Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939820 | XP_013451097.3 | 98.469 | 653 | 10 | 0 | 1 | 653 | 10 | 662 | 0.0 | 1337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939820 | sp|Q9LFU5|TRM1_ARATH | 70.906 | 574 | 147 | 1 | 59 | 632 | 1 | 554 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024930 | Msa0939820 | 0.824465 | 7.955006e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939820 | MtrunA17_Chr6g0455421 | 98.469 | 653 | 10 | 0 | 1 | 653 | 10 | 662 | 0.0 | 1337 |
| Msa0939820 | MtrunA17_Chr3g0128891 | 24.928 | 349 | 228 | 9 | 201 | 536 | 74 | 401 | 6.07e-22 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939820 | AT5G15810.1 | 70.906 | 574 | 147 | 1 | 59 | 632 | 1 | 554 | 0.0 | 859 |
| Msa0939820 | AT3G02320.1 | 70.383 | 574 | 150 | 3 | 59 | 632 | 1 | 554 | 0.0 | 839 |
| Msa0939820 | AT3G56330.1 | 25.490 | 357 | 220 | 9 | 201 | 537 | 91 | 421 | 2.12e-21 | 97.8 |
Find 150 sgRNAs with CRISPR-Local
Find 450 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTCTGCTTCTGGTTTA+AGG | 0.077465 | 6_3:+11975224 | Msa0939820:CDS |
| ACGCACCAATGAATGTTATT+TGG | 0.149545 | 6_3:+11978841 | Msa0939820:CDS |
| CGGATGGAGATGTGCATTTA+AGG | 0.153022 | 6_3:-11978737 | None:intergenic |
| CAAAACAATGGCTACAAATT+TGG | 0.171265 | 6_3:+11973918 | Msa0939820:CDS |
| AAAGATTTGAAAATGGAAAA+TGG | 0.172352 | 6_3:-11973817 | None:intergenic |
| CCATTTGACTTATGATCTTC+TGG | 0.209624 | 6_3:-11974875 | None:intergenic |
| TTATTATCTTCTTCAATCTT+TGG | 0.240378 | 6_3:-11980350 | None:intergenic |
| CTTGTCTGCTTCTGGTTTAA+GGG | 0.240651 | 6_3:+11975225 | Msa0939820:CDS |
| TTTGGACCCCAGTTTCTTTC+GGG | 0.244146 | 6_3:-11980212 | None:intergenic |
| CATGGTTAAGAGCTTCATTA+AGG | 0.250981 | 6_3:-11980292 | None:intergenic |
| GTGCGTCCTGCCCTTAGTTT+TGG | 0.254680 | 6_3:-11980230 | None:intergenic |
| CCCCAGTTTCTTTCGGGATT+TGG | 0.263689 | 6_3:-11980206 | None:intergenic |
| CTTCTTCATTATCTTGTTCA+TGG | 0.270231 | 6_3:-11980310 | None:intergenic |
| AGAACTCATGTTTGTGCAAT+AGG | 0.271497 | 6_3:+11978807 | Msa0939820:CDS |
| CTTTGCAAGTATGATACTTC+CGG | 0.288583 | 6_3:-11979364 | None:intergenic |
| TACCAAATCCCGAAAGAAAC+TGG | 0.295137 | 6_3:+11980204 | Msa0939820:CDS |
| TTGTGGGAGAAAATTCATTA+TGG | 0.315298 | 6_3:+11977945 | Msa0939820:CDS |
| TCTGCCGGCTGACCTTTAAT+AGG | 0.337653 | 6_3:-11979336 | None:intergenic |
| ATATAGGCCTTGTCTGCTTC+TGG | 0.341486 | 6_3:+11975217 | Msa0939820:intron |
| CGCACCAATGAATGTTATTT+GGG | 0.346689 | 6_3:+11978842 | Msa0939820:CDS |
| GCCTTCTGTGTTTCTTGATT+CGG | 0.356721 | 6_3:+11975968 | Msa0939820:CDS |
| CGGTTTCTTTCTTATGTTGT+TGG | 0.358792 | 6_3:+11973738 | Msa0939820:exon |
| AGTACACAAAGATTTGAAAA+TGG | 0.361182 | 6_3:-11973824 | None:intergenic |
| TTCTTTCCACCTTCAACCCC+TGG | 0.362068 | 6_3:+11977320 | Msa0939820:CDS |
| GAACTCATGTTTGTGCAATA+GGG | 0.371816 | 6_3:+11978808 | Msa0939820:CDS |
| TTTGCAAGTATGATACTTCC+GGG | 0.378110 | 6_3:-11979363 | None:intergenic |
| CTCGGTGGCTCCAGCTCTGC+CGG | 0.390513 | 6_3:-11975022 | None:intergenic |
| AGATATGCTTGTGAAATAGA+AGG | 0.394411 | 6_3:+11975253 | Msa0939820:CDS |
| GTTACACATACCTGCAAAAC+AGG | 0.395153 | 6_3:-11979390 | None:intergenic |
| CAGGTTGATCTTGATCCATA+TGG | 0.397666 | 6_3:+11975942 | Msa0939820:intron |
| AAGATTTGAAAATGGAAAAT+GGG | 0.401888 | 6_3:-11973816 | None:intergenic |
| AGAAGGAACATTAAATTCAA+TGG | 0.404077 | 6_3:+11975568 | Msa0939820:CDS |
| TGAAAATGATTCTTCTGAAA+TGG | 0.407060 | 6_3:+11974823 | Msa0939820:CDS |
| CTGTACTCTGCGGTTCAAAC+GGG | 0.418560 | 6_3:+11976045 | Msa0939820:CDS |
| CCAGAAGATCATAAGTCAAA+TGG | 0.427035 | 6_3:+11974875 | Msa0939820:CDS |
| ATGTCCCAAATAACATTCAT+TGG | 0.432144 | 6_3:-11978846 | None:intergenic |
| GATTGGTCAGGTTGTTGCTC+TGG | 0.436460 | 6_3:+11975276 | Msa0939820:CDS |
| CTCCTATCCATGATCAAGAA+TGG | 0.437696 | 6_3:+11977986 | Msa0939820:CDS |
| TGCATTTAAGGGTTGAAGAA+AGG | 0.440562 | 6_3:-11978725 | None:intergenic |
| GAACATTAAATTCAATGGTT+CGG | 0.442492 | 6_3:+11975573 | Msa0939820:CDS |
| GCTGTACTCTGCGGTTCAAA+CGG | 0.443628 | 6_3:+11976044 | Msa0939820:CDS |
| GTTGCTCTGGACAACGATCC+AGG | 0.448540 | 6_3:+11975289 | Msa0939820:CDS |
| CGATCCTCAAGGCCATTTCA+TGG | 0.448543 | 6_3:-11976208 | None:intergenic |
| TGAAGAGCAAGTTGATGATT+CGG | 0.448596 | 6_3:+11974988 | Msa0939820:CDS |
| TGGTCCTCCCCAGGGGTTGA+AGG | 0.450551 | 6_3:-11977329 | None:intergenic |
| TCATTATGGGTGGCCCCATA+TGG | 0.451391 | 6_3:+11977959 | Msa0939820:CDS |
| ATGGTTAAGAGCTTCATTAA+GGG | 0.453040 | 6_3:-11980291 | None:intergenic |
| CATGATACATACCTTGGAAA+TGG | 0.454449 | 6_3:-11977349 | None:intergenic |
| GAAACTGGGGTCCAAAACTA+AGG | 0.454924 | 6_3:+11980219 | Msa0939820:CDS |
| TTGGCGGAAGAGACATCTCC+TGG | 0.455006 | 6_3:+11974908 | Msa0939820:CDS |
| ATGGATAGGAGCAGACCATA+TGG | 0.460976 | 6_3:-11977974 | None:intergenic |
| ATACTTCCGGGTTGATCTGC+CGG | 0.461522 | 6_3:-11979351 | None:intergenic |
| TTTGGGACATAATGCGCTGC+TGG | 0.463927 | 6_3:+11978859 | Msa0939820:CDS |
| AGGTAAATATATCCATGAAA+TGG | 0.466756 | 6_3:+11976196 | Msa0939820:CDS |
| AAGCTACCCATTCTTGATCA+TGG | 0.467230 | 6_3:-11977993 | None:intergenic |
| TGTGGGAGAAAATTCATTAT+GGG | 0.467799 | 6_3:+11977946 | Msa0939820:CDS |
| CGATCTGCTGTGATTAATGC+TGG | 0.468286 | 6_3:+11978771 | Msa0939820:CDS |
| GTGTTCGTAAGCAGGATAGC+TGG | 0.469215 | 6_3:-11978046 | None:intergenic |
| AGCAAACACATCTCTCTGTT+AGG | 0.470179 | 6_3:+11980260 | Msa0939820:CDS |
| TCTTTCCACCTTCAACCCCT+GGG | 0.470873 | 6_3:+11977321 | Msa0939820:CDS |
| AACACAGAAGGCGAACCATA+TGG | 0.477324 | 6_3:-11975957 | None:intergenic |
| TCATATCTCTATCAGTGCAC+TGG | 0.477449 | 6_3:+11977291 | Msa0939820:CDS |
| GGATGGAGATGTGCATTTAA+GGG | 0.481062 | 6_3:-11978736 | None:intergenic |
| TATTTGTCGAAGAAAGCAAA+AGG | 0.481659 | 6_3:+11974785 | Msa0939820:CDS |
| CTCAAGAATGCACTGATTGT+GGG | 0.482646 | 6_3:+11977929 | Msa0939820:CDS |
| CCTTGGAAATGGTCCTCCCC+AGG | 0.490275 | 6_3:-11977338 | None:intergenic |
| TCCTATCCATGATCAAGAAT+GGG | 0.491160 | 6_3:+11977987 | Msa0939820:CDS |
| TGAAATAGAAGGGATTGGTC+AGG | 0.493183 | 6_3:+11975264 | Msa0939820:CDS |
| GCAGTTCAATCTGTTGCTGA+TGG | 0.495937 | 6_3:+11975990 | Msa0939820:CDS |
| CAGGATAGCTGGATTTCATA+CGG | 0.499416 | 6_3:-11978035 | None:intergenic |
| GCGGATATGTGTTCGTAAGC+AGG | 0.499982 | 6_3:-11978054 | None:intergenic |
| TCCACCTTCAACCCCTGGGG+AGG | 0.500066 | 6_3:+11977325 | Msa0939820:CDS |
| GGATATATTTACCTCTCGTC+GGG | 0.501359 | 6_3:-11976187 | None:intergenic |
| TGGATATATTTACCTCTCGT+CGG | 0.510387 | 6_3:-11976188 | None:intergenic |
| TGAGGGCATTTATATCGAAA+AGG | 0.511483 | 6_3:+11974744 | Msa0939820:CDS |
| ATGGGTTTGTTGCACGAACT+AGG | 0.513136 | 6_3:-11973798 | None:intergenic |
| ACCAAATCCCGAAAGAAACT+GGG | 0.514083 | 6_3:+11980205 | Msa0939820:CDS |
| ACAATTTAAGTAAATTGTTG+TGG | 0.517858 | 6_3:+11980530 | Msa0939820:three_prime_UTR |
| CCTCAAGAATGCACTGATTG+TGG | 0.525976 | 6_3:+11977928 | Msa0939820:CDS |
| TGGATAGGAGCAGACCATAT+GGG | 0.526610 | 6_3:-11977973 | None:intergenic |
| TTTGACTTATGATCTTCTGG+TGG | 0.528551 | 6_3:-11974872 | None:intergenic |
| AGCAAGATGAGACTCCACTT+TGG | 0.530297 | 6_3:-11975605 | None:intergenic |
| ATTGTAGTGCATGATTCTCC+AGG | 0.531662 | 6_3:-11974926 | None:intergenic |
| TAGAGATATGAAAGCTTCAA+AGG | 0.532018 | 6_3:-11977279 | None:intergenic |
| GGAACAGCAGGACCGTATCC+AGG | 0.534668 | 6_3:-11977907 | None:intergenic |
| GTGCATTCTTGAGGAACAGC+AGG | 0.541067 | 6_3:-11977919 | None:intergenic |
| TGATTCTTCTGAAATGGCTG+TGG | 0.543536 | 6_3:+11974829 | Msa0939820:CDS |
| GATGTGTACTGCAACAGATA+TGG | 0.547291 | 6_3:+11976022 | Msa0939820:CDS |
| TCATCCTATTAAAGGTCAGC+CGG | 0.547874 | 6_3:+11979332 | Msa0939820:CDS |
| GCTTGTGAAATAGAAGGGAT+TGG | 0.551513 | 6_3:+11975259 | Msa0939820:CDS |
| GATCGTTCTTGCTTCCATTG+AGG | 0.555396 | 6_3:+11976226 | Msa0939820:CDS |
| TTGGGACATAATGCGCTGCT+GGG | 0.557072 | 6_3:+11978860 | Msa0939820:CDS |
| TCTTCATATATATACCTCAA+TGG | 0.557375 | 6_3:-11976240 | None:intergenic |
| GTCAAATGGAAAATGTGAGT+TGG | 0.559452 | 6_3:+11974889 | Msa0939820:CDS |
| CTTGGAAATGGTCCTCCCCA+GGG | 0.563618 | 6_3:-11977337 | None:intergenic |
| GTCAGACATTTACCTGGATA+CGG | 0.563897 | 6_3:+11977895 | Msa0939820:CDS |
| GATATGCTTGTGAAATAGAA+GGG | 0.567946 | 6_3:+11975254 | Msa0939820:CDS |
| ATTTGTCGAAGAAAGCAAAA+GGG | 0.570115 | 6_3:+11974786 | Msa0939820:CDS |
| GGAGCCACCGAGGGTTCTTG+AGG | 0.571951 | 6_3:+11975033 | Msa0939820:CDS |
| TTCTTCTGAAATGGCTGTGG+AGG | 0.573472 | 6_3:+11974832 | Msa0939820:CDS |
| CCTTAAACCAGAAGCAGACA+AGG | 0.574066 | 6_3:-11975224 | None:intergenic |
| GCAAGATATAAGCAAAACAA+TGG | 0.574460 | 6_3:+11973906 | Msa0939820:CDS |
| AGCTGTAGCGTCTCTTAGCA+AGG | 0.575055 | 6_3:+11980154 | Msa0939820:CDS |
| CTTTCCACCTTCAACCCCTG+GGG | 0.578829 | 6_3:+11977322 | Msa0939820:CDS |
| TTCGGTTGCAGTTTCCAAAG+TGG | 0.581421 | 6_3:+11975591 | Msa0939820:CDS |
| AACAGAACCTCAAGAACCCT+CGG | 0.582672 | 6_3:-11975040 | None:intergenic |
| TGGAGAATCATGCACTACAA+TGG | 0.582816 | 6_3:+11974928 | Msa0939820:CDS |
| AAATGGAAAATGTGAGTTGG+CGG | 0.582911 | 6_3:+11974892 | Msa0939820:CDS |
| AAATGCCCTCAAAACAGCAA+TGG | 0.583692 | 6_3:-11974732 | None:intergenic |
| GAACAATATACCGCTTGTAT+CGG | 0.587438 | 6_3:-11977075 | None:intergenic |
| CGGAAGTATCATACTTGCAA+AGG | 0.589540 | 6_3:+11979365 | Msa0939820:CDS |
| GAATCATGCACTACAATGGA+AGG | 0.591686 | 6_3:+11974932 | Msa0939820:CDS |
| CATCTGTTGAAGCTTGCAGA+AGG | 0.593654 | 6_3:+11975551 | Msa0939820:CDS |
| GATCGGAAGATAACTGCGGA+TGG | 0.596291 | 6_3:-11978753 | None:intergenic |
| TCCTCCCCAGGGGTTGAAGG+TGG | 0.596742 | 6_3:-11977326 | None:intergenic |
| AGTTTCTTTCATAGCACTTG+CGG | 0.597536 | 6_3:-11977256 | None:intergenic |
| CTCATTTATGAGCTAAGATG+TGG | 0.600505 | 6_3:-11980375 | None:intergenic |
| TGGGGTCCAAAACTAAGGGC+AGG | 0.601669 | 6_3:+11980224 | Msa0939820:CDS |
| GGCAGAGCTGGAGCCACCGA+GGG | 0.604326 | 6_3:+11975024 | Msa0939820:CDS |
| GAAGAAAATTGAACAAACCC+AGG | 0.605857 | 6_3:+11973873 | Msa0939820:CDS |
| CCACAATCAGTGCATTCTTG+AGG | 0.606210 | 6_3:-11977928 | None:intergenic |
| ACTAGTGTCAGACATTTACC+TGG | 0.606939 | 6_3:+11977889 | Msa0939820:CDS |
| CAGCATTAATCACAGCAGAT+CGG | 0.607551 | 6_3:-11978770 | None:intergenic |
| GGTCAGCCGGCAGATCAACC+CGG | 0.614611 | 6_3:+11979345 | Msa0939820:CDS |
| GTTCAATCTGTTGCTGATGG+AGG | 0.615503 | 6_3:+11975993 | Msa0939820:CDS |
| GAGCAAGTTGATGATTCGGA+AGG | 0.620607 | 6_3:+11974992 | Msa0939820:CDS |
| ACCCATTCTTGATCATGGAT+AGG | 0.620964 | 6_3:-11977988 | None:intergenic |
| AAACTGGGGTCCAAAACTAA+GGG | 0.622563 | 6_3:+11980220 | Msa0939820:CDS |
| GGATAGGAGCAGACCATATG+GGG | 0.622962 | 6_3:-11977972 | None:intergenic |
| GGGAGAAAATTCATTATGGG+TGG | 0.623715 | 6_3:+11977949 | Msa0939820:CDS |
| TGTACTCTGCGGTTCAAACG+GGG | 0.628940 | 6_3:+11976046 | Msa0939820:CDS |
| GGAAGCAAGAACGATCCTCA+AGG | 0.630192 | 6_3:-11976219 | None:intergenic |
| TTTGTCGAAGAAAGCAAAAG+GGG | 0.631262 | 6_3:+11974787 | Msa0939820:CDS |
| TGATATTGTATTCAATATAG+CGG | 0.632848 | 6_3:-11978073 | None:intergenic |
| TATATTGAATACAATATCAG+AGG | 0.636851 | 6_3:+11978077 | Msa0939820:CDS |
| ATATCCATGAAATGGCCTTG+AGG | 0.641144 | 6_3:+11976204 | Msa0939820:CDS |
| CCTGGGGAGGACCATTTCCA+AGG | 0.641731 | 6_3:+11977338 | Msa0939820:CDS |
| TTGGAAATGGTCCTCCCCAG+GGG | 0.644142 | 6_3:-11977336 | None:intergenic |
| GCAAAGATCGATGAAGAATG+TGG | 0.647924 | 6_3:+11974959 | Msa0939820:CDS |
| GCCGAATCAAGAAACACAGA+AGG | 0.651846 | 6_3:-11975969 | None:intergenic |
| CGGCAGAGCTGGAGCCACCG+AGG | 0.657470 | 6_3:+11975023 | Msa0939820:CDS |
| CACAAGCGAAGAAAGTTGCG+AGG | 0.660654 | 6_3:+11980177 | Msa0939820:CDS |
| TATGGATCATACCCGACGAG+AGG | 0.674650 | 6_3:+11976176 | Msa0939820:CDS |
| CCAAATCCCGAAAGAAACTG+GGG | 0.699685 | 6_3:+11980206 | Msa0939820:CDS |
| ACAGATATGGCTGTACTCTG+CGG | 0.702900 | 6_3:+11976035 | Msa0939820:CDS |
| ACTCTGCGGTTCAAACGGGG+AGG | 0.716122 | 6_3:+11976049 | Msa0939820:CDS |
| AAATTGTTTATTGAGCAACA+AGG | 0.739133 | 6_3:-11980514 | None:intergenic |
| AGCAGATCGGAAGATAACTG+CGG | 0.741464 | 6_3:-11978757 | None:intergenic |
| GTCATGCTAACCGATACAAG+CGG | 0.742013 | 6_3:+11977065 | Msa0939820:CDS |
| AGAACCTCAAGAACCCTCGG+TGG | 0.754742 | 6_3:-11975037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCAAAAATTTCAATTA+GGG | - | chr6_3:11974106-11974125 | None:intergenic | 10.0% |
| !! | AAAAATCAAAAATTTCAATT+AGG | - | chr6_3:11974107-11974126 | None:intergenic | 10.0% |
| !! | AAAGAATTAAAATTCAATTA+GGG | - | chr6_3:11974252-11974271 | None:intergenic | 10.0% |
| !! | AAAAGAATTAAAATTCAATT+AGG | - | chr6_3:11974253-11974272 | None:intergenic | 10.0% |
| !! | AAATAAAAACTAAATGATTT+AGG | - | chr6_3:11976526-11976545 | None:intergenic | 10.0% |
| !!! | ATTGTTCTAAAAAAAAAAAA+AGG | - | chr6_3:11978122-11978141 | None:intergenic | 10.0% |
| !! | TTAAAAGAATAAAATGATAT+TGG | + | chr6_3:11979588-11979607 | Msa0939820:intron | 10.0% |
| !! | TAAAAGAATAAAATGATATT+GGG | + | chr6_3:11979589-11979608 | Msa0939820:intron | 10.0% |
| !! | ATATTTAGCATAAATATAAT+AGG | + | chr6_3:11979991-11980010 | Msa0939820:intron | 10.0% |
| !!! | TTTTTAATTCAATTTTGATT+TGG | + | chr6_3:11980645-11980664 | Msa0939820:three_prime_UTR | 10.0% |
| !! | AAATGTTAAAAATTCTAAGT+AGG | + | chr6_3:11973673-11973692 | Msa0939820:five_prime_UTR | 15.0% |
| !! | AATGTTAAAAATTCTAAGTA+GGG | + | chr6_3:11973674-11973693 | Msa0939820:five_prime_UTR | 15.0% |
| !! | AAATCCAATTATAACAAAAA+GGG | - | chr6_3:11974053-11974072 | None:intergenic | 15.0% |
| !! | AACATAAATGAGTTATATAA+AGG | - | chr6_3:11975081-11975100 | None:intergenic | 15.0% |
| !! | AATAAAAATTTGTAATAACC+AGG | - | chr6_3:11975373-11975392 | None:intergenic | 15.0% |
| !!! | TCTGAAAATTGTTTTTTTTT+TGG | + | chr6_3:11976406-11976425 | Msa0939820:intron | 15.0% |
| !!! | CTGAAAATTGTTTTTTTTTT+GGG | + | chr6_3:11976407-11976426 | Msa0939820:intron | 15.0% |
| !!! | GTTACAGTATTTTAAAATTA+TGG | + | chr6_3:11976620-11976639 | Msa0939820:intron | 15.0% |
| !!! | TTATTTTGTTATATGTTCTT+TGG | + | chr6_3:11976645-11976664 | Msa0939820:intron | 15.0% |
| !!! | AATATCTACTTTTACTTATA+TGG | - | chr6_3:11976852-11976871 | None:intergenic | 15.0% |
| !! | AAGAAGTTAAAATGAAAATA+AGG | - | chr6_3:11977852-11977871 | None:intergenic | 15.0% |
| !! | ACAATGTACATAATATTATA+TGG | + | chr6_3:11978137-11978156 | Msa0939820:intron | 15.0% |
| !! | AAAAGAATAAAATGATATTG+GGG | + | chr6_3:11979590-11979609 | Msa0939820:intron | 15.0% |
| !! | AGCTTAATAAAAATAGATTA+TGG | + | chr6_3:11979641-11979660 | Msa0939820:intron | 15.0% |
| !! | ATTGAGATATTATGAAAATA+AGG | - | chr6_3:11979918-11979937 | None:intergenic | 15.0% |
| !! | AAGATTTGAAAATGGAAAAT+GGG | - | chr6_3:11973819-11973838 | None:intergenic | 20.0% |
| !! | AAAGATTTGAAAATGGAAAA+TGG | - | chr6_3:11973820-11973839 | None:intergenic | 20.0% |
| !!! | TTATCCCTTTTTGTTATAAT+TGG | + | chr6_3:11974046-11974065 | Msa0939820:intron | 20.0% |
| !! | CAAATCCAATTATAACAAAA+AGG | - | chr6_3:11974054-11974073 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGTGTTTGATGTT+TGG | + | chr6_3:11974121-11974140 | Msa0939820:intron | 20.0% |
| !! | AAAATTGAAACTTGAGTAAT+GGG | + | chr6_3:11974175-11974194 | Msa0939820:intron | 20.0% |
| !!! | TTAATCCAATGTTTGATTTA+TGG | + | chr6_3:11974272-11974291 | Msa0939820:intron | 20.0% |
| !! | ACAAAATTGAAACTTGAATA+TGG | + | chr6_3:11974317-11974336 | Msa0939820:intron | 20.0% |
| !! | CAAAATTGAAACTTGAATAT+GGG | + | chr6_3:11974318-11974337 | Msa0939820:intron | 20.0% |
| !!! | TTTGTATTGAAAAGTGATTT+TGG | - | chr6_3:11974546-11974565 | None:intergenic | 20.0% |
| !! | TAAACAGTTATAATAAACAG+AGG | - | chr6_3:11974603-11974622 | None:intergenic | 20.0% |
| !!! | CTGTTTATTATAACTGTTTT+TGG | + | chr6_3:11974616-11974635 | Msa0939820:intron | 20.0% |
| !!! | TTATTTTCAGGTTAATAACA+GGG | + | chr6_3:11974703-11974722 | Msa0939820:intron | 20.0% |
| !! | TTATATAAAGGACATCTAAA+GGG | - | chr6_3:11975069-11975088 | None:intergenic | 20.0% |
| !!! | AATCTTTGAATTTTATTCCA+TGG | + | chr6_3:11975338-11975357 | Msa0939820:intron | 20.0% |
| !!! | AATTTTATTCCATGGTTATA+AGG | + | chr6_3:11975346-11975365 | Msa0939820:intron | 20.0% |
| !!! | ATTTTATTCCATGGTTATAA+GGG | + | chr6_3:11975347-11975366 | Msa0939820:intron | 20.0% |
| !! | TAATCAATGCTGTTAAATAA+AGG | + | chr6_3:11975716-11975735 | Msa0939820:intron | 20.0% |
| !!! | TAACTAAAAGTCATTTTTAG+TGG | + | chr6_3:11976342-11976361 | Msa0939820:intron | 20.0% |
| !!! | TTTTTTTTGGGATAAAAATG+AGG | + | chr6_3:11976419-11976438 | Msa0939820:intron | 20.0% |
| !!! | TTTAGGTATTCTTTTTTATG+CGG | - | chr6_3:11976509-11976528 | None:intergenic | 20.0% |
| !! | TTTCTATTAATTGAAACCAA+GGG | - | chr6_3:11976564-11976583 | None:intergenic | 20.0% |
| !! | ATTTCTATTAATTGAAACCA+AGG | - | chr6_3:11976565-11976584 | None:intergenic | 20.0% |
| !! | AAATCTTGATTTCTTATGTA+GGG | - | chr6_3:11976932-11976951 | None:intergenic | 20.0% |
| !! | TAAATCTTGATTTCTTATGT+AGG | - | chr6_3:11976933-11976952 | None:intergenic | 20.0% |
| !! | TGATATTGTATTCAATATAG+CGG | - | chr6_3:11978076-11978095 | None:intergenic | 20.0% |
| !! | TATATTGAATACAATATCAG+AGG | + | chr6_3:11978077-11978096 | Msa0939820:CDS | 20.0% |
| !! | AGAGTTAGACAAAAAAAAAA+GGG | - | chr6_3:11978566-11978585 | None:intergenic | 20.0% |
| !! | TAGAGTTAGACAAAAAAAAA+AGG | - | chr6_3:11978567-11978586 | None:intergenic | 20.0% |
| !! | TAAATGTGTTACAACATATT+GGG | + | chr6_3:11978618-11978637 | Msa0939820:intron | 20.0% |
| !!! | TGATTGTATTTTATTTTTGC+AGG | + | chr6_3:11978665-11978684 | Msa0939820:intron | 20.0% |
| !!! | GATTTTTTACCTAAATGAAA+GGG | - | chr6_3:11979314-11979333 | None:intergenic | 20.0% |
| !!! | TGATTTTTTACCTAAATGAA+AGG | - | chr6_3:11979315-11979334 | None:intergenic | 20.0% |
| !! | GTAAAAAATCATCCTATTAA+AGG | + | chr6_3:11979324-11979343 | Msa0939820:CDS | 20.0% |
| !! | TTTATTCTTATGCAAAATGT+AGG | + | chr6_3:11979422-11979441 | Msa0939820:intron | 20.0% |
| !! | TTATTCTTATGCAAAATGTA+GGG | + | chr6_3:11979423-11979442 | Msa0939820:intron | 20.0% |
| !!! | TTTGCGGTTTTAAATTTTTT+TGG | + | chr6_3:11979491-11979510 | Msa0939820:intron | 20.0% |
| !!! | GGTTTTAAATTTTTTTGGTT+GGG | + | chr6_3:11979496-11979515 | Msa0939820:intron | 20.0% |
| !! | AAAGAATAAAATGATATTGG+GGG | + | chr6_3:11979591-11979610 | Msa0939820:intron | 20.0% |
| !! | TAACTTCATATAAACTATCT+TGG | - | chr6_3:11979719-11979738 | None:intergenic | 20.0% |
| !! | TTATTATCTTCTTCAATCTT+TGG | - | chr6_3:11980353-11980372 | None:intergenic | 20.0% |
| !!! | TCATGAATTTCTACATTTTT+TGG | + | chr6_3:11980416-11980435 | Msa0939820:three_prime_UTR | 20.0% |
| !! | ACAATTTAAGTAAATTGTTG+TGG | + | chr6_3:11980530-11980549 | Msa0939820:three_prime_UTR | 20.0% |
| ! | ACCCATGTACTATATAAAAA+CGG | + | chr6_3:11973718-11973737 | Msa0939820:five_prime_UTR | 25.0% |
| !!! | ACCGTTTTTATATAGTACAT+GGG | - | chr6_3:11973722-11973741 | None:intergenic | 25.0% |
| !!! | AACCGTTTTTATATAGTACA+TGG | - | chr6_3:11973723-11973742 | None:intergenic | 25.0% |
| ! | AGTACACAAAGATTTGAAAA+TGG | - | chr6_3:11973827-11973846 | None:intergenic | 25.0% |
| !! | GGATGATTTTACAGTTATTA+AGG | + | chr6_3:11973939-11973958 | Msa0939820:CDS | 25.0% |
| !! | GATTTTACAGTTATTAAGGA+AGG | + | chr6_3:11973943-11973962 | Msa0939820:CDS | 25.0% |
| !! | TGGATTTGAAATTTGAAATC+AGG | + | chr6_3:11974066-11974085 | Msa0939820:intron | 25.0% |
| !! | GGATTTGAAATTTGAAATCA+GGG | + | chr6_3:11974067-11974086 | Msa0939820:intron | 25.0% |
| ! | TTTATGGTGAAAGAAATGAT+GGG | + | chr6_3:11974144-11974163 | Msa0939820:intron | 25.0% |
| ! | CAAAATTGAAACTTGAGTAA+TGG | + | chr6_3:11974174-11974193 | Msa0939820:intron | 25.0% |
| ! | AAATTGAAACTTGAGTAATG+GGG | + | chr6_3:11974176-11974195 | Msa0939820:intron | 25.0% |
| ! | ATTTATGGTGAAGAAAATGA+TGG | + | chr6_3:11974287-11974306 | Msa0939820:intron | 25.0% |
| ! | TTTATGGTGAAGAAAATGAT+GGG | + | chr6_3:11974288-11974307 | Msa0939820:intron | 25.0% |
| ! | TGAAATGATTGTGGATTTAT+TGG | + | chr6_3:11974365-11974384 | Msa0939820:intron | 25.0% |
| !! | TGGTGATTTTGAATGTTAAT+TGG | + | chr6_3:11974385-11974404 | Msa0939820:intron | 25.0% |
| !!! | TGGATTATTAAGTAGTTTTG+TGG | + | chr6_3:11974405-11974424 | Msa0939820:intron | 25.0% |
| !!! | TATTAAGTAGTTTTGTGGTT+AGG | + | chr6_3:11974410-11974429 | Msa0939820:intron | 25.0% |
| !! | TTTTGGCAAAAACTATACTT+TGG | - | chr6_3:11974529-11974548 | None:intergenic | 25.0% |
| ! | AACAAAACCAGAATGAATAT+AGG | - | chr6_3:11974685-11974704 | None:intergenic | 25.0% |
| !!! | ATTCTGGTTTTGTTATTTTC+AGG | + | chr6_3:11974691-11974710 | Msa0939820:intron | 25.0% |
| !!! | GTTATTTTCAGGTTAATAAC+AGG | + | chr6_3:11974702-11974721 | Msa0939820:intron | 25.0% |
| !! | TGAAAATGATTCTTCTGAAA+TGG | + | chr6_3:11974823-11974842 | Msa0939820:CDS | 25.0% |
| ! | TATATAAAGGACATCTAAAG+GGG | - | chr6_3:11975068-11975087 | None:intergenic | 25.0% |
| ! | GTTATATAAAGGACATCTAA+AGG | - | chr6_3:11975070-11975089 | None:intergenic | 25.0% |
| ! | TATCGAATTAACAATAGTGA+TGG | - | chr6_3:11975116-11975135 | None:intergenic | 25.0% |
| ! | GAGAACAAATAAGTTAAATC+AGG | - | chr6_3:11975139-11975158 | None:intergenic | 25.0% |
| !!! | ATTTTTTATAAACCAACGTC+TGG | + | chr6_3:11975403-11975422 | Msa0939820:intron | 25.0% |
| ! | AGAAGGAACATTAAATTCAA+TGG | + | chr6_3:11975568-11975587 | Msa0939820:CDS | 25.0% |
| ! | GAACATTAAATTCAATGGTT+CGG | + | chr6_3:11975573-11975592 | Msa0939820:CDS | 25.0% |
| !! | TTACCACATCAAACTTTTTA+GGG | - | chr6_3:11975657-11975676 | None:intergenic | 25.0% |
| !! | TAATGAAAATACCCTTTTGA+CGG | + | chr6_3:11975898-11975917 | Msa0939820:intron | 25.0% |
| !!! | ACTGATTTTTACATCAGATA+TGG | + | chr6_3:11976158-11976177 | Msa0939820:intron | 25.0% |
| ! | AGGTAAATATATCCATGAAA+TGG | + | chr6_3:11976196-11976215 | Msa0939820:CDS | 25.0% |
| ! | TCTTCATATATATACCTCAA+TGG | - | chr6_3:11976243-11976262 | None:intergenic | 25.0% |
| ! | ACATGAATTTCAATGTACTT+AGG | - | chr6_3:11977406-11977425 | None:intergenic | 25.0% |
| ! | TGTAAAAACAATAACCCAAT+TGG | + | chr6_3:11977437-11977456 | Msa0939820:intron | 25.0% |
| ! | TAGAACAACATACTTACAAT+AGG | - | chr6_3:11977514-11977533 | None:intergenic | 25.0% |
| !!! | CATATTTTTAAAAATCGAGC+CGG | + | chr6_3:11978180-11978199 | Msa0939820:intron | 25.0% |
| ! | TACTTGACAAATTACTCAAA+CGG | + | chr6_3:11978240-11978259 | Msa0939820:intron | 25.0% |
| !!! | TGGTTTGGTTTTTTAAACAT+TGG | + | chr6_3:11978284-11978303 | Msa0939820:intron | 25.0% |
| ! | AACACATTTAGAAATGTGAT+AGG | - | chr6_3:11978608-11978627 | None:intergenic | 25.0% |
| ! | CTAAATGTGTTACAACATAT+TGG | + | chr6_3:11978617-11978636 | Msa0939820:intron | 25.0% |
| !! | GACAACATTGGTTATTATAA+GGG | - | chr6_3:11979024-11979043 | None:intergenic | 25.0% |
| !! | TGACAACATTGGTTATTATA+AGG | - | chr6_3:11979025-11979044 | None:intergenic | 25.0% |
| ! | TTATCAATGTTGCCAAATAA+CGG | - | chr6_3:11979187-11979206 | None:intergenic | 25.0% |
| !!! | CGGTTTTAAATTTTTTTGGT+TGG | + | chr6_3:11979495-11979514 | Msa0939820:intron | 25.0% |
| !!! | CTTGATTTTTTATACTCGTA+GGG | - | chr6_3:11979768-11979787 | None:intergenic | 25.0% |
| !!! | TCTTGATTTTTTATACTCGT+AGG | - | chr6_3:11979769-11979788 | None:intergenic | 25.0% |
| !! | AGATTAGTGCATATTGATTA+AGG | + | chr6_3:11979809-11979828 | Msa0939820:intron | 25.0% |
| ! | AATAAGGTGAAAACAACTTA+TGG | - | chr6_3:11979902-11979921 | None:intergenic | 25.0% |
| ! | AAATTGTTTATTGAGCAACA+AGG | - | chr6_3:11980517-11980536 | None:intergenic | 25.0% |
| ! | AAATTGTTGTGGCAAAAATA+AGG | + | chr6_3:11980541-11980560 | Msa0939820:three_prime_UTR | 25.0% |
| ATCTTGCAAAAACAAATCCT+GGG | - | chr6_3:11973893-11973912 | None:intergenic | 30.0% | |
| TATCTTGCAAAAACAAATCC+TGG | - | chr6_3:11973894-11973913 | None:intergenic | 30.0% | |
| GCAAGATATAAGCAAAACAA+TGG | + | chr6_3:11973906-11973925 | Msa0939820:CDS | 30.0% | |
| CAAAACAATGGCTACAAATT+TGG | + | chr6_3:11973918-11973937 | Msa0939820:CDS | 30.0% | |
| !!! | AGTCTTTTTCAATAAAGCTC+AGG | + | chr6_3:11973999-11974018 | Msa0939820:CDS | 30.0% |
| ! | TGTGTTTGATGTTTGGTTTA+TGG | + | chr6_3:11974128-11974147 | Msa0939820:intron | 30.0% |
| GTTTATGGTGAAAGAAATGA+TGG | + | chr6_3:11974143-11974162 | Msa0939820:intron | 30.0% | |
| CTTCACCATAAATCAAACAT+TGG | - | chr6_3:11974280-11974299 | None:intergenic | 30.0% | |
| ! | GAACTTTTGTGAAATGATTG+TGG | + | chr6_3:11974356-11974375 | Msa0939820:intron | 30.0% |
| CATTACAAACATATCCTAAG+TGG | - | chr6_3:11974458-11974477 | None:intergenic | 30.0% | |
| ACTTTGAATTTGACCAAATC+AGG | + | chr6_3:11974478-11974497 | Msa0939820:intron | 30.0% | |
| CTTTGAATTTGACCAAATCA+GGG | + | chr6_3:11974479-11974498 | Msa0939820:intron | 30.0% | |
| GATTGAACCTATATTCATTC+TGG | + | chr6_3:11974675-11974694 | Msa0939820:intron | 30.0% | |
| TATTTGTCGAAGAAAGCAAA+AGG | + | chr6_3:11974785-11974804 | Msa0939820:CDS | 30.0% | |
| ATTTGTCGAAGAAAGCAAAA+GGG | + | chr6_3:11974786-11974805 | Msa0939820:CDS | 30.0% | |
| ! | TCTTTTATTGCTCTGCATAT+AGG | + | chr6_3:11975201-11975220 | Msa0939820:intron | 30.0% |
| AGATATGCTTGTGAAATAGA+AGG | + | chr6_3:11975253-11975272 | Msa0939820:CDS | 30.0% | |
| GATATGCTTGTGAAATAGAA+GGG | + | chr6_3:11975254-11975273 | Msa0939820:CDS | 30.0% | |
| GATTATGTAAACTCATGAAC+CGG | - | chr6_3:11975322-11975341 | None:intergenic | 30.0% | |
| !! | TAGTGGTTGGTTTACTATTT+GGG | + | chr6_3:11975430-11975449 | Msa0939820:intron | 30.0% |
| AAACCCTAAAAAGTTTGATG+TGG | + | chr6_3:11975651-11975670 | Msa0939820:CDS | 30.0% | |
| ! | CTTACCACATCAAACTTTTT+AGG | - | chr6_3:11975658-11975677 | None:intergenic | 30.0% |
| ! | TTCACATTTTTCTGTTTTCC+AGG | + | chr6_3:11975923-11975942 | Msa0939820:intron | 30.0% |
| GAAATCAGCAATAGCTTAAT+TGG | + | chr6_3:11976273-11976292 | Msa0939820:intron | 30.0% | |
| CTCAAATAGTGTGTAACAAA+CGG | - | chr6_3:11976302-11976321 | None:intergenic | 30.0% | |
| TTAAACTAATAACAGACCCT+TGG | + | chr6_3:11976545-11976564 | Msa0939820:intron | 30.0% | |
| !! | GATAATTGACTTGACTTTCA+TGG | - | chr6_3:11976675-11976694 | None:intergenic | 30.0% |
| ! | TTTCTTATGTAGGGAGTATA+AGG | - | chr6_3:11976923-11976942 | None:intergenic | 30.0% |
| AAATTAAGCAGTAACTCTCT+TGG | - | chr6_3:11976964-11976983 | None:intergenic | 30.0% | |
| TAGAGATATGAAAGCTTCAA+AGG | - | chr6_3:11977282-11977301 | None:intergenic | 30.0% | |
| ATCATGTTCTTGTCTGTTAT+TGG | + | chr6_3:11977366-11977385 | Msa0939820:intron | 30.0% | |
| !! | GGTTATTTTGTCTTCCAATT+GGG | - | chr6_3:11977454-11977473 | None:intergenic | 30.0% |
| !! | AGGTTATTTTGTCTTCCAAT+TGG | - | chr6_3:11977455-11977474 | None:intergenic | 30.0% |
| CTTGAAGAGTTTAGAGAAAT+AGG | - | chr6_3:11977637-11977656 | None:intergenic | 30.0% | |
| ACTATCATTGATGTCTTAAG+TGG | + | chr6_3:11977823-11977842 | Msa0939820:intron | 30.0% | |
| TTGTGGGAGAAAATTCATTA+TGG | + | chr6_3:11977945-11977964 | Msa0939820:CDS | 30.0% | |
| TGTGGGAGAAAATTCATTAT+GGG | + | chr6_3:11977946-11977965 | Msa0939820:CDS | 30.0% | |
| !! | CGGCTCGATTTTTAAAAATA+TGG | - | chr6_3:11978182-11978201 | None:intergenic | 30.0% |
| ACTTGACAAATTACTCAAAC+GGG | + | chr6_3:11978241-11978260 | Msa0939820:intron | 30.0% | |
| TTTATCACTTGAGAGAGAAT+TGG | - | chr6_3:11978320-11978339 | None:intergenic | 30.0% | |
| CTTAAAAATAGAGGAACATC+TGG | - | chr6_3:11978696-11978715 | None:intergenic | 30.0% | |
| TTGTGCAGACTTAAAAATAG+AGG | - | chr6_3:11978705-11978724 | None:intergenic | 30.0% | |
| ATGTCCCAAATAACATTCAT+TGG | - | chr6_3:11978849-11978868 | None:intergenic | 30.0% | |
| TGTTTGTCTTGGTTAACTAT+CGG | + | chr6_3:11978924-11978943 | Msa0939820:intron | 30.0% | |
| ! | TCCTGTAGAATTAGATTTTC+TGG | + | chr6_3:11978948-11978967 | Msa0939820:intron | 30.0% |
| ACCAGAAAATCTAATTCTAC+AGG | - | chr6_3:11978952-11978971 | None:intergenic | 30.0% | |
| ACATGTTCTCATGTGATTAT+AGG | + | chr6_3:11979231-11979250 | Msa0939820:intron | 30.0% | |
| CATGTTCTCATGTGATTATA+GGG | + | chr6_3:11979232-11979251 | Msa0939820:intron | 30.0% | |
| ! | ATGTGATTATAGGGTATTCT+TGG | + | chr6_3:11979241-11979260 | Msa0939820:intron | 30.0% |
| GCATAAGAATAAAACCTGAA+TGG | - | chr6_3:11979415-11979434 | None:intergenic | 30.0% | |
| AAAGTGAACTTGAAAGTTTG+CGG | + | chr6_3:11979475-11979494 | Msa0939820:intron | 30.0% | |
| ! | AGATTATGGTGTCTTTAAGA+TGG | + | chr6_3:11979655-11979674 | Msa0939820:intron | 30.0% |
| TCAAAGAAACCAATTCAAAG+AGG | - | chr6_3:11979836-11979855 | None:intergenic | 30.0% | |
| GTTTCTTTGAGCTTATCTAT+TGG | + | chr6_3:11979846-11979865 | Msa0939820:intron | 30.0% | |
| TTATCTATTGGCATAAGCAA+TGG | + | chr6_3:11979858-11979877 | Msa0939820:intron | 30.0% | |
| !!! | CTTGGTCTTATTTTGACATT+TGG | + | chr6_3:11980063-11980082 | Msa0939820:intron | 30.0% |
| !!! | TTATTTTGACATTTGGCACT+GGG | + | chr6_3:11980070-11980089 | Msa0939820:intron | 30.0% |
| ATGGTTAAGAGCTTCATTAA+GGG | - | chr6_3:11980294-11980313 | None:intergenic | 30.0% | |
| CTTCTTCATTATCTTGTTCA+TGG | - | chr6_3:11980313-11980332 | None:intergenic | 30.0% | |
| !! | ATCTTTGGCTTCTTACTTTT+AGG | - | chr6_3:11980338-11980357 | None:intergenic | 30.0% |
| CGGTTTCTTTCTTATGTTGT+TGG | + | chr6_3:11973738-11973757 | Msa0939820:exon | 35.0% | |
| !!! | TCAGTTGCAGTTTTAGAGTA+CGG | - | chr6_3:11973777-11973796 | None:intergenic | 35.0% |
| GAAGAAAATTGAACAAACCC+AGG | + | chr6_3:11973873-11973892 | Msa0939820:CDS | 35.0% | |
| !!! | GTGAAAGAAATGATGGGTTT+TGG | + | chr6_3:11974150-11974169 | Msa0939820:intron | 35.0% |
| !!! | TGGTGCTGATTTTGGAAATT+TGG | + | chr6_3:11974199-11974218 | Msa0939820:intron | 35.0% |
| !! | CTGATTTTGGAAATTTGGCT+TGG | + | chr6_3:11974204-11974223 | Msa0939820:intron | 35.0% |
| !!! | ATATGGGATGATGCTGATTT+TGG | + | chr6_3:11974334-11974353 | Msa0939820:intron | 35.0% |
| GATACAATCACTTTCCACTT+AGG | + | chr6_3:11974441-11974460 | Msa0939820:intron | 35.0% | |
| !!! | ATTTGTCCATTGCTGTTTTG+AGG | + | chr6_3:11974726-11974745 | Msa0939820:CDS | 35.0% |
| !!! | TTTGTCCATTGCTGTTTTGA+GGG | + | chr6_3:11974727-11974746 | Msa0939820:CDS | 35.0% |
| !! | TGAGGGCATTTATATCGAAA+AGG | + | chr6_3:11974744-11974763 | Msa0939820:CDS | 35.0% |
| TTTGTCGAAGAAAGCAAAAG+GGG | + | chr6_3:11974787-11974806 | Msa0939820:CDS | 35.0% | |
| ! | TTTGACTTATGATCTTCTGG+TGG | - | chr6_3:11974875-11974894 | None:intergenic | 35.0% |
| ! | CCATTTGACTTATGATCTTC+TGG | - | chr6_3:11974878-11974897 | None:intergenic | 35.0% |
| CCAGAAGATCATAAGTCAAA+TGG | + | chr6_3:11974875-11974894 | Msa0939820:CDS | 35.0% | |
| GTCAAATGGAAAATGTGAGT+TGG | + | chr6_3:11974889-11974908 | Msa0939820:CDS | 35.0% | |
| ! | AAATGGAAAATGTGAGTTGG+CGG | + | chr6_3:11974892-11974911 | Msa0939820:CDS | 35.0% |
| !! | TGAAGAGCAAGTTGATGATT+CGG | + | chr6_3:11974988-11975007 | Msa0939820:CDS | 35.0% |
| AATAGTAAACCAACCACTAC+AGG | - | chr6_3:11975429-11975448 | None:intergenic | 35.0% | |
| !! | GTAGTGGTTGGTTTACTATT+TGG | + | chr6_3:11975429-11975448 | Msa0939820:intron | 35.0% |
| AAATGTGAACACCGTCAAAA+GGG | - | chr6_3:11975912-11975931 | None:intergenic | 35.0% | |
| AAAATGTGAACACCGTCAAA+AGG | - | chr6_3:11975913-11975932 | None:intergenic | 35.0% | |
| AAAATCAGTCGTTAGAAGAC+AGG | - | chr6_3:11976147-11976166 | None:intergenic | 35.0% | |
| TGGATATATTTACCTCTCGT+CGG | - | chr6_3:11976191-11976210 | None:intergenic | 35.0% | |
| AATAGAAATTGAGATGCAGC+TGG | + | chr6_3:11976576-11976595 | Msa0939820:intron | 35.0% | |
| ATAGAAATTGAGATGCAGCT+GGG | + | chr6_3:11976577-11976596 | Msa0939820:intron | 35.0% | |
| ACATTTGTGATGTGTAGTGT+AGG | - | chr6_3:11976744-11976763 | None:intergenic | 35.0% | |
| AATCCACCAACCAAAACAAA+TGG | + | chr6_3:11976896-11976915 | Msa0939820:intron | 35.0% | |
| ATCCACCAACCAAAACAAAT+GGG | + | chr6_3:11976897-11976916 | Msa0939820:intron | 35.0% | |
| ! | AGTATAAGGCCCATTTGTTT+TGG | - | chr6_3:11976909-11976928 | None:intergenic | 35.0% |
| GAACAATATACCGCTTGTAT+CGG | - | chr6_3:11977078-11977097 | None:intergenic | 35.0% | |
| ! | TCCTGTGCTATCTTTTCAAA+AGG | + | chr6_3:11977096-11977115 | Msa0939820:CDS | 35.0% |
| !! | TCCTTTTGAAAAGATAGCAC+AGG | - | chr6_3:11977100-11977119 | None:intergenic | 35.0% |
| AGTTTCTTTCATAGCACTTG+CGG | - | chr6_3:11977259-11977278 | None:intergenic | 35.0% | |
| CATGATACATACCTTGGAAA+TGG | - | chr6_3:11977352-11977371 | None:intergenic | 35.0% | |
| CAAGAACATGATACATACCT+TGG | - | chr6_3:11977358-11977377 | None:intergenic | 35.0% | |
| !! | ATGTACTTAGGTGTCGAATA+CGG | - | chr6_3:11977394-11977413 | None:intergenic | 35.0% |
| AGAATACAGTGGATCAGAAT+AGG | - | chr6_3:11977475-11977494 | None:intergenic | 35.0% | |
| AAGGAGAATGTAGAATACAG+TGG | - | chr6_3:11977486-11977505 | None:intergenic | 35.0% | |
| ATACTTACAATAGGCACACA+AGG | - | chr6_3:11977505-11977524 | None:intergenic | 35.0% | |
| ACTAAGTCGTTTGTTCAAAC+AGG | + | chr6_3:11977759-11977778 | Msa0939820:intron | 35.0% | |
| CTAAGTCGTTTGTTCAAACA+GGG | + | chr6_3:11977760-11977779 | Msa0939820:intron | 35.0% | |
| AGCGACATTTGAACATAGTA+TGG | - | chr6_3:11977786-11977805 | None:intergenic | 35.0% | |
| TCCTATCCATGATCAAGAAT+GGG | + | chr6_3:11977987-11978006 | Msa0939820:CDS | 35.0% | |
| CTTGACAAATTACTCAAACG+GGG | + | chr6_3:11978242-11978261 | Msa0939820:intron | 35.0% | |
| TGAGAGAGAATTGGTATGTT+TGG | - | chr6_3:11978311-11978330 | None:intergenic | 35.0% | |
| AATGTCTCACATTATTGAGG+TGG | - | chr6_3:11978355-11978374 | None:intergenic | 35.0% | |
| CACAATGTCTCACATTATTG+AGG | - | chr6_3:11978358-11978377 | None:intergenic | 35.0% | |
| GGCTGGAATAATAGAAGATA+CGG | - | chr6_3:11978381-11978400 | None:intergenic | 35.0% | |
| ATCTTCTATTATTCCAGCCT+TGG | + | chr6_3:11978382-11978401 | Msa0939820:intron | 35.0% | |
| ACAAAAAAAAAAGGGCAACC+CGG | - | chr6_3:11978558-11978577 | None:intergenic | 35.0% | |
| TGCATTTAAGGGTTGAAGAA+AGG | - | chr6_3:11978728-11978747 | None:intergenic | 35.0% | |
| AGAACTCATGTTTGTGCAAT+AGG | + | chr6_3:11978807-11978826 | Msa0939820:CDS | 35.0% | |
| GAACTCATGTTTGTGCAATA+GGG | + | chr6_3:11978808-11978827 | Msa0939820:CDS | 35.0% | |
| ACGCACCAATGAATGTTATT+TGG | + | chr6_3:11978841-11978860 | Msa0939820:CDS | 35.0% | |
| ! | CGCACCAATGAATGTTATTT+GGG | + | chr6_3:11978842-11978861 | Msa0939820:CDS | 35.0% |
| ! | TAAGGCTTGTTTGTTTGTCT+TGG | + | chr6_3:11978913-11978932 | Msa0939820:intron | 35.0% |
| TGGTGTTTATTCTCAGTACA+GGG | + | chr6_3:11978968-11978987 | Msa0939820:intron | 35.0% | |
| CTGTTAAATAGCTGCTATAG+TGG | - | chr6_3:11979107-11979126 | None:intergenic | 35.0% | |
| CATTCGATTCCCTTTCATTT+AGG | + | chr6_3:11979302-11979321 | Msa0939820:intron | 35.0% | |
| TTTGCAAGTATGATACTTCC+GGG | - | chr6_3:11979366-11979385 | None:intergenic | 35.0% | |
| CTTTGCAAGTATGATACTTC+CGG | - | chr6_3:11979367-11979386 | None:intergenic | 35.0% | |
| !! | GCAAACTTTCAAGTTCACTT+TGG | - | chr6_3:11979476-11979495 | None:intergenic | 35.0% |
| !! | AAAATGATATTGGGGGTGTT+TGG | + | chr6_3:11979598-11979617 | Msa0939820:intron | 35.0% |
| GATTAAGGACCTCTTTGAAT+TGG | + | chr6_3:11979824-11979843 | Msa0939820:intron | 35.0% | |
| TTGTTTGTGGCGATTCATAA+TGG | - | chr6_3:11980034-11980053 | None:intergenic | 35.0% | |
| !!! | CTTATTTTGACATTTGGCAC+TGG | + | chr6_3:11980069-11980088 | Msa0939820:intron | 35.0% |
| CATGGTTAAGAGCTTCATTA+AGG | - | chr6_3:11980295-11980314 | None:intergenic | 35.0% | |
| CTCATTTATGAGCTAAGATG+TGG | - | chr6_3:11980378-11980397 | None:intergenic | 35.0% | |
| !!! | CAGTTGCAGTTTTAGAGTAC+GGG | - | chr6_3:11973776-11973795 | None:intergenic | 40.0% |
| ! | TTGAAACTTGAGTAATGGGG+TGG | + | chr6_3:11974179-11974198 | Msa0939820:intron | 40.0% |
| TGAATTTGACCAAATCAGGG+TGG | + | chr6_3:11974482-11974501 | Msa0939820:intron | 40.0% | |
| AAATGCCCTCAAAACAGCAA+TGG | - | chr6_3:11974735-11974754 | None:intergenic | 40.0% | |
| !! | TGATTCTTCTGAAATGGCTG+TGG | + | chr6_3:11974829-11974848 | Msa0939820:CDS | 40.0% |
| ATTGTAGTGCATGATTCTCC+AGG | - | chr6_3:11974929-11974948 | None:intergenic | 40.0% | |
| TGGAGAATCATGCACTACAA+TGG | + | chr6_3:11974928-11974947 | Msa0939820:CDS | 40.0% | |
| GAATCATGCACTACAATGGA+AGG | + | chr6_3:11974932-11974951 | Msa0939820:CDS | 40.0% | |
| GCAAAGATCGATGAAGAATG+TGG | + | chr6_3:11974959-11974978 | Msa0939820:CDS | 40.0% | |
| ! | TGATTCGGAAGGAAAAAGAC+CGG | + | chr6_3:11975003-11975022 | Msa0939820:CDS | 40.0% |
| !! | CTTGTCTGCTTCTGGTTTAA+GGG | + | chr6_3:11975225-11975244 | Msa0939820:CDS | 40.0% |
| GCTTGTGAAATAGAAGGGAT+TGG | + | chr6_3:11975259-11975278 | Msa0939820:CDS | 40.0% | |
| !! | TGAAATAGAAGGGATTGGTC+AGG | + | chr6_3:11975264-11975283 | Msa0939820:CDS | 40.0% |
| CATATGGATCAAGATCAACC+TGG | - | chr6_3:11975944-11975963 | None:intergenic | 40.0% | |
| !! | CAGGTTGATCTTGATCCATA+TGG | + | chr6_3:11975942-11975961 | Msa0939820:intron | 40.0% |
| GCCTTCTGTGTTTCTTGATT+CGG | + | chr6_3:11975968-11975987 | Msa0939820:CDS | 40.0% | |
| GATGTGTACTGCAACAGATA+TGG | + | chr6_3:11976022-11976041 | Msa0939820:CDS | 40.0% | |
| GGATATATTTACCTCTCGTC+GGG | - | chr6_3:11976190-11976209 | None:intergenic | 40.0% | |
| ! | ATATCCATGAAATGGCCTTG+AGG | + | chr6_3:11976204-11976223 | Msa0939820:CDS | 40.0% |
| GTGATGTGTAGTGTAGGAAA+AGG | - | chr6_3:11976738-11976757 | None:intergenic | 40.0% | |
| !!! | TAAGGCCCATTTGTTTTGGT+TGG | - | chr6_3:11976905-11976924 | None:intergenic | 40.0% |
| GACATGACTGCAAAACTAAG+AGG | - | chr6_3:11977162-11977181 | None:intergenic | 40.0% | |
| TCATATCTCTATCAGTGCAC+TGG | + | chr6_3:11977291-11977310 | Msa0939820:CDS | 40.0% | |
| TTGTTCTAACATGCCCTGTT+AGG | + | chr6_3:11977526-11977545 | Msa0939820:intron | 40.0% | |
| TGTTCTAACATGCCCTGTTA+GGG | + | chr6_3:11977527-11977546 | Msa0939820:intron | 40.0% | |
| AGCAGATAAGCTCATCCAAA+TGG | - | chr6_3:11977554-11977573 | None:intergenic | 40.0% | |
| ATAGGCTGAAAACAGCTTTC+AGG | - | chr6_3:11977619-11977638 | None:intergenic | 40.0% | |
| ACTAGTGTCAGACATTTACC+TGG | + | chr6_3:11977889-11977908 | Msa0939820:CDS | 40.0% | |
| GTCAGACATTTACCTGGATA+CGG | + | chr6_3:11977895-11977914 | Msa0939820:CDS | 40.0% | |
| !! | CTCAAGAATGCACTGATTGT+GGG | + | chr6_3:11977929-11977948 | Msa0939820:CDS | 40.0% |
| GGGAGAAAATTCATTATGGG+TGG | + | chr6_3:11977949-11977968 | Msa0939820:CDS | 40.0% | |
| CTCCTATCCATGATCAAGAA+TGG | + | chr6_3:11977986-11978005 | Msa0939820:CDS | 40.0% | |
| ACCCATTCTTGATCATGGAT+AGG | - | chr6_3:11977991-11978010 | None:intergenic | 40.0% | |
| AAGCTACCCATTCTTGATCA+TGG | - | chr6_3:11977996-11978015 | None:intergenic | 40.0% | |
| CAGGATAGCTGGATTTCATA+CGG | - | chr6_3:11978038-11978057 | None:intergenic | 40.0% | |
| !! | AGAGGTATGTGTGTTTTTGC+AGG | + | chr6_3:11978095-11978114 | Msa0939820:intron | 40.0% |
| !! | GAGGTATGTGTGTTTTTGCA+GGG | + | chr6_3:11978096-11978115 | Msa0939820:intron | 40.0% |
| GGTCTCTTCAATTTGATGTC+CGG | - | chr6_3:11978202-11978221 | None:intergenic | 40.0% | |
| CATCAAATTGAAGAGACCTC+CGG | + | chr6_3:11978204-11978223 | Msa0939820:intron | 40.0% | |
| ATCAAATTGAAGAGACCTCC+GGG | + | chr6_3:11978205-11978224 | Msa0939820:intron | 40.0% | |
| CAAGTAGTTGAATCATGACC+CGG | - | chr6_3:11978226-11978245 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr6_3:11978418-11978437 | Msa0939820:intron | 40.0% | |
| AAACAGCCTCGTGTATAAAC+AGG | + | chr6_3:11978460-11978479 | Msa0939820:intron | 40.0% | |
| AACAGCCTCGTGTATAAACA+GGG | + | chr6_3:11978461-11978480 | Msa0939820:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr6_3:11978492-11978511 | Msa0939820:intron | 40.0% | |
| GGATGGAGATGTGCATTTAA+GGG | - | chr6_3:11978739-11978758 | None:intergenic | 40.0% | |
| CAGCATTAATCACAGCAGAT+CGG | - | chr6_3:11978773-11978792 | None:intergenic | 40.0% | |
| CTCTTGCTTTCTCGTGTTTA+AGG | + | chr6_3:11978895-11978914 | Msa0939820:intron | 40.0% | |
| CTGGTGTTTATTCTCAGTAC+AGG | + | chr6_3:11978967-11978986 | Msa0939820:intron | 40.0% | |
| GGTGTTTATTCTCAGTACAG+GGG | + | chr6_3:11978969-11978988 | Msa0939820:intron | 40.0% | |
| CGATCTGCAATTGACAACAT+TGG | - | chr6_3:11979036-11979055 | None:intergenic | 40.0% | |
| AAATAACGGCTAAAGCGTAG+CGG | - | chr6_3:11979173-11979192 | None:intergenic | 40.0% | |
| TCATCCTATTAAAGGTCAGC+CGG | + | chr6_3:11979332-11979351 | Msa0939820:CDS | 40.0% | |
| !! | CGGAAGTATCATACTTGCAA+AGG | + | chr6_3:11979365-11979384 | Msa0939820:CDS | 40.0% |
| GTTACACATACCTGCAAAAC+AGG | - | chr6_3:11979393-11979412 | None:intergenic | 40.0% | |
| TATACTCGTAGGGAGAATGT+GGG | - | chr6_3:11979758-11979777 | None:intergenic | 40.0% | |
| TTATACTCGTAGGGAGAATG+TGG | - | chr6_3:11979759-11979778 | None:intergenic | 40.0% | |
| TAATAGGACCTCTGCATGTT+TGG | + | chr6_3:11980007-11980026 | Msa0939820:intron | 40.0% | |
| AATAGGACCTCTGCATGTTT+GGG | + | chr6_3:11980008-11980027 | Msa0939820:intron | 40.0% | |
| ! | CAAGATCGAGTTCTTGTTTG+TGG | - | chr6_3:11980047-11980066 | None:intergenic | 40.0% |
| CACAAACAAGAACTCGATCT+TGG | + | chr6_3:11980045-11980064 | Msa0939820:intron | 40.0% | |
| ACTTTACTGCACAGGATCAT+AGG | - | chr6_3:11980096-11980115 | None:intergenic | 40.0% | |
| CAAGGAAAACTTTACTGCAC+AGG | - | chr6_3:11980104-11980123 | None:intergenic | 40.0% | |
| TACCAAATCCCGAAAGAAAC+TGG | + | chr6_3:11980204-11980223 | Msa0939820:CDS | 40.0% | |
| ACCAAATCCCGAAAGAAACT+GGG | + | chr6_3:11980205-11980224 | Msa0939820:CDS | 40.0% | |
| ! | TTTTGGACCCCAGTTTCTTT+CGG | - | chr6_3:11980216-11980235 | None:intergenic | 40.0% |
| AAACTGGGGTCCAAAACTAA+GGG | + | chr6_3:11980220-11980239 | Msa0939820:CDS | 40.0% | |
| AGCAAACACATCTCTCTGTT+AGG | + | chr6_3:11980260-11980279 | Msa0939820:CDS | 40.0% | |
| !! | ATGGGTTTGTTGCACGAACT+AGG | - | chr6_3:11973801-11973820 | None:intergenic | 45.0% |
| !!! | TAATGGGGTGGTGCTGATTT+TGG | + | chr6_3:11974191-11974210 | Msa0939820:intron | 45.0% |
| ATCACATTGCCACCCTGATT+TGG | - | chr6_3:11974494-11974513 | None:intergenic | 45.0% | |
| !! | TTCTTCTGAAATGGCTGTGG+AGG | + | chr6_3:11974832-11974851 | Msa0939820:CDS | 45.0% |
| !! | GAGCAAGTTGATGATTCGGA+AGG | + | chr6_3:11974992-11975011 | Msa0939820:CDS | 45.0% |
| AACAGAACCTCAAGAACCCT+CGG | - | chr6_3:11975043-11975062 | None:intergenic | 45.0% | |
| ! | ATATAGGCCTTGTCTGCTTC+TGG | + | chr6_3:11975217-11975236 | Msa0939820:intron | 45.0% |
| CCTTAAACCAGAAGCAGACA+AGG | - | chr6_3:11975227-11975246 | None:intergenic | 45.0% | |
| !! | CCTTGTCTGCTTCTGGTTTA+AGG | + | chr6_3:11975224-11975243 | Msa0939820:CDS | 45.0% |
| ATTCCATGGTTATAAGGGCC+TGG | + | chr6_3:11975352-11975371 | Msa0939820:intron | 45.0% | |
| TAACCAGGCCCTTATAACCA+TGG | - | chr6_3:11975358-11975377 | None:intergenic | 45.0% | |
| CATCTGTTGAAGCTTGCAGA+AGG | + | chr6_3:11975551-11975570 | Msa0939820:CDS | 45.0% | |
| TTCGGTTGCAGTTTCCAAAG+TGG | + | chr6_3:11975591-11975610 | Msa0939820:CDS | 45.0% | |
| AGCAAGATGAGACTCCACTT+TGG | - | chr6_3:11975608-11975627 | None:intergenic | 45.0% | |
| AACACAGAAGGCGAACCATA+TGG | - | chr6_3:11975960-11975979 | None:intergenic | 45.0% | |
| GCCGAATCAAGAAACACAGA+AGG | - | chr6_3:11975972-11975991 | None:intergenic | 45.0% | |
| GCAGTTCAATCTGTTGCTGA+TGG | + | chr6_3:11975990-11976009 | Msa0939820:CDS | 45.0% | |
| GTTCAATCTGTTGCTGATGG+AGG | + | chr6_3:11975993-11976012 | Msa0939820:CDS | 45.0% | |
| ACAGATATGGCTGTACTCTG+CGG | + | chr6_3:11976035-11976054 | Msa0939820:CDS | 45.0% | |
| GATCGTTCTTGCTTCCATTG+AGG | + | chr6_3:11976226-11976245 | Msa0939820:CDS | 45.0% | |
| ! | ATGCAGCTGGGTTTTCTCAT+TGG | + | chr6_3:11976589-11976608 | Msa0939820:intron | 45.0% |
| GTCATGCTAACCGATACAAG+CGG | + | chr6_3:11977065-11977084 | Msa0939820:CDS | 45.0% | |
| CATCCAAATGGACCCTAACA+GGG | - | chr6_3:11977542-11977561 | None:intergenic | 45.0% | |
| TCATCCAAATGGACCCTAAC+AGG | - | chr6_3:11977543-11977562 | None:intergenic | 45.0% | |
| !! | TAAGCACCGAAGAGACTGTT+TGG | + | chr6_3:11977577-11977596 | Msa0939820:intron | 45.0% |
| !! | AAGCACCGAAGAGACTGTTT+GGG | + | chr6_3:11977578-11977597 | Msa0939820:intron | 45.0% |
| GTTCTCCCAAACAGTCTCTT+CGG | - | chr6_3:11977586-11977605 | None:intergenic | 45.0% | |
| CCACAATCAGTGCATTCTTG+AGG | - | chr6_3:11977931-11977950 | None:intergenic | 45.0% | |
| !! | CCTCAAGAATGCACTGATTG+TGG | + | chr6_3:11977928-11977947 | Msa0939820:CDS | 45.0% |
| TGGATAGGAGCAGACCATAT+GGG | - | chr6_3:11977976-11977995 | None:intergenic | 45.0% | |
| ATGGATAGGAGCAGACCATA+TGG | - | chr6_3:11977977-11977996 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr6_3:11978424-11978443 | Msa0939820:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr6_3:11978425-11978444 | Msa0939820:intron | 45.0% | |
| ! | TTATACACGAGGCTGTTTCC+AGG | - | chr6_3:11978458-11978477 | None:intergenic | 45.0% |
| CCTTACCCTGTTTATACACG+AGG | - | chr6_3:11978469-11978488 | None:intergenic | 45.0% | |
| CCTCGTGTATAAACAGGGTA+AGG | + | chr6_3:11978466-11978485 | Msa0939820:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr6_3:11978488-11978507 | Msa0939820:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr6_3:11978491-11978510 | Msa0939820:intron | 45.0% | |
| CGGATGGAGATGTGCATTTA+AGG | - | chr6_3:11978740-11978759 | None:intergenic | 45.0% | |
| AGCAGATCGGAAGATAACTG+CGG | - | chr6_3:11978760-11978779 | None:intergenic | 45.0% | |
| CGATCTGCTGTGATTAATGC+TGG | + | chr6_3:11978771-11978790 | Msa0939820:CDS | 45.0% | |
| GCTACGCTTTAGCCGTTATT+TGG | + | chr6_3:11979172-11979191 | Msa0939820:intron | 45.0% | |
| ! | TGCAAAGGAACCTGTTTTGC+AGG | + | chr6_3:11979380-11979399 | Msa0939820:CDS | 45.0% |
| GCAGGTATGTGTAACCATTC+AGG | + | chr6_3:11979398-11979417 | Msa0939820:intron | 45.0% | |
| ATAATGGCCCAAACATGCAG+AGG | - | chr6_3:11980018-11980037 | None:intergenic | 45.0% | |
| CGAGCAAAATTAACCTGAGG+AGG | - | chr6_3:11980134-11980153 | None:intergenic | 45.0% | |
| GCTCGAGCAAAATTAACCTG+AGG | - | chr6_3:11980137-11980156 | None:intergenic | 45.0% | |
| CCAAATCCCGAAAGAAACTG+GGG | + | chr6_3:11980206-11980225 | Msa0939820:CDS | 45.0% | |
| TTTGGACCCCAGTTTCTTTC+GGG | - | chr6_3:11980215-11980234 | None:intergenic | 45.0% | |
| GAAACTGGGGTCCAAAACTA+AGG | + | chr6_3:11980219-11980238 | Msa0939820:CDS | 45.0% | |
| !!! | TTTAAGTTTTTTAAATTAAT+TGG | + | chr6_3:11976381-11976400 | Msa0939820:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTGATATT+TGG | + | chr6_3:11980597-11980616 | Msa0939820:three_prime_UTR | 5.0% |
| ! | GATTGGTCAGGTTGTTGCTC+TGG | + | chr6_3:11975276-11975295 | Msa0939820:CDS | 50.0% |
| CAACGATCCAGGTGCTTAAC+CGG | + | chr6_3:11975300-11975319 | Msa0939820:intron | 50.0% | |
| TCATGAACCGGTTAAGCACC+TGG | - | chr6_3:11975310-11975329 | None:intergenic | 50.0% | |
| TTCTATCTGCACGACTGCAG+TGG | + | chr6_3:11975857-11975876 | Msa0939820:intron | 50.0% | |
| GCTGTACTCTGCGGTTCAAA+CGG | + | chr6_3:11976044-11976063 | Msa0939820:CDS | 50.0% | |
| CTGTACTCTGCGGTTCAAAC+GGG | + | chr6_3:11976045-11976064 | Msa0939820:CDS | 50.0% | |
| TGTACTCTGCGGTTCAAACG+GGG | + | chr6_3:11976046-11976065 | Msa0939820:CDS | 50.0% | |
| TATGGATCATACCCGACGAG+AGG | + | chr6_3:11976176-11976195 | Msa0939820:CDS | 50.0% | |
| CGATCCTCAAGGCCATTTCA+TGG | - | chr6_3:11976211-11976230 | None:intergenic | 50.0% | |
| GGAAGCAAGAACGATCCTCA+AGG | - | chr6_3:11976222-11976241 | None:intergenic | 50.0% | |
| !!! | GGCCCATTTGTTTTGGTTGG+TGG | - | chr6_3:11976902-11976921 | None:intergenic | 50.0% |
| TTCTTTCCACCTTCAACCCC+TGG | + | chr6_3:11977320-11977339 | Msa0939820:CDS | 50.0% | |
| TCTTTCCACCTTCAACCCCT+GGG | + | chr6_3:11977321-11977340 | Msa0939820:CDS | 50.0% | |
| ATGCCCTGTTAGGGTCCATT+TGG | + | chr6_3:11977536-11977555 | Msa0939820:intron | 50.0% | |
| GTGCATTCTTGAGGAACAGC+AGG | - | chr6_3:11977922-11977941 | None:intergenic | 50.0% | |
| TCATTATGGGTGGCCCCATA+TGG | + | chr6_3:11977959-11977978 | Msa0939820:CDS | 50.0% | |
| GGATAGGAGCAGACCATATG+GGG | - | chr6_3:11977975-11977994 | None:intergenic | 50.0% | |
| GTGTTCGTAAGCAGGATAGC+TGG | - | chr6_3:11978049-11978068 | None:intergenic | 50.0% | |
| GCGGATATGTGTTCGTAAGC+AGG | - | chr6_3:11978057-11978076 | None:intergenic | 50.0% | |
| GTAGTTGAATCATGACCCGG+AGG | - | chr6_3:11978223-11978242 | None:intergenic | 50.0% | |
| CCAAACCAGACAGTTAACCG+CGG | - | chr6_3:11978272-11978291 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr6_3:11978402-11978421 | None:intergenic | 50.0% | |
| GATCGGAAGATAACTGCGGA+TGG | - | chr6_3:11978756-11978775 | None:intergenic | 50.0% | |
| ! | TTTGGGACATAATGCGCTGC+TGG | + | chr6_3:11978859-11978878 | Msa0939820:CDS | 50.0% |
| TTGGGACATAATGCGCTGCT+GGG | + | chr6_3:11978860-11978879 | Msa0939820:CDS | 50.0% | |
| ACATAATGCGCTGCTGGGTA+AGG | + | chr6_3:11978865-11978884 | Msa0939820:intron | 50.0% | |
| CATAATGCGCTGCTGGGTAA+GGG | + | chr6_3:11978866-11978885 | Msa0939820:intron | 50.0% | |
| GGCATTATAGCACTGTAGCG+TGG | - | chr6_3:11979086-11979105 | None:intergenic | 50.0% | |
| ! | TCTGCCGGCTGACCTTTAAT+AGG | - | chr6_3:11979339-11979358 | None:intergenic | 50.0% |
| !! | ATACTTCCGGGTTGATCTGC+CGG | - | chr6_3:11979354-11979373 | None:intergenic | 50.0% |
| ! | GTAGGGCGATTTTCCCTTCT+CGG | + | chr6_3:11979440-11979459 | Msa0939820:intron | 50.0% |
| TCCTTGTCTATGTCCTCCTC+AGG | + | chr6_3:11980118-11980137 | Msa0939820:intron | 50.0% | |
| ACCTGAGGAGGACATAGACA+AGG | - | chr6_3:11980122-11980141 | None:intergenic | 50.0% | |
| AGCTGTAGCGTCTCTTAGCA+AGG | + | chr6_3:11980154-11980173 | Msa0939820:CDS | 50.0% | |
| CACAAGCGAAGAAAGTTGCG+AGG | + | chr6_3:11980177-11980196 | Msa0939820:CDS | 50.0% | |
| CCCCAGTTTCTTTCGGGATT+TGG | - | chr6_3:11980209-11980228 | None:intergenic | 50.0% | |
| TTGGCGGAAGAGACATCTCC+TGG | + | chr6_3:11974908-11974927 | Msa0939820:CDS | 55.0% | |
| AGGAAAAAGACCGGCAGAGC+TGG | + | chr6_3:11975012-11975031 | Msa0939820:CDS | 55.0% | |
| AGAACCTCAAGAACCCTCGG+TGG | - | chr6_3:11975040-11975059 | None:intergenic | 55.0% | |
| ! | GTTGCTCTGGACAACGATCC+AGG | + | chr6_3:11975289-11975308 | Msa0939820:CDS | 55.0% |
| AACCAACGTCTGGCCTGTAG+TGG | + | chr6_3:11975413-11975432 | Msa0939820:intron | 55.0% | |
| AACCACTACAGGCCAGACGT+TGG | - | chr6_3:11975418-11975437 | None:intergenic | 55.0% | |
| AACGTCTGGCCTGTAGTGGT+TGG | + | chr6_3:11975417-11975436 | Msa0939820:intron | 55.0% | |
| CTTTCCACCTTCAACCCCTG+GGG | + | chr6_3:11977322-11977341 | Msa0939820:CDS | 55.0% | |
| TTGGAAATGGTCCTCCCCAG+GGG | - | chr6_3:11977339-11977358 | None:intergenic | 55.0% | |
| CTTGGAAATGGTCCTCCCCA+GGG | - | chr6_3:11977340-11977359 | None:intergenic | 55.0% | |
| CCGCGGTTAACTGTCTGGTT+TGG | + | chr6_3:11978269-11978288 | Msa0939820:intron | 55.0% | |
| TATTCCAGCCTTGGCGCAAC+TGG | + | chr6_3:11978391-11978410 | Msa0939820:intron | 55.0% | |
| TTTACCAGTTGCGCCAAGGC+TGG | - | chr6_3:11978398-11978417 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr6_3:11978437-11978456 | Msa0939820:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr6_3:11978531-11978550 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr6_3:11978532-11978551 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr6_3:11978536-11978555 | Msa0939820:intron | 55.0% |
| TGGGGTCCAAAACTAAGGGC+AGG | + | chr6_3:11980224-11980243 | Msa0939820:CDS | 55.0% | |
| ! | GTGCGTCCTGCCCTTAGTTT+TGG | - | chr6_3:11980233-11980252 | None:intergenic | 55.0% |
| ACTCTGCGGTTCAAACGGGG+AGG | + | chr6_3:11976049-11976068 | Msa0939820:CDS | 60.0% | |
| CCTTGGAAATGGTCCTCCCC+AGG | - | chr6_3:11977341-11977360 | None:intergenic | 60.0% | |
| CCTGGGGAGGACCATTTCCA+AGG | + | chr6_3:11977338-11977357 | Msa0939820:CDS | 60.0% | |
| GGAACAGCAGGACCGTATCC+AGG | - | chr6_3:11977910-11977929 | None:intergenic | 60.0% | |
| TACTCAAACGGGGACAGCCG+CGG | + | chr6_3:11978252-11978271 | Msa0939820:intron | 60.0% | |
| GACAGCCGCGGTTAACTGTC+TGG | + | chr6_3:11978264-11978283 | Msa0939820:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr6_3:11978504-11978523 | Msa0939820:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr6_3:11978537-11978556 | Msa0939820:intron | 60.0% |
| GGAGCCACCGAGGGTTCTTG+AGG | + | chr6_3:11975033-11975052 | Msa0939820:CDS | 65.0% | |
| TCCACCTTCAACCCCTGGGG+AGG | + | chr6_3:11977325-11977344 | Msa0939820:CDS | 65.0% | |
| TCCTCCCCAGGGGTTGAAGG+TGG | - | chr6_3:11977329-11977348 | None:intergenic | 65.0% | |
| TGGTCCTCCCCAGGGGTTGA+AGG | - | chr6_3:11977332-11977351 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr6_3:11978506-11978525 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr6_3:11978519-11978538 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr6_3:11978520-11978539 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr6_3:11978519-11978538 | Msa0939820:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr6_3:11978520-11978539 | Msa0939820:intron | 65.0% | |
| GGTCAGCCGGCAGATCAACC+CGG | + | chr6_3:11979345-11979364 | Msa0939820:CDS | 65.0% | |
| CTCGGTGGCTCCAGCTCTGC+CGG | - | chr6_3:11975025-11975044 | None:intergenic | 70.0% | |
| GGCAGAGCTGGAGCCACCGA+GGG | + | chr6_3:11975024-11975043 | Msa0939820:CDS | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr6_3:11978521-11978540 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr6_3:11978525-11978544 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr6_3:11978526-11978545 | None:intergenic | 70.0% | |
| TGGCTGCGCGCAGCCGAGAA+GGG | - | chr6_3:11979456-11979475 | None:intergenic | 70.0% | |
| TTGGCTGCGCGCAGCCGAGA+AGG | - | chr6_3:11979457-11979476 | None:intergenic | 70.0% | |
| CGGCAGAGCTGGAGCCACCG+AGG | + | chr6_3:11975023-11975042 | Msa0939820:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 11973670 | 11980669 | 11973670 | ID=Msa0939820;Name=Msa0939820 |
| chr6_3 | mRNA | 11973670 | 11980669 | 11973670 | ID=Msa0939820-mRNA-1;Parent=Msa0939820;Name=Msa0939820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=81|1|1|1|1|1|12|284|653 |
| chr6_3 | exon | 11973670 | 11974020 | 11973670 | ID=Msa0939820-mRNA-1:exon:3905;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11974713 | 11975054 | 11974713 | ID=Msa0939820-mRNA-1:exon:3906;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11975223 | 11975310 | 11975223 | ID=Msa0939820-mRNA-1:exon:3907;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11975551 | 11975672 | 11975551 | ID=Msa0939820-mRNA-1:exon:3908;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11975945 | 11976084 | 11975945 | ID=Msa0939820-mRNA-1:exon:3909;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11976175 | 11976247 | 11976175 | ID=Msa0939820-mRNA-1:exon:3910;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11977064 | 11977152 | 11977064 | ID=Msa0939820-mRNA-1:exon:3911;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11977254 | 11977359 | 11977254 | ID=Msa0939820-mRNA-1:exon:3912;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11977886 | 11978098 | 11977886 | ID=Msa0939820-mRNA-1:exon:3913;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11978687 | 11978881 | 11978687 | ID=Msa0939820-mRNA-1:exon:3914;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11979324 | 11979401 | 11979324 | ID=Msa0939820-mRNA-1:exon:3915;Parent=Msa0939820-mRNA-1 |
| chr6_3 | exon | 11980140 | 11980669 | 11980140 | ID=Msa0939820-mRNA-1:exon:3916;Parent=Msa0939820-mRNA-1 |
| chr6_3 | five_prime_UTR | 11973670 | 11973750 | 11973670 | ID=Msa0939820-mRNA-1:five_prime_utr;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11973751 | 11974020 | 11973751 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11974713 | 11975054 | 11974713 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11975223 | 11975310 | 11975223 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11975551 | 11975672 | 11975551 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11975945 | 11976084 | 11975945 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11976175 | 11976247 | 11976175 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11977064 | 11977152 | 11977064 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11977254 | 11977359 | 11977254 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11977886 | 11978098 | 11977886 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11978687 | 11978881 | 11978687 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11979324 | 11979401 | 11979324 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | CDS | 11980140 | 11980385 | 11980140 | ID=Msa0939820-mRNA-1:cds;Parent=Msa0939820-mRNA-1 |
| chr6_3 | three_prime_UTR | 11980386 | 11980669 | 11980386 | ID=Msa0939820-mRNA-1:three_prime_utr;Parent=Msa0939820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
