AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1022820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022820 MtrunA17_Chr3g0078631 56.513 476 127 10 1 416 1 456 3.56e-155 446
Msa1022820 MtrunA17_Chr7g0239741 85.652 230 32 1 194 422 1 230 4.98e-136 389
Msa1022820 MtrunA17_Chr7g0239921 43.967 489 188 13 14 422 19 501 3.80e-108 328
Msa1022820 MtrunA17_Chr7g0239851 44.979 478 169 10 31 422 9 478 9.68e-108 326
Msa1022820 MtrunA17_Chr7g0238971 44.068 472 166 11 31 414 11 472 2.38e-106 322
Msa1022820 MtrunA17_Chr7g0239731 43.368 475 182 10 31 422 8 478 1.50e-101 310
Msa1022820 MtrunA17_Chr7g0239831 41.667 480 189 12 31 422 9 485 1.86e-95 295
Msa1022820 MtrunA17_Chr7g0239891 42.262 504 171 18 31 421 10 506 9.20e-95 293
Msa1022820 MtrunA17_Chr7g0239841 42.857 420 153 12 31 366 9 425 1.08e-86 270
Msa1022820 MtrunA17_Chr7g0239911 41.266 458 172 14 28 392 6 459 6.36e-86 270
Msa1022820 MtrunA17_Chr7g0239901 42.650 483 181 15 31 421 37 515 8.29e-79 253
Msa1022820 MtrunA17_Chr7g0241421 36.820 478 211 13 29 419 11 484 1.11e-76 248
Msa1022820 MtrunA17_Chr7g0239751 80.556 144 28 0 1 144 1 144 1.38e-76 238
Msa1022820 MtrunA17_Chr7g0241161 39.243 423 202 12 33 413 16 425 9.83e-70 226
Msa1022820 MtrunA17_Chr7g0218371 37.277 448 218 14 29 422 11 449 2.85e-69 226
Msa1022820 MtrunA17_Chr7g0238961 47.500 280 114 5 169 422 483 755 2.28e-67 228
Msa1022820 MtrunA17_Chr7g0238961 58.197 122 39 2 23 132 256 377 3.51e-34 135
Msa1022820 MtrunA17_Chr7g0238961 49.107 112 45 1 33 132 11 122 3.80e-29 120
Msa1022820 MtrunA17_Chr7g0241331 35.438 491 199 18 33 415 5 485 1.49e-63 212
Msa1022820 MtrunA17_Chr7g0239791 47.584 269 109 7 172 422 24 278 1.51e-63 206
Msa1022820 MtrunA17_Chr7g0239761 47.079 291 87 8 1 244 1 271 4.15e-61 200
Msa1022820 MtrunA17_Chr7g0241431 32.833 466 215 10 38 418 1 453 7.45e-60 201
Msa1022820 MtrunA17_Chr7g0237451 33.195 482 219 12 30 422 10 477 3.25e-56 192
Msa1022820 MtrunA17_Chr7g0241261 32.629 426 221 7 29 398 6 421 3.19e-51 178
Msa1022820 MtrunA17_Chr4g0008511 31.653 496 222 18 35 422 11 497 3.97e-50 176
Msa1022820 MtrunA17_Chr7g0239861 35.523 411 184 16 85 421 1 404 5.70e-50 174
Msa1022820 MtrunA17_Chr7g0241291 36.585 246 147 3 173 411 69 312 3.01e-37 138
Msa1022820 MtrunA17_Chr7g0241201 33.724 341 155 10 22 293 5 343 3.61e-36 136
Msa1022820 MtrunA17_Chr7g0263451 37.879 264 134 6 173 411 2 260 6.88e-35 130
Msa1022820 MtrunA17_Chr7g0241511 32.792 308 129 9 173 412 57 354 1.48e-31 123
Msa1022820 MtrunA17_Chr1g0166321 38.235 238 129 7 170 399 224 451 4.99e-31 124
Msa1022820 MtrunA17_Chr1g0166321 45.299 117 52 1 25 129 7 123 1.62e-20 93.6
Msa1022820 MtrunA17_Chr7g0241361 38.813 219 94 4 26 205 11 228 6.62e-30 116
Msa1022820 MtrunA17_Chr4g0007631 26.602 515 256 16 21 421 1 507 7.74e-30 121
Msa1022820 MtrunA17_Chr4g0007271 28.085 470 253 14 32 421 12 476 2.76e-29 119
Msa1022820 MtrunA17_Chr7g0241211 37.245 196 115 3 218 413 1 188 1.40e-28 110
Msa1022820 MtrunA17_Chr2g0291981 47.458 118 49 2 29 134 11 127 1.27e-27 107
Msa1022820 MtrunA17_Chr4g0007251 27.778 468 249 12 32 415 14 476 2.07e-27 114
Msa1022820 MtrunA17_Chr7g0241271 40.252 159 70 3 33 179 15 160 1.22e-24 103
Msa1022820 MtrunA17_Chr7g0241271 45.000 120 57 3 172 283 214 332 9.57e-13 68.9
Msa1022820 MtrunA17_Chr7g0241351 50.909 110 42 1 33 130 17 126 1.43e-24 100
Msa1022820 MtrunA17_Chr3g0110221 28.895 353 167 13 105 402 7 330 1.53e-24 104
Msa1022820 MtrunA17_Chr7g0241231 48.649 111 45 1 29 127 4 114 2.11e-24 98.6
Msa1022820 MtrunA17_Chr7g0241251 33.778 225 136 4 172 392 215 430 2.55e-24 104
Msa1022820 MtrunA17_Chr7g0241251 47.368 114 47 2 29 129 9 122 3.82e-22 98.2
Msa1022820 MtrunA17_Chr7g0241311 42.857 112 52 1 33 132 11 122 2.01e-23 98.2
Msa1022820 MtrunA17_Chr4g0007341 27.394 449 227 13 35 392 16 456 3.79e-23 101
Msa1022820 MtrunA17_Chr7g0241321 35.602 191 89 6 259 417 2 190 1.16e-19 86.7
Msa1022820 MtrunA17_Chr4g0008481 28.267 329 156 10 31 279 8 336 4.36e-17 83.2
Msa1022820 MtrunA17_Chr7g0241181 49.383 81 41 0 218 298 15 95 6.58e-16 73.9
Msa1022820 MtrunA17_Chr7g0237481 49.383 81 41 0 218 298 15 95 2.18e-15 73.9
Msa1022820 MtrunA17_Chr8g0345251 26.882 279 158 11 172 415 111 378 2.54e-15 77.0
Msa1022820 MtrunA17_Chr7g0263461 76.744 43 10 0 33 75 40 82 1.70e-14 68.9
Msa1022820 MtrunA17_Chr7g0241171 50.667 75 36 1 341 415 74 147 1.10e-13 68.2
Msa1022820 MtrunA17_Chr1g0150211 37.647 85 53 0 218 302 1 85 6.62e-13 66.2
Msa1022820 MtrunA17_Chr7g0241501 65.217 46 16 0 38 83 1 46 8.41e-13 62.8
Msa1022820 MtrunA17_Chr4g0007231 34.127 126 60 3 33 135 10 135 2.86e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022820 AT5G01120.1 28.689 488 229 18 32 411 9 485 2.31e-34 134
Msa1022820 AT5G01150.1 27.364 497 232 16 34 422 11 486 2.37e-34 134
Msa1022820 AT3G09110.1 29.167 312 158 5 34 282 11 322 1.05e-30 121
Msa1022820 AT5G01140.1 26.653 484 224 16 34 422 11 458 5.53e-27 112
Msa1022820 AT5G01130.1 31.679 262 154 9 172 422 204 451 1.14e-20 94.4
Msa1022820 AT5G01130.1 41.489 94 52 1 33 126 10 100 2.48e-15 78.2
Msa1022820 AT5G43240.1 43.363 113 52 3 32 132 9 121 5.64e-20 92.4
Msa1022820 AT5G43240.3 43.363 113 52 3 32 132 9 121 5.64e-20 92.4
Msa1022820 AT5G43240.4 43.363 113 52 3 32 132 9 121 5.64e-20 92.4
Msa1022820 AT3G09120.1 40.678 118 57 2 29 134 3 119 1.77e-19 89.0
Msa1022820 AT3G09140.2 40.171 117 56 2 33 136 10 125 2.39e-18 87.4
Msa1022820 AT3G09140.1 40.171 117 56 2 33 136 10 125 2.59e-18 87.4
Msa1022820 AT5G37320.1 39.823 113 55 2 32 131 9 121 9.31e-17 82.4
Msa1022820 AT5G37320.1 28.244 262 168 11 172 417 224 481 3.33e-12 68.6

Find 63 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCAAAGTGTTGAAAATA+TGG 0.178217 7_1:-49753919 Msa1022820:CDS
TCTGTAACCACGTACATTTC+TGG 0.179686 7_1:+49752509 None:intergenic
ATTAATATCATCATTAAATA+TGG 0.226870 7_1:+49752919 None:intergenic
CTTAGAAGGGAATAGTTCTT+TGG 0.229478 7_1:-49752774 Msa1022820:CDS
ACTTATTTGTCCTTTAATAT+TGG 0.253109 7_1:-49751772 Msa1022820:three_prime_UTR
ACTAAGTAAACCAATATTAA+AGG 0.279847 7_1:+49751762 None:intergenic
AGTAGTGTCTTTGAAACTTC+TGG 0.309230 7_1:-49754099 Msa1022820:CDS
AACAAAATCTTTATCTGCTT+CGG 0.321332 7_1:+49754046 None:intergenic
AAATAATATTCTGCAGGTAT+TGG 0.343277 7_1:-49753047 Msa1022820:CDS
CAAAACTTCTCTTAATGATC+TGG 0.348610 7_1:-49752426 Msa1022820:CDS
TTGAGACAATCAATTGTAAC+AGG 0.348837 7_1:+49753948 None:intergenic
AGTTCTTTGGGAAGTATTGA+TGG 0.349836 7_1:-49752761 Msa1022820:CDS
AGTATATATATAGATGAAAC+TGG 0.371045 7_1:+49752458 None:intergenic
ATCCTTGATTTCTCGATATG+AGG 0.374371 7_1:+49752962 None:intergenic
GTGATGAAGATGGGAGGGAT+TGG 0.398301 7_1:-49752607 Msa1022820:CDS
TTAGAAGGGAATAGTTCTTT+GGG 0.400686 7_1:-49752773 Msa1022820:CDS
AGTTTCTGTTGATGACATAA+AGG 0.409904 7_1:-49751850 Msa1022820:three_prime_UTR
CACATCAGTTAGAGGTGTCT+TGG 0.427094 7_1:+49753000 None:intergenic
TGTTGATTAAGTTATGTCAT+TGG 0.430688 7_1:-49751988 Msa1022820:three_prime_UTR
TTTGTAATGGTAACATTGCT+TGG 0.433815 7_1:-49751961 Msa1022820:three_prime_UTR
AAAACAGAAGTCTTCATACT+TGG 0.445283 7_1:+49753803 None:intergenic
AGTCTTGCAATGGTTCCTAA+TGG 0.456662 7_1:+49753996 None:intergenic
AGCTTCTTAACATTACCATT+AGG 0.457243 7_1:-49754011 Msa1022820:CDS
TGTCATTGGAAAATTTGTAA+TGG 0.459701 7_1:-49751974 Msa1022820:three_prime_UTR
CGTTTCTTAACATTTCCATT+GGG 0.468800 7_1:-49752812 Msa1022820:CDS
TATCAAAGTGTTGAAAATAT+GGG 0.476003 7_1:-49753918 Msa1022820:CDS
GCAGAGTCACAGCATATTCA+AGG 0.477264 7_1:-49752103 Msa1022820:intron
ACGTTTCTTAACATTTCCAT+TGG 0.480881 7_1:-49752813 Msa1022820:CDS
CTTGTTAACACAAATTAAGA+AGG 0.481190 7_1:-49752037 Msa1022820:CDS
TTCTTAACATTTCCATTGGG+TGG 0.500846 7_1:-49752809 Msa1022820:CDS
CAATGCTCTTATTTGAGCAT+AGG 0.501265 7_1:-49753780 Msa1022820:intron
GACATTATATTATATGCTCA+AGG 0.503201 7_1:-49752863 Msa1022820:CDS
TATCGAAGGATGCAAAGAAC+AGG 0.512053 7_1:-49752694 Msa1022820:CDS
AAAGACACTACTTCCACTCT+AGG 0.519879 7_1:+49754110 None:intergenic
TCAACGTCTGCTCTAACAAA+TGG 0.520066 7_1:-49752069 Msa1022820:CDS
GACTTGCCGCATGGTGGACC+TGG 0.523472 7_1:-49752548 Msa1022820:CDS
AATTACCTCTTTGATGCCAA+TGG 0.525143 7_1:+49752388 None:intergenic
AACCTCATATCGAGAAATCA+AGG 0.529213 7_1:-49752964 Msa1022820:CDS
GATTAGAAATAATATTCTGC+AGG 0.532566 7_1:-49753053 Msa1022820:CDS
TCCACCATGCGGCAAGTCAA+TGG 0.533548 7_1:+49752553 None:intergenic
TAATTTGTGTTAACAAGTGA+CGG 0.537543 7_1:+49752043 None:intergenic
GGTTTCTTGACATAAACTCC+AGG 0.555287 7_1:+49752530 None:intergenic
AAATTAATATTGATGACTCT+CGG 0.560468 7_1:-49753848 Msa1022820:CDS
CATTATATTATATGCTCAAG+GGG 0.573209 7_1:-49752861 Msa1022820:CDS
TTTCTGAATAAGTCTTGCAA+TGG 0.578241 7_1:+49753986 None:intergenic
ACATTATATTATATGCTCAA+GGG 0.581121 7_1:-49752862 Msa1022820:CDS
AAAGGAAAGGATGTCACCAT+TGG 0.583704 7_1:-49751832 Msa1022820:three_prime_UTR
AGAAAAGTATTTCATATCGA+AGG 0.586970 7_1:-49752708 Msa1022820:CDS
AACTTCTCTTAATGATCTGG+AGG 0.587581 7_1:-49752423 Msa1022820:CDS
TTGCGCAAAACTCCACCCAA+TGG 0.594851 7_1:+49752797 None:intergenic
AATACCATTGACTTGCCGCA+TGG 0.596786 7_1:-49752557 Msa1022820:CDS
CATCAACAGAAACTTTCATA+CGG 0.609235 7_1:+49751859 None:intergenic
TCTTCGATTATATCCTAGAG+TGG 0.613545 7_1:-49754123 Msa1022820:CDS
GAACATATAAAGTACTCTGT+GGG 0.620239 7_1:+49753825 None:intergenic
TGTTACGTAGTTGATGCCAA+TGG 0.621165 7_1:+49751816 None:intergenic
ACCATTGACTTGCCGCATGG+TGG 0.629935 7_1:-49752554 Msa1022820:CDS
GGAACATATAAAGTACTCTG+TGG 0.646388 7_1:+49753824 None:intergenic
CTGTTGATGACATAAAGGAA+AGG 0.649236 7_1:-49751845 Msa1022820:three_prime_UTR
TGTCACCATTGGCATCAAAG+AGG 0.672938 7_1:-49752393 Msa1022820:intron
CAAGAAACCAGAAATGTACG+TGG 0.689087 7_1:-49752516 Msa1022820:CDS
GATGAAACTGGAGACAACAA+CGG 0.697583 7_1:+49752470 None:intergenic
TAAACTCCAGGTCCACCATG+CGG 0.736990 7_1:+49752542 None:intergenic
ATTATATTATATGCTCAAGG+GGG 0.741500 7_1:-49752860 Msa1022820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAAAAAAAAATT+GGG + chr7_1:49752420-49752439 None:intergenic 0.0%
!!! TTTTAAAAAAAAAAAAAAAT+TGG + chr7_1:49752421-49752440 None:intergenic 0.0%
!! AAAAAAAGTTATTGTTTATA+TGG - chr7_1:49752186-49752205 Msa1022820:intron 10.0%
!! AAAAAAGTTATTGTTTATAT+GGG - chr7_1:49752187-49752206 Msa1022820:intron 10.0%
!! TGCAAAAAAAATTAAATTAT+GGG + chr7_1:49752633-49752652 None:intergenic 10.0%
!! ATGCAAAAAAAATTAAATTA+TGG + chr7_1:49752634-49752653 None:intergenic 10.0%
!! ATTAATATCATCATTAAATA+TGG + chr7_1:49753023-49753042 None:intergenic 10.0%
!!! ATATTTAAGACACTAAATAA+TGG - chr7_1:49752440-49752459 Msa1022820:CDS 15.0%
!! AAATTACATAAATTACACTT+TGG + chr7_1:49752564-49752583 None:intergenic 15.0%
!! ATCAAAGTGATAATTATTTA+AGG - chr7_1:49753589-49753608 Msa1022820:intron 15.0%
!!! TATCAAAGTGTTGAAAATAT+GGG - chr7_1:49752021-49752040 Msa1022820:exon 20.0%
!!! AAATTAATATTGATGACTCT+CGG - chr7_1:49752091-49752110 Msa1022820:CDS 20.0%
!!! GACTTGAGTAATTTTTTTTT+CGG - chr7_1:49752606-49752625 Msa1022820:CDS 20.0%
!!! ACTTGAGTAATTTTTTTTTC+GGG - chr7_1:49752607-49752626 Msa1022820:CDS 20.0%
!! TGAAGAATAAACTTAAAAAG+TGG + chr7_1:49752844-49752863 None:intergenic 20.0%
!!! TTCAATTCACTTTTTATTCT+TGG - chr7_1:49752860-49752879 Msa1022820:CDS 20.0%
!! ACATTATATTATATGCTCAA+GGG - chr7_1:49753077-49753096 Msa1022820:CDS 20.0%
!!! AGTGTTTTGAAATATTATTG+TGG - chr7_1:49753280-49753299 Msa1022820:intron 20.0%
!!! TTTTAAAAAGTGATGAAGAT+GGG - chr7_1:49753323-49753342 Msa1022820:intron 20.0%
!! AGTATATATATAGATGAAAC+TGG + chr7_1:49753484-49753503 None:intergenic 20.0%
!!! TTGTTTTATTTTAAGCACTA+TGG - chr7_1:49754020-49754039 Msa1022820:CDS 20.0%
!! ACTTATTTGTCCTTTAATAT+TGG - chr7_1:49754167-49754186 Msa1022820:CDS 20.0%
!! ACTAAGTAAACCAATATTAA+AGG + chr7_1:49754180-49754199 None:intergenic 20.0%
! AACAAAATCTTTATCTGCTT+CGG + chr7_1:49751896-49751915 None:intergenic 25.0%
!!! CTATCAAAGTGTTGAAAATA+TGG - chr7_1:49752020-49752039 Msa1022820:exon 25.0%
!! CAATATTAATTTTGAGCATG+CGG + chr7_1:49752083-49752102 None:intergenic 25.0%
! TACATAAATTACACTTTGGT+GGG + chr7_1:49752560-49752579 None:intergenic 25.0%
! TTACATAAATTACACTTTGG+TGG + chr7_1:49752561-49752580 None:intergenic 25.0%
! CATCCCTTATAAAACTAAAA+CGG - chr7_1:49752651-49752670 Msa1022820:CDS 25.0%
! ATCCCTTATAAAACTAAAAC+GGG - chr7_1:49752652-49752671 Msa1022820:CDS 25.0%
! GATTAGAAATAATATTCTGC+AGG - chr7_1:49752886-49752905 Msa1022820:CDS 25.0%
! AAATAATATTCTGCAGGTAT+TGG - chr7_1:49752892-49752911 Msa1022820:CDS 25.0%
! GACATTATATTATATGCTCA+AGG - chr7_1:49753076-49753095 Msa1022820:CDS 25.0%
! CATTATATTATATGCTCAAG+GGG - chr7_1:49753078-49753097 Msa1022820:CDS 25.0%
! ATTATATTATATGCTCAAGG+GGG - chr7_1:49753079-49753098 Msa1022820:CDS 25.0%
!!! AGAAAAGTATTTCATATCGA+AGG - chr7_1:49753231-49753250 Msa1022820:intron 25.0%
!!! CTTTTAAAAAGTGATGAAGA+TGG - chr7_1:49753322-49753341 Msa1022820:intron 25.0%
!! TAATTTGTGTTAACAAGTGA+CGG + chr7_1:49753899-49753918 None:intergenic 25.0%
! CTTGTTAACACAAATTAAGA+AGG - chr7_1:49753902-49753921 Msa1022820:CDS 25.0%
!! TGTTGATTAAGTTATGTCAT+TGG - chr7_1:49753951-49753970 Msa1022820:CDS 25.0%
! TGTCATTGGAAAATTTGTAA+TGG - chr7_1:49753965-49753984 Msa1022820:CDS 25.0%
AGCTTCTTAACATTACCATT+AGG - chr7_1:49751928-49751947 Msa1022820:three_prime_UTR 30.0%
TTTCTGAATAAGTCTTGCAA+TGG + chr7_1:49751956-49751975 None:intergenic 30.0%
TTGAGACAATCAATTGTAAC+AGG + chr7_1:49751994-49752013 None:intergenic 30.0%
! GAACATATAAAGTACTCTGT+GGG + chr7_1:49752117-49752136 None:intergenic 30.0%
AAAACAGAAGTCTTCATACT+TGG + chr7_1:49752139-49752158 None:intergenic 30.0%
CTAAGCATAAATCATCATTC+AGG + chr7_1:49752248-49752267 None:intergenic 30.0%
CTGAATGATGATTTATGCTT+AGG - chr7_1:49752246-49752265 Msa1022820:intron 30.0%
ATCAAATATAGTGTGATCCA+TGG + chr7_1:49752331-49752350 None:intergenic 30.0%
TCCCTTATAAAACTAAAACG+GGG - chr7_1:49752653-49752672 Msa1022820:CDS 30.0%
AAGTTCGATCAAAGAAATGA+CGG - chr7_1:49752734-49752753 Msa1022820:CDS 30.0%
!! TTTTCTGATAACTAGCTTCA+CGG + chr7_1:49753050-49753069 None:intergenic 30.0%
ACGTTTCTTAACATTTCCAT+TGG - chr7_1:49753126-49753145 Msa1022820:intron 30.0%
CGTTTCTTAACATTTCCATT+GGG - chr7_1:49753127-49753146 Msa1022820:intron 30.0%
TTAGAAGGGAATAGTTCTTT+GGG - chr7_1:49753166-49753185 Msa1022820:intron 30.0%
ACATCTTAGAAAAATGCAAC+TGG - chr7_1:49753357-49753376 Msa1022820:intron 30.0%
CAAAACTTCTCTTAATGATC+TGG - chr7_1:49753513-49753532 Msa1022820:intron 30.0%
! TTATCACCTTCACTATTTTG+CGG - chr7_1:49753630-49753649 Msa1022820:intron 30.0%
TTTGTAATGGTAACATTGCT+TGG - chr7_1:49753978-49753997 Msa1022820:CDS 30.0%
!!! TAACATTGCTTGGTTTTAAC+TGG - chr7_1:49753988-49754007 Msa1022820:CDS 30.0%
!!! TTGGTTTTAACTGGTTATTG+TGG - chr7_1:49753997-49754016 Msa1022820:CDS 30.0%
CATCAACAGAAACTTTCATA+CGG + chr7_1:49754083-49754102 None:intergenic 30.0%
!! AGTTTCTGTTGATGACATAA+AGG - chr7_1:49754089-49754108 Msa1022820:CDS 30.0%
TCTTCGATTATATCCTAGAG+TGG - chr7_1:49751816-49751835 Msa1022820:three_prime_UTR 35.0%
!! AGTAGTGTCTTTGAAACTTC+TGG - chr7_1:49751840-49751859 Msa1022820:three_prime_UTR 35.0%
! GGAACATATAAAGTACTCTG+TGG + chr7_1:49752118-49752137 None:intergenic 35.0%
! CAATGCTCTTATTTGAGCAT+AGG - chr7_1:49752159-49752178 Msa1022820:intron 35.0%
ATCATTCAGGTAAGCTGAAA+GGG + chr7_1:49752235-49752254 None:intergenic 35.0%
ACACTATATTTGATCTGACC+AGG - chr7_1:49752337-49752356 Msa1022820:intron 35.0%
CACTATATTTGATCTGACCA+GGG - chr7_1:49752338-49752357 Msa1022820:intron 35.0%
AAAATTGGGCCCCAAAAAAT+TGG + chr7_1:49752406-49752425 None:intergenic 35.0%
!!! GCCCCGTTTTAGTTTTATAA+GGG + chr7_1:49752657-49752676 None:intergenic 35.0%
!! GGCCTATGAATTTGTTAAGA+CGG - chr7_1:49752674-49752693 Msa1022820:CDS 35.0%
! GCTTTTTATTCCGAAGTTGT+TGG + chr7_1:49752712-49752731 None:intergenic 35.0%
CCTAAAAACACATCAGTTAG+AGG + chr7_1:49752950-49752969 None:intergenic 35.0%
! CCTCTAACTGATGTGTTTTT+AGG - chr7_1:49752947-49752966 Msa1022820:CDS 35.0%
AACCTCATATCGAGAAATCA+AGG - chr7_1:49752975-49752994 Msa1022820:CDS 35.0%
ATCCTTGATTTCTCGATATG+AGG + chr7_1:49752980-49752999 None:intergenic 35.0%
TTCTTAACATTTCCATTGGG+TGG - chr7_1:49753130-49753149 Msa1022820:intron 35.0%
CTTAGAAGGGAATAGTTCTT+TGG - chr7_1:49753165-49753184 Msa1022820:intron 35.0%
!! AGTTCTTTGGGAAGTATTGA+TGG - chr7_1:49753178-49753197 Msa1022820:intron 35.0%
TAAAAAGTGATGAAGATGGG+AGG - chr7_1:49753326-49753345 Msa1022820:intron 35.0%
AAAAAGTGATGAAGATGGGA+GGG - chr7_1:49753327-49753346 Msa1022820:intron 35.0%
AACTTCTCTTAATGATCTGG+AGG - chr7_1:49753516-49753535 Msa1022820:intron 35.0%
AATTACCTCTTTGATGCCAA+TGG + chr7_1:49753554-49753573 None:intergenic 35.0%
!! CTGTTGATGACATAAAGGAA+AGG - chr7_1:49754094-49754113 Msa1022820:CDS 35.0%
AAAGACACTACTTCCACTCT+AGG + chr7_1:49751832-49751851 None:intergenic 40.0%
AGTCTTGCAATGGTTCCTAA+TGG + chr7_1:49751946-49751965 None:intergenic 40.0%
AAGCTGAAAGGGAAACTGAA+CGG + chr7_1:49752224-49752243 None:intergenic 40.0%
CATCATTCAGGTAAGCTGAA+AGG + chr7_1:49752236-49752255 None:intergenic 40.0%
ATAGTGTGATCCATGGAATG+CGG + chr7_1:49752324-49752343 None:intergenic 40.0%
!!! GGCCCCGTTTTAGTTTTATA+AGG + chr7_1:49752658-49752677 None:intergenic 40.0%
GGCCGTCTTAACAAATTCAT+AGG + chr7_1:49752679-49752698 None:intergenic 40.0%
AATGACGGTCAATGTCACAA+AGG - chr7_1:49752749-49752768 Msa1022820:CDS 40.0%
GGTCAATGTCACAAAGGAAA+AGG - chr7_1:49752755-49752774 Msa1022820:CDS 40.0%
! GAGTTTTGCGCAACTTAGAA+GGG - chr7_1:49753152-49753171 Msa1022820:intron 40.0%
TATCGAAGGATGCAAAGAAC+AGG - chr7_1:49753245-49753264 Msa1022820:intron 40.0%
GGTTTCTTGACATAAACTCC+AGG + chr7_1:49753412-49753431 None:intergenic 40.0%
CAAGAAACCAGAAATGTACG+TGG - chr7_1:49753423-49753442 Msa1022820:intron 40.0%
TCTGTAACCACGTACATTTC+TGG + chr7_1:49753433-49753452 None:intergenic 40.0%
GATGAAACTGGAGACAACAA+CGG + chr7_1:49753472-49753491 None:intergenic 40.0%
GAGGAAAAAGTTGTCACCAT+TGG - chr7_1:49753535-49753554 Msa1022820:intron 40.0%
ACACAACCGCAAAATAGTGA+AGG + chr7_1:49753639-49753658 None:intergenic 40.0%
TCAACGTCTGCTCTAACAAA+TGG - chr7_1:49753870-49753889 Msa1022820:CDS 40.0%
AAAGGAAAGGATGTCACCAT+TGG - chr7_1:49754107-49754126 Msa1022820:CDS 40.0%
! TGTTACGTAGTTGATGCCAA+TGG + chr7_1:49754126-49754145 None:intergenic 40.0%
AGCTGAAAGGGAAACTGAAC+GGG + chr7_1:49752223-49752242 None:intergenic 45.0%
ATATTTGATCTGACCAGGGC+CGG - chr7_1:49752342-49752361 Msa1022820:intron 45.0%
ATTGGGCCCCAAAAAATTGG+AGG + chr7_1:49752403-49752422 None:intergenic 45.0%
ATCTGCTTAGTGTGCTTCTG+TGG - chr7_1:49752493-49752512 Msa1022820:CDS 45.0%
! GGTAGCTTTTGGTGAATGAG+AGG - chr7_1:49752520-49752539 Msa1022820:CDS 45.0%
!! TGAATTTGTTAAGACGGCCC+TGG - chr7_1:49752680-49752699 Msa1022820:CDS 45.0%
GAAGTTGTTGGTCAGATCCA+GGG + chr7_1:49752700-49752719 None:intergenic 45.0%
CTGGATCTGACCAACAACTT+CGG - chr7_1:49752699-49752718 Msa1022820:CDS 45.0%
!! CACATCAGTTAGAGGTGTCT+TGG + chr7_1:49752942-49752961 None:intergenic 45.0%
! GGAGTTTTGCGCAACTTAGA+AGG - chr7_1:49753151-49753170 Msa1022820:intron 45.0%
!! AATACCATTGACTTGCCGCA+TGG - chr7_1:49753382-49753401 Msa1022820:intron 45.0%
TGTCACCATTGGCATCAAAG+AGG - chr7_1:49753546-49753565 Msa1022820:intron 45.0%
GCAGAGTCACAGCATATTCA+AGG - chr7_1:49753836-49753855 Msa1022820:CDS 45.0%
AGGGAAACTGAACGGGACAA+CGG + chr7_1:49752216-49752235 None:intergenic 50.0%
AACTGTCTTGCCGCATTCCA+TGG - chr7_1:49752311-49752330 Msa1022820:intron 50.0%
!!! CACCGGGCCTCCAATTTTTT+GGG - chr7_1:49752393-49752412 Msa1022820:intron 50.0%
!!! ACCGGGCCTCCAATTTTTTG+GGG - chr7_1:49752394-49752413 Msa1022820:CDS 50.0%
CGAAGTTGTTGGTCAGATCC+AGG + chr7_1:49752701-49752720 None:intergenic 50.0%
TTGCGCAAAACTCCACCCAA+TGG + chr7_1:49753145-49753164 None:intergenic 50.0%
GTGATGAAGATGGGAGGGAT+TGG - chr7_1:49753332-49753351 Msa1022820:intron 50.0%
TAAACTCCAGGTCCACCATG+CGG + chr7_1:49753400-49753419 None:intergenic 50.0%
!!! GCACCGGGCCTCCAATTTTT+TGG - chr7_1:49752392-49752411 Msa1022820:intron 55.0%
GCCCCAAAAAATTGGAGGCC+CGG + chr7_1:49752398-49752417 None:intergenic 55.0%
TTAGTGTGCTTCTGTGGCGC+AGG - chr7_1:49752499-49752518 Msa1022820:CDS 55.0%
! TCTGTGGCGCAGGTAGCTTT+TGG - chr7_1:49752509-49752528 Msa1022820:CDS 55.0%
!! ACCATTGACTTGCCGCATGG+TGG - chr7_1:49753385-49753404 Msa1022820:intron 55.0%
TCCACCATGCGGCAAGTCAA+TGG + chr7_1:49753389-49753408 None:intergenic 55.0%
!! GACTTGCCGCATGGTGGACC+TGG - chr7_1:49753391-49753410 Msa1022820:intron 65.0%
!! AGCCTCGACGGGCTATGGGC+CGG + chr7_1:49752364-49752383 None:intergenic 70.0%
GCCCATAGCCCGTCGAGGCT+GGG - chr7_1:49752364-49752383 Msa1022820:intron 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG + chr7_1:49752368-49752387 None:intergenic 70.0%
!! AGCCCAGCCTCGACGGGCTA+TGG + chr7_1:49752369-49752388 None:intergenic 70.0%
AGCCCGTCGAGGCTGGGCTA+CGG - chr7_1:49752370-49752389 Msa1022820:intron 70.0%
TGCCGTAGCCCAGCCTCGAC+GGG + chr7_1:49752375-49752394 None:intergenic 70.0%
GTGCCGTAGCCCAGCCTCGA+CGG + chr7_1:49752376-49752395 None:intergenic 70.0%
TCGAGGCTGGGCTACGGCAC+CGG - chr7_1:49752376-49752395 Msa1022820:intron 70.0%
GGCCCATAGCCCGTCGAGGC+TGG - chr7_1:49752363-49752382 Msa1022820:intron 75.0%
CGAGGCTGGGCTACGGCACC+GGG - chr7_1:49752377-49752396 Msa1022820:intron 75.0%
!!! GACGGGCTATGGGCCGGCCC+TGG + chr7_1:49752358-49752377 None:intergenic 80.0%
! GGCCGGCCCATAGCCCGTCG+AGG - chr7_1:49752359-49752378 Msa1022820:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 49751748 49754213 49751748 ID=Msa1022820;Name=Msa1022820
chr7_1 mRNA 49751748 49754213 49751748 ID=Msa1022820-mRNA-1;Parent=Msa1022820;Name=Msa1022820-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.5|0.33|1|0.5|0.66|3|281|422
chr7_1 exon 49751748 49752121 49751748 ID=Msa1022820-mRNA-1:exon:9731;Parent=Msa1022820-mRNA-1
chr7_1 exon 49752394 49753136 49752394 ID=Msa1022820-mRNA-1:exon:9730;Parent=Msa1022820-mRNA-1
chr7_1 exon 49753781 49754213 49753781 ID=Msa1022820-mRNA-1:exon:9729;Parent=Msa1022820-mRNA-1
chr7_1 CDS 49753781 49754213 49753781 ID=Msa1022820-mRNA-1:cds;Parent=Msa1022820-mRNA-1
chr7_1 CDS 49752394 49753136 49752394 ID=Msa1022820-mRNA-1:cds;Parent=Msa1022820-mRNA-1
chr7_1 CDS 49752029 49752121 49752029 ID=Msa1022820-mRNA-1:cds;Parent=Msa1022820-mRNA-1
chr7_1 three_prime_UTR 49751748 49752028 49751748 ID=Msa1022820-mRNA-1:three_prime_utr;Parent=Msa1022820-mRNA-1
Gene Sequence

>Msa1022820

ATGCTTCTTTCTTTTCTTTCACGTTTGATTTCTCGTTTGATAGCTGCTATCATAAGATTCATGATTGTTCTTCGATTATATCCTAGAGTGGAAGTAGTGTCTTTGAAACTTCTGGTAAACACAGACACTAACAAAGTTTTATTTGCCGAAGCAGATAAAGATTTTGTTGATATTCTTTGTAGCTTCTTAACATTACCATTAGGAACCATTGCAAGACTTATTCAGAAAAAGTCGAATATCGAACCTGTTACAATTGATTGTCTCAACTCTCTCTATCAAAGTGTTGAAAATATGGGCTTGTTCACAGATTATAACTCATCTGAAGATTATTGCCGCATGCTCAAAATTAATATTGATGACTCTCGGCCCACAGAGTACTTTATATGTTCCAAGTATGAAGACTTCTGTTTTCAATGCTCTTATTTGAGCATAGTAATTGCTCTAGTTTGCCACTTTTTAAGTTTATTCTTCAATTCACTTTTTATTCTTGGATTGATTAGAAATAATATTCTGCAGGTATTGGATCTGTTAAAGTGTTCATTGTTTTCCAAGACACCTCTAACTGATGTGTTTTTAGGCATGAAACCTCATATCGAGAAATCAAGGATTTTCTCTGATGATGTTAAAACCATATTTAATGATGATATTAATATCACCGTGAAGCTAGTTATCAGAAAATCTGATGACATTATATTATATGCTCAAGGGGGACATGATTTTGCAGAGTTAATTATACGTTTCTTAACATTTCCATTGGGTGGAGTTTTGCGCAACTTAGAAGGGAATAGTTCTTTGGGAAGTATTGATGGATTGTGCAAGAGCATAGCTGATTTAAATGAAGAAAAGTATTTCATATCGAAGGATGCAAAGAACAGGCTTCTCAAGACAAGTGTTTTGAAATATTATTGTGGAAAGTTAACTGATCTCACACTTTTAAAAAGTGATGAAGATGGGAGGGATTGGAGACATCTTAGAAAAATGCAACTGGTTAATACCATTGACTTGCCGCATGGTGGACCTGGAGTTTATGTCAAGAAACCAGAAATGTACGTGGTTACAGATGATCTGATCGTAGAACCGTTGTTGTCTCCAGTTTCATCTATATATATACTTCAACGTTTCAAAACTTCTCTTAATGATCTGGAGGAAAAAGTTGTCACCATTGGCATCAAAGAGAGTCACAGCATATTCAAGGCAGCTTTAAGCTCAACGTCTGCTCTAACAAATGGTCTCCGTCACTTGTTAACACAAATTAAGAAGGAGAAATGA

Protein sequence

>Msa1022820

MLLSFLSRLISRLIAAIIRFMIVLRLYPRVEVVSLKLLVNTDTNKVLFAEADKDFVDILCSFLTLPLGTIARLIQKKSNIEPVTIDCLNSLYQSVENMGLFTDYNSSEDYCRMLKINIDDSRPTEYFICSKYEDFCFQCSYLSIVIALVCHFLSLFFNSLFILGLIRNNILQVLDLLKCSLFSKTPLTDVFLGMKPHIEKSRIFSDDVKTIFNDDINITVKLVIRKSDDIILYAQGGHDFAELIIRFLTFPLGGVLRNLEGNSSLGSIDGLCKSIADLNEEKYFISKDAKNRLLKTSVLKYYCGKLTDLTLLKSDEDGRDWRHLRKMQLVNTIDLPHGGPGVYVKKPEMYVVTDDLIVEPLLSPVSSIYILQRFKTSLNDLEEKVVTIGIKESHSIFKAALSSTSALTNGLRHLLTQIKKEK*