AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937980 MtrunA17_Chr6g0453791 93.143 175 12 0 1 175 1 175 2.49e-120 337
Msa0937980 MtrunA17_Chr5g0440711 64.762 105 36 1 34 137 33 137 1.07e-45 147
Msa0937980 MtrunA17_Chr3g0144921 55.462 119 52 1 28 145 27 145 6.17e-44 143
Msa0937980 MtrunA17_Chr5g0440804 52.800 125 57 2 31 153 29 153 7.03e-44 143
Msa0937980 MtrunA17_Chr6g0453921 42.424 165 86 4 9 167 17 178 7.53e-33 115
Msa0937980 MtrunA17_Chr5g0440791 52.688 93 43 1 62 153 16 108 5.85e-30 106
Msa0937980 MtrunA17_Chr6g0453801 41.538 130 72 2 4 132 11 137 1.37e-26 99.4
Msa0937980 MtrunA17_Chr4g0001571 34.615 130 74 2 31 150 29 157 4.61e-22 87.4
Msa0937980 MtrunA17_Chr6g0481491 39.024 123 68 5 6 127 7 123 1.12e-14 68.9
Msa0937980 MtrunA17_Chr5g0394321 27.381 168 107 5 1 162 4 162 1.92e-14 67.8
Msa0937980 MtrunA17_Chr2g0323021 36.434 129 70 7 31 152 25 148 1.07e-13 66.6
Msa0937980 MtrunA17_Chr6g0459441 37.113 97 59 2 31 126 26 121 1.97e-13 65.1
Msa0937980 MtrunA17_Chr7g0253701 32.773 119 69 4 1 116 1 111 3.81e-12 61.2
Msa0937980 MtrunA17_Chr7g0253671 32.773 119 69 4 1 116 1 111 3.81e-12 61.2
Msa0937980 MtrunA17_Chr1g0205701 31.000 100 65 3 30 126 24 122 4.67e-12 61.6
Msa0937980 MtrunA17_Chr8g0335531 30.864 162 92 5 33 175 26 186 5.45e-12 61.2
Msa0937980 MtrunA17_Chr8g0360371 34.545 110 68 3 33 139 26 134 7.37e-12 62.4
Msa0937980 MtrunA17_Chr3g0125761 28.696 115 79 2 12 126 14 125 1.04e-11 59.3
Msa0937980 MtrunA17_Chr7g0253681 32.773 119 70 4 1 116 1 112 1.42e-11 59.7
Msa0937980 MtrunA17_Chr3g0132701 33.898 118 72 4 16 128 8 124 3.56e-11 59.7
Msa0937980 MtrunA17_Chr8g0335571 40.206 97 53 4 33 126 26 120 4.62e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937980 AT2G27035.1 46.565 131 65 2 22 151 19 145 6.38e-39 130
Msa0937980 AT5G15350.1 46.809 141 69 3 7 146 6 141 7.02e-35 120
Msa0937980 AT4G12880.1 48.780 123 61 2 6 127 5 126 9.38e-32 111
Msa0937980 AT3G01070.1 41.732 127 70 3 4 128 2 126 1.87e-19 80.9
Msa0937980 AT3G27200.1 34.959 123 74 3 5 126 4 121 1.14e-15 71.2
Msa0937980 AT2G32300.1 32.540 126 79 3 31 151 26 150 2.38e-15 72.0
Msa0937980 AT4G12880.2 52.174 69 32 1 60 127 20 88 3.52e-15 68.2
Msa0937980 AT2G32300.2 32.540 126 79 3 31 151 56 180 5.49e-15 71.2
Msa0937980 AT3G17675.1 31.034 116 78 2 12 126 13 127 2.59e-13 63.9
Msa0937980 AT2G26720.1 34.711 121 70 5 23 136 22 140 2.86e-13 65.5
Msa0937980 AT2G31050.1 39.423 104 56 4 27 126 25 125 3.66e-13 65.1
Msa0937980 AT5G26330.1 29.508 122 81 4 9 126 1 121 2.01e-12 62.8

Find 50 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAGAATTGACAATTATT+TGG 0.188111 6_3:-9495218 Msa0937980:three_prime_UTR
TGGGCATGGATTATAAATTA+AGG 0.235651 6_3:-9495198 Msa0937980:three_prime_UTR
TTTGATGGTGAGTGTGGTTT+TGG 0.261977 6_3:-9497050 Msa0937980:CDS
CCATCAATGTATAAATGCTT+TGG 0.298696 6_3:-9495305 Msa0937980:CDS
CCAAAGCATTTATACATTGA+TGG 0.310772 6_3:+9495305 None:intergenic
TAAAGAATTGACAATTATTT+GGG 0.325324 6_3:-9495217 Msa0937980:three_prime_UTR
AGAATGTCAACTACACTAAA+TGG 0.326899 6_3:-9496949 Msa0937980:CDS
CATCAATGTATAAATGCTTT+GGG 0.352459 6_3:-9495304 Msa0937980:CDS
GGTGGAGGTTACTGCTTTCA+TGG 0.363773 6_3:-9495422 Msa0937980:CDS
GACATTCTGATTCCAACCTT+TGG 0.366517 6_3:+9496964 None:intergenic
AGCATAGAAAGAATTGTGTT+TGG 0.386879 6_3:-9497125 Msa0937980:five_prime_UTR
CCTCCCACCTTATGAAGCTT+TGG 0.418516 6_3:+9496989 None:intergenic
TCTTGTCAAGTTTCTTATGA+AGG 0.439117 6_3:+9495499 None:intergenic
ATTGTGGCCAATGGTGGTCA+TGG 0.472414 6_3:-9497017 Msa0937980:CDS
AGAGAGAATTTCTAAAGTGA+TGG 0.476216 6_3:-9497089 Msa0937980:exon
CAAAAGATACTACAACGTAT+TGG 0.479223 6_3:-9495561 Msa0937980:CDS
AAATGTTGTTTATGTGAGCT+TGG 0.487197 6_3:-9495270 Msa0937980:CDS
GGACCTCCCATGACCACCAT+TGG 0.487403 6_3:+9497010 None:intergenic
AATTGACAATTATTTGGGCA+TGG 0.488865 6_3:-9495212 Msa0937980:three_prime_UTR
TTGTGGCCAATGGTGGTCAT+GGG 0.494982 6_3:-9497016 Msa0937980:CDS
TCGCGATGTGGTTCAATTGA+CGG 0.504641 6_3:-9495471 Msa0937980:CDS
AACATATATTCAAGCAAACA+TGG 0.516944 6_3:+9495093 None:intergenic
TACTACTTTATCACCGGTGG+AGG 0.525846 6_3:-9495437 Msa0937980:CDS
GGGAGGTCCAAAGCTTCATA+AGG 0.541271 6_3:-9496996 Msa0937980:CDS
AGTGTTGTCATTGTGGCCAA+TGG 0.543550 6_3:-9497026 Msa0937980:CDS
TTCATTGTATCAGAAAGAGA+TGG 0.552490 6_3:+9495350 None:intergenic
GAAAGAGATGGAGATGGTGC+AGG 0.556485 6_3:+9495362 None:intergenic
AGCATGTCTATGTTGGTGAT+TGG 0.563002 6_3:-9496916 Msa0937980:CDS
TTGATGTTCTTGAACGTCCA+CGG 0.563672 6_3:+9495388 None:intergenic
TCTCAAGAGCATGTCTATGT+TGG 0.570965 6_3:-9496923 Msa0937980:CDS
TGGCCAATGGTGGTCATGGG+AGG 0.572145 6_3:-9497013 Msa0937980:CDS
CATAAGGTGGGAGGATCCAA+AGG 0.579599 6_3:-9496980 Msa0937980:CDS
GTTGTCATTGTGGCCAATGG+TGG 0.582644 6_3:-9497023 Msa0937980:CDS
ATAAGAAACTTGACAAGAGG+TGG 0.589525 6_3:-9495494 Msa0937980:CDS
AGGTGGGAGGATCCAAAGGT+TGG 0.592986 6_3:-9496976 Msa0937980:CDS
ATGAAAGCAGTAACCTCCAC+CGG 0.596550 6_3:+9495424 None:intergenic
TTCATAAGAAACTTGACAAG+AGG 0.597109 6_3:-9495497 Msa0937980:CDS
AGGTCCAAAGCTTCATAAGG+TGG 0.599406 6_3:-9496993 Msa0937980:CDS
AAGACATACTACTTTATCAC+CGG 0.609394 6_3:-9495443 Msa0937980:CDS
ACATACTACTTTATCACCGG+TGG 0.610826 6_3:-9495440 Msa0937980:CDS
GTATTGGAAGTGAACAAGAC+AGG 0.615002 6_3:-9495545 Msa0937980:CDS
TCTGATACAATGAAATCTAG+TGG 0.617662 6_3:-9495341 Msa0937980:CDS
TCATGGAATGAAAGTTGCCG+TGG 0.625731 6_3:-9495405 Msa0937980:CDS
GACAAGAGGTGGTCGCGATG+TGG 0.637295 6_3:-9495483 Msa0937980:CDS
ACATATATTCAAGCAAACAT+GGG 0.639656 6_3:+9495094 None:intergenic
GGTCCAAAGCTTCATAAGGT+GGG 0.645031 6_3:-9496992 Msa0937980:CDS
GTATCAGAAAGAGATGGAGA+TGG 0.657311 6_3:+9495356 None:intergenic
CCAAAGCTTCATAAGGTGGG+AGG 0.659873 6_3:-9496989 Msa0937980:CDS
GATACAATGAAATCTAGTGG+TGG 0.676277 6_3:-9495338 Msa0937980:CDS
CGATGTGGTTCAATTGACGG+AGG 0.705107 6_3:-9495468 Msa0937980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAACTATCATATAATGT+TGG - chr6_3:9495659-9495678 Msa0937980:intron 15.0%
!!! TTATGAACTATGATAATTTT+TGG - chr6_3:9495718-9495737 Msa0937980:intron 15.0%
!! AATAAAAGAGAAAAAGTTAA+AGG - chr6_3:9496246-9496265 Msa0937980:intron 15.0%
!! TCTACTATAAATCTATAATA+TGG + chr6_3:9496516-9496535 None:intergenic 15.0%
!! TAAAGAATTGACAATTATTT+GGG - chr6_3:9497040-9497059 Msa0937980:CDS 15.0%
!! AATTAACTATCATATAATGT+TGG - chr6_3:9495659-9495678 Msa0937980:intron 15.0%
!!! TTATGAACTATGATAATTTT+TGG - chr6_3:9495718-9495737 Msa0937980:intron 15.0%
!! AATAAAAGAGAAAAAGTTAA+AGG - chr6_3:9496246-9496265 Msa0937980:intron 15.0%
!! TCTACTATAAATCTATAATA+TGG + chr6_3:9496516-9496535 None:intergenic 15.0%
!! TAAAGAATTGACAATTATTT+GGG - chr6_3:9497040-9497059 Msa0937980:CDS 15.0%
!!! CTTTTGTTTTTACAAACTTT+GGG + chr6_3:9495881-9495900 None:intergenic 20.0%
!! ACAAATCAATAAATGAGAAA+AGG + chr6_3:9495975-9495994 None:intergenic 20.0%
!! ACAATGTTAAAGTTTGAAAA+CGG + chr6_3:9496026-9496045 None:intergenic 20.0%
!!! TCTTAAAGTTTTTTTTTACG+TGG - chr6_3:9496178-9496197 Msa0937980:intron 20.0%
!!! CTTAAAGTTTTTTTTTACGT+GGG - chr6_3:9496179-9496198 Msa0937980:intron 20.0%
!! GTAAAGAATTGACAATTATT+TGG - chr6_3:9497039-9497058 Msa0937980:CDS 20.0%
!!! AATACATGTTACTTTTTCTT+AGG - chr6_3:9497119-9497138 Msa0937980:five_prime_UTR 20.0%
!!! CTTTTGTTTTTACAAACTTT+GGG + chr6_3:9495881-9495900 None:intergenic 20.0%
!! ACAAATCAATAAATGAGAAA+AGG + chr6_3:9495975-9495994 None:intergenic 20.0%
!! ACAATGTTAAAGTTTGAAAA+CGG + chr6_3:9496026-9496045 None:intergenic 20.0%
!!! TCTTAAAGTTTTTTTTTACG+TGG - chr6_3:9496178-9496197 Msa0937980:intron 20.0%
!!! CTTAAAGTTTTTTTTTACGT+GGG - chr6_3:9496179-9496198 Msa0937980:intron 20.0%
!! GTAAAGAATTGACAATTATT+TGG - chr6_3:9497039-9497058 Msa0937980:CDS 20.0%
!!! AATACATGTTACTTTTTCTT+AGG - chr6_3:9497119-9497138 Msa0937980:five_prime_UTR 20.0%
!!! AAATTCAAGAGTTGTTTTGA+TGG - chr6_3:9495192-9495211 Msa0937980:three_prime_UTR 25.0%
!!! ATCGTTTTGATTATTGATTG+TGG - chr6_3:9495557-9495576 Msa0937980:CDS 25.0%
! ATATTTCTCGTAATTATCAC+TGG - chr6_3:9495758-9495777 Msa0937980:intron 25.0%
!!! CCTTTTGTTTTTACAAACTT+TGG + chr6_3:9495882-9495901 None:intergenic 25.0%
! CCAAAGTTTGTAAAAACAAA+AGG - chr6_3:9495879-9495898 Msa0937980:intron 25.0%
! AAGTTTGTAAAAACAAAAGG+TGG - chr6_3:9495882-9495901 Msa0937980:intron 25.0%
! ATCGAGAAATAAACAATTGT+TGG + chr6_3:9495932-9495951 None:intergenic 25.0%
!!! GATTCATTGCAAACTTTTTT+TGG + chr6_3:9496363-9496382 None:intergenic 25.0%
! GACAAAATTGAAATCCAATA+TGG - chr6_3:9496419-9496438 Msa0937980:intron 25.0%
!! CCTTTTATGAAATTCCATAT+TGG + chr6_3:9496436-9496455 None:intergenic 25.0%
! CCAATATGGAATTTCATAAA+AGG - chr6_3:9496433-9496452 Msa0937980:intron 25.0%
! TCTTATTCTAACACTAGAAA+AGG - chr6_3:9496606-9496625 Msa0937980:intron 25.0%
! ATGCTTAGCAAAATAATTAC+TGG - chr6_3:9496648-9496667 Msa0937980:intron 25.0%
!! TAGCAAAATAATTACTGGTT+TGG - chr6_3:9496653-9496672 Msa0937980:intron 25.0%
! CATCAATGTATAAATGCTTT+GGG - chr6_3:9496953-9496972 Msa0937980:CDS 25.0%
! ACATATATTCAAGCAAACAT+GGG + chr6_3:9497166-9497185 None:intergenic 25.0%
! AACATATATTCAAGCAAACA+TGG + chr6_3:9497167-9497186 None:intergenic 25.0%
!!! AAATTCAAGAGTTGTTTTGA+TGG - chr6_3:9495192-9495211 Msa0937980:three_prime_UTR 25.0%
!!! ATCGTTTTGATTATTGATTG+TGG - chr6_3:9495557-9495576 Msa0937980:CDS 25.0%
! ATATTTCTCGTAATTATCAC+TGG - chr6_3:9495758-9495777 Msa0937980:intron 25.0%
!!! CCTTTTGTTTTTACAAACTT+TGG + chr6_3:9495882-9495901 None:intergenic 25.0%
! CCAAAGTTTGTAAAAACAAA+AGG - chr6_3:9495879-9495898 Msa0937980:intron 25.0%
! AAGTTTGTAAAAACAAAAGG+TGG - chr6_3:9495882-9495901 Msa0937980:intron 25.0%
! ATCGAGAAATAAACAATTGT+TGG + chr6_3:9495932-9495951 None:intergenic 25.0%
!!! GATTCATTGCAAACTTTTTT+TGG + chr6_3:9496363-9496382 None:intergenic 25.0%
! GACAAAATTGAAATCCAATA+TGG - chr6_3:9496419-9496438 Msa0937980:intron 25.0%
!! CCTTTTATGAAATTCCATAT+TGG + chr6_3:9496436-9496455 None:intergenic 25.0%
! CCAATATGGAATTTCATAAA+AGG - chr6_3:9496433-9496452 Msa0937980:intron 25.0%
! TCTTATTCTAACACTAGAAA+AGG - chr6_3:9496606-9496625 Msa0937980:intron 25.0%
! ATGCTTAGCAAAATAATTAC+TGG - chr6_3:9496648-9496667 Msa0937980:intron 25.0%
!! TAGCAAAATAATTACTGGTT+TGG - chr6_3:9496653-9496672 Msa0937980:intron 25.0%
! CATCAATGTATAAATGCTTT+GGG - chr6_3:9496953-9496972 Msa0937980:CDS 25.0%
! ACATATATTCAAGCAAACAT+GGG + chr6_3:9497166-9497185 None:intergenic 25.0%
! AACATATATTCAAGCAAACA+TGG + chr6_3:9497167-9497186 None:intergenic 25.0%
AGCATAGAAAGAATTGTGTT+TGG - chr6_3:9495132-9495151 Msa0937980:three_prime_UTR 30.0%
!! AGAGAGAATTTCTAAAGTGA+TGG - chr6_3:9495168-9495187 Msa0937980:three_prime_UTR 30.0%
AGAATGTCAACTACACTAAA+TGG - chr6_3:9495308-9495327 Msa0937980:CDS 30.0%
! ATTGTTGGCTAGTAATTGTT+TGG + chr6_3:9495917-9495936 None:intergenic 30.0%
!!! AAGTTTTTTTTTACGTGGGT+TGG - chr6_3:9496183-9496202 Msa0937980:intron 30.0%
ATTACCCTTATGACTGTAAT+GGG + chr6_3:9496229-9496248 None:intergenic 30.0%
TATTACCCTTATGACTGTAA+TGG + chr6_3:9496230-9496249 None:intergenic 30.0%
! TTTCAATTTTGTCTCCAACT+GGG + chr6_3:9496412-9496431 None:intergenic 30.0%
! ATTTCAATTTTGTCTCCAAC+TGG + chr6_3:9496413-9496432 None:intergenic 30.0%
CAAAAGATACTACAACGTAT+TGG - chr6_3:9496696-9496715 Msa0937980:intron 30.0%
TCTTGTCAAGTTTCTTATGA+AGG + chr6_3:9496761-9496780 None:intergenic 30.0%
TTCATAAGAAACTTGACAAG+AGG - chr6_3:9496760-9496779 Msa0937980:intron 30.0%
AAGACATACTACTTTATCAC+CGG - chr6_3:9496814-9496833 Msa0937980:intron 30.0%
TTCATTGTATCAGAAAGAGA+TGG + chr6_3:9496910-9496929 None:intergenic 30.0%
TCTGATACAATGAAATCTAG+TGG - chr6_3:9496916-9496935 Msa0937980:CDS 30.0%
! CCAAAGCATTTATACATTGA+TGG + chr6_3:9496955-9496974 None:intergenic 30.0%
CCATCAATGTATAAATGCTT+TGG - chr6_3:9496952-9496971 Msa0937980:CDS 30.0%
! AAATGTTGTTTATGTGAGCT+TGG - chr6_3:9496987-9497006 Msa0937980:CDS 30.0%
AATTGACAATTATTTGGGCA+TGG - chr6_3:9497045-9497064 Msa0937980:CDS 30.0%
! TGGGCATGGATTATAAATTA+AGG - chr6_3:9497059-9497078 Msa0937980:CDS 30.0%
!!! TGTTACTTTTTCTTAGGCTT+TGG - chr6_3:9497125-9497144 Msa0937980:five_prime_UTR 30.0%
AGCATAGAAAGAATTGTGTT+TGG - chr6_3:9495132-9495151 Msa0937980:three_prime_UTR 30.0%
!! AGAGAGAATTTCTAAAGTGA+TGG - chr6_3:9495168-9495187 Msa0937980:three_prime_UTR 30.0%
AGAATGTCAACTACACTAAA+TGG - chr6_3:9495308-9495327 Msa0937980:CDS 30.0%
! ATTGTTGGCTAGTAATTGTT+TGG + chr6_3:9495917-9495936 None:intergenic 30.0%
!!! AAGTTTTTTTTTACGTGGGT+TGG - chr6_3:9496183-9496202 Msa0937980:intron 30.0%
ATTACCCTTATGACTGTAAT+GGG + chr6_3:9496229-9496248 None:intergenic 30.0%
TATTACCCTTATGACTGTAA+TGG + chr6_3:9496230-9496249 None:intergenic 30.0%
! TTTCAATTTTGTCTCCAACT+GGG + chr6_3:9496412-9496431 None:intergenic 30.0%
! ATTTCAATTTTGTCTCCAAC+TGG + chr6_3:9496413-9496432 None:intergenic 30.0%
CAAAAGATACTACAACGTAT+TGG - chr6_3:9496696-9496715 Msa0937980:intron 30.0%
TCTTGTCAAGTTTCTTATGA+AGG + chr6_3:9496761-9496780 None:intergenic 30.0%
TTCATAAGAAACTTGACAAG+AGG - chr6_3:9496760-9496779 Msa0937980:intron 30.0%
AAGACATACTACTTTATCAC+CGG - chr6_3:9496814-9496833 Msa0937980:intron 30.0%
TTCATTGTATCAGAAAGAGA+TGG + chr6_3:9496910-9496929 None:intergenic 30.0%
TCTGATACAATGAAATCTAG+TGG - chr6_3:9496916-9496935 Msa0937980:CDS 30.0%
! CCAAAGCATTTATACATTGA+TGG + chr6_3:9496955-9496974 None:intergenic 30.0%
CCATCAATGTATAAATGCTT+TGG - chr6_3:9496952-9496971 Msa0937980:CDS 30.0%
! AAATGTTGTTTATGTGAGCT+TGG - chr6_3:9496987-9497006 Msa0937980:CDS 30.0%
AATTGACAATTATTTGGGCA+TGG - chr6_3:9497045-9497064 Msa0937980:CDS 30.0%
! TGGGCATGGATTATAAATTA+AGG - chr6_3:9497059-9497078 Msa0937980:CDS 30.0%
!!! TGTTACTTTTTCTTAGGCTT+TGG - chr6_3:9497125-9497144 Msa0937980:five_prime_UTR 30.0%
CGATAAACATGAAGATCGAA+TGG + chr6_3:9495541-9495560 None:intergenic 35.0%
! AACTGGGGATGTTTGTTAAT+TGG + chr6_3:9496396-9496415 None:intergenic 35.0%
AATTAACAAACATCCCCAGT+TGG - chr6_3:9496395-9496414 Msa0937980:intron 35.0%
! TTCAATTTTGTCTCCAACTG+GGG + chr6_3:9496411-9496430 None:intergenic 35.0%
ATAAGAAACTTGACAAGAGG+TGG - chr6_3:9496763-9496782 Msa0937980:intron 35.0%
GATACAATGAAATCTAGTGG+TGG - chr6_3:9496919-9496938 Msa0937980:CDS 35.0%
!!! TTATGTGAGCTTGGTTTTAG+TGG - chr6_3:9496996-9497015 Msa0937980:CDS 35.0%
!!! TATGTGAGCTTGGTTTTAGT+GGG - chr6_3:9496997-9497016 Msa0937980:CDS 35.0%
! TGGGGATTTTGTAAGAGATT+AGG - chr6_3:9497016-9497035 Msa0937980:CDS 35.0%
! GGGGATTTTGTAAGAGATTA+GGG - chr6_3:9497017-9497036 Msa0937980:CDS 35.0%
CGATAAACATGAAGATCGAA+TGG + chr6_3:9495541-9495560 None:intergenic 35.0%
! AACTGGGGATGTTTGTTAAT+TGG + chr6_3:9496396-9496415 None:intergenic 35.0%
AATTAACAAACATCCCCAGT+TGG - chr6_3:9496395-9496414 Msa0937980:intron 35.0%
! TTCAATTTTGTCTCCAACTG+GGG + chr6_3:9496411-9496430 None:intergenic 35.0%
ATAAGAAACTTGACAAGAGG+TGG - chr6_3:9496763-9496782 Msa0937980:intron 35.0%
GATACAATGAAATCTAGTGG+TGG - chr6_3:9496919-9496938 Msa0937980:CDS 35.0%
!!! TTATGTGAGCTTGGTTTTAG+TGG - chr6_3:9496996-9497015 Msa0937980:CDS 35.0%
!!! TATGTGAGCTTGGTTTTAGT+GGG - chr6_3:9496997-9497016 Msa0937980:CDS 35.0%
! TGGGGATTTTGTAAGAGATT+AGG - chr6_3:9497016-9497035 Msa0937980:CDS 35.0%
! GGGGATTTTGTAAGAGATTA+GGG - chr6_3:9497017-9497036 Msa0937980:CDS 35.0%
!!! AGTTGTTTTGATGGTGAGTG+TGG - chr6_3:9495201-9495220 Msa0937980:three_prime_UTR 40.0%
!!! TTTGATGGTGAGTGTGGTTT+TGG - chr6_3:9495207-9495226 Msa0937980:three_prime_UTR 40.0%
!!! TTGATGGTGAGTGTGGTTTT+GGG - chr6_3:9495208-9495227 Msa0937980:three_prime_UTR 40.0%
!!! TTTTGGGAGTGTTGTCATTG+TGG - chr6_3:9495224-9495243 Msa0937980:three_prime_UTR 40.0%
GACATTCTGATTCCAACCTT+TGG + chr6_3:9495296-9495315 None:intergenic 40.0%
! TCTCAAGAGCATGTCTATGT+TGG - chr6_3:9495334-9495353 Msa0937980:CDS 40.0%
!! AGCATGTCTATGTTGGTGAT+TGG - chr6_3:9495341-9495360 Msa0937980:CDS 40.0%
!!! TTTTACGTGGGTTGGAGTAT+TGG - chr6_3:9496191-9496210 Msa0937980:intron 40.0%
GTATTGGAAGTGAACAAGAC+AGG - chr6_3:9496712-9496731 Msa0937980:intron 40.0%
ACATACTACTTTATCACCGG+TGG - chr6_3:9496817-9496836 Msa0937980:intron 40.0%
TTGATGTTCTTGAACGTCCA+CGG + chr6_3:9496872-9496891 None:intergenic 40.0%
GTATCAGAAAGAGATGGAGA+TGG + chr6_3:9496904-9496923 None:intergenic 40.0%
!!! ATGTGAGCTTGGTTTTAGTG+GGG - chr6_3:9496998-9497017 Msa0937980:CDS 40.0%
!!! AGTTGTTTTGATGGTGAGTG+TGG - chr6_3:9495201-9495220 Msa0937980:three_prime_UTR 40.0%
!!! TTTGATGGTGAGTGTGGTTT+TGG - chr6_3:9495207-9495226 Msa0937980:three_prime_UTR 40.0%
!!! TTGATGGTGAGTGTGGTTTT+GGG - chr6_3:9495208-9495227 Msa0937980:three_prime_UTR 40.0%
!!! TTTTGGGAGTGTTGTCATTG+TGG - chr6_3:9495224-9495243 Msa0937980:three_prime_UTR 40.0%
GACATTCTGATTCCAACCTT+TGG + chr6_3:9495296-9495315 None:intergenic 40.0%
! TCTCAAGAGCATGTCTATGT+TGG - chr6_3:9495334-9495353 Msa0937980:CDS 40.0%
!! AGCATGTCTATGTTGGTGAT+TGG - chr6_3:9495341-9495360 Msa0937980:CDS 40.0%
!!! TTTTACGTGGGTTGGAGTAT+TGG - chr6_3:9496191-9496210 Msa0937980:intron 40.0%
GTATTGGAAGTGAACAAGAC+AGG - chr6_3:9496712-9496731 Msa0937980:intron 40.0%
ACATACTACTTTATCACCGG+TGG - chr6_3:9496817-9496836 Msa0937980:intron 40.0%
TTGATGTTCTTGAACGTCCA+CGG + chr6_3:9496872-9496891 None:intergenic 40.0%
GTATCAGAAAGAGATGGAGA+TGG + chr6_3:9496904-9496923 None:intergenic 40.0%
!!! ATGTGAGCTTGGTTTTAGTG+GGG - chr6_3:9496998-9497017 Msa0937980:CDS 40.0%
AGTGTTGTCATTGTGGCCAA+TGG - chr6_3:9495231-9495250 Msa0937980:exon 45.0%
AGGTCCAAAGCTTCATAAGG+TGG - chr6_3:9495264-9495283 Msa0937980:CDS 45.0%
GGTCCAAAGCTTCATAAGGT+GGG - chr6_3:9495265-9495284 Msa0937980:CDS 45.0%
!! ACTGTAATGGGTGGCATACT+TGG + chr6_3:9496217-9496236 None:intergenic 45.0%
TGCCACCCATTACAGTCATA+AGG - chr6_3:9496221-9496240 Msa0937980:intron 45.0%
GCCACCCATTACAGTCATAA+GGG - chr6_3:9496222-9496241 Msa0937980:intron 45.0%
! ACCCTTATGACTGTAATGGG+TGG + chr6_3:9496226-9496245 None:intergenic 45.0%
TCGCGATGTGGTTCAATTGA+CGG - chr6_3:9496786-9496805 Msa0937980:intron 45.0%
TACTACTTTATCACCGGTGG+AGG - chr6_3:9496820-9496839 Msa0937980:intron 45.0%
ATGAAAGCAGTAACCTCCAC+CGG + chr6_3:9496836-9496855 None:intergenic 45.0%
TCATGGAATGAAAGTTGCCG+TGG - chr6_3:9496852-9496871 Msa0937980:intron 45.0%
AGTGTTGTCATTGTGGCCAA+TGG - chr6_3:9495231-9495250 Msa0937980:exon 45.0%
AGGTCCAAAGCTTCATAAGG+TGG - chr6_3:9495264-9495283 Msa0937980:CDS 45.0%
GGTCCAAAGCTTCATAAGGT+GGG - chr6_3:9495265-9495284 Msa0937980:CDS 45.0%
!! ACTGTAATGGGTGGCATACT+TGG + chr6_3:9496217-9496236 None:intergenic 45.0%
TGCCACCCATTACAGTCATA+AGG - chr6_3:9496221-9496240 Msa0937980:intron 45.0%
GCCACCCATTACAGTCATAA+GGG - chr6_3:9496222-9496241 Msa0937980:intron 45.0%
! ACCCTTATGACTGTAATGGG+TGG + chr6_3:9496226-9496245 None:intergenic 45.0%
TCGCGATGTGGTTCAATTGA+CGG - chr6_3:9496786-9496805 Msa0937980:intron 45.0%
TACTACTTTATCACCGGTGG+AGG - chr6_3:9496820-9496839 Msa0937980:intron 45.0%
ATGAAAGCAGTAACCTCCAC+CGG + chr6_3:9496836-9496855 None:intergenic 45.0%
TCATGGAATGAAAGTTGCCG+TGG - chr6_3:9496852-9496871 Msa0937980:intron 45.0%
GTTGTCATTGTGGCCAATGG+TGG - chr6_3:9495234-9495253 Msa0937980:exon 50.0%
ATTGTGGCCAATGGTGGTCA+TGG - chr6_3:9495240-9495259 Msa0937980:exon 50.0%
TTGTGGCCAATGGTGGTCAT+GGG - chr6_3:9495241-9495260 Msa0937980:exon 50.0%
GGGAGGTCCAAAGCTTCATA+AGG - chr6_3:9495261-9495280 Msa0937980:CDS 50.0%
CCTCCCACCTTATGAAGCTT+TGG + chr6_3:9495271-9495290 None:intergenic 50.0%
CCAAAGCTTCATAAGGTGGG+AGG - chr6_3:9495268-9495287 Msa0937980:CDS 50.0%
CATAAGGTGGGAGGATCCAA+AGG - chr6_3:9495277-9495296 Msa0937980:CDS 50.0%
GCTCTCAACGCGTTTCTTTC+AGG - chr6_3:9495811-9495830 Msa0937980:intron 50.0%
CGATGTGGTTCAATTGACGG+AGG - chr6_3:9496789-9496808 Msa0937980:intron 50.0%
GGTGGAGGTTACTGCTTTCA+TGG - chr6_3:9496835-9496854 Msa0937980:intron 50.0%
GAAAGAGATGGAGATGGTGC+AGG + chr6_3:9496898-9496917 None:intergenic 50.0%
GTTGTCATTGTGGCCAATGG+TGG - chr6_3:9495234-9495253 Msa0937980:exon 50.0%
ATTGTGGCCAATGGTGGTCA+TGG - chr6_3:9495240-9495259 Msa0937980:exon 50.0%
TTGTGGCCAATGGTGGTCAT+GGG - chr6_3:9495241-9495260 Msa0937980:exon 50.0%
GGGAGGTCCAAAGCTTCATA+AGG - chr6_3:9495261-9495280 Msa0937980:CDS 50.0%
CCTCCCACCTTATGAAGCTT+TGG + chr6_3:9495271-9495290 None:intergenic 50.0%
CCAAAGCTTCATAAGGTGGG+AGG - chr6_3:9495268-9495287 Msa0937980:CDS 50.0%
CATAAGGTGGGAGGATCCAA+AGG - chr6_3:9495277-9495296 Msa0937980:CDS 50.0%
GCTCTCAACGCGTTTCTTTC+AGG - chr6_3:9495811-9495830 Msa0937980:intron 50.0%
CGATGTGGTTCAATTGACGG+AGG - chr6_3:9496789-9496808 Msa0937980:intron 50.0%
GGTGGAGGTTACTGCTTTCA+TGG - chr6_3:9496835-9496854 Msa0937980:intron 50.0%
GAAAGAGATGGAGATGGTGC+AGG + chr6_3:9496898-9496917 None:intergenic 50.0%
AGGTGGGAGGATCCAAAGGT+TGG - chr6_3:9495281-9495300 Msa0937980:CDS 55.0%
AGGTGGGAGGATCCAAAGGT+TGG - chr6_3:9495281-9495300 Msa0937980:CDS 55.0%
TGGCCAATGGTGGTCATGGG+AGG - chr6_3:9495244-9495263 Msa0937980:exon 60.0%
GGACCTCCCATGACCACCAT+TGG + chr6_3:9495250-9495269 None:intergenic 60.0%
GACAAGAGGTGGTCGCGATG+TGG - chr6_3:9496774-9496793 Msa0937980:intron 60.0%
TGGCCAATGGTGGTCATGGG+AGG - chr6_3:9495244-9495263 Msa0937980:exon 60.0%
GGACCTCCCATGACCACCAT+TGG + chr6_3:9495250-9495269 None:intergenic 60.0%
GACAAGAGGTGGTCGCGATG+TGG - chr6_3:9496774-9496793 Msa0937980:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 9495093 9497186 9495093 ID=Msa0937980;Name=Msa0937980
chr6_3 mRNA 9495093 9497186 9495093 ID=Msa0937980-mRNA-1;Parent=Msa0937980;Name=Msa0937980-mRNA-1;_AED=0.16;_eAED=0.16;_QI=94|1|1|1|1|1|2|157|175
chr6_3 exon 9495093 9495596 9495093 ID=Msa0937980-mRNA-1:exon:3089;Parent=Msa0937980-mRNA-1
chr6_3 exon 9496912 9497186 9496912 ID=Msa0937980-mRNA-1:exon:3088;Parent=Msa0937980-mRNA-1
chr6_3 five_prime_UTR 9497093 9497186 9497093 ID=Msa0937980-mRNA-1:five_prime_utr;Parent=Msa0937980-mRNA-1
chr6_3 CDS 9496912 9497092 9496912 ID=Msa0937980-mRNA-1:cds;Parent=Msa0937980-mRNA-1
chr6_3 CDS 9495250 9495596 9495250 ID=Msa0937980-mRNA-1:cds;Parent=Msa0937980-mRNA-1
chr6_3 three_prime_UTR 9495093 9495249 9495093 ID=Msa0937980-mRNA-1:three_prime_utr;Parent=Msa0937980-mRNA-1
Gene Sequence

>Msa0937980

ATGGAAAATTCAAGAGTTGTTTTGATGGTGAGTGTGGTTTTGGGAGTGTTGTCATTGTGGCCAATGGTGGTCATGGGAGGTCCAAAGCTTCATAAGGTGGGAGGATCCAAAGGTTGGAATCAGAATGTCAACTACACTAAATGGTCTTCTCAAGAGCATGTCTATGTTGGTGATTGGCTGAAATTTGTCTTTAACAAAAGATACTACAACGTATTGGAAGTGAACAAGACAGGCTATGAATACTGCATCGACATGACCTTCATAAGAAACTTGACAAGAGGTGGTCGCGATGTGGTTCAATTGACGGAGGCAAAGACATACTACTTTATCACCGGTGGAGGTTACTGCTTTCATGGAATGAAAGTTGCCGTGGACGTTCAAGAACATCAAACACCTGCACCATCTCCATCTCTTTCTGATACAATGAAATCTAGTGGTGGTTCTATTTTGCCATCAATGTATAAATGCTTTGGGATTATTGTTGCAAATGTTGTTTATGTGAGCTTGGTTTTAGTGGGGATTTTGTAA
Protein sequence

>Msa0937980

MENSRVVLMVSVVLGVLSLWPMVVMGGPKLHKVGGSKGWNQNVNYTKWSSQEHVYVGDWLKFVFNKRYYNVLEVNKTGYEYCIDMTFIRNLTRGGRDVVQLTEAKTYYFITGGGYCFHGMKVAVDVQEHQTPAPSPSLSDTMKSSGGSILPSMYKCFGIIVANVVYVSLVLVGIL*