AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937030 MtrunA17_Chr6g0453041 100.000 92 0 0 1 92 1 92 1.62e-59 176
Msa0937030 MtrunA17_Chr7g0217141 84.946 93 13 1 1 92 1 93 8.23e-48 147
Msa0937030 MtrunA17_Chr5g0416431 68.421 76 24 0 15 90 17 92 4.15e-33 110
Msa0937030 MtrunA17_Chr8g0362131 69.880 83 24 1 8 90 10 91 5.13e-33 109
Msa0937030 MtrunA17_Chr3g0093001 73.077 78 19 1 15 92 17 92 9.80e-33 108
Msa0937030 MtrunA17_Chr7g0237771 49.351 77 36 1 1 77 1 74 6.46e-13 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937030 AT3G28857.1 76.923 91 20 1 1 90 1 91 9.22e-43 134
Msa0937030 AT5G39860.1 75.000 80 19 1 12 90 12 91 3.48e-36 118
Msa0937030 AT1G26945.1 77.333 75 17 0 17 91 19 93 2.25e-35 116
Msa0937030 AT5G15160.1 72.368 76 20 1 17 91 18 93 5.23e-33 110
Msa0937030 AT1G74500.1 67.089 79 23 2 15 92 17 93 2.29e-29 100
Msa0937030 AT3G47710.1 61.702 94 32 3 1 92 1 92 7.58e-29 99.8

Find 43 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTCATTTGTATCTTCT+TGG 0.134498 6_3:-8051211 Msa0937030:five_prime_UTR
TTGTACCCTTCCTTCATTTA+TGG 0.173413 6_3:-8051415 Msa0937030:five_prime_UTR
CTAAAGCTTATTGATTAATT+AGG 0.226540 6_3:+8048745 None:intergenic
ATTTAACAAGTGATACATTT+TGG 0.241523 6_3:+8048516 None:intergenic
AGAAAGTAACAAGAATTAAT+TGG 0.253814 6_3:+8051243 None:intergenic
AAGTGATAAGAGAGATATAA+AGG 0.275102 6_3:+8051380 None:intergenic
TGAAAGATTATCTCAGTTAT+TGG 0.286390 6_3:-8048811 Msa0937030:CDS
AGGATGTTGCTTAAGTAAAA+TGG 0.293594 6_3:+8051497 None:intergenic
CTTGTTAAATCTATTAATTA+AGG 0.323166 6_3:-8048503 Msa0937030:three_prime_UTR
TGTAGTTGCAAGTCTCTTGT+AGG 0.341927 6_3:+8048868 None:intergenic
GAGAGATGAGCCTAAAATAT+TGG 0.345392 6_3:+8051521 None:intergenic
AGAGATATAAAGGGAGAGAA+AGG 0.390071 6_3:+8051390 None:intergenic
AATATGACACATGGATATAT+AGG 0.392084 6_3:+8048548 None:intergenic
AGGAACAAGTTGACGTAACT+TGG 0.402465 6_3:+8051058 None:intergenic
CCATGTGTCATATTTATAGA+TGG 0.409090 6_3:-8048539 Msa0937030:three_prime_UTR
AGTGATAAGAGAGATATAAA+GGG 0.412697 6_3:+8051381 None:intergenic
TGTGCAGGTATCAGCATCTA+AGG 0.416549 6_3:-8048892 Msa0937030:intron
TTGAAGCAAACAATTGCATT+GGG 0.420570 6_3:+8051461 None:intergenic
CAAGCTATATAGTGGAGAAA+AGG 0.438595 6_3:+8051297 None:intergenic
TTTGAAGCAAACAATTGCAT+TGG 0.440035 6_3:+8051460 None:intergenic
GAAGTAGAGTTAAAAGCTAT+AGG 0.445526 6_3:+8051338 None:intergenic
AAAAGGAGAGGAGGAATGGT+AGG 0.449810 6_3:+8051314 None:intergenic
GGAGAAAAGGAGAGGAGGAA+TGG 0.452365 6_3:+8051310 None:intergenic
ACAAAAGACAAGCTATATAG+TGG 0.459591 6_3:+8051289 None:intergenic
GAACGTCTATGACGAATCTC+AGG 0.523567 6_3:+8051038 None:intergenic
CTTCTGATAATATTAGCCTC+TGG 0.544212 6_3:+8048768 None:intergenic
GAGATATAAAGGGAGAGAAA+GGG 0.548125 6_3:+8051391 None:intergenic
TAACCAAGAAGATACAAATG+AGG 0.550806 6_3:+8051208 None:intergenic
GCTAGCTAGAGTGTAGTTTG+AGG 0.561721 6_3:-8048645 Msa0937030:three_prime_UTR
CATTGGGAAAGCAGTGGCGT+AGG 0.572730 6_3:+8051477 None:intergenic
AAGGGACCATAAATGAAGGA+AGG 0.578025 6_3:+8051409 None:intergenic
GAGAAAGGGACCATAAATGA+AGG 0.578289 6_3:+8051405 None:intergenic
ATAGTGGAGAAAAGGAGAGG+AGG 0.581549 6_3:+8051305 None:intergenic
CCATCTATAAATATGACACA+TGG 0.592729 6_3:+8048539 None:intergenic
TATATAGTGGAGAAAAGGAG+AGG 0.597974 6_3:+8051302 None:intergenic
CATAATATATACCTAGATGT+TGG 0.599785 6_3:+8051151 None:intergenic
AGGGACCATAAATGAAGGAA+GGG 0.600605 6_3:+8051410 None:intergenic
TATATATTATGTCTAGCAGA+AGG 0.605924 6_3:-8051139 Msa0937030:exon
AACCAAGAAGATACAAATGA+GGG 0.624359 6_3:+8051209 None:intergenic
TTATGTCTAGCAGAAGGTCA+AGG 0.634096 6_3:-8051133 Msa0937030:CDS
TCGTCATAGACGTTCAGACA+AGG 0.661917 6_3:-8051030 Msa0937030:intron
CAATTGCATTGGGAAAGCAG+TGG 0.712328 6_3:+8051471 None:intergenic
AATTGATGCTGATAGTCCAG+AGG 0.714162 6_3:-8048784 Msa0937030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTAAAAAAATAT+AGG - chr6_3:8049163-8049182 Msa0937030:intron 0.0%
!!! TTATATTTTCATATATAACT+AGG - chr6_3:8049112-8049131 Msa0937030:intron 10.0%
!! AAGAAATTAACATAATATTA+TGG - chr6_3:8049233-8049252 Msa0937030:intron 10.0%
!! AGAAATTAACATAATATTAT+GGG - chr6_3:8049234-8049253 Msa0937030:intron 10.0%
!! TTTAAAGGATATATATTATA+GGG + chr6_3:8049718-8049737 None:intergenic 10.0%
!!! TTTTAAAGGATATATATTAT+AGG + chr6_3:8049719-8049738 None:intergenic 10.0%
!!! TTTTATTGATTTATTTACTT+TGG + chr6_3:8050535-8050554 None:intergenic 10.0%
!! TTATTCATAATTTATGAATA+TGG - chr6_3:8050931-8050950 Msa0937030:intron 10.0%
!!! AATTAATTGGTTTATTTTGT+TGG + chr6_3:8048719-8048738 None:intergenic 15.0%
!! AAAAACTAACATAAAAACTA+AGG + chr6_3:8048984-8049003 None:intergenic 15.0%
!!! TTAGTTTTTATGTTAGTTTT+TGG - chr6_3:8048983-8049002 Msa0937030:intron 15.0%
!!! TAGTTTTTATGTTAGTTTTT+GGG - chr6_3:8048984-8049003 Msa0937030:intron 15.0%
!! TAATAACATATGTTAAGAAA+AGG + chr6_3:8049078-8049097 None:intergenic 15.0%
!! TATATCATAACAATAGTAAA+TGG - chr6_3:8049284-8049303 Msa0937030:intron 15.0%
!! ACAAAAAAAAAAATCAAAAC+TGG + chr6_3:8050620-8050639 None:intergenic 15.0%
!!! AGTTTTGATTTTTTTTTTTG+TGG - chr6_3:8050619-8050638 Msa0937030:intron 15.0%
!! TTTATGTAACTAATCAAAAT+TGG + chr6_3:8050723-8050742 None:intergenic 15.0%
!!! TTTGATTAGTTACATAAAAA+TGG - chr6_3:8050725-8050744 Msa0937030:intron 15.0%
!! CTTGTTAAATCTATTAATTA+AGG - chr6_3:8051469-8051488 Msa0937030:five_prime_UTR 15.0%
!! AGAAAGTAACAAGAATTAAT+TGG + chr6_3:8048732-8048751 None:intergenic 20.0%
!! AAAAGGAAAATATTGTTAGT+GGG + chr6_3:8049061-8049080 None:intergenic 20.0%
!! ACATAAAACCAAGTTTAATT+TGG - chr6_3:8049187-8049206 Msa0937030:intron 20.0%
!! ATTAACATAATATTATGGGT+AGG - chr6_3:8049238-8049257 Msa0937030:intron 20.0%
!! AGACTACTAAAATATAACAT+TGG + chr6_3:8049511-8049530 None:intergenic 20.0%
!! CTTAAAAATATAACGTAAAG+TGG - chr6_3:8049605-8049624 Msa0937030:intron 20.0%
!!! AGCATTTTTCAACTTTTTAA+AGG + chr6_3:8049733-8049752 None:intergenic 20.0%
!!! ATCGTTAACATGTATTTTAA+GGG + chr6_3:8049764-8049783 None:intergenic 20.0%
!!! AATCGTTAACATGTATTTTA+AGG + chr6_3:8049765-8049784 None:intergenic 20.0%
!! CATTAGTAGAAATTATGTTA+TGG - chr6_3:8049786-8049805 Msa0937030:intron 20.0%
!! CGATCTTTGATAAAATAAAT+TGG + chr6_3:8049821-8049840 None:intergenic 20.0%
!! AATTAACAATAACATGTGTA+GGG - chr6_3:8049907-8049926 Msa0937030:intron 20.0%
!!! CTATAATAATATAGCCTTAT+AGG + chr6_3:8050021-8050040 None:intergenic 20.0%
!!! TAATAATGAGAAACGTTTTT+TGG - chr6_3:8050181-8050200 Msa0937030:intron 20.0%
!!! TTTAAAACCTTTTCCTTTTT+GGG + chr6_3:8050282-8050301 None:intergenic 20.0%
!!! AAGGTTTTAAAGGTAAAAAA+AGG - chr6_3:8050291-8050310 Msa0937030:intron 20.0%
!! TAAAATAATGTTCGTACTTA+GGG + chr6_3:8050459-8050478 None:intergenic 20.0%
!! ATAAAATAATGTTCGTACTT+AGG + chr6_3:8050460-8050479 None:intergenic 20.0%
!! ATACAACTACAATAAAATCA+TGG - chr6_3:8050478-8050497 Msa0937030:intron 20.0%
!! CATAATATATGTAAGATTAG+GGG + chr6_3:8050660-8050679 None:intergenic 20.0%
!! GCATAATATATGTAAGATTA+GGG + chr6_3:8050661-8050680 None:intergenic 20.0%
!! TGCATAATATATGTAAGATT+AGG + chr6_3:8050662-8050681 None:intergenic 20.0%
!!! CTAAAGCTTATTGATTAATT+AGG + chr6_3:8051230-8051249 None:intergenic 20.0%
!!! ATTTAACAAGTGATACATTT+TGG + chr6_3:8051459-8051478 None:intergenic 20.0%
! AGTGATAAGAGAGATATAAA+GGG + chr6_3:8048594-8048613 None:intergenic 25.0%
! AAGTGATAAGAGAGATATAA+AGG + chr6_3:8048595-8048614 None:intergenic 25.0%
! CATAATATATACCTAGATGT+TGG + chr6_3:8048824-8048843 None:intergenic 25.0%
! TATATATTATGTCTAGCAGA+AGG - chr6_3:8048833-8048852 Msa0937030:CDS 25.0%
! GAAAAGGAAAATATTGTTAG+TGG + chr6_3:8049062-8049081 None:intergenic 25.0%
!!! AAAACCAAGTTTAATTTGGA+AGG - chr6_3:8049191-8049210 Msa0937030:intron 25.0%
!!! AAACCAAGTTTAATTTGGAA+GGG - chr6_3:8049192-8049211 Msa0937030:intron 25.0%
! ATAACAATAGTAAATGGTCA+AGG - chr6_3:8049290-8049309 Msa0937030:intron 25.0%
! TAACAATAGTAAATGGTCAA+GGG - chr6_3:8049291-8049310 Msa0937030:intron 25.0%
! AAACAATGATAAGGATCTTA+CGG + chr6_3:8049538-8049557 None:intergenic 25.0%
! TTCATTAAACAATGTTACCA+GGG + chr6_3:8049569-8049588 None:intergenic 25.0%
! ATTCATTAAACAATGTTACC+AGG + chr6_3:8049570-8049589 None:intergenic 25.0%
! ATTGTTAATTCGTGTCTTTA+CGG + chr6_3:8049897-8049916 None:intergenic 25.0%
! GAATTAACAATAACATGTGT+AGG - chr6_3:8049906-8049925 Msa0937030:intron 25.0%
! GTCTAAAAAAAATGGCTTAT+TGG - chr6_3:8049979-8049998 Msa0937030:intron 25.0%
! GTATGTAATAAAAGCCTATA+AGG - chr6_3:8050004-8050023 Msa0937030:intron 25.0%
! TAGAAACATATCTAAGAACT+TGG - chr6_3:8050038-8050057 Msa0937030:intron 25.0%
!! TTAAAACCTTTTCCTTTTTG+GGG + chr6_3:8050281-8050300 None:intergenic 25.0%
!!! CTTTAAAACCTTTTCCTTTT+TGG + chr6_3:8050283-8050302 None:intergenic 25.0%
!!! CAAAAAGGAAAAGGTTTTAA+AGG - chr6_3:8050281-8050300 Msa0937030:intron 25.0%
!! TGTACAAACACATCAATTTT+TGG - chr6_3:8050404-8050423 Msa0937030:intron 25.0%
! TTTAGGTCTCATATTATGTT+CGG - chr6_3:8050584-8050603 Msa0937030:intron 25.0%
! AAAAAAAATCAAAACTGGAC+TGG + chr6_3:8050615-8050634 None:intergenic 25.0%
! TCATAATTTATGAATATGGC+AGG - chr6_3:8050935-8050954 Msa0937030:intron 25.0%
! TGAAAGATTATCTCAGTTAT+TGG - chr6_3:8051161-8051180 Msa0937030:five_prime_UTR 25.0%
!!! AGAGTGTACTTTATTTTAGA+TGG - chr6_3:8051304-8051323 Msa0937030:five_prime_UTR 25.0%
!!! GAGTGTACTTTATTTTAGAT+GGG - chr6_3:8051305-8051324 Msa0937030:five_prime_UTR 25.0%
! AATATGACACATGGATATAT+AGG + chr6_3:8051427-8051446 None:intergenic 25.0%
! AGGATGTTGCTTAAGTAAAA+TGG + chr6_3:8048478-8048497 None:intergenic 30.0%
TTGAAGCAAACAATTGCATT+GGG + chr6_3:8048514-8048533 None:intergenic 30.0%
! TTTGAAGCAAACAATTGCAT+TGG + chr6_3:8048515-8048534 None:intergenic 30.0%
GAAGTAGAGTTAAAAGCTAT+AGG + chr6_3:8048637-8048656 None:intergenic 30.0%
ACAAAAGACAAGCTATATAG+TGG + chr6_3:8048686-8048705 None:intergenic 30.0%
AACCAAGAAGATACAAATGA+GGG + chr6_3:8048766-8048785 None:intergenic 30.0%
TAACCAAGAAGATACAAATG+AGG + chr6_3:8048767-8048786 None:intergenic 30.0%
AGAAAAATACACCAACATCT+AGG - chr6_3:8048810-8048829 Msa0937030:CDS 30.0%
TATCCCTTCCAAATTAAACT+TGG + chr6_3:8049198-8049217 None:intergenic 30.0%
AATGCTCTTTAAATTTGACG+AGG + chr6_3:8049432-8049451 None:intergenic 30.0%
! GCACTTGTTAAACAATGATA+AGG + chr6_3:8049547-8049566 None:intergenic 30.0%
!!! CATTTTTTTTAGACCAAGAG+AGG + chr6_3:8049973-8049992 None:intergenic 30.0%
CTCTCTTGGTCTAAAAAAAA+TGG - chr6_3:8049971-8049990 Msa0937030:intron 30.0%
TGATAATCATATCTCGCTTT+AGG - chr6_3:8050567-8050586 Msa0937030:intron 30.0%
! ACTGACTAATTTTATTGTGC+AGG - chr6_3:8051065-8051084 Msa0937030:CDS 30.0%
CCATCTATAAATATGACACA+TGG + chr6_3:8051436-8051455 None:intergenic 30.0%
CCATGTGTCATATTTATAGA+TGG - chr6_3:8051433-8051452 Msa0937030:five_prime_UTR 30.0%
GAGAGATGAGCCTAAAATAT+TGG + chr6_3:8048454-8048473 None:intergenic 35.0%
TTGTACCCTTCCTTCATTTA+TGG - chr6_3:8048557-8048576 Msa0937030:three_prime_UTR 35.0%
GAGATATAAAGGGAGAGAAA+GGG + chr6_3:8048584-8048603 None:intergenic 35.0%
AGAGATATAAAGGGAGAGAA+AGG + chr6_3:8048585-8048604 None:intergenic 35.0%
! TATATAGTGGAGAAAAGGAG+AGG + chr6_3:8048673-8048692 None:intergenic 35.0%
! CAAGCTATATAGTGGAGAAA+AGG + chr6_3:8048678-8048697 None:intergenic 35.0%
!!! TCAAAGGAGTTTTAAGCAAG+AGG + chr6_3:8049025-8049044 None:intergenic 35.0%
GGGTTAAGAGACATTATCAA+AGG + chr6_3:8049041-8049060 None:intergenic 35.0%
TAATTTGGAAGGGATAGTCT+AGG - chr6_3:8049202-8049221 Msa0937030:intron 35.0%
TCTTGAAGCTCATGAAAATC+AGG - chr6_3:8049402-8049421 Msa0937030:intron 35.0%
AACATTGGCGACAAATAATG+TGG + chr6_3:8049496-8049515 None:intergenic 35.0%
AGTGGGGATAAAACTTTGTT+GGG + chr6_3:8049950-8049969 None:intergenic 35.0%
TAACAGTCATGAGGTAATTG+TGG - chr6_3:8050325-8050344 Msa0937030:intron 35.0%
! TGAGTTTAGGTTAGTTGGTA+GGG + chr6_3:8050689-8050708 None:intergenic 35.0%
TATACTGTCCTTTGTCACAA+AGG + chr6_3:8050997-8051016 None:intergenic 35.0%
! CTTCTGATAATATTAGCCTC+TGG + chr6_3:8051207-8051226 None:intergenic 35.0%
! TGAGGTGTGCAATTTTCATA+TGG - chr6_3:8051345-8051364 Msa0937030:five_prime_UTR 35.0%
!!! ATATGGCGGGTATATTTTGA+AGG - chr6_3:8051362-8051381 Msa0937030:five_prime_UTR 35.0%
AGGGACCATAAATGAAGGAA+GGG + chr6_3:8048565-8048584 None:intergenic 40.0%
AAGGGACCATAAATGAAGGA+AGG + chr6_3:8048566-8048585 None:intergenic 40.0%
GAGAAAGGGACCATAAATGA+AGG + chr6_3:8048570-8048589 None:intergenic 40.0%
CTCCCTCATTTGTATCTTCT+TGG - chr6_3:8048761-8048780 Msa0937030:CDS 40.0%
TTATGTCTAGCAGAAGGTCA+AGG - chr6_3:8048839-8048858 Msa0937030:CDS 40.0%
! AGGAACAAGTTGACGTAACT+TGG + chr6_3:8048917-8048936 None:intergenic 40.0%
TCATTGTTTAACAAGTGCCC+TGG - chr6_3:8049549-8049568 Msa0937030:intron 40.0%
GAGTGGGGATAAAACTTTGT+TGG + chr6_3:8049951-8049970 None:intergenic 40.0%
! TTTTAGACCAAGAGAGGAGT+GGG + chr6_3:8049967-8049986 None:intergenic 40.0%
! TTTTTAGACCAAGAGAGGAG+TGG + chr6_3:8049968-8049987 None:intergenic 40.0%
AGATTGACCATGACATTGTC+TGG + chr6_3:8050068-8050087 None:intergenic 40.0%
TGTCATGGTCAATCTTACGA+AGG - chr6_3:8050073-8050092 Msa0937030:intron 40.0%
GTCATGGTCAATCTTACGAA+GGG - chr6_3:8050074-8050093 Msa0937030:intron 40.0%
! GTCAATCTTACGAAGGGTAT+AGG - chr6_3:8050080-8050099 Msa0937030:intron 40.0%
CACATGATACATGTACGAGT+CGG + chr6_3:8050132-8050151 None:intergenic 40.0%
TATAACGCAGAACCCCAAAA+AGG - chr6_3:8050266-8050285 Msa0937030:intron 40.0%
! AAATCAAAACTGGACTGGAC+TGG + chr6_3:8050610-8050629 None:intergenic 40.0%
! GTGAGTTTAGGTTAGTTGGT+AGG + chr6_3:8050690-8050709 None:intergenic 40.0%
TAACCTAAACTCACGAGGAT+CGG - chr6_3:8050696-8050715 Msa0937030:intron 40.0%
TGTAGTTGCAAGTCTCTTGT+AGG + chr6_3:8051107-8051126 None:intergenic 40.0%
AATTGATGCTGATAGTCCAG+AGG - chr6_3:8051188-8051207 Msa0937030:five_prime_UTR 40.0%
! GGTGTGCAATTTTCATATGG+CGG - chr6_3:8051348-8051367 Msa0937030:five_prime_UTR 40.0%
! GTGTGCAATTTTCATATGGC+GGG - chr6_3:8051349-8051368 Msa0937030:five_prime_UTR 40.0%
CAATTGCATTGGGAAAGCAG+TGG + chr6_3:8048504-8048523 None:intergenic 45.0%
AAAAGGAGAGGAGGAATGGT+AGG + chr6_3:8048661-8048680 None:intergenic 45.0%
! ATAGTGGAGAAAAGGAGAGG+AGG + chr6_3:8048670-8048689 None:intergenic 45.0%
GAACGTCTATGACGAATCTC+AGG + chr6_3:8048937-8048956 None:intergenic 45.0%
TCGTCATAGACGTTCAGACA+AGG - chr6_3:8048942-8048961 Msa0937030:intron 45.0%
!! TTATACGGCAGAGCTTTGAG+TGG - chr6_3:8049343-8049362 Msa0937030:intron 45.0%
! TTTTATCCCCACTCCTCTCT+TGG - chr6_3:8049957-8049976 Msa0937030:intron 45.0%
TTTAGACCAAGAGAGGAGTG+GGG + chr6_3:8049966-8049985 None:intergenic 45.0%
TGGTCAACCAGACAATGTCA+TGG - chr6_3:8050058-8050077 Msa0937030:intron 45.0%
TGAATGGTGTGGGAACAGTT+TGG + chr6_3:8050107-8050126 None:intergenic 45.0%
GCAGAACCCCAAAAAGGAAA+AGG - chr6_3:8050272-8050291 Msa0937030:intron 45.0%
ACTGCACTGTAACAGTCATG+AGG - chr6_3:8050316-8050335 Msa0937030:intron 45.0%
! CCTCGTGAGTTTAGGTTAGT+TGG + chr6_3:8050694-8050713 None:intergenic 45.0%
CCAACTAACCTAAACTCACG+AGG - chr6_3:8050691-8050710 Msa0937030:intron 45.0%
CCTTTGTCACAAAGGACTAG+TGG + chr6_3:8050989-8051008 None:intergenic 45.0%
CCACTAGTCCTTTGTGACAA+AGG - chr6_3:8050986-8051005 Msa0937030:intron 45.0%
TGTGCAGGTATCAGCATCTA+AGG - chr6_3:8051080-8051099 Msa0937030:CDS 45.0%
GCTAGCTAGAGTGTAGTTTG+AGG - chr6_3:8051327-8051346 Msa0937030:five_prime_UTR 45.0%
!!! TATTTTTCTATTTATATATA+TGG + chr6_3:8048799-8048818 None:intergenic 5.0%
!!! AAAAATTAATTTAACTTATA+CGG - chr6_3:8049328-8049347 Msa0937030:intron 5.0%
!!! TATTATTATTATTATTTTGA+AGG - chr6_3:8050803-8050822 Msa0937030:intron 5.0%
GGAGAAAAGGAGAGGAGGAA+TGG + chr6_3:8048665-8048684 None:intergenic 50.0%
CATGTACGAGTCGGTGTGAA+TGG + chr6_3:8050123-8050142 None:intergenic 50.0%
CATTGGGAAAGCAGTGGCGT+AGG + chr6_3:8048498-8048517 None:intergenic 55.0%
CGAGTCGGTGTGAATGGTGT+GGG + chr6_3:8050117-8050136 None:intergenic 55.0%
ACGAGTCGGTGTGAATGGTG+TGG + chr6_3:8050118-8050137 None:intergenic 55.0%
GGACCGATCCTCGTGAGTTT+AGG + chr6_3:8050702-8050721 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 8048449 8051545 8048449 ID=Msa0937030;Name=Msa0937030
chr6_3 mRNA 8048449 8051545 8048449 ID=Msa0937030-mRNA-1;Parent=Msa0937030;Name=Msa0937030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=392|1|1|1|1|1|2|303|92
chr6_3 exon 8048449 8048907 8048449 ID=Msa0937030-mRNA-1:exon:2643;Parent=Msa0937030-mRNA-1
chr6_3 exon 8051031 8051545 8051031 ID=Msa0937030-mRNA-1:exon:2642;Parent=Msa0937030-mRNA-1
chr6_3 five_prime_UTR 8051154 8051545 8051154 ID=Msa0937030-mRNA-1:five_prime_utr;Parent=Msa0937030-mRNA-1
chr6_3 CDS 8051031 8051153 8051031 ID=Msa0937030-mRNA-1:cds;Parent=Msa0937030-mRNA-1
chr6_3 CDS 8048752 8048907 8048752 ID=Msa0937030-mRNA-1:cds;Parent=Msa0937030-mRNA-1
chr6_3 three_prime_UTR 8048449 8048751 8048449 ID=Msa0937030-mRNA-1:three_prime_utr;Parent=Msa0937030-mRNA-1
Gene Sequence

>Msa0937030

ATGTCTAGCAGAAGGTCAAGGCAACAATCTTCTTCTTCAAGAATTTCTGATGATCAAATCATTGAACTTGTTTCCAAGTTACGTCAACTTGTTCCTGAGATTCGTCATAGACGTTCAGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACTTGCAACTACATAAGAAACTTACATAGAGAAGTTGATGATTTAAGTGAAAGATTATCTCAGTTATTGGTCACAATTGATGCTGATAGTCCAGAGGCTAATATTATCAGAAGCCTAATTAATCAATAA
Protein sequence

>Msa0937030

MSSRRSRQQSSSSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDADSPEANIIRSLINQ*