AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905020 MtrunA17_Chr6g0453041 100.000 92 0 0 1 92 1 92 1.62e-59 176
Msa0905020 MtrunA17_Chr7g0217141 84.946 93 13 1 1 92 1 93 8.23e-48 147
Msa0905020 MtrunA17_Chr5g0416431 68.421 76 24 0 15 90 17 92 4.15e-33 110
Msa0905020 MtrunA17_Chr8g0362131 69.880 83 24 1 8 90 10 91 5.13e-33 109
Msa0905020 MtrunA17_Chr3g0093001 73.077 78 19 1 15 92 17 92 9.80e-33 108
Msa0905020 MtrunA17_Chr7g0237771 49.351 77 36 1 1 77 1 74 6.46e-13 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905020 AT3G28857.1 76.923 91 20 1 1 90 1 91 9.22e-43 134
Msa0905020 AT5G39860.1 75.000 80 19 1 12 90 12 91 3.48e-36 118
Msa0905020 AT1G26945.1 77.333 75 17 0 17 91 19 93 2.25e-35 116
Msa0905020 AT5G15160.1 72.368 76 20 1 17 91 18 93 5.23e-33 110
Msa0905020 AT1G74500.1 67.089 79 23 2 15 92 17 93 2.29e-29 100
Msa0905020 AT3G47710.1 61.702 94 32 3 1 92 1 92 7.58e-29 99.8

Find 43 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTCATTTGTATCTTCT+TGG 0.134498 6_2:-2890986 Msa0905020:five_prime_UTR
TTGTACCCTTCCTTCATTTA+TGG 0.173413 6_2:-2891190 Msa0905020:five_prime_UTR
CTAAAGCTTATTGATTAATT+AGG 0.226540 6_2:+2888493 None:intergenic
ATTTAACAAGTGATACATTT+TGG 0.241523 6_2:+2888264 None:intergenic
AGAAAGTAACAACAATTAAT+TGG 0.254555 6_2:+2891018 None:intergenic
AAGTGATAAGAGAGATATAA+AGG 0.275102 6_2:+2891155 None:intergenic
TGAAAGATTATCTCAGTTAT+TGG 0.286390 6_2:-2888559 Msa0905020:CDS
TAGGATGTTGCTAAGTAAAA+TGG 0.319043 6_2:+2891271 None:intergenic
CTTGTTAAATCTATTAATTA+AGG 0.323166 6_2:-2888251 Msa0905020:three_prime_UTR
TGTAGTTGCAAGTCTCTTGT+AGG 0.341927 6_2:+2888616 None:intergenic
GAGAGATGAGCCTAAAATAT+TGG 0.345392 6_2:+2891295 None:intergenic
AGAGATATAAAGGGAGAGAA+AGG 0.390071 6_2:+2891165 None:intergenic
AATATGACACATGGATATAT+AGG 0.392084 6_2:+2888296 None:intergenic
AGGAACAAGTTGACGTAACT+TGG 0.402465 6_2:+2890833 None:intergenic
CCATGTGTCATATTTATAGA+TGG 0.409090 6_2:-2888287 Msa0905020:three_prime_UTR
AGTGATAAGAGAGATATAAA+GGG 0.412697 6_2:+2891156 None:intergenic
TGTGCAGGTATCAGCATCTA+AGG 0.416549 6_2:-2888640 Msa0905020:intron
TTGAAGCAAACAATTGCATT+GGG 0.420570 6_2:+2891236 None:intergenic
CAAGCTATATAGTGGAGAAA+AGG 0.438595 6_2:+2891072 None:intergenic
TTTGAAGCAAACAATTGCAT+TGG 0.440035 6_2:+2891235 None:intergenic
GAAGTAGAGTTAAAAGCTAT+AGG 0.445526 6_2:+2891113 None:intergenic
AAAAGGAGAGGAGGAATGGT+AGG 0.449810 6_2:+2891089 None:intergenic
GGAGAAAAGGAGAGGAGGAA+TGG 0.452365 6_2:+2891085 None:intergenic
ACAAAAGACAAGCTATATAG+TGG 0.459591 6_2:+2891064 None:intergenic
GAACGTCTATGACGAATCTC+AGG 0.523567 6_2:+2890813 None:intergenic
CTTCTGATAATATTAGCCTC+TGG 0.544212 6_2:+2888516 None:intergenic
GAGATATAAAGGGAGAGAAA+GGG 0.548125 6_2:+2891166 None:intergenic
TAACCAAGAAGATACAAATG+AGG 0.550806 6_2:+2890983 None:intergenic
GCTAGCTAGAGTGTAGTTTG+AGG 0.561721 6_2:-2888393 Msa0905020:three_prime_UTR
CATTGGGAAAGCAGTGGCGT+AGG 0.572730 6_2:+2891252 None:intergenic
AAGGGACCATAAATGAAGGA+AGG 0.578025 6_2:+2891184 None:intergenic
GAGAAAGGGACCATAAATGA+AGG 0.578289 6_2:+2891180 None:intergenic
ATAGTGGAGAAAAGGAGAGG+AGG 0.581549 6_2:+2891080 None:intergenic
CCATCTATAAATATGACACA+TGG 0.592729 6_2:+2888287 None:intergenic
TATATAGTGGAGAAAAGGAG+AGG 0.597974 6_2:+2891077 None:intergenic
CATAATATATACCTAGATGT+TGG 0.599785 6_2:+2890926 None:intergenic
AGGGACCATAAATGAAGGAA+GGG 0.600605 6_2:+2891185 None:intergenic
TATATATTATGTCTAGCAGA+AGG 0.605924 6_2:-2890914 Msa0905020:exon
AACCAAGAAGATACAAATGA+GGG 0.624359 6_2:+2890984 None:intergenic
TTATGTCTAGCAGAAGGTCA+AGG 0.634096 6_2:-2890908 Msa0905020:CDS
TCGTCATAGACGTTCAGACA+AGG 0.661917 6_2:-2890805 Msa0905020:intron
CAATTGCATTGGGAAAGCAG+TGG 0.712328 6_2:+2891246 None:intergenic
AATTGATGCTGATAGTCCAG+AGG 0.714162 6_2:-2888532 Msa0905020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAAAAAAAAATAT+AGG - chr6_2:2888911-2888930 Msa0905020:intron 0.0%
!!! TTATATTTTCATATATAACT+AGG - chr6_2:2888859-2888878 Msa0905020:intron 10.0%
!! AAGAAATTAACATAATATTA+TGG - chr6_2:2888981-2889000 Msa0905020:intron 10.0%
!! AGAAATTAACATAATATTAT+GGG - chr6_2:2888982-2889001 Msa0905020:intron 10.0%
!! TTTAAAGGATATATATTATA+GGG + chr6_2:2889466-2889485 None:intergenic 10.0%
!!! TTTTAAAGGATATATATTAT+AGG + chr6_2:2889467-2889486 None:intergenic 10.0%
!!! TTTTATTGATTTATTTACTT+TGG + chr6_2:2890286-2890305 None:intergenic 10.0%
!! TTATTCATAATTTATGAATA+TGG - chr6_2:2890705-2890724 Msa0905020:intron 10.0%
!!! AATTAATTGGTTTATTTTGT+TGG + chr6_2:2888466-2888485 None:intergenic 15.0%
!! AAAAACTAACATAAAAACTA+AGG + chr6_2:2888731-2888750 None:intergenic 15.0%
!!! TTAGTTTTTATGTTAGTTTT+TGG - chr6_2:2888730-2888749 Msa0905020:intron 15.0%
!!! TAGTTTTTATGTTAGTTTTT+GGG - chr6_2:2888731-2888750 Msa0905020:intron 15.0%
!! TAATAACATATGTTAAGAAA+AGG + chr6_2:2888825-2888844 None:intergenic 15.0%
!! TATATCATAACAATAGTAAA+TGG - chr6_2:2889032-2889051 Msa0905020:intron 15.0%
!!! CAATAAATATTTTCAATCAA+TGG - chr6_2:2889604-2889623 Msa0905020:intron 15.0%
!! TTTATGTAACTAATCAAAAT+TGG + chr6_2:2890473-2890492 None:intergenic 15.0%
!!! TTTGATTAGTTACATAAAAA+TGG - chr6_2:2890475-2890494 Msa0905020:intron 15.0%
!! CTTGTTAAATCTATTAATTA+AGG - chr6_2:2891243-2891262 Msa0905020:five_prime_UTR 15.0%
!! AGAAAGTAACAACAATTAAT+TGG + chr6_2:2888479-2888498 None:intergenic 20.0%
!! AAAAGGAAAATATTGTTAGT+GGG + chr6_2:2888808-2888827 None:intergenic 20.0%
!! ACATAAAACCAAGTTTAATT+TGG - chr6_2:2888935-2888954 Msa0905020:intron 20.0%
!! ATTAACATAATATTATGGGT+AGG - chr6_2:2888986-2889005 Msa0905020:intron 20.0%
!! AGACTACTAAAATATAACAT+TGG + chr6_2:2889259-2889278 None:intergenic 20.0%
!! CTTAAAAATATAACGTAAAG+TGG - chr6_2:2889353-2889372 Msa0905020:intron 20.0%
!!! AGCATTTTTCAACTTTTTAA+AGG + chr6_2:2889481-2889500 None:intergenic 20.0%
!!! AATCGTTAACATGTATTTTA+AGG + chr6_2:2889513-2889532 None:intergenic 20.0%
!! CATTAGTAGAAATTATGTTA+TGG - chr6_2:2889534-2889553 Msa0905020:intron 20.0%
!! CGATCTTTGATAAAATAAAT+TGG + chr6_2:2889569-2889588 None:intergenic 20.0%
!! AATTAACAATAACATGTGTA+GGG - chr6_2:2889655-2889674 Msa0905020:intron 20.0%
!!! CTATAATAATATAGCCTTAT+AGG + chr6_2:2889769-2889788 None:intergenic 20.0%
!!! TAATAATGAGAAACGTTTTT+TGG - chr6_2:2889929-2889948 Msa0905020:intron 20.0%
!!! TTTAAAACCTTTTCCTTTTT+GGG + chr6_2:2890030-2890049 None:intergenic 20.0%
!!! AAGGTTTTAAAGGTAAAAAA+AGG - chr6_2:2890039-2890058 Msa0905020:intron 20.0%
!! TAAAATAATGTTCGTACTTA+GGG + chr6_2:2890210-2890229 None:intergenic 20.0%
!! ATAAAATAATGTTCGTACTT+AGG + chr6_2:2890211-2890230 None:intergenic 20.0%
!! ATACAACTACAATAAAATCA+TGG - chr6_2:2890229-2890248 Msa0905020:intron 20.0%
!! CACAAAAAAAAAATCAAAAC+TGG + chr6_2:2890371-2890390 None:intergenic 20.0%
!!! CAGTTTTGATTTTTTTTTTG+TGG - chr6_2:2890369-2890388 Msa0905020:intron 20.0%
!! CATAATATATGTAAGATTAG+GGG + chr6_2:2890410-2890429 None:intergenic 20.0%
!! GCATAATATATGTAAGATTA+GGG + chr6_2:2890411-2890430 None:intergenic 20.0%
!! TGCATAATATATGTAAGATT+AGG + chr6_2:2890412-2890431 None:intergenic 20.0%
!!! CTAAAGCTTATTGATTAATT+AGG + chr6_2:2891004-2891023 None:intergenic 20.0%
!!! ATTTAACAAGTGATACATTT+TGG + chr6_2:2891233-2891252 None:intergenic 20.0%
! AGTGATAAGAGAGATATAAA+GGG + chr6_2:2888341-2888360 None:intergenic 25.0%
! AAGTGATAAGAGAGATATAA+AGG + chr6_2:2888342-2888361 None:intergenic 25.0%
! CATAATATATACCTAGATGT+TGG + chr6_2:2888571-2888590 None:intergenic 25.0%
! TATATATTATGTCTAGCAGA+AGG - chr6_2:2888580-2888599 Msa0905020:CDS 25.0%
! GAAAAGGAAAATATTGTTAG+TGG + chr6_2:2888809-2888828 None:intergenic 25.0%
!!! AAAACCAAGTTTAATTTGGA+AGG - chr6_2:2888939-2888958 Msa0905020:intron 25.0%
!!! AAACCAAGTTTAATTTGGAA+GGG - chr6_2:2888940-2888959 Msa0905020:intron 25.0%
! ATAACAATAGTAAATGGTCA+AGG - chr6_2:2889038-2889057 Msa0905020:intron 25.0%
! TAACAATAGTAAATGGTCAA+GGG - chr6_2:2889039-2889058 Msa0905020:intron 25.0%
! AAACAATGATAAGGATCTTA+CGG + chr6_2:2889286-2889305 None:intergenic 25.0%
! TTCATTAAACAATGTTACCA+GGG + chr6_2:2889317-2889336 None:intergenic 25.0%
! ATTCATTAAACAATGTTACC+AGG + chr6_2:2889318-2889337 None:intergenic 25.0%
! ATTGTTAATTCGTGTCTTTA+CGG + chr6_2:2889645-2889664 None:intergenic 25.0%
! GAATTAACAATAACATGTGT+AGG - chr6_2:2889654-2889673 Msa0905020:intron 25.0%
! GTCTAAAAAAAATGGCTTAT+TGG - chr6_2:2889727-2889746 Msa0905020:intron 25.0%
! GTATGTAATAAAAGCCTATA+AGG - chr6_2:2889752-2889771 Msa0905020:intron 25.0%
! TAGAAACATATCTAAGAACT+TGG - chr6_2:2889786-2889805 Msa0905020:intron 25.0%
!! TTAAAACCTTTTCCTTTTTG+GGG + chr6_2:2890029-2890048 None:intergenic 25.0%
!!! CTTTAAAACCTTTTCCTTTT+TGG + chr6_2:2890031-2890050 None:intergenic 25.0%
!!! CAAAAAGGAAAAGGTTTTAA+AGG - chr6_2:2890029-2890048 Msa0905020:intron 25.0%
!! TGTACAAACACATCAATTTT+TGG - chr6_2:2890152-2890171 Msa0905020:intron 25.0%
! TTTAGGTCTCATATTATGTT+CGG - chr6_2:2890335-2890354 Msa0905020:intron 25.0%
! AAAAAAAATCAAAACTGGAC+TGG + chr6_2:2890366-2890385 None:intergenic 25.0%
! TCATAATTTATGAATATGGC+AGG - chr6_2:2890709-2890728 Msa0905020:intron 25.0%
! TGAAAGATTATCTCAGTTAT+TGG - chr6_2:2890935-2890954 Msa0905020:five_prime_UTR 25.0%
!!! AGAGTGTACTTTATTTTAGA+TGG - chr6_2:2891078-2891097 Msa0905020:five_prime_UTR 25.0%
!!! GAGTGTACTTTATTTTAGAT+GGG - chr6_2:2891079-2891098 Msa0905020:five_prime_UTR 25.0%
! AATATGACACATGGATATAT+AGG + chr6_2:2891201-2891220 None:intergenic 25.0%
TAGGATGTTGCTAAGTAAAA+TGG + chr6_2:2888226-2888245 None:intergenic 30.0%
TTGAAGCAAACAATTGCATT+GGG + chr6_2:2888261-2888280 None:intergenic 30.0%
! TTTGAAGCAAACAATTGCAT+TGG + chr6_2:2888262-2888281 None:intergenic 30.0%
GAAGTAGAGTTAAAAGCTAT+AGG + chr6_2:2888384-2888403 None:intergenic 30.0%
ACAAAAGACAAGCTATATAG+TGG + chr6_2:2888433-2888452 None:intergenic 30.0%
AACCAAGAAGATACAAATGA+GGG + chr6_2:2888513-2888532 None:intergenic 30.0%
TAACCAAGAAGATACAAATG+AGG + chr6_2:2888514-2888533 None:intergenic 30.0%
AGAAAAATACACCAACATCT+AGG - chr6_2:2888557-2888576 Msa0905020:CDS 30.0%
TATCCCTTCCAAATTAAACT+TGG + chr6_2:2888946-2888965 None:intergenic 30.0%
AATGCTCTTTAAATTTGACG+AGG + chr6_2:2889180-2889199 None:intergenic 30.0%
! GCACTTGTTAAACAATGATA+AGG + chr6_2:2889295-2889314 None:intergenic 30.0%
AAATGCTAACAAGTGTCTTA+GGG + chr6_2:2889443-2889462 None:intergenic 30.0%
!!! CATTTTTTTTAGACCAAGAG+AGG + chr6_2:2889721-2889740 None:intergenic 30.0%
CTCTCTTGGTCTAAAAAAAA+TGG - chr6_2:2889719-2889738 Msa0905020:intron 30.0%
TGATAATCATATCTCGCTTT+AGG - chr6_2:2890318-2890337 Msa0905020:intron 30.0%
! ACTGACTAATTTTATTGTGC+AGG - chr6_2:2890839-2890858 Msa0905020:CDS 30.0%
CCATCTATAAATATGACACA+TGG + chr6_2:2891210-2891229 None:intergenic 30.0%
CCATGTGTCATATTTATAGA+TGG - chr6_2:2891207-2891226 Msa0905020:five_prime_UTR 30.0%
GAGAGATGAGCCTAAAATAT+TGG + chr6_2:2888202-2888221 None:intergenic 35.0%
TTGTACCCTTCCTTCATTTA+TGG - chr6_2:2888304-2888323 Msa0905020:three_prime_UTR 35.0%
GAGATATAAAGGGAGAGAAA+GGG + chr6_2:2888331-2888350 None:intergenic 35.0%
AGAGATATAAAGGGAGAGAA+AGG + chr6_2:2888332-2888351 None:intergenic 35.0%
! TATATAGTGGAGAAAAGGAG+AGG + chr6_2:2888420-2888439 None:intergenic 35.0%
! CAAGCTATATAGTGGAGAAA+AGG + chr6_2:2888425-2888444 None:intergenic 35.0%
!!! TCAAAGGAGTTTTAAGCAAG+AGG + chr6_2:2888772-2888791 None:intergenic 35.0%
GGGTTAAGAGACATTATCAA+AGG + chr6_2:2888788-2888807 None:intergenic 35.0%
TAATTTGGAAGGGATAGTCT+AGG - chr6_2:2888950-2888969 Msa0905020:intron 35.0%
TCTTGAAGCTCATGAAAATC+AGG - chr6_2:2889150-2889169 Msa0905020:intron 35.0%
AACATTGGCGACAAATAATG+TGG + chr6_2:2889244-2889263 None:intergenic 35.0%
GAAATGCTAACAAGTGTCTT+AGG + chr6_2:2889444-2889463 None:intergenic 35.0%
AGTGGGGATAAAACTTTGTT+GGG + chr6_2:2889698-2889717 None:intergenic 35.0%
TAACAGTCATGAGGTAATTG+TGG - chr6_2:2890073-2890092 Msa0905020:intron 35.0%
! TGAGTTTAGGTTAGTTGGTA+GGG + chr6_2:2890439-2890458 None:intergenic 35.0%
TATACTGTCCTTTGTCACAA+AGG + chr6_2:2890771-2890790 None:intergenic 35.0%
! CTTCTGATAATATTAGCCTC+TGG + chr6_2:2890981-2891000 None:intergenic 35.0%
! TGAGGTGTGCAATTTTCATA+TGG - chr6_2:2891119-2891138 Msa0905020:five_prime_UTR 35.0%
!!! ATATGGCGGGTATATTTTGA+AGG - chr6_2:2891136-2891155 Msa0905020:five_prime_UTR 35.0%
AGGGACCATAAATGAAGGAA+GGG + chr6_2:2888312-2888331 None:intergenic 40.0%
AAGGGACCATAAATGAAGGA+AGG + chr6_2:2888313-2888332 None:intergenic 40.0%
GAGAAAGGGACCATAAATGA+AGG + chr6_2:2888317-2888336 None:intergenic 40.0%
CTCCCTCATTTGTATCTTCT+TGG - chr6_2:2888508-2888527 Msa0905020:CDS 40.0%
TTATGTCTAGCAGAAGGTCA+AGG - chr6_2:2888586-2888605 Msa0905020:CDS 40.0%
! AGGAACAAGTTGACGTAACT+TGG + chr6_2:2888664-2888683 None:intergenic 40.0%
TCATTGTTTAACAAGTGCCC+TGG - chr6_2:2889297-2889316 Msa0905020:intron 40.0%
GAGTGGGGATAAAACTTTGT+TGG + chr6_2:2889699-2889718 None:intergenic 40.0%
! TTTTAGACCAAGAGAGGAGT+GGG + chr6_2:2889715-2889734 None:intergenic 40.0%
! TTTTTAGACCAAGAGAGGAG+TGG + chr6_2:2889716-2889735 None:intergenic 40.0%
AGATTGACCATGACATTGTC+TGG + chr6_2:2889816-2889835 None:intergenic 40.0%
TGTCATGGTCAATCTTACGA+AGG - chr6_2:2889821-2889840 Msa0905020:intron 40.0%
GTCATGGTCAATCTTACGAA+GGG - chr6_2:2889822-2889841 Msa0905020:intron 40.0%
! GTCAATCTTACGAAGGGTAT+AGG - chr6_2:2889828-2889847 Msa0905020:intron 40.0%
CACATGATACATGTACGAGT+CGG + chr6_2:2889880-2889899 None:intergenic 40.0%
TATAACGCAGAACCCCAAAA+AGG - chr6_2:2890014-2890033 Msa0905020:intron 40.0%
! AAATCAAAACTGGACTGGAC+TGG + chr6_2:2890361-2890380 None:intergenic 40.0%
! GTGAGTTTAGGTTAGTTGGT+AGG + chr6_2:2890440-2890459 None:intergenic 40.0%
TAACCTAAACTCACGAGGAT+CGG - chr6_2:2890446-2890465 Msa0905020:intron 40.0%
TGTAGTTGCAAGTCTCTTGT+AGG + chr6_2:2890881-2890900 None:intergenic 40.0%
AATTGATGCTGATAGTCCAG+AGG - chr6_2:2890962-2890981 Msa0905020:five_prime_UTR 40.0%
! GGTGTGCAATTTTCATATGG+CGG - chr6_2:2891122-2891141 Msa0905020:five_prime_UTR 40.0%
! GTGTGCAATTTTCATATGGC+GGG - chr6_2:2891123-2891142 Msa0905020:five_prime_UTR 40.0%
CAATTGCATTGGGAAAGCAG+TGG + chr6_2:2888251-2888270 None:intergenic 45.0%
AAAAGGAGAGGAGGAATGGT+AGG + chr6_2:2888408-2888427 None:intergenic 45.0%
! ATAGTGGAGAAAAGGAGAGG+AGG + chr6_2:2888417-2888436 None:intergenic 45.0%
GAACGTCTATGACGAATCTC+AGG + chr6_2:2888684-2888703 None:intergenic 45.0%
TCGTCATAGACGTTCAGACA+AGG - chr6_2:2888689-2888708 Msa0905020:intron 45.0%
!! TTATACGGCAGAGCTTTGAG+TGG - chr6_2:2889091-2889110 Msa0905020:intron 45.0%
! TTTTATCCCCACTCCTCTCT+TGG - chr6_2:2889705-2889724 Msa0905020:intron 45.0%
TTTAGACCAAGAGAGGAGTG+GGG + chr6_2:2889714-2889733 None:intergenic 45.0%
TGGTCAACCAGACAATGTCA+TGG - chr6_2:2889806-2889825 Msa0905020:intron 45.0%
TGAATGGTGTGGGAACAGTT+TGG + chr6_2:2889855-2889874 None:intergenic 45.0%
GCAGAACCCCAAAAAGGAAA+AGG - chr6_2:2890020-2890039 Msa0905020:intron 45.0%
ACTGCACTGTAACAGTCATG+AGG - chr6_2:2890064-2890083 Msa0905020:intron 45.0%
! CCTCGTGAGTTTAGGTTAGT+TGG + chr6_2:2890444-2890463 None:intergenic 45.0%
CCAACTAACCTAAACTCACG+AGG - chr6_2:2890441-2890460 Msa0905020:intron 45.0%
CCTTTGTCACAAAGGACTAG+TGG + chr6_2:2890763-2890782 None:intergenic 45.0%
CCACTAGTCCTTTGTGACAA+AGG - chr6_2:2890760-2890779 Msa0905020:intron 45.0%
TGTGCAGGTATCAGCATCTA+AGG - chr6_2:2890854-2890873 Msa0905020:CDS 45.0%
GCTAGCTAGAGTGTAGTTTG+AGG - chr6_2:2891101-2891120 Msa0905020:five_prime_UTR 45.0%
!!! TATTTTTCTATTTATATATA+TGG + chr6_2:2888546-2888565 None:intergenic 5.0%
!!! AAAAATTAATTTAACTTATA+CGG - chr6_2:2889076-2889095 Msa0905020:intron 5.0%
!!! TATTATTATTATTATTTTGA+AGG - chr6_2:2890553-2890572 Msa0905020:intron 5.0%
GGAGAAAAGGAGAGGAGGAA+TGG + chr6_2:2888412-2888431 None:intergenic 50.0%
CATGTACGAGTCGGTGTGAA+TGG + chr6_2:2889871-2889890 None:intergenic 50.0%
CATTGGGAAAGCAGTGGCGT+AGG + chr6_2:2888245-2888264 None:intergenic 55.0%
CGAGTCGGTGTGAATGGTGT+GGG + chr6_2:2889865-2889884 None:intergenic 55.0%
ACGAGTCGGTGTGAATGGTG+TGG + chr6_2:2889866-2889885 None:intergenic 55.0%
GGACCGATCCTCGTGAGTTT+AGG + chr6_2:2890452-2890471 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 2888197 2891319 2888197 ID=Msa0905020;Name=Msa0905020
chr6_2 mRNA 2888197 2891319 2888197 ID=Msa0905020-mRNA-1;Parent=Msa0905020;Name=Msa0905020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=391|1|1|1|1|1|2|303|92
chr6_2 exon 2888197 2888655 2888197 ID=Msa0905020-mRNA-1:exon:925;Parent=Msa0905020-mRNA-1
chr6_2 exon 2890806 2891319 2890806 ID=Msa0905020-mRNA-1:exon:924;Parent=Msa0905020-mRNA-1
chr6_2 five_prime_UTR 2890929 2891319 2890929 ID=Msa0905020-mRNA-1:five_prime_utr;Parent=Msa0905020-mRNA-1
chr6_2 CDS 2890806 2890928 2890806 ID=Msa0905020-mRNA-1:cds;Parent=Msa0905020-mRNA-1
chr6_2 CDS 2888500 2888655 2888500 ID=Msa0905020-mRNA-1:cds;Parent=Msa0905020-mRNA-1
chr6_2 three_prime_UTR 2888197 2888499 2888197 ID=Msa0905020-mRNA-1:three_prime_utr;Parent=Msa0905020-mRNA-1
Gene Sequence

>Msa0905020

ATGTCTAGCAGAAGGTCAAGGCAACAATCTTCTTCTTCAAGAATTTCTGATGATCAAATCATTGAACTTGTTTCCAAGTTACGTCAACTTGTTCCTGAGATTCGTCATAGACGTTCAGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACTTGCAACTACATAAGAAACTTACATAGAGAAGTTGATGATTTAAGTGAAAGATTATCTCAGTTATTGGTCACAATTGATGCTGATAGTCCAGAGGCTAATATTATCAGAAGCCTAATTAATCAATAA
Protein sequence

>Msa0905020

MSSRRSRQQSSSSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDADSPEANIIRSLINQ*