAACGCGTCTAATCCGGGAGGTCACACAACTGCACAGGTTGCCGCTACTGACTCTCAGGCACATCCACGACCCTTCAGTAACAGCCTTGGGGGTACTCTTATGGGGGTTATTAGGGGCTCAGGAAGAGGTGTTGTTAAATCAGATACTTCTTATTCTGGCTCTACATCTGCCACACCATCTATGTCCGCTTCATCTTCTGCAAATGTTGATACACAAACATTTGCTACTCCCTTTAAAACAGATGTCTCCTCCCTGGGTTCATATACACCATCTGCGTCTGTTGGAAGTGGACGAAGAAGGTTTTCAGAAATGCCTCTTTCTGCTTCAACTCATAAGGAACAGTCCCAAACAACCTACAGGGATCGGGCAGCTGAGAGAAGAAATTTATATGGCTCGTCATCTTCAGTTGGCAATGATTTGGCTGACCTCGAAATTGGGGATTCAACTCGCGATTTTGCATCAAGGAGGGGTGATACAATGCCATTCCCTCCCGGGGTTGGTGGAGGACGCGCGGTTGGTGATGTCAACCTCGATACTTTTGAGGTGATTACAGCAGACAAAGCGATTGATGAAAAGAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGCTTGGGGCTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCAGACACAAGCCATGGAAAATAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGACCCTAGCCTTGAGGTGCAGGCAGGCGATAGCTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAAATGTAG

Protein sequence

>Msa1199810

MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGAYDERRFIDERYPRDAVYQRNNFHHDALDGEAFLPPGPAVGQWSQSKRRGYDEDYPLERESRRFQRPYHEPYNQMDGFRDREIDMYPEYDKFRDGYTNIENYSDRGYDKPARFAGHDRDDYAYDDYGHKSRVSHHRREDSHEKDYDHGRHSYDSDYERDGRRDSNWRRRESRDRERDKRCLSREKDPSLHRKHERSRSRSRSRSHSRSHSHSRSRSQSRGYDDHPKSRSPRGRSRSRSYREDNYADNRYDRSERRRDHDDKHQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAAQVMMDKLGGDGLVFDGRKLFFEYSSKPTGGAGSDGAMKPGHSHKSITIPSDWMCIECSYINFARRTSCYQCNEPRTDDAPAADISLSNSTSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLTNGTALEKNGQILRVAYAKSILGPGSGVSDITLSCHTFDMCLVLFSNLQYDSVGWAPKEYNPDDKQSNGPEQPGTDVGAPQSGFVWDEASGYYYDATSGFYYDGNTEGMKLQNFAELCMCCLYYDGNNGIWYSYDHHTQQYIPCTDQNQNKTSNNESEPSKVSDGSSTKKVVISAPATIVTSNEKPASLADAVQAAAAAAAAAEKKEKERSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNPLSGSADDRSYSSAHSAKNKLKTETVAREINASNPGGHTTAQVAATDSQAHPRPFSNSLGGTLMGVIRGSGRGVVKSDTSYSGSTSATPSMSASSSANVDTQTFATPFKTDVSSLGSYTPSASVGSGRRRFSEMPLSASTHKEQSQTTYRDRAAERRNLYGSSSSVGNDLADLEIGDSTRDFASRRGDTMPFPPGVGGGRAVGDVNLDTFEVITADKAIDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREM*