AlfalfaGEDB | Msa0939740

M. sativa cultivar zhongmu-4 / Msa0939740

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939740	XP_013451086.1	92.384	906	59	4	1	902	1	900	0.0	1693

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939740	sp\|Q9SCZ4\|FERON_ARATH	48.096	919	399	28	18	902	21	895	0.0	744

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939740	A0A072U6W4	92.384	906	59	4	1	902	1	900	0.0	1693

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0747650	Msa0939740	0.803282	3.755901e-49	-8.615850e-47
Msa0939740	Msa1029390	0.805296	1.429791e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0939740	MtrunA17_Chr6g0455321	92.384	906	59	4	1	902	1	900	1693
Msa0939740	MtrunA17_Chr6g0455311	88.276	435	44	2	1	431	1	432	790
Msa0939740	MtrunA17_Chr7g0245131	47.573	927	408	25	11	902	10	893	729
Msa0939740	MtrunA17_Chr7g0219781	46.257	895	430	24	26	902	31	892	714
Msa0939740	MtrunA17_Chr7g0219671	45.880	898	428	27	26	902	29	889	705
Msa0939740	MtrunA17_Chr7g0219691	45.724	912	406	31	26	902	31	888	692
Msa0939740	MtrunA17_Chr7g0219721	45.585	906	416	30	26	902	31	888	688
Msa0939740	MtrunA17_Chr7g0219651	47.087	841	374	21	12	823	1008	1806	679
Msa0939740	MtrunA17_Chr7g0219651	42.497	913	415	30	26	902	29	867	610
Msa0939740	MtrunA17_Chr7g0219601	44.150	906	408	27	26	902	29	865	672

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0939740	AT3G51550.1	48.096	919	399	28	18	902	21	895	0.0	744
Msa0939740	AT5G39000.1	44.543	898	426	25	27	902	26	873	0.0	661
Msa0939740	AT5G38990.1	44.022	920	443	28	10	902	6	880	0.0	650
Msa0939740	AT5G28680.1	44.790	835	398	23	10	820	7	802	0.0	641
Msa0939740	AT5G28680.2	44.790	835	398	23	10	820	7	802	0.0	641
Msa0939740	AT3G04690.1	43.246	881	413	28	14	852	7	842	0.0	629
Msa0939740	AT5G59700.1	38.351	837	435	22	10	833	8	776	4.49e-171	518
Msa0939740	AT3G46290.1	38.741	826	439	25	7	825	6	771	2.30e-168	511
Msa0939740	AT1G30570.1	38.067	838	446	25	7	818	9	799	5.53e-167	508
Msa0939740	AT5G54380.1	36.721	915	495	27	8	902	5	855	8.94e-165	503

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Find 198 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTCAATTGGCTCAT+AGG	0.405257	6_3:-11846017	None:intergenic
AAAATTCAAATGCATCCTTT+TGG	0.347587	6_3:+11847989	Msa0939740:CDS
AAACCGTTGGTATAAGTAGT+AGG	0.406261	6_3:-11846268	None:intergenic
AAACTCCTGCAGAGATCCGA+CGG	0.619264	6_3:-11848376	None:intergenic
AAAGAATATGTTATTAACGT+TGG	0.468220	6_3:+11846397	Msa0939740:CDS
AAATCTGATGTTTACTCTTT+TGG	0.231843	6_3:+11848982	Msa0939740:CDS
AAATGGACACTGAATCAAAA+AGG	0.398695	6_3:+11847893	Msa0939740:CDS
AAATTTAGGACCTGTACTGA+CGG	0.605805	6_3:-11846227	None:intergenic
AACCGTTGGTATAAGTAGTA+GGG	0.547927	6_3:-11846267	None:intergenic
AACCTCAATTGTGGCACAAC+AGG	0.373259	6_3:+11846040	Msa0939740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAGACGGAGAAATTT+AGG	-	chr6_3:11846244-11846263	None:intergenic	30.0%
TAATGGTTTCACACTTCTTA+AGG	+	chr6_3:11846324-11846343	Msa0939740:CDS	30.0%
ATAATATAGATCATCAGGCA+TGG	-	chr6_3:11846509-11846528	None:intergenic	30.0%
GGTGTATAATATAGATCATC+AGG	-	chr6_3:11846514-11846533	None:intergenic	30.0%
GTGTGAATAAGTGAAAATTG+CGG	+	chr6_3:11847288-11847307	Msa0939740:intron	30.0%
TGTGAATAAGTGAAAATTGC+GGG	+	chr6_3:11847289-11847308	Msa0939740:intron	30.0%
ATGTTTGATGTGTTCAAACA+CGG	-	chr6_3:11847322-11847341	None:intergenic	30.0%
TTTGATTCTGTAATCTGCAA+TGG	-	chr6_3:11847495-11847514	None:intergenic	30.0%
AAATGGACACTGAATCAAAA+AGG	+	chr6_3:11847893-11847912	Msa0939740:CDS	30.0%
TTTCTATTACTTTCACCCTT+TGG	-	chr6_3:11847953-11847972	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	11845713	11849742	11845713	ID=Msa0939740;Name=Msa0939740
chr6_3	mRNA	11845713	11849742	11845713	ID=Msa0939740-mRNA-1;Parent=Msa0939740;Name=Msa0939740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=228\|1\|1\|1\|1\|1\|2\|209\|902
chr6_3	exon	11845713	11846616	11845713	ID=Msa0939740-mRNA-1:exon:3858;Parent=Msa0939740-mRNA-1
chr6_3	exon	11847501	11849742	11847501	ID=Msa0939740-mRNA-1:exon:3859;Parent=Msa0939740-mRNA-1
chr6_3	five_prime_UTR	11845713	11845940	11845713	ID=Msa0939740-mRNA-1:five_prime_utr;Parent=Msa0939740-mRNA-1
chr6_3	CDS	11845941	11846616	11845941	ID=Msa0939740-mRNA-1:cds;Parent=Msa0939740-mRNA-1
chr6_3	CDS	11847501	11849533	11847501	ID=Msa0939740-mRNA-1:cds;Parent=Msa0939740-mRNA-1
chr6_3	three_prime_UTR	11849534	11849742	11849534	ID=Msa0939740-mRNA-1:three_prime_utr;Parent=Msa0939740-mRNA-1

Gene Sequence

>Msa0939740

ATGAAACCATTGATAAACTTCAAAACCATAATCATCACCCTCTTATACTTTTCCACCTCCCTCTTACACCTTCATGCCTATGAGCCAATTGACCGTTTTAACCTCAATTGTGGCACAACAGGAAACTCTACCGACGGACAACGAACATGGACAGGAGACATAAACTCAAAACTTTTGTCATCATTACAAAACAACCCAACAACAGTTTCTGTTCCAAAAACAACACAAAACAAAGTTCCATATTCATCAGCTCGTTTATCACACTCAATATTCAACTATTCTTTACCCGTCAGTACAGGTCCTAAATTTCTCCGTCTGTTTTTCTACCCTACTACTTATACCAACGGTTTTAACCGTTATGATGCTTCTTTTACCGTTATTTCTAATGGTTTCACACTTCTTAAGGATTTTAATGCTTCATTAAACGCTGATGTTGAAGGTGTTGATACTATATTGAAAGAATATGTTATTAACGTTGGTGATGATCAAAGGCTTGATTTGAGTTTTATTCCAAGTAGTGGAAATTCTAATAACTATGGTTTTATTAATGGAATTGAAATCTTATCCATGCCTGATGATCTATATTATACACCACCTGATGATCCTGGATTTTCACTTGTGGGGGCCACCATCATACCACAATATACTATTCCAACCAGTGTTGCATTAGAGACAGATTACAGAATCAAAGTTGGAGTGCAAGATAACTCACCAAACATTCAAGACATAGGCATGCTCAGAAATTGGAACATCAATGACACAACCTATTTAAAAACACCAACAGCACGTGACTTCGTCCAAGCAGATATAACAGGTACGAGGAACATAACTGTAACACCTGATTACATAGCACCAAAAGACCTCTACAGATCATCACGTGACTTAGGAACCAATGCTACTCTCAACAGACTCTTGAACCTAACATGGGAATTCCCCGTTGATTCGGGCTTCACTTACTTCATCAGGCTTCATTTTTGTGAACTCGACCCGAACATAACTAGTGCAGGTGATAGAGTCTTCACTATTTATTTACAAGGAAATGTGGCTGTAGAACAAGCTGATGTTTTGAAATGGACACTGAATCAAAAAGGTCTTGCTGTGCAACAAAACTATGCGGTTTTGATTCCAAAGGGTGAAAGTAATAGAAACAAAAAAGTTAACCTCAAAATTCAAATGCATCCTTTTGGTAATGGTGATAGTCGATACACAAAATTTAGCGACCCTTTTTTAAATGGCCTTGAAATTTTCAAAATCAGTGAGATCAGTTCGAAGAATCTAGCTGGACCAAATCCAGATCCGGTTCAGATTCCGGCTCAAGAGAAGAACAACAAAAAAAGCAGAAGTGGAACGACAATAATTGGTGTCGTTTTAGGAGTTGTATTTGGTGTTGTTTTACTTTGCATTGTCGTTTTCTTCGTTTACAGAAGAAAACGACAAACAGAAGAGAAAAACACTAAAACCACAAAAGATTCAAAGTCTTCGACGACTTCAAAGTGGGGTCCATTGTCATTTGCAACAACAACAAAATCAACAAATTCAAACTCATCTCTACCGTCGGATCTCTGCAGGAGTTTCTCCCTCCTAGAGATCCGTGCTGCCACAAACAACTTCGACGAACTCTTCATCGTCGGAGTTGGAGGATTCGGCCATGTGTACAAAGGCTACATTGACAACGGCTCAACACAGGTTGCAATCAAACGGCTTAAACCGGGTTCACAACAAGGTGAAAATGAGTTCATCAATGAAATCGACATGCTCTCAAAGCTTCGTCATCTTCATCTCGTTTCTCTAATCGGTTATTGCAATGAGAACAACGAAATGATCATTGTCTATGATTTCATGGCACGTGGAACATTACGCGATCATCTTTATAATACCGAGAATCCTGCTTTATCGTGGAAACAACGGTTGCAAATTTCGATAGGAGCAGCACGTGGATTACACTACCTTCATACTGGTGCAAAGAACACGATTATTCACCGTGATGTGAAGACGACGAATATTCTGTTAGATGATAAATGGATAGCAAAGGTATCTGATTTTGGTCTTTCGAGGATCGGGCCTACGGGCATTTCAAAAGCCCACGTTAGTACGGTTGTTAAAGGGAGTGTTGGGTATTTAGACCCGGAGTATTATAAACGTCAGCGTTTGACTGAGAAATCTGATGTTTACTCTTTTGGTGTTGTTTTGTTCGAGATATTGTGCGCAAGGCCACCACTGATTAGAACCGCTGAAAAGAGACAAGTGTCGCTTGCTGATTGGGGGAGATATTGCTATAAAAATGGGATGTTGGGGAGTATCGTGGACCCGTCGGTGAAGTGGAGTATTGCGCCCGAGTGTTTGAGGAAATTCGGGGAGATTGCAGTTAGTTGTTTGTTGGATGATGGAACACTGAGGCCGTCGATGAATGATGTTGTTTGGATGTTGGAGTTTGCCTTGCAGTTACAAGAGAGTGCGGAACAGCGTGAGCCTCAGGCTGTTCCACACACTCTTGGTCGTGGGAATGATGACGTGGAAGGTGAGAGAATAGATGAAAATGATAACGACGTGTTTAGTAGTGGGTCCGATGTAGGAATTGTTTCCGACTTTAACAAGACTAGTGCAGTGAGTGTGAGTACTATAAGTACCGGAAGTACTAGTGGTGATCATAGCTATGGTTATAACAGAGAAAGTGTTTTTTCTGAAATTATTGATCCAAAAGCACGTTGA

Protein sequence

>Msa0939740

MKPLINFKTIIITLLYFSTSLLHLHAYEPIDRFNLNCGTTGNSTDGQRTWTGDINSKLLSSLQNNPTTVSVPKTTQNKVPYSSARLSHSIFNYSLPVSTGPKFLRLFFYPTTYTNGFNRYDASFTVISNGFTLLKDFNASLNADVEGVDTILKEYVINVGDDQRLDLSFIPSSGNSNNYGFINGIEILSMPDDLYYTPPDDPGFSLVGATIIPQYTIPTSVALETDYRIKVGVQDNSPNIQDIGMLRNWNINDTTYLKTPTARDFVQADITGTRNITVTPDYIAPKDLYRSSRDLGTNATLNRLLNLTWEFPVDSGFTYFIRLHFCELDPNITSAGDRVFTIYLQGNVAVEQADVLKWTLNQKGLAVQQNYAVLIPKGESNRNKKVNLKIQMHPFGNGDSRYTKFSDPFLNGLEIFKISEISSKNLAGPNPDPVQIPAQEKNNKKSRSGTTIIGVVLGVVFGVVLLCIVVFFVYRRKRQTEEKNTKTTKDSKSSTTSKWGPLSFATTTKSTNSNSSLPSDLCRSFSLLEIRAATNNFDELFIVGVGGFGHVYKGYIDNGSTQVAIKRLKPGSQQGENEFINEIDMLSKLRHLHLVSLIGYCNENNEMIIVYDFMARGTLRDHLYNTENPALSWKQRLQISIGAARGLHYLHTGAKNTIIHRDVKTTNILLDDKWIAKVSDFGLSRIGPTGISKAHVSTVVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLFEILCARPPLIRTAEKRQVSLADWGRYCYKNGMLGSIVDPSVKWSIAPECLRKFGEIAVSCLLDDGTLRPSMNDVVWMLEFALQLQESAEQREPQAVPHTLGRGNDDVEGERIDENDNDVFSSGSDVGIVSDFNKTSAVSVSTISTGSTSGDHSYGYNRESVFSEIIDPKAR*