AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0939210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0939210 MtrunA17_Chr6g0454911 82.456 171 30 0 1 171 96 266 1.08e-101 293
Msa0939210 MtrunA17_Chr6g0455191 74.033 181 37 1 1 171 1186 1366 2.33e-83 267
Msa0939210 MtrunA17_Chr6g0454951 67.347 196 39 1 1 171 955 1150 2.87e-83 266
Msa0939210 MtrunA17_Chr6g0454971 71.351 185 39 1 1 171 901 1085 6.22e-82 261
Msa0939210 MtrunA17_Chr6g0455251 67.568 185 43 2 1 171 986 1167 2.09e-77 249
Msa0939210 MtrunA17_Chr6g0455221 67.027 185 47 1 1 171 974 1158 2.95e-76 246
Msa0939210 MtrunA17_Chr7g0257531 73.793 145 38 0 1 145 518 662 1.83e-74 236
Msa0939210 MtrunA17_Chr6g0454851 78.472 144 31 0 1 144 961 1104 2.91e-73 238
Msa0939210 MtrunA17_Chr6g0455131 68.235 170 51 2 1 167 962 1131 1.42e-71 233
Msa0939210 MtrunA17_Chr3g0135511 63.483 178 40 1 19 171 1 178 1.59e-71 213
Msa0939210 MtrunA17_Chr3g0135541 63.128 179 41 1 18 171 152 330 6.11e-71 217
Msa0939210 MtrunA17_Chr3g0135571 62.921 178 41 1 19 171 1 178 1.08e-70 211
Msa0939210 MtrunA17_Chr6g0455211 73.333 150 40 0 1 150 903 1052 4.27e-70 229
Msa0939210 MtrunA17_Chr6g0454961 73.288 146 38 1 1 145 905 1050 5.83e-65 214
Msa0939210 MtrunA17_Chr6g0455551 71.918 146 40 1 1 145 953 1098 5.99e-64 212
Msa0939210 MtrunA17_Chr6g0454861 84.545 110 17 0 62 171 1 110 7.12e-61 184
Msa0939210 MtrunA17_Chr6g0454831 62.275 167 60 2 1 167 876 1039 1.85e-60 201
Msa0939210 MtrunA17_Chr4g0005591 53.684 190 65 1 1 167 946 1135 4.68e-60 201
Msa0939210 MtrunA17_Chr4g0005851 64.865 148 52 0 1 148 904 1051 1.37e-59 199
Msa0939210 MtrunA17_Chr4g0005871 55.814 172 74 1 1 170 994 1165 1.97e-59 199
Msa0939210 MtrunA17_Chr6g0454821 67.808 146 38 3 1 145 918 1055 3.71e-57 192
Msa0939210 MtrunA17_Chr4g0014821 54.878 164 48 2 25 163 3 165 2.05e-55 172
Msa0939210 MtrunA17_Chr6g0455031 52.000 200 66 4 1 171 876 1074 2.08e-54 184
Msa0939210 MtrunA17_Chr4g0005891 61.379 145 56 0 1 145 918 1062 6.65e-54 183
Msa0939210 MtrunA17_Chr7g0234901 57.616 151 61 2 1 150 395 543 1.85e-52 176
Msa0939210 MtrunA17_Chr4g0010711 61.644 146 53 2 1 145 1380 1523 2.12e-51 176
Msa0939210 MtrunA17_Chr7g0255681 59.589 146 56 2 1 145 1887 2030 4.94e-50 172
Msa0939210 MtrunA17_Chr4g0009171 49.057 159 76 3 1 155 1586 1743 1.25e-39 142
Msa0939210 MtrunA17_Chr4g0009041 50.000 146 70 3 1 145 1370 1513 1.95e-39 142
Msa0939210 MtrunA17_Chr4g0009241 47.020 151 78 2 1 150 1385 1534 3.92e-39 141
Msa0939210 MtrunA17_Chr4g0009401 48.344 151 76 2 1 150 1363 1512 8.73e-39 140
Msa0939210 MtrunA17_Chr4g0009141 47.945 146 74 2 1 145 1381 1525 1.56e-38 139
Msa0939210 MtrunA17_Chr4g0009011 47.260 146 72 3 1 145 152 293 1.05e-37 132
Msa0939210 MtrunA17_Chr4g0009101 47.945 146 71 3 1 145 1400 1541 4.58e-37 135
Msa0939210 MtrunA17_Chr8g0352211 50.382 131 64 1 15 144 803 933 7.19e-37 134
Msa0939210 MtrunA17_Chr5g0420341 38.372 172 100 3 1 171 861 1027 1.52e-34 127
Msa0939210 MtrunA17_Chr8g0338981 43.165 139 77 2 7 144 865 1002 1.95e-34 127
Msa0939210 MtrunA17_Chr4g0009301 46.259 147 74 4 1 145 1402 1545 2.41e-34 127
Msa0939210 MtrunA17_Chr8g0339011 45.205 146 76 4 1 144 855 998 3.47e-34 127
Msa0939210 MtrunA17_Chr5g0420331 40.541 148 86 2 1 147 861 1007 1.41e-33 125
Msa0939210 MtrunA17_Chr3g0114381 40.690 145 85 1 1 144 94 238 6.99e-33 118
Msa0939210 MtrunA17_Chr8g0339021 40.541 148 86 2 1 147 850 996 7.21e-33 123
Msa0939210 MtrunA17_Chr3g0085731 42.568 148 84 1 1 147 867 1014 2.79e-32 121
Msa0939210 MtrunA17_Chr8g0370511 43.448 145 80 2 1 144 860 1003 3.02e-32 121
Msa0939210 MtrunA17_Chr8g0338901 43.165 139 77 2 7 144 888 1025 3.38e-32 121
Msa0939210 MtrunA17_Chr5g0414761 46.154 117 62 1 29 144 673 789 6.04e-32 120
Msa0939210 MtrunA17_Chr4g0009361 44.828 145 77 3 1 142 374 518 9.55e-32 119
Msa0939210 MtrunA17_Chr8g0338931 37.662 154 93 2 15 167 11 162 4.66e-31 113
Msa0939210 MtrunA17_Chr7g0223531 44.000 150 81 2 1 148 875 1023 6.66e-31 117
Msa0939210 MtrunA17_Chr3g0085531 41.497 147 82 2 1 146 60 203 3.23e-30 112
Msa0939210 MtrunA17_Chr8g0339031 37.838 148 91 1 1 147 866 1013 6.45e-30 114
Msa0939210 MtrunA17_Chr8g0338841 43.651 126 70 1 17 141 319 444 9.63e-30 113
Msa0939210 MtrunA17_Chr8g0338881 36.601 153 95 2 11 161 899 1051 1.11e-29 114
Msa0939210 MtrunA17_Chr8g0352221 41.781 146 83 2 7 150 781 926 1.85e-29 113
Msa0939210 MtrunA17_Chr6g0455181 62.651 83 24 2 1 83 248 323 1.99e-29 110
Msa0939210 MtrunA17_Chr2g0296451 40.000 145 86 1 1 144 378 522 2.42e-29 112
Msa0939210 MtrunA17_Chr4g0009211 52.381 105 43 2 54 157 1 99 2.48e-28 102
Msa0939210 MtrunA17_Chr4g0008981 47.959 98 50 1 54 150 1 98 1.28e-25 96.3
Msa0939210 MtrunA17_Chr5g0430541 40.000 125 74 1 23 146 391 515 5.28e-23 94.7
Msa0939210 MtrunA17_Chr6g0454881 62.903 62 23 0 83 144 1 62 8.73e-23 87.0
Msa0939210 MtrunA17_Chr8g0338801 37.069 116 71 2 29 142 85 200 4.61e-22 90.5
Msa0939210 MtrunA17_Chr8g0343781 46.753 77 41 0 62 138 5 81 1.01e-18 76.3
Msa0939210 MtrunA17_Chr6g0455141 43.902 82 21 1 115 171 1 82 1.69e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 168 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTTCTTCTGATAAATT+TGG 0.163114 6_3:+11269685 Msa0939210:five_prime_UTR
GTACACATGGTCAACTTTAT+TGG 0.171486 6_3:-11267710 None:intergenic
TCGTGACGCAACAATAATTT+TGG 0.179088 6_3:+11270144 Msa0939210:five_prime_UTR
AGAAATGTTGTTGAGTATTC+TGG 0.184236 6_3:+11267829 Msa0939210:five_prime_UTR
GAACTAAAAGTTAGCCAATT+TGG 0.196925 6_3:-11271085 None:intergenic
CTAGAAACACTCATTCTTTC+GGG 0.203178 6_3:+11269761 Msa0939210:five_prime_UTR
TTGGGTCGTATTTGTTTAAT+AGG 0.212959 6_3:+11267878 Msa0939210:five_prime_UTR
TTTGACCTTACTACTGAAAA+TGG 0.216369 6_3:-11269875 None:intergenic
GTCGAGGAATATTTCTTTAT+AGG 0.217481 6_3:-11268004 None:intergenic
TGTGAACTGTTTGCAGAAAT+TGG 0.218017 6_3:+11268084 Msa0939210:five_prime_UTR
GAAATCTAAGATGGCTTTCT+TGG 0.219023 6_3:+11268691 Msa0939210:five_prime_UTR
AAAGCAATTTACAATAAAAT+TGG 0.228268 6_3:+11267385 Msa0939210:five_prime_UTR
TTCCAAAGCTTCAAACTCTT+TGG 0.228728 6_3:+11270092 Msa0939210:five_prime_UTR
GACATAGCTTGTTTCTTTAT+TGG 0.230294 6_3:+11268024 Msa0939210:five_prime_UTR
AATTATCTCTTTCAGAATAT+TGG 0.231408 6_3:-11270335 None:intergenic
ATGTTATACTACTAGGGATA+TGG 0.242062 6_3:+11267329 None:intergenic
GCACGATTTATTGCGAGATA+TGG 0.247693 6_3:+11268167 Msa0939210:five_prime_UTR
ACATAGCTTGTTTCTTTATT+GGG 0.261100 6_3:+11268025 Msa0939210:five_prime_UTR
CTCAGATTGCTTCAACTTGC+TGG 0.272469 6_3:+11268633 Msa0939210:five_prime_UTR
CCATCCAATGTTATGTTATC+TGG 0.280099 6_3:-11271193 None:intergenic
TTGCAAATGTTAGGGAAGTT+TGG 0.284442 6_3:+11267434 Msa0939210:five_prime_UTR
CCGATGATAGTTATCCAAAT+TGG 0.285411 6_3:+11271071 Msa0939210:CDS
ACCCAAAGAGTTTGAAGCTT+TGG 0.317747 6_3:-11270094 None:intergenic
TCTAGAAACACTCATTCTTT+CGG 0.323122 6_3:+11269760 Msa0939210:five_prime_UTR
TGCAAATGTTAGGGAAGTTT+GGG 0.330875 6_3:+11267435 Msa0939210:five_prime_UTR
TCCAAAGCTTCAAACTCTTT+GGG 0.342875 6_3:+11270093 Msa0939210:five_prime_UTR
AGGGAAGTTTGGGAGCAAAA+TGG 0.351260 6_3:+11267445 Msa0939210:five_prime_UTR
ATCCAAGACCAAATGATAGA+TGG 0.353358 6_3:-11269953 None:intergenic
CTACGGTCCTCAGGCTCCTT+TGG 0.355245 6_3:-11268216 None:intergenic
GCCTTGTAACTATTGATAAT+AGG 0.358165 6_3:+11268130 Msa0939210:five_prime_UTR
CTTTCAGAATATTGGCAACT+TGG 0.359162 6_3:-11270327 None:intergenic
TGGGTCGTATTTGTTTAATA+GGG 0.359408 6_3:+11267879 Msa0939210:five_prime_UTR
GGAGCTTCCTTGCAAATGTT+AGG 0.365753 6_3:+11267425 Msa0939210:five_prime_UTR
TTGCCAATACAGAGGTTTGC+AGG 0.366303 6_3:-11271551 None:intergenic
TAGCAGGCTGTGGTTTAATA+AGG 0.368417 6_3:+11268236 Msa0939210:five_prime_UTR
TTTGTATGCCACAGATTCTA+AGG 0.368797 6_3:+11270171 Msa0939210:five_prime_UTR
TCAATGGAAACTAAATTTCC+TGG 0.378176 6_3:-11268753 None:intergenic
ATACATCACAAGTATCAAAT+AGG 0.378884 6_3:+11270212 Msa0939210:five_prime_UTR
TCCCATCTATCATTTGGTCT+TGG 0.379267 6_3:+11269951 Msa0939210:five_prime_UTR
ATGTGTTCCCATCTATCATT+TGG 0.384307 6_3:+11269945 Msa0939210:five_prime_UTR
AGTTGTTGTTGTAGATAAAC+TGG 0.386956 6_3:-11267472 None:intergenic
TCAAATGATGTTATACTACT+AGG 0.387223 6_3:+11267322 None:intergenic
TCAATCCCATTCAAATGAAA+AGG 0.389059 6_3:-11270300 None:intergenic
GCAAAGAGTAGTATCAAGTA+TGG 0.390793 6_3:+11271306 Msa0939210:CDS
GCATTCAAGCAAGCCATTCC+TGG 0.392361 6_3:+11267784 Msa0939210:five_prime_UTR
CGCTAGCTCTAGAAGTCCTT+GGG 0.399380 6_3:+11267860 Msa0939210:five_prime_UTR
AGCAGAGTGGAAGTGTGTAT+TGG 0.403852 6_3:+11267906 Msa0939210:five_prime_UTR
TTAGGCAAATTTGAAAAGTC+TGG 0.404690 6_3:-11269593 None:intergenic
AGTACTAATTGTTCAAGATT+AGG 0.406368 6_3:-11269611 None:intergenic
GCCACAGATTCTAAGGAGTT+GGG 0.407788 6_3:+11270178 Msa0939210:five_prime_UTR
TTTAAGTATATGTATATCTC+TGG 0.408865 6_3:-11267686 None:intergenic
AAGATCAAGAACATTGAATC+AGG 0.409804 6_3:+11267526 Msa0939210:five_prime_UTR
GAAATGTTGTTGAGTATTCT+GGG 0.410917 6_3:+11267830 Msa0939210:five_prime_UTR
GATGTTATACATATATTAGA+TGG 0.416069 6_3:+11268060 Msa0939210:five_prime_UTR
TTGTTTAATGATTGAGAAGT+TGG 0.417492 6_3:+11269784 Msa0939210:five_prime_UTR
CACGATTTATTGCGAGATAT+GGG 0.420867 6_3:+11268168 Msa0939210:five_prime_UTR
TGTGTACAAAATGAAAGAAT+TGG 0.421042 6_3:+11267726 Msa0939210:five_prime_UTR
CTAAGATGGCTTTCTTGGAA+TGG 0.423935 6_3:+11268696 Msa0939210:five_prime_UTR
ATTTCCTTGTGCGGCTATGA+AGG 0.428746 6_3:+11269911 Msa0939210:five_prime_UTR
CTCAGACAACCTTGGACAAT+CGG 0.430971 6_3:-11269636 None:intergenic
TGAGAAGTTGGAAGAGGACT+TGG 0.432499 6_3:+11269796 Msa0939210:five_prime_UTR
TTTGATGTCCCTCAAGTTGA+AGG 0.439907 6_3:+11271127 Msa0939210:CDS
GGAAGAGGACTTGGAACAAA+TGG 0.442379 6_3:+11269805 Msa0939210:five_prime_UTR
AGCTTGTTTCTTTATTGGGA+TGG 0.450434 6_3:+11268029 Msa0939210:five_prime_UTR
CTTGCTGGAGTACAACTTGA+TGG 0.450552 6_3:+11268648 Msa0939210:five_prime_UTR
TGTTATACTACTAGGGATAT+GGG 0.453092 6_3:+11267330 None:intergenic
GTAGTATCAAGTATGGAATC+TGG 0.455139 6_3:+11271313 Msa0939210:CDS
GGAGTAACACTCAATTCTTA+TGG 0.455215 6_3:+11271526 Msa0939210:three_prime_UTR
CCGCTAGCTCTAGAAGTCCT+TGG 0.458428 6_3:+11267859 Msa0939210:five_prime_UTR
GATGTTTGATTATGATTTGA+CGG 0.458983 6_3:-11271714 None:intergenic
TTTCCTGGATAAAAGCTTGA+AGG 0.465691 6_3:-11268738 None:intergenic
CACAGCCTGCTACGGTCCTC+AGG 0.467305 6_3:-11268225 None:intergenic
GACGATGTTTGAAGTGGAGA+TGG 0.472722 6_3:-11269995 None:intergenic
TGCCACAGATTCTAAGGAGT+TGG 0.472841 6_3:+11270177 Msa0939210:five_prime_UTR
TTCTCTCTTATAAACTTGAA+TGG 0.477027 6_3:-11271254 None:intergenic
CAGCAATATCAAACATTTGT+GGG 0.478956 6_3:+11268785 Msa0939210:five_prime_UTR
AGCTCCTACCTTCAAAATCA+TGG 0.482273 6_3:-11267408 None:intergenic
TCACAGAATATGGATGTCAA+TGG 0.482636 6_3:+11271028 Msa0939210:intron
CAAGAGATTCTTTACTGAAG+AGG 0.483507 6_3:+11271423 Msa0939210:CDS
CAATCCCATTCAAATGAAAA+GGG 0.486476 6_3:-11270299 None:intergenic
AGGAGCCTGAGGACCGTAGC+AGG 0.487168 6_3:+11268220 Msa0939210:five_prime_UTR
GAGCTTCCTTGCAAATGTTA+GGG 0.490581 6_3:+11267426 Msa0939210:five_prime_UTR
TCCTATTATCAATAGTTACA+AGG 0.492312 6_3:-11268131 None:intergenic
CAGGGAACAAAAGTTGTTGA+GGG 0.492954 6_3:+11268540 Msa0939210:intron
ATCTTTCGAGAAATCTAAGA+TGG 0.494139 6_3:+11268682 Msa0939210:five_prime_UTR
CACAGAATATGGATGTCAAT+GGG 0.498136 6_3:+11271029 Msa0939210:intron
AGTCATCAATGGCTTTGTCC+AGG 0.499162 6_3:+11267643 Msa0939210:five_prime_UTR
TTGCCCTTCCTCATCTTCAA+AGG 0.500807 6_3:-11271287 None:intergenic
GTCACGAGATAGTTGATCTT+CGG 0.504087 6_3:-11270128 None:intergenic
GTGCCTGCAAACCTCTGTAT+TGG 0.506441 6_3:+11271548 Msa0939210:three_prime_UTR
AATGATTGAGAAGTTGGAAG+AGG 0.506475 6_3:+11269790 Msa0939210:five_prime_UTR
TTGCTGGAGTACAACTTGAT+GGG 0.507056 6_3:+11268649 Msa0939210:five_prime_UTR
CCAATTTGGATAACTATCAT+CGG 0.507798 6_3:-11271071 None:intergenic
CTTTATGCGGAAGTCATCAA+TGG 0.508475 6_3:+11267632 Msa0939210:five_prime_UTR
TTCAACTTATAGATGCTCCT+TGG 0.509015 6_3:-11269734 None:intergenic
GAGTTTGAAGCTTTGGAAGG+TGG 0.519513 6_3:-11270087 None:intergenic
CTGAGGACCGTAGCAGGCTG+TGG 0.521217 6_3:+11268226 Msa0939210:five_prime_UTR
ACAGCAATATCAAACATTTG+TGG 0.527858 6_3:+11268784 Msa0939210:five_prime_UTR
CGATTGTCCAAGGTTGTCTG+AGG 0.528902 6_3:+11269637 Msa0939210:five_prime_UTR
ACAGGGAACAAAAGTTGTTG+AGG 0.534108 6_3:+11268539 Msa0939210:intron
CGAGAAACCTCAGACAACCT+TGG 0.537772 6_3:-11269644 None:intergenic
CCAGATAACATAACATTGGA+TGG 0.538101 6_3:+11271193 Msa0939210:CDS
AGTTACGCCCTTCAACTTGA+GGG 0.539288 6_3:-11271135 None:intergenic
CTTGAAGGAATGCATGCTAA+AGG 0.540439 6_3:-11268723 None:intergenic
CAAATGATGTTATACTACTA+GGG 0.542507 6_3:+11267323 None:intergenic
TTCCGCATAAAGCTTTCAGT+TGG 0.542766 6_3:-11267621 None:intergenic
AAGTTACGCCCTTCAACTTG+AGG 0.544991 6_3:-11271136 None:intergenic
ACTTATAGATGCTCCTTGGA+AGG 0.545276 6_3:-11269730 None:intergenic
TCCAAGACCAAATGATAGAT+GGG 0.546726 6_3:-11269952 None:intergenic
CAGATAACACTGCAATAACA+AGG 0.550820 6_3:+11269849 Msa0939210:five_prime_UTR
CAATTTGGATAACTATCATC+GGG 0.550951 6_3:-11271070 None:intergenic
GGAGATGGGAGATCATTTGT+TGG 0.552918 6_3:-11269980 None:intergenic
AAAGCTTCAAACTCTTTGGG+TGG 0.553256 6_3:+11270096 Msa0939210:five_prime_UTR
GTAAAGAATCTCTTGACAGA+TGG 0.554032 6_3:-11271415 None:intergenic
TACTCCAGATAACATAACAT+TGG 0.554826 6_3:+11271189 Msa0939210:CDS
ATTAGTCTCCTTTGAAGATG+AGG 0.560451 6_3:+11271279 Msa0939210:CDS
AGATGCTCCTTGGAAGGCTA+CGG 0.560610 6_3:-11269724 None:intergenic
TTGATGTCCCTCAAGTTGAA+GGG 0.563800 6_3:+11271128 Msa0939210:CDS
CCCCAACTCCTTAGAATCTG+TGG 0.564228 6_3:-11270179 None:intergenic
GTTATACTACTAGGGATATG+GGG 0.565537 6_3:+11267331 None:intergenic
ATAATCAAACATCATCATCA+AGG 0.565847 6_3:+11271724 Msa0939210:three_prime_UTR
GGGTCGTATTTGTTTAATAG+GGG 0.567709 6_3:+11267880 Msa0939210:five_prime_UTR
AAAGAGTTTGAAGCTTTGGA+AGG 0.568223 6_3:-11270090 None:intergenic
AGCTGATGGGAACTACTGCT+TGG 0.568748 6_3:-11270049 None:intergenic
TGCTGGAGTACAACTTGATG+GGG 0.569220 6_3:+11268650 Msa0939210:five_prime_UTR
GTCTCCTTTGAAGATGAGGA+AGG 0.570401 6_3:+11271283 Msa0939210:CDS
ATTGGATACATTTCCTTGTG+CGG 0.570532 6_3:+11269902 Msa0939210:five_prime_UTR
TTAGCCTCCGTAGCCTTCCA+AGG 0.574187 6_3:+11269717 Msa0939210:five_prime_UTR
ACGATGTTTGAAGTGGAGAT+GGG 0.574332 6_3:-11269994 None:intergenic
TAGTACTCACCGATTGTCCA+AGG 0.575445 6_3:+11269627 Msa0939210:five_prime_UTR
GTCATCAATGGCTTTGTCCA+GGG 0.584005 6_3:+11267644 Msa0939210:five_prime_UTR
TATTAAACAAATACGACCCA+AGG 0.590436 6_3:-11267876 None:intergenic
TATTAAACCACAGCCTGCTA+CGG 0.590761 6_3:-11268233 None:intergenic
GAAGTTTATAGATTTACCCA+TGG 0.594379 6_3:+11271596 Msa0939210:three_prime_UTR
GTTATGATTACTCTACTCCC+TGG 0.597445 6_3:-11267661 None:intergenic
AAACTTCCCTAACATTTGCA+AGG 0.598838 6_3:-11267432 None:intergenic
TTGGATAACTATCATCGGGA+AGG 0.599387 6_3:-11271066 None:intergenic
AACAATTGTTGCCAATACAG+AGG 0.600303 6_3:-11271559 None:intergenic
AATGTTGTTGAGTATTCTGG+GGG 0.606546 6_3:+11267832 Msa0939210:five_prime_UTR
CCACAGATTCTAAGGAGTTG+GGG 0.610036 6_3:+11270179 Msa0939210:five_prime_UTR
ACATTTGTGGGAAGAAAACC+AGG 0.611262 6_3:+11268797 Msa0939210:five_prime_UTR
ATTGATAATAGGAACAGACT+TGG 0.613825 6_3:+11268141 Msa0939210:five_prime_UTR
ATGGATGTCAATGGGAGTGG+TGG 0.618521 6_3:+11271037 Msa0939210:CDS
TATGGAATCTGGTAACAAAG+TGG 0.619382 6_3:+11271324 Msa0939210:CDS
TGCTCCTTGGAAGGCTACGG+AGG 0.623984 6_3:-11269721 None:intergenic
AAATGTTGTTGAGTATTCTG+GGG 0.626200 6_3:+11267831 Msa0939210:five_prime_UTR
AGTTAAAGATGATAAAGCAA+TGG 0.629900 6_3:+11271502 Msa0939210:three_prime_UTR
AAATCCTTCATAGCCGCACA+AGG 0.630112 6_3:-11269915 None:intergenic
TAAAGAAACAAGAGATGACA+TGG 0.631129 6_3:-11270020 None:intergenic
TCTCCTTTGAAGATGAGGAA+GGG 0.632448 6_3:+11271284 Msa0939210:CDS
TAAAGAAACAAGCTATGTCG+AGG 0.633132 6_3:-11268020 None:intergenic
AATTCGTGACAAGTCGCCAA+AGG 0.633570 6_3:+11268200 Msa0939210:five_prime_UTR
AATATGGATGTCAATGGGAG+TGG 0.637007 6_3:+11271034 Msa0939210:CDS
TAAAGATGATAAAGCAATGG+CGG 0.639032 6_3:+11271505 Msa0939210:three_prime_UTR
TTATACTACTAGGGATATGG+GGG 0.642972 6_3:+11267332 None:intergenic
TTAATAGGGGTATAGCAGAG+TGG 0.644470 6_3:+11267893 Msa0939210:five_prime_UTR
TTACAAGGCTTCGCTCAACA+AGG 0.646110 6_3:-11268116 None:intergenic
AAGTGTGTATTGGAGAAACT+CGG 0.647467 6_3:+11267916 Msa0939210:five_prime_UTR
ACTGCAACATTGAATGAATG+AGG 0.653629 6_3:-11270239 None:intergenic
GAAGTTTGGGAGCAAAATGG+AGG 0.657913 6_3:+11267448 Msa0939210:five_prime_UTR
GGAATCTGGTAACAAAGTGG+AGG 0.658384 6_3:+11271327 Msa0939210:CDS
CCAAGGACTTCTAGAGCTAG+CGG 0.659639 6_3:-11267859 None:intergenic
ATGGCAGACGATGTTTGAAG+TGG 0.660968 6_3:-11270001 None:intergenic
CAAGTCGCCAAAGGAGCCTG+AGG 0.675191 6_3:+11268209 Msa0939210:five_prime_UTR
ACTTGACGATGTGAATACAC+TGG 0.680601 6_3:+11267597 Msa0939210:five_prime_UTR
GACCAACTGAAAGCTTTATG+CGG 0.686104 6_3:+11267619 Msa0939210:five_prime_UTR
AGTGTTATCTGCAAGCAGAG+TGG 0.712197 6_3:-11269837 None:intergenic
AGATAACACTGCAATAACAA+GGG 0.716138 6_3:+11269850 Msa0939210:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAATTCATTTGATTA+GGG - chr6_3:11269279-11269298 None:intergenic 10.0%
!! TAAATTAAATTCATTTGATT+AGG - chr6_3:11269280-11269299 None:intergenic 10.0%
!! TTTAATTATATATTCAAGAT+TGG - chr6_3:11269384-11269403 None:intergenic 10.0%
!! AAAGCAATTTACAATAAAAT+TGG + chr6_3:11267385-11267404 Msa0939210:five_prime_UTR 15.0%
!! AAGTTAAAAATAAGTTATGA+TGG + chr6_3:11267967-11267986 Msa0939210:five_prime_UTR 15.0%
!! ATTATTATAAAGAGATGAAA+AGG - chr6_3:11269068-11269087 None:intergenic 15.0%
!! TATGTCTAATGAATATATAA+GGG - chr6_3:11269175-11269194 None:intergenic 15.0%
!!! TTATCTTTTCATAAAAACTA+TGG - chr6_3:11270975-11270994 None:intergenic 15.0%
!!! ATCAGGAAAAAGTATATTAA+AGG + chr6_3:11267543-11267562 Msa0939210:five_prime_UTR 20.0%
!! TTTAAGTATATGTATATCTC+TGG - chr6_3:11267689-11267708 None:intergenic 20.0%
!!! TTCTTTTGTATTTGATCATT+AGG - chr6_3:11267949-11267968 None:intergenic 20.0%
!! GATGTTATACATATATTAGA+TGG + chr6_3:11268060-11268079 Msa0939210:five_prime_UTR 20.0%
!! AATTCATAGATTAATGATTC+AGG - chr6_3:11268497-11268516 None:intergenic 20.0%
!!! TTTTTACTCCATATTTAACA+GGG + chr6_3:11268522-11268541 Msa0939210:intron 20.0%
!! ATAAAGAAGGATTGTTAATA+TGG + chr6_3:11268986-11269005 Msa0939210:intron 20.0%
!! ATGTCTAATGAATATATAAG+GGG - chr6_3:11269174-11269193 None:intergenic 20.0%
!! CTATGTCTAATGAATATATA+AGG - chr6_3:11269176-11269195 None:intergenic 20.0%
!! ACTTTGATATAGTAAAAAGA+AGG + chr6_3:11269344-11269363 Msa0939210:intron 20.0%
!! CTTTGATATAGTAAAAAGAA+GGG + chr6_3:11269345-11269364 Msa0939210:intron 20.0%
!! AACAAGCTTACAAAATTTAA+TGG - chr6_3:11269480-11269499 None:intergenic 20.0%
!! TATGTTATATAGAAAACTGA+CGG - chr6_3:11269503-11269522 None:intergenic 20.0%
!! AATTATCTCTTTCAGAATAT+TGG - chr6_3:11270338-11270357 None:intergenic 20.0%
!! TGTAACTCTATACAATTATT+TGG + chr6_3:11270450-11270469 Msa0939210:intron 20.0%
!! AACTTAAATCCATTTGAAAA+AGG - chr6_3:11270681-11270700 None:intergenic 20.0%
!!! CATCATTTATATGACTTTTA+AGG - chr6_3:11270792-11270811 None:intergenic 20.0%
!!! GTACAAGAAGTACTTTTTTA+TGG - chr6_3:11267579-11267598 None:intergenic 25.0%
!! ATTCTTTCATTTTGTACACA+TGG - chr6_3:11267726-11267745 None:intergenic 25.0%
! TGTGTACAAAATGAAAGAAT+TGG + chr6_3:11267726-11267745 Msa0939210:five_prime_UTR 25.0%
!!! AATCAATTGAGCTTTTTAGT+TGG + chr6_3:11267758-11267777 Msa0939210:five_prime_UTR 25.0%
!!! ACATAGCTTGTTTCTTTATT+GGG + chr6_3:11268025-11268044 Msa0939210:five_prime_UTR 25.0%
! TCCTATTATCAATAGTTACA+AGG - chr6_3:11268134-11268153 None:intergenic 25.0%
!! ACTAATTTTGCAAGTTCTTT+TGG - chr6_3:11268398-11268417 None:intergenic 25.0%
! AAGAACTTGCAAAATTAGTT+TGG + chr6_3:11268399-11268418 Msa0939210:intron 25.0%
! AAAAAAGACATGAGATGAAA+TGG - chr6_3:11268468-11268487 None:intergenic 25.0%
!!! TCATCTCATGTCTTTTTTAT+CGG + chr6_3:11268470-11268489 Msa0939210:intron 25.0%
!! CTTTTTACTCCATATTTAAC+AGG + chr6_3:11268521-11268540 Msa0939210:intron 25.0%
!! AAACTTTTTGCATTTTCTCT+TGG - chr6_3:11268582-11268601 None:intergenic 25.0%
!! AGACAGTAATTTTATAGAGA+AGG - chr6_3:11269131-11269150 None:intergenic 25.0%
! TGTCTAATGAATATATAAGG+GGG - chr6_3:11269173-11269192 None:intergenic 25.0%
! AAAAATTTGCCAATACCTTA+AGG + chr6_3:11269219-11269238 Msa0939210:intron 25.0%
! TTGGAGTTTATTAAATTCTC+AGG + chr6_3:11269248-11269267 Msa0939210:intron 25.0%
! ATATATATACAGCCTAAATC+TGG + chr6_3:11269315-11269334 Msa0939210:intron 25.0%
! ATATAGTAAAAAGAAGGGAA+AGG + chr6_3:11269350-11269369 Msa0939210:intron 25.0%
! AGTACTAATTGTTCAAGATT+AGG - chr6_3:11269614-11269633 None:intergenic 25.0%
! CAAAGTTCTTCTGATAAATT+TGG + chr6_3:11269685-11269704 Msa0939210:five_prime_UTR 25.0%
! TTGTTTAATGATTGAGAAGT+TGG + chr6_3:11269784-11269803 Msa0939210:five_prime_UTR 25.0%
! ATAAAAAGAAGATAGCTGAT+GGG - chr6_3:11270065-11270084 None:intergenic 25.0%
! ATACATCACAAGTATCAAAT+AGG + chr6_3:11270212-11270231 Msa0939210:five_prime_UTR 25.0%
!! TCTGAAAGAGATAATTTTAC+AGG + chr6_3:11270342-11270361 Msa0939210:CDS 25.0%
! TCTATACAATTATTTGGCAT+AGG + chr6_3:11270456-11270475 Msa0939210:intron 25.0%
! TAGCAAAATTTGTGAGAATT+TGG - chr6_3:11270512-11270531 None:intergenic 25.0%
!!! GATATGAATCCTTTTTCAAA+TGG + chr6_3:11270669-11270688 Msa0939210:intron 25.0%
!!! GAACATTTATGATTTGTTGA+CGG - chr6_3:11270736-11270755 None:intergenic 25.0%
! TATACTCATGTTCTTCTTAT+GGG - chr6_3:11270852-11270871 None:intergenic 25.0%
! ATATACTCATGTTCTTCTTA+TGG - chr6_3:11270853-11270872 None:intergenic 25.0%
! ATCCACTATATAACTAGTAT+TGG - chr6_3:11270880-11270899 None:intergenic 25.0%
! ATTTGTACTTTCACAGAATA+TGG + chr6_3:11271018-11271037 Msa0939210:intron 25.0%
!!! AAATTGGCTAACTTTTAGTT+CGG + chr6_3:11271087-11271106 Msa0939210:CDS 25.0%
!! TTTTCACCAACACATTTTTA+AGG - chr6_3:11271219-11271238 None:intergenic 25.0%
! TTCTCTCTTATAAACTTGAA+TGG - chr6_3:11271257-11271276 None:intergenic 25.0%
! AGTTAAAGATGATAAAGCAA+TGG + chr6_3:11271502-11271521 Msa0939210:three_prime_UTR 25.0%
! CTATAAACTTCAGCAAAAAA+TGG - chr6_3:11271587-11271606 None:intergenic 25.0%
! AATTGAGAAAAAAACACCAT+GGG - chr6_3:11271615-11271634 None:intergenic 25.0%
! TAATTGAGAAAAAAACACCA+TGG - chr6_3:11271616-11271635 None:intergenic 25.0%
! GATGTTTGATTATGATTTGA+CGG - chr6_3:11271717-11271736 None:intergenic 25.0%
! ATAATCAAACATCATCATCA+AGG + chr6_3:11271724-11271743 Msa0939210:three_prime_UTR 25.0%
!! ATTGTAAATTGCTTTTGCGA+TGG - chr6_3:11267380-11267399 None:intergenic 30.0%
! AAAATTGGCCATGATTTTGA+AGG + chr6_3:11267400-11267419 Msa0939210:five_prime_UTR 30.0%
! AGTTGTTGTTGTAGATAAAC+TGG - chr6_3:11267475-11267494 None:intergenic 30.0%
AAGATCAAGAACATTGAATC+AGG + chr6_3:11267526-11267545 Msa0939210:five_prime_UTR 30.0%
AGAAATGTTGTTGAGTATTC+TGG + chr6_3:11267829-11267848 Msa0939210:five_prime_UTR 30.0%
GAAATGTTGTTGAGTATTCT+GGG + chr6_3:11267830-11267849 Msa0939210:five_prime_UTR 30.0%
AAATGTTGTTGAGTATTCTG+GGG + chr6_3:11267831-11267850 Msa0939210:five_prime_UTR 30.0%
TATTAAACAAATACGACCCA+AGG - chr6_3:11267879-11267898 None:intergenic 30.0%
TTGGGTCGTATTTGTTTAAT+AGG + chr6_3:11267878-11267897 Msa0939210:five_prime_UTR 30.0%
TGGGTCGTATTTGTTTAATA+GGG + chr6_3:11267879-11267898 Msa0939210:five_prime_UTR 30.0%
GTCGAGGAATATTTCTTTAT+AGG - chr6_3:11268007-11268026 None:intergenic 30.0%
!! GACATAGCTTGTTTCTTTAT+TGG + chr6_3:11268024-11268043 Msa0939210:five_prime_UTR 30.0%
! GCCTTGTAACTATTGATAAT+AGG + chr6_3:11268130-11268149 Msa0939210:five_prime_UTR 30.0%
! ATTGATAATAGGAACAGACT+TGG + chr6_3:11268141-11268160 Msa0939210:five_prime_UTR 30.0%
!!! CATCTCATGTCTTTTTTATC+GGG + chr6_3:11268471-11268490 Msa0939210:intron 30.0%
! CTTTTGTTCCCTGTTAAATA+TGG - chr6_3:11268533-11268552 None:intergenic 30.0%
ATCTTTCGAGAAATCTAAGA+TGG + chr6_3:11268682-11268701 Msa0939210:five_prime_UTR 30.0%
TCAATGGAAACTAAATTTCC+TGG - chr6_3:11268756-11268775 None:intergenic 30.0%
!!! ATTGCTGTTTTGTAACTCAA+TGG - chr6_3:11268772-11268791 None:intergenic 30.0%
ACAGCAATATCAAACATTTG+TGG + chr6_3:11268784-11268803 Msa0939210:five_prime_UTR 30.0%
CAGCAATATCAAACATTTGT+GGG + chr6_3:11268785-11268804 Msa0939210:five_prime_UTR 30.0%
GAATTGTGAAAAAACAGAAG+AGG - chr6_3:11268837-11268856 None:intergenic 30.0%
ACAAGAAGGAAAGATAAAGA+AGG + chr6_3:11268973-11268992 Msa0939210:intron 30.0%
AAGAAGGATTGTTAATATGG+CGG + chr6_3:11268989-11269008 Msa0939210:intron 30.0%
! CAAAAATAGCCTTAAGGTAT+TGG - chr6_3:11269231-11269250 None:intergenic 30.0%
!! CAATACCTTAAGGCTATTTT+TGG + chr6_3:11269229-11269248 Msa0939210:intron 30.0%
! AAACTCCAAAAATAGCCTTA+AGG - chr6_3:11269237-11269256 None:intergenic 30.0%
! CAAAGTTTTCTACCAGATTT+AGG - chr6_3:11269330-11269349 None:intergenic 30.0%
TAAAAAGAAGGGAAAGGAAA+GGG + chr6_3:11269356-11269375 Msa0939210:intron 30.0%
TAACATATATGTTCTTGCAG+AGG + chr6_3:11269516-11269535 Msa0939210:intron 30.0%
TTAGGCAAATTTGAAAAGTC+TGG - chr6_3:11269596-11269615 None:intergenic 30.0%
TCTAGAAACACTCATTCTTT+CGG + chr6_3:11269760-11269779 Msa0939210:five_prime_UTR 30.0%
AGATAACACTGCAATAACAA+GGG + chr6_3:11269850-11269869 Msa0939210:five_prime_UTR 30.0%
TTTGACCTTACTACTGAAAA+TGG - chr6_3:11269878-11269897 None:intergenic 30.0%
TAAAGAAACAAGAGATGACA+TGG - chr6_3:11270023-11270042 None:intergenic 30.0%
CATAAAAAGAAGATAGCTGA+TGG - chr6_3:11270066-11270085 None:intergenic 30.0%
! AAGTCCCTTTTCATTTGAAT+GGG + chr6_3:11270295-11270314 Msa0939210:exon 30.0%
CAATCCCATTCAAATGAAAA+GGG - chr6_3:11270302-11270321 None:intergenic 30.0%
TCAATCCCATTCAAATGAAA+AGG - chr6_3:11270303-11270322 None:intergenic 30.0%
CTCCAATACTAGTTATATAG+TGG + chr6_3:11270875-11270894 Msa0939210:intron 30.0%
ACAAAAATAGAGCTCATTCA+GGG - chr6_3:11270914-11270933 None:intergenic 30.0%
TACAAAAATAGAGCTCATTC+AGG - chr6_3:11270915-11270934 None:intergenic 30.0%
CAATTTGGATAACTATCATC+GGG - chr6_3:11271073-11271092 None:intergenic 30.0%
CCAATTTGGATAACTATCAT+CGG - chr6_3:11271074-11271093 None:intergenic 30.0%
GAACTAAAAGTTAGCCAATT+TGG - chr6_3:11271088-11271107 None:intergenic 30.0%
TACTCCAGATAACATAACAT+TGG + chr6_3:11271189-11271208 Msa0939210:CDS 30.0%
CAGAAATAAGAAAAATCGAG+TGG + chr6_3:11271471-11271490 Msa0939210:CDS 30.0%
TAAAGATGATAAAGCAATGG+CGG + chr6_3:11271505-11271524 Msa0939210:three_prime_UTR 30.0%
GAAGTTTATAGATTTACCCA+TGG + chr6_3:11271596-11271615 Msa0939210:three_prime_UTR 30.0%
AAACTTCCCTAACATTTGCA+AGG - chr6_3:11267435-11267454 None:intergenic 35.0%
TTGCAAATGTTAGGGAAGTT+TGG + chr6_3:11267434-11267453 Msa0939210:five_prime_UTR 35.0%
TGCAAATGTTAGGGAAGTTT+GGG + chr6_3:11267435-11267454 Msa0939210:five_prime_UTR 35.0%
GTACACATGGTCAACTTTAT+TGG - chr6_3:11267713-11267732 None:intergenic 35.0%
! TGCAAAATTTTCTCCAGGAA+TGG - chr6_3:11267800-11267819 None:intergenic 35.0%
! ATGCTTGCAAAATTTTCTCC+AGG - chr6_3:11267805-11267824 None:intergenic 35.0%
AATGTTGTTGAGTATTCTGG+GGG + chr6_3:11267832-11267851 Msa0939210:five_prime_UTR 35.0%
GGGTCGTATTTGTTTAATAG+GGG + chr6_3:11267880-11267899 Msa0939210:five_prime_UTR 35.0%
AAGTGTGTATTGGAGAAACT+CGG + chr6_3:11267916-11267935 Msa0939210:five_prime_UTR 35.0%
TAAAGAAACAAGCTATGTCG+AGG - chr6_3:11268023-11268042 None:intergenic 35.0%
! AGCTTGTTTCTTTATTGGGA+TGG + chr6_3:11268029-11268048 Msa0939210:five_prime_UTR 35.0%
TGTGAACTGTTTGCAGAAAT+TGG + chr6_3:11268084-11268103 Msa0939210:five_prime_UTR 35.0%
CACGATTTATTGCGAGATAT+GGG + chr6_3:11268168-11268187 Msa0939210:five_prime_UTR 35.0%
!!! TCATATACTTTTTTTCCCCG+TGG + chr6_3:11268296-11268315 Msa0939210:intron 35.0%
TTAAGATGATGTCAATCCAC+GGG - chr6_3:11268315-11268334 None:intergenic 35.0%
CTTAAGATGATGTCAATCCA+CGG - chr6_3:11268316-11268335 None:intergenic 35.0%
! GAAATCTAAGATGGCTTTCT+TGG + chr6_3:11268691-11268710 Msa0939210:five_prime_UTR 35.0%
! ATTCCTTCAAGCTTTTATCC+AGG + chr6_3:11268735-11268754 Msa0939210:five_prime_UTR 35.0%
TTTCCTGGATAAAAGCTTGA+AGG - chr6_3:11268741-11268760 None:intergenic 35.0%
GAGGAAAAAAACCTAATACC+TGG - chr6_3:11268818-11268837 None:intergenic 35.0%
GAGCTAAAAAACGTATTGGA+GGG + chr6_3:11269011-11269030 Msa0939210:intron 35.0%
AGCTAAAAAACGTATTGGAG+GGG + chr6_3:11269012-11269031 Msa0939210:intron 35.0%
GTAAAAAGAAGGGAAAGGAA+AGG + chr6_3:11269355-11269374 Msa0939210:intron 35.0%
ATATATGTTCTTGCAGAGGT+TGG + chr6_3:11269520-11269539 Msa0939210:intron 35.0%
TTCAACTTATAGATGCTCCT+TGG - chr6_3:11269737-11269756 None:intergenic 35.0%
CTAGAAACACTCATTCTTTC+GGG + chr6_3:11269761-11269780 Msa0939210:five_prime_UTR 35.0%
AATGATTGAGAAGTTGGAAG+AGG + chr6_3:11269790-11269809 Msa0939210:five_prime_UTR 35.0%
CAGATAACACTGCAATAACA+AGG + chr6_3:11269849-11269868 Msa0939210:five_prime_UTR 35.0%
! GTAGTAAGGTCAAAAAGCAT+TGG + chr6_3:11269884-11269903 Msa0939210:five_prime_UTR 35.0%
ATTGGATACATTTCCTTGTG+CGG + chr6_3:11269902-11269921 Msa0939210:five_prime_UTR 35.0%
ATGTGTTCCCATCTATCATT+TGG + chr6_3:11269945-11269964 Msa0939210:five_prime_UTR 35.0%
TCCAAGACCAAATGATAGAT+GGG - chr6_3:11269955-11269974 None:intergenic 35.0%
ATCCAAGACCAAATGATAGA+TGG - chr6_3:11269956-11269975 None:intergenic 35.0%
!! AAAGAGTTTGAAGCTTTGGA+AGG - chr6_3:11270093-11270112 None:intergenic 35.0%
TTCCAAAGCTTCAAACTCTT+TGG + chr6_3:11270092-11270111 Msa0939210:five_prime_UTR 35.0%
TCCAAAGCTTCAAACTCTTT+GGG + chr6_3:11270093-11270112 Msa0939210:five_prime_UTR 35.0%
! TCGTGACGCAACAATAATTT+TGG + chr6_3:11270144-11270163 Msa0939210:five_prime_UTR 35.0%
TTTGTATGCCACAGATTCTA+AGG + chr6_3:11270171-11270190 Msa0939210:five_prime_UTR 35.0%
ACTGCAACATTGAATGAATG+AGG - chr6_3:11270242-11270261 None:intergenic 35.0%
! CAAGTCCCTTTTCATTTGAA+TGG + chr6_3:11270294-11270313 Msa0939210:exon 35.0%
CTTTCAGAATATTGGCAACT+TGG - chr6_3:11270330-11270349 None:intergenic 35.0%
ACACATGCAGACATAAATGA+GGG - chr6_3:11270389-11270408 None:intergenic 35.0%
CGACAGAATTCAAATGTATG+AGG - chr6_3:11270418-11270437 None:intergenic 35.0%
TCCAAAACGTATCAGTTCAA+TGG - chr6_3:11270617-11270636 None:intergenic 35.0%
TCACAGAATATGGATGTCAA+TGG + chr6_3:11271028-11271047 Msa0939210:intron 35.0%
CACAGAATATGGATGTCAAT+GGG + chr6_3:11271029-11271048 Msa0939210:intron 35.0%
CCGATGATAGTTATCCAAAT+TGG + chr6_3:11271071-11271090 Msa0939210:CDS 35.0%
CCATCCAATGTTATGTTATC+TGG - chr6_3:11271196-11271215 None:intergenic 35.0%
CCAGATAACATAACATTGGA+TGG + chr6_3:11271193-11271212 Msa0939210:CDS 35.0%
! ATTAGTCTCCTTTGAAGATG+AGG + chr6_3:11271279-11271298 Msa0939210:CDS 35.0%
GCAAAGAGTAGTATCAAGTA+TGG + chr6_3:11271306-11271325 Msa0939210:CDS 35.0%
GTAGTATCAAGTATGGAATC+TGG + chr6_3:11271313-11271332 Msa0939210:CDS 35.0%
TATGGAATCTGGTAACAAAG+TGG + chr6_3:11271324-11271343 Msa0939210:CDS 35.0%
GTAAAGAATCTCTTGACAGA+TGG - chr6_3:11271418-11271437 None:intergenic 35.0%
CAAGAGATTCTTTACTGAAG+AGG + chr6_3:11271423-11271442 Msa0939210:CDS 35.0%
GGAGTAACACTCAATTCTTA+TGG + chr6_3:11271526-11271545 Msa0939210:three_prime_UTR 35.0%
AACAATTGTTGCCAATACAG+AGG - chr6_3:11271562-11271581 None:intergenic 35.0%
!! GTAAATTGCTTTTGCGATGG+TGG - chr6_3:11267377-11267396 None:intergenic 40.0%
!! TTGGCCATGATTTTGAAGGT+AGG + chr6_3:11267404-11267423 Msa0939210:five_prime_UTR 40.0%
AGCTCCTACCTTCAAAATCA+TGG - chr6_3:11267411-11267430 None:intergenic 40.0%
GAGCTTCCTTGCAAATGTTA+GGG + chr6_3:11267426-11267445 Msa0939210:five_prime_UTR 40.0%
ACTTGACGATGTGAATACAC+TGG + chr6_3:11267597-11267616 Msa0939210:five_prime_UTR 40.0%
! GACCAACTGAAAGCTTTATG+CGG + chr6_3:11267619-11267638 Msa0939210:five_prime_UTR 40.0%
TTCCGCATAAAGCTTTCAGT+TGG - chr6_3:11267624-11267643 None:intergenic 40.0%
CTTTATGCGGAAGTCATCAA+TGG + chr6_3:11267632-11267651 Msa0939210:five_prime_UTR 40.0%
GTTATGATTACTCTACTCCC+TGG - chr6_3:11267664-11267683 None:intergenic 40.0%
! TTAATAGGGGTATAGCAGAG+TGG + chr6_3:11267893-11267912 Msa0939210:five_prime_UTR 40.0%
GCACGATTTATTGCGAGATA+TGG + chr6_3:11268167-11268186 Msa0939210:five_prime_UTR 40.0%
TATTAAACCACAGCCTGCTA+CGG - chr6_3:11268236-11268255 None:intergenic 40.0%
TAGCAGGCTGTGGTTTAATA+AGG + chr6_3:11268236-11268255 Msa0939210:five_prime_UTR 40.0%
TAAGATGATGTCAATCCACG+GGG - chr6_3:11268314-11268333 None:intergenic 40.0%
ACAGGGAACAAAAGTTGTTG+AGG + chr6_3:11268539-11268558 Msa0939210:intron 40.0%
CAGGGAACAAAAGTTGTTGA+GGG + chr6_3:11268540-11268559 Msa0939210:intron 40.0%
TTGCTGGAGTACAACTTGAT+GGG + chr6_3:11268649-11268668 Msa0939210:five_prime_UTR 40.0%
CTAAGATGGCTTTCTTGGAA+TGG + chr6_3:11268696-11268715 Msa0939210:five_prime_UTR 40.0%
CTTGAAGGAATGCATGCTAA+AGG - chr6_3:11268726-11268745 None:intergenic 40.0%
ACATTTGTGGGAAGAAAACC+AGG + chr6_3:11268797-11268816 Msa0939210:five_prime_UTR 40.0%
TGGGAAGAAAACCAGGTATT+AGG + chr6_3:11268804-11268823 Msa0939210:intron 40.0%
CAAATTTCGCAAGATCCTTG+AGG + chr6_3:11268919-11268938 Msa0939210:intron 40.0%
AAGATCCTTGAGGCTATGTT+TGG + chr6_3:11268929-11268948 Msa0939210:intron 40.0%
AGATCCTTGAGGCTATGTTT+GGG + chr6_3:11268930-11268949 Msa0939210:intron 40.0%
GGGAGTTTAGGAGAAAAGAA+AGG + chr6_3:11268950-11268969 Msa0939210:intron 40.0%
GGAGAAAAGAAAGGACAAGA+AGG + chr6_3:11268959-11268978 Msa0939210:intron 40.0%
GGAGCTAAAAAACGTATTGG+AGG + chr6_3:11269010-11269029 Msa0939210:intron 40.0%
AACGTATTGGAGGGGAATTT+AGG + chr6_3:11269020-11269039 Msa0939210:intron 40.0%
ACTTATAGATGCTCCTTGGA+AGG - chr6_3:11269733-11269752 None:intergenic 40.0%
! GGGTACCATTTTCAGTAGTA+AGG + chr6_3:11269870-11269889 Msa0939210:five_prime_UTR 40.0%
TCCCATCTATCATTTGGTCT+TGG + chr6_3:11269951-11269970 Msa0939210:five_prime_UTR 40.0%
! ACGATGTTTGAAGTGGAGAT+GGG - chr6_3:11269997-11270016 None:intergenic 40.0%
! ACCCAAAGAGTTTGAAGCTT+TGG - chr6_3:11270097-11270116 None:intergenic 40.0%
AAAGCTTCAAACTCTTTGGG+TGG + chr6_3:11270096-11270115 Msa0939210:five_prime_UTR 40.0%
GTCACGAGATAGTTGATCTT+CGG - chr6_3:11270131-11270150 None:intergenic 40.0%
ACATGCAGACATAAATGAGG+GGG - chr6_3:11270387-11270406 None:intergenic 40.0%
CACATGCAGACATAAATGAG+GGG - chr6_3:11270388-11270407 None:intergenic 40.0%
CACACATGCAGACATAAATG+AGG - chr6_3:11270390-11270409 None:intergenic 40.0%
! GCCATTGAACTGATACGTTT+TGG + chr6_3:11270613-11270632 Msa0939210:intron 40.0%
!! TTTAAGTTGTACGCACTGAC+AGG + chr6_3:11270693-11270712 Msa0939210:intron 40.0%
AATATGGATGTCAATGGGAG+TGG + chr6_3:11271034-11271053 Msa0939210:CDS 40.0%
TTGGATAACTATCATCGGGA+AGG - chr6_3:11271069-11271088 None:intergenic 40.0%
!!! TGGCTAACTTTTAGTTCGGA+AGG + chr6_3:11271091-11271110 Msa0939210:CDS 40.0%
!! TTTGATGTCCCTCAAGTTGA+AGG + chr6_3:11271127-11271146 Msa0939210:CDS 40.0%
!! TTGATGTCCCTCAAGTTGAA+GGG + chr6_3:11271128-11271147 Msa0939210:CDS 40.0%
! GGATGGCCTTAAAAATGTGT+TGG + chr6_3:11271210-11271229 Msa0939210:CDS 40.0%
! TCTCCTTTGAAGATGAGGAA+GGG + chr6_3:11271284-11271303 Msa0939210:CDS 40.0%
GGAGCTTCCTTGCAAATGTT+AGG + chr6_3:11267425-11267444 Msa0939210:five_prime_UTR 45.0%
AGGGAAGTTTGGGAGCAAAA+TGG + chr6_3:11267445-11267464 Msa0939210:five_prime_UTR 45.0%
GAAGTTTGGGAGCAAAATGG+AGG + chr6_3:11267448-11267467 Msa0939210:five_prime_UTR 45.0%
!! AGTCATCAATGGCTTTGTCC+AGG + chr6_3:11267643-11267662 Msa0939210:five_prime_UTR 45.0%
!! GTCATCAATGGCTTTGTCCA+GGG + chr6_3:11267644-11267663 Msa0939210:five_prime_UTR 45.0%
! AGCAGAGTGGAAGTGTGTAT+TGG + chr6_3:11267906-11267925 Msa0939210:five_prime_UTR 45.0%
TTACAAGGCTTCGCTCAACA+AGG - chr6_3:11268119-11268138 None:intergenic 45.0%
AATTCGTGACAAGTCGCCAA+AGG + chr6_3:11268200-11268219 Msa0939210:five_prime_UTR 45.0%
! GTGAATCGTTTTGTGCTGCA+TGG + chr6_3:11268424-11268443 Msa0939210:intron 45.0%
CTCAGATTGCTTCAACTTGC+TGG + chr6_3:11268633-11268652 Msa0939210:five_prime_UTR 45.0%
CTTGCTGGAGTACAACTTGA+TGG + chr6_3:11268648-11268667 Msa0939210:five_prime_UTR 45.0%
TGCTGGAGTACAACTTGATG+GGG + chr6_3:11268650-11268669 Msa0939210:five_prime_UTR 45.0%
AACTCCCAAACATAGCCTCA+AGG - chr6_3:11268937-11268956 None:intergenic 45.0%
GAGGCTATGTTTGGGAGTTT+AGG + chr6_3:11268938-11268957 Msa0939210:intron 45.0%
GGCGGAGCTAAAAAACGTAT+TGG + chr6_3:11269007-11269026 Msa0939210:intron 45.0%
GTATTGGAGGGGAATTTAGG+AGG + chr6_3:11269023-11269042 Msa0939210:intron 45.0%
! TAGTACTCACCGATTGTCCA+AGG + chr6_3:11269627-11269646 Msa0939210:five_prime_UTR 45.0%
CTCAGACAACCTTGGACAAT+CGG - chr6_3:11269639-11269658 None:intergenic 45.0%
TGAGAAGTTGGAAGAGGACT+TGG + chr6_3:11269796-11269815 Msa0939210:five_prime_UTR 45.0%
GGAAGAGGACTTGGAACAAA+TGG + chr6_3:11269805-11269824 Msa0939210:five_prime_UTR 45.0%
AGTGTTATCTGCAAGCAGAG+TGG - chr6_3:11269840-11269859 None:intergenic 45.0%
ATTTCCTTGTGCGGCTATGA+AGG + chr6_3:11269911-11269930 Msa0939210:five_prime_UTR 45.0%
AAATCCTTCATAGCCGCACA+AGG - chr6_3:11269918-11269937 None:intergenic 45.0%
GGAGATGGGAGATCATTTGT+TGG - chr6_3:11269983-11270002 None:intergenic 45.0%
! GACGATGTTTGAAGTGGAGA+TGG - chr6_3:11269998-11270017 None:intergenic 45.0%
ATGGCAGACGATGTTTGAAG+TGG - chr6_3:11270004-11270023 None:intergenic 45.0%
!! GAGTTTGAAGCTTTGGAAGG+TGG - chr6_3:11270090-11270109 None:intergenic 45.0%
! TGCCACAGATTCTAAGGAGT+TGG + chr6_3:11270177-11270196 Msa0939210:five_prime_UTR 45.0%
! GCCACAGATTCTAAGGAGTT+GGG + chr6_3:11270178-11270197 Msa0939210:five_prime_UTR 45.0%
! CCACAGATTCTAAGGAGTTG+GGG + chr6_3:11270179-11270198 Msa0939210:five_prime_UTR 45.0%
TGCAGTCAAGTGCATGTTTC+AGG + chr6_3:11270256-11270275 Msa0939210:intron 45.0%
CTCGTGAGTCATCATGTAAG+TGG - chr6_3:11270546-11270565 None:intergenic 45.0%
AGTTACGCCCTTCAACTTGA+GGG - chr6_3:11271138-11271157 None:intergenic 45.0%
AAGTTACGCCCTTCAACTTG+AGG - chr6_3:11271139-11271158 None:intergenic 45.0%
! GTCTCCTTTGAAGATGAGGA+AGG + chr6_3:11271283-11271302 Msa0939210:CDS 45.0%
TTGCCCTTCCTCATCTTCAA+AGG - chr6_3:11271290-11271309 None:intergenic 45.0%
GGAATCTGGTAACAAAGTGG+AGG + chr6_3:11271327-11271346 Msa0939210:CDS 45.0%
TTGCCAATACAGAGGTTTGC+AGG - chr6_3:11271554-11271573 None:intergenic 45.0%
CTACTAGGGATATGGGGGAT+GGG + chr6_3:11267337-11267356 Msa0939210:five_prime_UTR 50.0%
GCATTCAAGCAAGCCATTCC+TGG + chr6_3:11267784-11267803 Msa0939210:five_prime_UTR 50.0%
!! CCAAGGACTTCTAGAGCTAG+CGG - chr6_3:11267862-11267881 None:intergenic 50.0%
!! CGCTAGCTCTAGAAGTCCTT+GGG + chr6_3:11267860-11267879 Msa0939210:five_prime_UTR 50.0%
CGATTGTCCAAGGTTGTCTG+AGG + chr6_3:11269637-11269656 Msa0939210:five_prime_UTR 50.0%
CGAGAAACCTCAGACAACCT+TGG - chr6_3:11269647-11269666 None:intergenic 50.0%
AGATGCTCCTTGGAAGGCTA+CGG - chr6_3:11269727-11269746 None:intergenic 50.0%
AGCTGATGGGAACTACTGCT+TGG - chr6_3:11270052-11270071 None:intergenic 50.0%
CCCCAACTCCTTAGAATCTG+TGG - chr6_3:11270182-11270201 None:intergenic 50.0%
ATGGATGTCAATGGGAGTGG+TGG + chr6_3:11271037-11271056 Msa0939210:CDS 50.0%
GTGCCTGCAAACCTCTGTAT+TGG + chr6_3:11271548-11271567 Msa0939210:three_prime_UTR 50.0%
ATATGGGGGATGGGTCGAAG+TGG + chr6_3:11267346-11267365 Msa0939210:five_prime_UTR 55.0%
!! CCGCTAGCTCTAGAAGTCCT+TGG + chr6_3:11267859-11267878 Msa0939210:five_prime_UTR 55.0%
TTAGCCTCCGTAGCCTTCCA+AGG + chr6_3:11269717-11269736 Msa0939210:five_prime_UTR 55.0%
CAAGTCGCCAAAGGAGCCTG+AGG + chr6_3:11268209-11268228 Msa0939210:five_prime_UTR 60.0%
CTACGGTCCTCAGGCTCCTT+TGG - chr6_3:11268219-11268238 None:intergenic 60.0%
TGCTCCTTGGAAGGCTACGG+AGG - chr6_3:11269724-11269743 None:intergenic 60.0%
AGGAGCCTGAGGACCGTAGC+AGG + chr6_3:11268220-11268239 Msa0939210:five_prime_UTR 65.0%
CACAGCCTGCTACGGTCCTC+AGG - chr6_3:11268228-11268247 None:intergenic 65.0%
CTGAGGACCGTAGCAGGCTG+TGG + chr6_3:11268226-11268245 Msa0939210:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 11267337 11271796 11267337 ID=Msa0939210;Name=Msa0939210
chr6_3 mRNA 11267337 11271796 11267337 ID=Msa0939210-mRNA-1;Parent=Msa0939210;Name=Msa0939210-mRNA-1;_AED=0.39;_eAED=0.39;_QI=1980|1|1|1|0.5|0.6|5|298|171
chr6_3 exon 11267337 11268287 11267337 ID=Msa0939210-mRNA-1:exon:3676;Parent=Msa0939210-mRNA-1
chr6_3 exon 11268543 11268818 11268543 ID=Msa0939210-mRNA-1:exon:3677;Parent=Msa0939210-mRNA-1
chr6_3 exon 11269536 11270253 11269536 ID=Msa0939210-mRNA-1:exon:3678;Parent=Msa0939210-mRNA-1
chr6_3 exon 11270278 11270363 11270278 ID=Msa0939210-mRNA-1:exon:3679;Parent=Msa0939210-mRNA-1
chr6_3 exon 11271034 11271796 11271034 ID=Msa0939210-mRNA-1:exon:3680;Parent=Msa0939210-mRNA-1
chr6_3 five_prime_UTR 11267337 11268287 11267337 ID=Msa0939210-mRNA-1:five_prime_utr;Parent=Msa0939210-mRNA-1
chr6_3 five_prime_UTR 11268543 11268818 11268543 ID=Msa0939210-mRNA-1:five_prime_utr;Parent=Msa0939210-mRNA-1
chr6_3 five_prime_UTR 11269536 11270253 11269536 ID=Msa0939210-mRNA-1:five_prime_utr;Parent=Msa0939210-mRNA-1
chr6_3 five_prime_UTR 11270278 11270312 11270278 ID=Msa0939210-mRNA-1:five_prime_utr;Parent=Msa0939210-mRNA-1
chr6_3 CDS 11270313 11270363 11270313 ID=Msa0939210-mRNA-1:cds;Parent=Msa0939210-mRNA-1
chr6_3 CDS 11271034 11271498 11271034 ID=Msa0939210-mRNA-1:cds;Parent=Msa0939210-mRNA-1
chr6_3 three_prime_UTR 11271499 11271796 11271499 ID=Msa0939210-mRNA-1:three_prime_utr;Parent=Msa0939210-mRNA-1
Gene Sequence

>Msa0939210

ATGGGATTGAATTGCCAAGTTGCCAATATTCTGAAAGAGATAATTTTACAGAATATGGATGTCAATGGGAGTGGTGGTTGTTTCCTTCCCGATGATAGTTATCCAAATTGGCTAACTTTTAGTTCGGAAGGTTCTTCTGTAACTTTTGATGTCCCTCAAGTTGAAGGGCGTAACTTGAAGACAATGATGTGCATTGTCTATACTTCTACTCCAGATAACATAACATTGGATGGCCTTAAAAATGTGTTGGTGAAAAATTACACAAAAGCTACCATTCAAGTTTATAAGAGAGAAGCATTAGTCTCCTTTGAAGATGAGGAAGGGCAAAGAGTAGTATCAAGTATGGAATCTGGTAACAAAGTGGAGGTTGTTGTTGTTTTTGAGAAAAGTTTCACTGTGAAAAAGACAGTAGTTTATCTCGTATTTGATGAACCATCTGTCAAGAGATTCTTTACTGAAGAGGAGACAATAGATGACTTCGATCAGAACAGAAATAAGAAAAATCGAGTGGAATGA
Protein sequence

>Msa0939210

MGLNCQVANILKEIILQNMDVNGSGGCFLPDDSYPNWLTFSSEGSSVTFDVPQVEGRNLKTMMCIVYTSTPDNITLDGLKNVLVKNYTKATIQVYKREALVSFEDEEGQRVVSSMESGNKVEVVVVFEKSFTVKKTVVYLVFDEPSVKRFFTEEETIDDFDQNRNKKNRVE*