Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024930 | XP_013468062.1 | 99.120 | 341 | 3 | 0 | 1 | 341 | 1 | 341 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024930 | sp|Q9LUG5|RPF2_ARATH | 71.246 | 313 | 88 | 2 | 28 | 340 | 3 | 313 | 6.41e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0024930 | 0.816557 | 5.200337e-52 | -8.615850e-47 |
| Msa0024930 | Msa0090550 | 0.809918 | 1.492291e-50 | -8.615850e-47 |
| Msa0024930 | Msa0093010 | 0.802768 | 4.796817e-49 | -8.615850e-47 |
| Msa0024930 | Msa0120880 | 0.821638 | 3.630355e-53 | -8.615850e-47 |
| Msa0024930 | Msa0139670 | 0.821176 | 4.640375e-53 | -8.615850e-47 |
| Msa0024930 | Msa0149440 | 0.824925 | 6.195941e-54 | -8.615850e-47 |
| Msa0024930 | Msa0177960 | 0.840292 | 9.493609e-58 | -8.615850e-47 |
| Msa0024930 | Msa0183870 | 0.834626 | 2.688741e-56 | -8.615850e-47 |
| Msa0024930 | Msa0188350 | 0.809483 | 1.850699e-50 | -8.615850e-47 |
| Msa0024930 | Msa0191080 | 0.805161 | 1.525738e-49 | -8.615850e-47 |
| Msa0024930 | Msa0194920 | 0.813526 | 2.447964e-51 | -8.615850e-47 |
| Msa0024930 | Msa0204960 | 0.829580 | 4.753355e-55 | -8.615850e-47 |
| Msa0024930 | Msa0207670 | 0.835330 | 1.787045e-56 | -8.615850e-47 |
| Msa0024930 | Msa0207700 | 0.835825 | 1.339381e-56 | -8.615850e-47 |
| Msa0024930 | Msa0209350 | 0.802571 | 5.266124e-49 | -8.615850e-47 |
| Msa0024930 | Msa0217670 | 0.828156 | 1.051450e-54 | -8.615850e-47 |
| Msa0024930 | Msa0231790 | 0.800613 | 1.327639e-48 | -8.615850e-47 |
| Msa0024930 | Msa0244970 | 0.809055 | 2.285962e-50 | -8.615850e-47 |
| Msa0024930 | Msa0244980 | 0.829886 | 4.004088e-55 | -8.615850e-47 |
| Msa0024930 | Msa0245580 | 0.822529 | 2.256630e-53 | -8.615850e-47 |
| Msa0024930 | Msa0249580 | 0.820386 | 7.050201e-53 | -8.615850e-47 |
| Msa0024930 | Msa0257490 | 0.859174 | 4.964377e-63 | -8.615850e-47 |
| Msa0024930 | Msa0269470 | 0.806772 | 6.994617e-50 | -8.615850e-47 |
| Msa0024930 | Msa0275360 | 0.800775 | 1.230105e-48 | -8.615850e-47 |
| Msa0024930 | Msa0278570 | 0.838242 | 3.230362e-57 | -8.615850e-47 |
| Msa0024930 | Msa0281530 | 0.879960 | 8.130626e-70 | -8.615850e-47 |
| Msa0024930 | Msa0296630 | -0.832622 | 8.510586e-56 | -8.615850e-47 |
| Msa0024930 | Msa0296790 | 0.846408 | 2.213319e-59 | -8.615850e-47 |
| Msa0024930 | Msa0320590 | 0.848405 | 6.257474e-60 | -8.615850e-47 |
| Msa0024930 | Msa0321690 | 0.806421 | 8.292127e-50 | -8.615850e-47 |
| Msa0024930 | Msa0348830 | 0.801110 | 1.050753e-48 | -8.615850e-47 |
| Msa0024930 | Msa0377820 | 0.816047 | 6.761317e-52 | -8.615850e-47 |
| Msa0024930 | Msa0385500 | 0.861010 | 1.384993e-63 | -8.615850e-47 |
| Msa0024930 | Msa0437020 | 0.816221 | 6.182987e-52 | -8.615850e-47 |
| Msa0024930 | Msa0450400 | -0.800765 | 1.235948e-48 | -8.615850e-47 |
| Msa0024930 | Msa0450480 | 0.809340 | 1.986396e-50 | -8.615850e-47 |
| Msa0024930 | Msa0459100 | 0.822265 | 2.597857e-53 | -8.615850e-47 |
| Msa0024930 | Msa0462600 | 0.818226 | 2.188843e-52 | -8.615850e-47 |
| Msa0024930 | Msa0472930 | 0.807366 | 5.235319e-50 | -8.615850e-47 |
| Msa0024930 | Msa0496450 | 0.810998 | 8.723620e-51 | -8.615850e-47 |
| Msa0024930 | Msa0544160 | 0.846049 | 2.772077e-59 | -8.615850e-47 |
| Msa0024930 | Msa0547160 | 0.803733 | 3.028555e-49 | -8.615850e-47 |
| Msa0024930 | Msa0581110 | 0.812918 | 3.329235e-51 | -8.615850e-47 |
| Msa0024930 | Msa0588260 | 0.810908 | 9.123439e-51 | -8.615850e-47 |
| Msa0024930 | Msa0600080 | 0.823098 | 1.663081e-53 | -8.615850e-47 |
| Msa0024930 | Msa0600420 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa0024930 | Msa0604290 | 0.800331 | 1.515553e-48 | -8.615850e-47 |
| Msa0024930 | Msa0615580 | 0.818605 | 1.796061e-52 | -8.615850e-47 |
| Msa0024930 | Msa0642970 | 0.812100 | 5.023577e-51 | -8.615850e-47 |
| Msa0024930 | Msa0672550 | 0.804711 | 1.894573e-49 | -8.615850e-47 |
| Msa0024930 | Msa0677530 | 0.801677 | 8.041987e-49 | -8.615850e-47 |
| Msa0024930 | Msa0682680 | 0.809312 | 2.013765e-50 | -8.615850e-47 |
| Msa0024930 | Msa0689440 | 0.826384 | 2.794551e-54 | -8.615850e-47 |
| Msa0024930 | Msa0709120 | 0.822299 | 2.550962e-53 | -8.615850e-47 |
| Msa0024930 | Msa0722300 | -0.802151 | 6.428808e-49 | -8.615850e-47 |
| Msa0024930 | Msa0794050 | 0.802937 | 4.426857e-49 | -8.615850e-47 |
| Msa0024930 | Msa0878860 | 0.828535 | 8.518023e-55 | -8.615850e-47 |
| Msa0024930 | Msa0933380 | 0.804599 | 1.999787e-49 | -8.615850e-47 |
| Msa0024930 | Msa0939820 | 0.824465 | 7.955006e-54 | -8.615850e-47 |
| Msa0024930 | Msa0944200 | 0.803306 | 3.713292e-49 | -8.615850e-47 |
| Msa0024930 | Msa0958000 | 0.856060 | 4.151013e-62 | -8.615850e-47 |
| Msa0024930 | Msa0980540 | 0.809476 | 1.857281e-50 | -8.615850e-47 |
| Msa0024930 | Msa1021520 | 0.836461 | 9.233578e-57 | -8.615850e-47 |
| Msa0024930 | Msa1037520 | 0.800811 | 1.209889e-48 | -8.615850e-47 |
| Msa0024930 | Msa1072710 | 0.819412 | 1.177663e-52 | -8.615850e-47 |
| Msa0024930 | Msa1123350 | 0.805186 | 1.507468e-49 | -8.615850e-47 |
| Msa0024930 | Msa1123770 | 0.802924 | 4.453465e-49 | -8.615850e-47 |
| Msa0024930 | Msa1126830 | 0.811685 | 6.187665e-51 | -8.615850e-47 |
| Msa0024930 | Msa1128280 | 0.800313 | 1.528131e-48 | -8.615850e-47 |
| Msa0024930 | Msa1165270 | 0.807220 | 5.622194e-50 | -8.615850e-47 |
| Msa0024930 | Msa1165780 | 0.820335 | 7.243656e-53 | -8.615850e-47 |
| Msa0024930 | Msa1169910 | 0.802362 | 5.815372e-49 | -8.615850e-47 |
| Msa0024930 | Msa1235610 | 0.800944 | 1.136269e-48 | -8.615850e-47 |
| Msa0024930 | Msa1264210 | 0.807624 | 4.614874e-50 | -8.615850e-47 |
| Msa0024930 | Msa1265590 | 0.817871 | 2.633327e-52 | -8.615850e-47 |
| Msa0024930 | Msa1271130 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0024930 | Msa1275480 | -0.809512 | 1.824047e-50 | -8.615850e-47 |
| Msa0024930 | Msa1315890 | 0.826739 | 2.299394e-54 | -8.615850e-47 |
| Msa0024930 | Msa1365800 | 0.815139 | 1.077220e-51 | -8.615850e-47 |
| Msa0024930 | Msa1368530 | 0.812739 | 3.643874e-51 | -8.615850e-47 |
| Msa0024930 | Msa1385720 | 0.804500 | 2.097286e-49 | -8.615850e-47 |
| Msa0024930 | Msa1421560 | 0.808832 | 2.551376e-50 | -8.615850e-47 |
| Msa0024930 | Msa1434090 | 0.817400 | 3.362937e-52 | -8.615850e-47 |
| Msa0024930 | Msa1435390 | 0.822943 | 1.807246e-53 | -8.615850e-47 |
| Msa0024930 | Msa1454680 | 0.852000 | 6.150350e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024930 | MtrunA17_Chr1g0179301 | 99.120 | 341 | 3 | 0 | 1 | 341 | 1 | 341 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024930 | AT3G23620.1 | 71.246 | 313 | 88 | 2 | 28 | 340 | 3 | 313 | 6.51e-159 | 447 |
Find 96 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGATTGCAGTCTCTTTC+TGG | 0.136562 | 1_1:+47826576 | Msa0024930:CDS |
| TGAGGGCGAGTTTGCCCTTA+TGG | 0.218905 | 1_1:-47826271 | None:intergenic |
| GTAATGATGGTTACGAGTTT+TGG | 0.263003 | 1_1:-47826305 | None:intergenic |
| ACATTATGCTTACAATTAAA+TGG | 0.265469 | 1_1:-47830142 | None:intergenic |
| ATTAATGAACGTATTAAAAT+AGG | 0.271829 | 1_1:-47830236 | None:intergenic |
| ATGTTCTGATATACTTTATA+AGG | 0.271920 | 1_1:-47830320 | None:intergenic |
| ACTTCTACCAATTCCATTCT+TGG | 0.274683 | 1_1:-47829488 | None:intergenic |
| GTTTCTGCTGCTTGGCTTCT+CGG | 0.282208 | 1_1:-47829916 | None:intergenic |
| CAAAGAAAAGACCTTCGTTT+TGG | 0.313563 | 1_1:-47826133 | None:intergenic |
| ATTTCCAATCTTTCCTTGTA+AGG | 0.319160 | 1_1:-47829723 | None:intergenic |
| AGTTGGTCCTTCCATGGATA+TGG | 0.326164 | 1_1:+47829508 | Msa0024930:CDS |
| GTTCAAAACCGCACTCGTTT+TGG | 0.326227 | 1_1:-47826431 | None:intergenic |
| TCCCCAATGAAAGCCATAAA+AGG | 0.334452 | 1_1:-47829193 | None:intergenic |
| AGCTGGTGGTGAAACCTCTT+TGG | 0.334516 | 1_1:+47826537 | Msa0024930:CDS |
| GAGGGCGAGTTTGCCCTTAT+GGG | 0.337355 | 1_1:-47826270 | None:intergenic |
| AAGGGACAAGCCAAAGAAAA+AGG | 0.337552 | 1_1:+47829589 | Msa0024930:CDS |
| AAAGGCTTTGATCCTTCCTT+TGG | 0.354826 | 1_1:-47829175 | None:intergenic |
| AAGAAAACGTTGTTGCTTCA+TGG | 0.355781 | 1_1:+47826406 | Msa0024930:CDS |
| GTGGAGAATTTAAATCTTGC+CGG | 0.361028 | 1_1:+47829371 | Msa0024930:CDS |
| ACTCCCATGTTTCTGCTGCT+TGG | 0.361871 | 1_1:-47829924 | None:intergenic |
| CTCCCGAGAACAAGGTTATT+AGG | 0.367924 | 1_1:-47829061 | None:intergenic |
| AATTGTTTAGATTGGAGAAA+TGG | 0.368193 | 1_1:+47829856 | Msa0024930:intron |
| TTCACTCCTTTCGATTTATT+AGG | 0.370859 | 1_1:-47829884 | None:intergenic |
| ATAGGAGAAGAATGTCAAAA+AGG | 0.389857 | 1_1:+47829697 | Msa0024930:intron |
| TCCTTCATCACACTTTCATT+AGG | 0.397326 | 1_1:-47829551 | None:intergenic |
| CTTCTACCAATTCCATTCTT+GGG | 0.402072 | 1_1:-47829487 | None:intergenic |
| GTCCCTCTTACCTTCTGATC+TGG | 0.404383 | 1_1:-47829755 | None:intergenic |
| TACTGCCCTGTCTCCAACTA+AGG | 0.416338 | 1_1:+47829415 | Msa0024930:CDS |
| GATCCCTTACAAGGAAAGAT+TGG | 0.422525 | 1_1:+47829719 | Msa0024930:CDS |
| AGTTGTCCCAAGAATGGAAT+TGG | 0.444927 | 1_1:+47829481 | Msa0024930:CDS |
| GGATAAAGGTCGTCTAAATC+AGG | 0.447679 | 1_1:-47830180 | None:intergenic |
| TTCATTAATTTATGTTCAGA+TGG | 0.447875 | 1_1:+47830250 | Msa0024930:three_prime_UTR |
| AGACCTAATAACCTTGTTCT+CGG | 0.458179 | 1_1:+47829058 | Msa0024930:CDS |
| ACTAATCCACTCGAGGATAA+AGG | 0.460298 | 1_1:-47830194 | None:intergenic |
| TTCAGATGGGTATAGTTTCA+AGG | 0.466774 | 1_1:+47830264 | Msa0024930:three_prime_UTR |
| CAGAACCGCCACAACCCATA+AGG | 0.468050 | 1_1:+47826256 | Msa0024930:CDS |
| TCAGATTTATCATTTGAAGA+AGG | 0.468460 | 1_1:+47826465 | Msa0024930:CDS |
| GAGTTTGCCCTTATGGGTTG+TGG | 0.476342 | 1_1:-47826264 | None:intergenic |
| TGGCACAGTTGTCCCAAGAA+TGG | 0.482338 | 1_1:+47829475 | Msa0024930:CDS |
| TTCATCACACTTTCATTAGG+AGG | 0.486397 | 1_1:-47829548 | None:intergenic |
| TTTATGGCTTTCATTGGGGA+AGG | 0.487396 | 1_1:+47829196 | Msa0024930:CDS |
| CTTTGCTGCCTTCTTCACAA+TGG | 0.487536 | 1_1:+47826151 | Msa0024930:exon |
| TCCTAATGAAAGTGTGATGA+AGG | 0.493736 | 1_1:+47829550 | Msa0024930:CDS |
| GAAGCCAAGCAGCAGAAACA+TGG | 0.494056 | 1_1:+47829920 | Msa0024930:CDS |
| GTTTCACCACCAGCTTCAAA+AGG | 0.496777 | 1_1:-47826529 | None:intergenic |
| TTTCCAATCTTTCCTTGTAA+GGG | 0.502446 | 1_1:-47829722 | None:intergenic |
| TCTGAAACTGTGCTGTGTGA+GGG | 0.504887 | 1_1:-47826175 | None:intergenic |
| TTCATGATCAAAAGACAGGC+AGG | 0.510453 | 1_1:-47830023 | None:intergenic |
| GTCTATGATCTGATAGAAGT+TGG | 0.514759 | 1_1:+47829100 | Msa0024930:CDS |
| GACAGGCAGGGAAAGACAAT+AGG | 0.520590 | 1_1:-47830010 | None:intergenic |
| TTCTGAAACTGTGCTGTGTG+AGG | 0.522167 | 1_1:-47826176 | None:intergenic |
| TCATTAATTTATGTTCAGAT+GGG | 0.524102 | 1_1:+47830251 | Msa0024930:three_prime_UTR |
| ATAAATCGAAAGGAGTGAAG+AGG | 0.524729 | 1_1:+47829888 | Msa0024930:CDS |
| CATACATTCTCCCGAGAACA+AGG | 0.525815 | 1_1:-47829069 | None:intergenic |
| GACCTAATAACCTTGTTCTC+GGG | 0.526089 | 1_1:+47829059 | Msa0024930:CDS |
| AAAACACCTTAGTTGGAGAC+AGG | 0.528374 | 1_1:-47829421 | None:intergenic |
| TATAATTTGATCTACTACAA+TGG | 0.529365 | 1_1:-47830051 | None:intergenic |
| GGTAGAAGTTGGTCCTTCCA+TGG | 0.530363 | 1_1:+47829502 | Msa0024930:CDS |
| CAAAACTCATTCCCTGCAAG+GGG | 0.531812 | 1_1:-47830116 | None:intergenic |
| AGAACCGCCACAACCCATAA+GGG | 0.532404 | 1_1:+47826257 | Msa0024930:CDS |
| AGAATGGAATTGGTAGAAGT+TGG | 0.538211 | 1_1:+47829491 | Msa0024930:CDS |
| AACAAAACTCATTCCCTGCA+AGG | 0.543701 | 1_1:-47830118 | None:intergenic |
| TTTCAGAACCGCCACAATCA+AGG | 0.545213 | 1_1:+47826191 | Msa0024930:CDS |
| GTGAGGGGCCATTGTGAAGA+AGG | 0.548125 | 1_1:-47826159 | None:intergenic |
| TCGCTTCATGATCAAAAGAC+AGG | 0.548955 | 1_1:-47830027 | None:intergenic |
| CTGAAACTGTGCTGTGTGAG+GGG | 0.551013 | 1_1:-47826174 | None:intergenic |
| TTTCATTAGGAGGACGATGC+CGG | 0.551349 | 1_1:-47829538 | None:intergenic |
| GAATTTAAATCTTGCCGGAG+TGG | 0.559897 | 1_1:+47829376 | Msa0024930:CDS |
| CCGGCGAATAACCATATCCA+TGG | 0.560635 | 1_1:-47829519 | None:intergenic |
| TGATAAGAAAATAGCTCCAA+AGG | 0.560881 | 1_1:+47829159 | Msa0024930:CDS |
| AGGAAGCCATGAAAACTTCA+AGG | 0.562762 | 1_1:+47829570 | Msa0024930:CDS |
| TAGATCAAATTATAATACAT+TGG | 0.565915 | 1_1:+47830060 | Msa0024930:three_prime_UTR |
| CCATGGATATGGTTATTCGC+CGG | 0.570411 | 1_1:+47829519 | Msa0024930:CDS |
| ACAAAACTCATTCCCTGCAA+GGG | 0.571624 | 1_1:-47830117 | None:intergenic |
| TGTTTATATTCCAGATCAGA+AGG | 0.574269 | 1_1:+47829745 | Msa0024930:CDS |
| AAGCCAAGCAGCAGAAACAT+GGG | 0.578219 | 1_1:+47829921 | Msa0024930:CDS |
| AAGAAAATAGCTCCAAAGGA+AGG | 0.585681 | 1_1:+47829163 | Msa0024930:CDS |
| TAAATCGAAAGGAGTGAAGA+GGG | 0.586006 | 1_1:+47829889 | Msa0024930:CDS |
| GAACGAACTTAAACAGCTGA+AGG | 0.586198 | 1_1:+47829231 | Msa0024930:CDS |
| TACATATGCACGGTCCACTC+CGG | 0.600615 | 1_1:-47829390 | None:intergenic |
| GGCGGTTCTGAATTCAGAGA+AGG | 0.605630 | 1_1:-47826243 | None:intergenic |
| CTTCTATCAGATCATAGACA+TGG | 0.608305 | 1_1:-47829096 | None:intergenic |
| AGACGACCTTTATCCTCGAG+TGG | 0.616955 | 1_1:+47830188 | Msa0024930:three_prime_UTR |
| CGAATAACCATATCCATGGA+AGG | 0.616987 | 1_1:-47829515 | None:intergenic |
| GGAAGCCATGAAAACTTCAA+GGG | 0.623284 | 1_1:+47829571 | Msa0024930:CDS |
| TTTGCCCTTATGGGTTGTGG+CGG | 0.625672 | 1_1:-47826261 | None:intergenic |
| GTGCGCCACCTTGATTGTGG+CGG | 0.646937 | 1_1:-47826199 | None:intergenic |
| TCATGATCAAAAGACAGGCA+GGG | 0.651541 | 1_1:-47830022 | None:intergenic |
| TCATGGAACCAAAACGAGTG+CGG | 0.653161 | 1_1:+47826423 | Msa0024930:CDS |
| AAACACCTTAGTTGGAGACA+GGG | 0.662381 | 1_1:-47829420 | None:intergenic |
| ACCCTAAAACACCAAAACGA+AGG | 0.664314 | 1_1:+47826122 | None:intergenic |
| TGTGTGCGCCACCTTGATTG+TGG | 0.674580 | 1_1:-47826202 | None:intergenic |
| ATTACTCACTAATCCACTCG+AGG | 0.681727 | 1_1:-47830201 | None:intergenic |
| GGGCAGTACATACATATGCA+CGG | 0.685032 | 1_1:-47829400 | None:intergenic |
| CAGAACCGCCACAATCAAGG+TGG | 0.730734 | 1_1:+47826194 | Msa0024930:CDS |
| AAAACTCATTCCCTGCAAGG+GGG | 0.736455 | 1_1:-47830115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATTTAATTAATAA+CGG | - | chr1_1:47827278-47827297 | None:intergenic | 0.0% |
| !!! | AATTTATAATATAATATTTT+AGG | - | chr1_1:47829987-47830006 | None:intergenic | 0.0% |
| !!! | GATTTTTTTCAATAAATAAA+TGG | - | chr1_1:47826345-47826364 | None:intergenic | 10.0% |
| !! | ATTGAGAAAAATAAAATAAA+AGG | - | chr1_1:47828836-47828855 | None:intergenic | 10.0% |
| !!! | AATTATTTTTTAGATTTAGA+GGG | - | chr1_1:47828910-47828929 | None:intergenic | 10.0% |
| !!! | TTTTTATGGTTTTATGATTA+AGG | + | chr1_1:47826684-47826703 | Msa0024930:intron | 15.0% |
| !! | AACTTATAGCTTATATAAAA+TGG | - | chr1_1:47826944-47826963 | None:intergenic | 15.0% |
| !! | TTTAGCTATAAAAATAGTTT+AGG | - | chr1_1:47827154-47827173 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTACCATTTTTA+TGG | + | chr1_1:47827346-47827365 | Msa0024930:intron | 15.0% |
| !! | TATTATTAAGTCATTACAAT+TGG | + | chr1_1:47827936-47827955 | Msa0024930:intron | 15.0% |
| !!! | TATGAAAATAAGTTGAAAAA+AGG | + | chr1_1:47828607-47828626 | Msa0024930:intron | 15.0% |
| !!! | ATTATTTTTTAGATTTAGAG+GGG | - | chr1_1:47828909-47828928 | None:intergenic | 15.0% |
| !!! | CAATTATTTTTTAGATTTAG+AGG | - | chr1_1:47828911-47828930 | None:intergenic | 15.0% |
| !! | TAGATCAAATTATAATACAT+TGG | + | chr1_1:47830060-47830079 | Msa0024930:three_prime_UTR | 15.0% |
| !! | ATTAATGAACGTATTAAAAT+AGG | - | chr1_1:47830239-47830258 | None:intergenic | 15.0% |
| !!! | ATGTTCTAATATATTTTGTT+TGG | - | chr1_1:47830297-47830316 | None:intergenic | 15.0% |
| !! | TATGATTAAGGAATTAGAAT+TGG | + | chr1_1:47826696-47826715 | Msa0024930:intron | 20.0% |
| !!! | GTACATGTTTTAAAAAAGTT+AGG | + | chr1_1:47826808-47826827 | Msa0024930:intron | 20.0% |
| !!! | TTTGAAAATGAGTTGAAAAA+AGG | + | chr1_1:47827240-47827259 | Msa0024930:intron | 20.0% |
| !!! | TTGAAAATGAGTTGAAAAAA+GGG | + | chr1_1:47827241-47827260 | Msa0024930:intron | 20.0% |
| !!! | ACATTTTTAGTGAATTACAT+AGG | + | chr1_1:47827319-47827338 | Msa0024930:intron | 20.0% |
| !! | TTAAAACAAGTCCATAAAAA+TGG | - | chr1_1:47827360-47827379 | None:intergenic | 20.0% |
| !! | ACTTATAGCTTATATGAAAA+TGG | - | chr1_1:47827561-47827580 | None:intergenic | 20.0% |
| !! | CTATTATTCAGACATTTATT+TGG | + | chr1_1:47827871-47827890 | Msa0024930:intron | 20.0% |
| !! | TTAACAAAGGTTCTTAAAAA+TGG | - | chr1_1:47828162-47828181 | None:intergenic | 20.0% |
| !! | AACCTTTGTTAAAATAAGTT+AGG | + | chr1_1:47828170-47828189 | Msa0024930:intron | 20.0% |
| !!! | TTCCTAACTTATTTTAACAA+AGG | - | chr1_1:47828175-47828194 | None:intergenic | 20.0% |
| !!! | AACTTTGTTTTTAAGCTATT+TGG | + | chr1_1:47828199-47828218 | Msa0024930:intron | 20.0% |
| !!! | AATGTTTTTATAAGCTATGT+TGG | + | chr1_1:47828578-47828597 | Msa0024930:intron | 20.0% |
| !!! | TTATTTTTTAGATTTAGAGG+GGG | - | chr1_1:47828908-47828927 | None:intergenic | 20.0% |
| !!! | TCGATTTTAATTGTTTAGAT+TGG | + | chr1_1:47829848-47829867 | Msa0024930:intron | 20.0% |
| !! | TATAATTTGATCTACTACAA+TGG | - | chr1_1:47830054-47830073 | None:intergenic | 20.0% |
| !! | ACATTATGCTTACAATTAAA+TGG | - | chr1_1:47830145-47830164 | None:intergenic | 20.0% |
| !! | TTCATTAATTTATGTTCAGA+TGG | + | chr1_1:47830250-47830269 | Msa0024930:three_prime_UTR | 20.0% |
| !! | TCATTAATTTATGTTCAGAT+GGG | + | chr1_1:47830251-47830270 | Msa0024930:three_prime_UTR | 20.0% |
| !! | ATGTTCTGATATACTTTATA+AGG | - | chr1_1:47830323-47830342 | None:intergenic | 20.0% |
| ! | ATGAAAAGATGAAGTAATGA+TGG | - | chr1_1:47826321-47826340 | None:intergenic | 25.0% |
| ! | TGTAACAAAAACATGAATCA+TGG | - | chr1_1:47826373-47826392 | None:intergenic | 25.0% |
| !!! | ATGATTCATGTTTTTGTTAC+AGG | + | chr1_1:47826372-47826391 | Msa0024930:intron | 25.0% |
| ! | TCAGATTTATCATTTGAAGA+AGG | + | chr1_1:47826465-47826484 | Msa0024930:CDS | 25.0% |
| !!! | AATATTAAACCTTTTGAAGC+TGG | + | chr1_1:47826520-47826539 | Msa0024930:CDS | 25.0% |
| !!! | TGAGTTTGTTTTTAAGGTTT+TGG | + | chr1_1:47826631-47826650 | Msa0024930:intron | 25.0% |
| !!! | TTTGCTTTGCTTTGTTTTTA+TGG | + | chr1_1:47826670-47826689 | Msa0024930:intron | 25.0% |
| !!! | TTAAGTTGATAATCCAAACA+GGG | - | chr1_1:47826853-47826872 | None:intergenic | 25.0% |
| !!! | ATTAAGTTGATAATCCAAAC+AGG | - | chr1_1:47826854-47826873 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATTAGCTATTT+TGG | + | chr1_1:47826961-47826980 | Msa0024930:intron | 25.0% |
| ! | ATTGCTAGTAGATAAGTTTA+AGG | + | chr1_1:47827059-47827078 | Msa0024930:intron | 25.0% |
| ! | TTGCTAGTAGATAAGTTTAA+GGG | + | chr1_1:47827060-47827079 | Msa0024930:intron | 25.0% |
| !!! | GTTGTTTTTATAAGCTACAT+TGG | + | chr1_1:47827212-47827231 | Msa0024930:intron | 25.0% |
| !!! | TGGACTTGTTTTAAAAAAGT+TGG | + | chr1_1:47827366-47827385 | Msa0024930:intron | 25.0% |
| !!! | GGACTTGTTTTAAAAAAGTT+GGG | + | chr1_1:47827367-47827386 | Msa0024930:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr1_1:47827455-47827474 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1_1:47827456-47827475 | None:intergenic | 25.0% |
| !!! | GTTCTTTCTAAAATAGCTAA+TGG | - | chr1_1:47827589-47827608 | None:intergenic | 25.0% |
| ! | AATAGAAAACAACAAGTTTC+GGG | - | chr1_1:47827850-47827869 | None:intergenic | 25.0% |
| ! | CAATAGAAAACAACAAGTTT+CGG | - | chr1_1:47827851-47827870 | None:intergenic | 25.0% |
| ! | TTATGTGACAACTTCATTAT+TGG | + | chr1_1:47828022-47828041 | Msa0024930:intron | 25.0% |
| ! | TCATTATTGGTCAAAAACAA+TGG | + | chr1_1:47828035-47828054 | Msa0024930:intron | 25.0% |
| ! | TTCTTAAAAATGGTGAAAGT+AGG | - | chr1_1:47828152-47828171 | None:intergenic | 25.0% |
| !! | CCTATTGACATATATTTTGT+GGG | - | chr1_1:47828679-47828698 | None:intergenic | 25.0% |
| !! | ACCTATTGACATATATTTTG+TGG | - | chr1_1:47828680-47828699 | None:intergenic | 25.0% |
| ! | TAGTTAGCAAATCTCAATAT+AGG | + | chr1_1:47828877-47828896 | Msa0024930:intron | 25.0% |
| !!! | AACTCAATTATTTTTCAGAG+GGG | - | chr1_1:47828936-47828955 | None:intergenic | 25.0% |
| !!! | GAACTCAATTATTTTTCAGA+GGG | - | chr1_1:47828937-47828956 | None:intergenic | 25.0% |
| !!! | GTTGGTATTGAAAATTTTAG+AGG | + | chr1_1:47829118-47829137 | Msa0024930:CDS | 25.0% |
| !!! | TATTGAAAATTTTAGAGGCA+TGG | + | chr1_1:47829123-47829142 | Msa0024930:CDS | 25.0% |
| !!! | AATTGGTTTACCTTTTTCTT+TGG | - | chr1_1:47829602-47829621 | None:intergenic | 25.0% |
| ! | ACTTGAAAGATTTAGAGAAT+TGG | - | chr1_1:47829619-47829638 | None:intergenic | 25.0% |
| ! | AATTGTTTAGATTGGAGAAA+TGG | + | chr1_1:47829856-47829875 | Msa0024930:intron | 25.0% |
| !! | TTTTTGTTACAGGTTGAAAC+TGG | + | chr1_1:47826382-47826401 | Msa0024930:intron | 30.0% |
| !! | TTTTGTTACAGGTTGAAACT+GGG | + | chr1_1:47826383-47826402 | Msa0024930:intron | 30.0% |
| !!! | CGTTGTTGAGTTTGTTTTTA+AGG | + | chr1_1:47826625-47826644 | Msa0024930:intron | 30.0% |
| !!! | GTTTGTTTTTAAGGTTTTGG+TGG | + | chr1_1:47826634-47826653 | Msa0024930:intron | 30.0% |
| ! | TAGGAATTTGAAACCAAACT+AGG | + | chr1_1:47826827-47826846 | Msa0024930:intron | 30.0% |
| CATAAGCTGTTTATTCAAAC+CGG | - | chr1_1:47827086-47827105 | None:intergenic | 30.0% | |
| GTTTGTCATGAAACTGATAT+AGG | + | chr1_1:47827429-47827448 | Msa0024930:intron | 30.0% | |
| !! | GCTGTTTTCACAAGTTATTA+TGG | + | chr1_1:47827684-47827703 | Msa0024930:intron | 30.0% |
| !! | TAGCACTGATAAGACTATTT+GGG | - | chr1_1:47827749-47827768 | None:intergenic | 30.0% |
| !! | TTAGCACTGATAAGACTATT+TGG | - | chr1_1:47827750-47827769 | None:intergenic | 30.0% |
| AAAGTAGGTAAAAACCTTTG+TGG | - | chr1_1:47828137-47828156 | None:intergenic | 30.0% | |
| GTTTGCCATTAAACCAAATT+AGG | + | chr1_1:47828226-47828245 | Msa0024930:intron | 30.0% | |
| ! | TTAAGTTGTTCACCCAAATA+GGG | - | chr1_1:47828252-47828271 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTTCACCCAAAT+AGG | - | chr1_1:47828253-47828272 | None:intergenic | 30.0% |
| ! | TTATGAGCTATAAGCTGTTT+TGG | + | chr1_1:47828332-47828351 | Msa0024930:intron | 30.0% |
| AGACACTTAAACTTATCTAC+TGG | - | chr1_1:47828448-47828467 | None:intergenic | 30.0% | |
| GATAAGTTTAAGTGTCTGTT+TGG | + | chr1_1:47828451-47828470 | Msa0024930:intron | 30.0% | |
| ! | TATATTTTGTGGGACTGTTT+AGG | - | chr1_1:47828669-47828688 | None:intergenic | 30.0% |
| CCCACAAAATATATGTCAAT+AGG | + | chr1_1:47828676-47828695 | Msa0024930:intron | 30.0% | |
| TGAACTGCAATCATAACTAA+GGG | - | chr1_1:47828754-47828773 | None:intergenic | 30.0% | |
| TTAGTTATGATTGCAGTTCA+GGG | + | chr1_1:47828754-47828773 | Msa0024930:intron | 30.0% | |
| !! | GGAACTCAATTATTTTTCAG+AGG | - | chr1_1:47828938-47828957 | None:intergenic | 30.0% |
| GCTCTTACTATGTATGAATA+AGG | - | chr1_1:47828959-47828978 | None:intergenic | 30.0% | |
| TAAGAGCTCCAAATATTACA+TGG | + | chr1_1:47828972-47828991 | Msa0024930:intron | 30.0% | |
| ATCGCTTTCCATGTAATATT+TGG | - | chr1_1:47828983-47829002 | None:intergenic | 30.0% | |
| AGATCCATACTGCAAAATAT+AGG | - | chr1_1:47829026-47829045 | None:intergenic | 30.0% | |
| TGATAAGAAAATAGCTCCAA+AGG | + | chr1_1:47829159-47829178 | Msa0024930:CDS | 30.0% | |
| !! | GTTTTACTTGATCTTTTTCG+CGG | + | chr1_1:47829256-47829275 | Msa0024930:CDS | 30.0% |
| ! | TCTCTTTCACATTCTTTTGT+CGG | + | chr1_1:47829303-47829322 | Msa0024930:intron | 30.0% |
| !! | GTACTTGTTCTGTTTCTAAT+AGG | + | chr1_1:47829679-47829698 | Msa0024930:intron | 30.0% |
| ATAGGAGAAGAATGTCAAAA+AGG | + | chr1_1:47829697-47829716 | Msa0024930:intron | 30.0% | |
| TTTCCAATCTTTCCTTGTAA+GGG | - | chr1_1:47829725-47829744 | None:intergenic | 30.0% | |
| ATTTCCAATCTTTCCTTGTA+AGG | - | chr1_1:47829726-47829745 | None:intergenic | 30.0% | |
| TGTTTATATTCCAGATCAGA+AGG | + | chr1_1:47829745-47829764 | Msa0024930:CDS | 30.0% | |
| ! | GTTTTGCCTAATAAATCGAA+AGG | + | chr1_1:47829878-47829897 | Msa0024930:CDS | 30.0% |
| TTCACTCCTTTCGATTTATT+AGG | - | chr1_1:47829887-47829906 | None:intergenic | 30.0% | |
| ! | CAAAGAAAAGACCTTCGTTT+TGG | - | chr1_1:47826136-47826155 | None:intergenic | 35.0% |
| ! | GTAATGATGGTTACGAGTTT+TGG | - | chr1_1:47826308-47826327 | None:intergenic | 35.0% |
| ! | AAGAAAACGTTGTTGCTTCA+TGG | + | chr1_1:47826406-47826425 | Msa0024930:CDS | 35.0% |
| !!! | ATTAAACCTTTTGAAGCTGG+TGG | + | chr1_1:47826523-47826542 | Msa0024930:CDS | 35.0% |
| CAATTCACTTACACAACAAG+AGG | - | chr1_1:47826760-47826779 | None:intergenic | 35.0% | |
| GTTGTGTAAGTGAATTGCAT+AGG | + | chr1_1:47826763-47826782 | Msa0024930:intron | 35.0% | |
| TAGTAGATAAGTTTAAGGGC+CGG | + | chr1_1:47827064-47827083 | Msa0024930:intron | 35.0% | |
| AGTCTATCCAAATAAGCTCT+TGG | + | chr1_1:47827792-47827811 | Msa0024930:intron | 35.0% | |
| ATCACAACCAAGAGCTTATT+TGG | - | chr1_1:47827802-47827821 | None:intergenic | 35.0% | |
| TTGGTTGTGATAGTAGATCA+GGG | + | chr1_1:47827811-47827830 | Msa0024930:intron | 35.0% | |
| ! | TAGGGCCTAATTTGGTTTAA+TGG | - | chr1_1:47828234-47828253 | None:intergenic | 35.0% |
| AAACCAAATTAGGCCCTATT+TGG | + | chr1_1:47828236-47828255 | Msa0024930:intron | 35.0% | |
| AACCAAATTAGGCCCTATTT+GGG | + | chr1_1:47828237-47828256 | Msa0024930:intron | 35.0% | |
| !!! | AAGCTGTTTTGGAAAGCTTA+AGG | + | chr1_1:47828343-47828362 | Msa0024930:intron | 35.0% |
| CTGAACTGCAATCATAACTA+AGG | - | chr1_1:47828755-47828774 | None:intergenic | 35.0% | |
| CTTAGTTATGATTGCAGTTC+AGG | + | chr1_1:47828753-47828772 | Msa0024930:intron | 35.0% | |
| TAGTTATGATTGCAGTTCAG+GGG | + | chr1_1:47828755-47828774 | Msa0024930:intron | 35.0% | |
| ! | GTTGCCTATATTTTGCAGTA+TGG | + | chr1_1:47829019-47829038 | Msa0024930:intron | 35.0% |
| AGACCTAATAACCTTGTTCT+CGG | + | chr1_1:47829058-47829077 | Msa0024930:CDS | 35.0% | |
| CTTCTATCAGATCATAGACA+TGG | - | chr1_1:47829099-47829118 | None:intergenic | 35.0% | |
| GTCTATGATCTGATAGAAGT+TGG | + | chr1_1:47829100-47829119 | Msa0024930:CDS | 35.0% | |
| AAGAAAATAGCTCCAAAGGA+AGG | + | chr1_1:47829163-47829182 | Msa0024930:CDS | 35.0% | |
| ! | AAGCCTTTTATGGCTTTCAT+TGG | + | chr1_1:47829190-47829209 | Msa0024930:CDS | 35.0% |
| ! | AGCCTTTTATGGCTTTCATT+GGG | + | chr1_1:47829191-47829210 | Msa0024930:CDS | 35.0% |
| AAGTGATGCATATGATTCAC+AGG | + | chr1_1:47829346-47829365 | Msa0024930:intron | 35.0% | |
| GTGGAGAATTTAAATCTTGC+CGG | + | chr1_1:47829371-47829390 | Msa0024930:CDS | 35.0% | |
| TGTGTGAAAAACACCTTAGT+TGG | - | chr1_1:47829431-47829450 | None:intergenic | 35.0% | |
| CTTCTACCAATTCCATTCTT+GGG | - | chr1_1:47829490-47829509 | None:intergenic | 35.0% | |
| ACTTCTACCAATTCCATTCT+TGG | - | chr1_1:47829491-47829510 | None:intergenic | 35.0% | |
| AGAATGGAATTGGTAGAAGT+TGG | + | chr1_1:47829491-47829510 | Msa0024930:CDS | 35.0% | |
| TTCATCACACTTTCATTAGG+AGG | - | chr1_1:47829551-47829570 | None:intergenic | 35.0% | |
| ! | TCCTAATGAAAGTGTGATGA+AGG | + | chr1_1:47829550-47829569 | Msa0024930:CDS | 35.0% |
| TCCTTCATCACACTTTCATT+AGG | - | chr1_1:47829554-47829573 | None:intergenic | 35.0% | |
| ATAAATCGAAAGGAGTGAAG+AGG | + | chr1_1:47829888-47829907 | Msa0024930:CDS | 35.0% | |
| TAAATCGAAAGGAGTGAAGA+GGG | + | chr1_1:47829889-47829908 | Msa0024930:CDS | 35.0% | |
| TTCAGATGGGTATAGTTTCA+AGG | + | chr1_1:47830264-47830283 | Msa0024930:three_prime_UTR | 35.0% | |
| TTGTGCGAAAAACTCCAAAG+AGG | - | chr1_1:47826554-47826573 | None:intergenic | 40.0% | |
| AACTGATTGCAGTCTCTTTC+TGG | + | chr1_1:47826576-47826595 | Msa0024930:CDS | 40.0% | |
| AACAAGCTGAGAACAGCTTA+TGG | + | chr1_1:47826996-47827015 | Msa0024930:intron | 40.0% | |
| AAACTGATATAGGCCCTGTT+TGG | + | chr1_1:47827439-47827458 | Msa0024930:intron | 40.0% | |
| CTTGGTTGTGATAGTAGATC+AGG | + | chr1_1:47827810-47827829 | Msa0024930:intron | 40.0% | |
| ! | GTGTGAGTATTGTCACAAAG+TGG | + | chr1_1:47828059-47828078 | Msa0024930:intron | 40.0% |
| GTTGTGTAAGTGAACCACAA+AGG | + | chr1_1:47828120-47828139 | Msa0024930:intron | 40.0% | |
| AGTCAATCCAAACAGACTCT+CGG | + | chr1_1:47828711-47828730 | Msa0024930:intron | 40.0% | |
| ATGATTACCGAGAGTCTGTT+TGG | - | chr1_1:47828721-47828740 | None:intergenic | 40.0% | |
| GACCTAATAACCTTGTTCTC+GGG | + | chr1_1:47829059-47829078 | Msa0024930:CDS | 40.0% | |
| ! | AAAGGCTTTGATCCTTCCTT+TGG | - | chr1_1:47829178-47829197 | None:intergenic | 40.0% |
| ! | GGAAGGATCAAAGCCTTTTA+TGG | + | chr1_1:47829180-47829199 | Msa0024930:CDS | 40.0% |
| ! | GCCTTTTATGGCTTTCATTG+GGG | + | chr1_1:47829192-47829211 | Msa0024930:CDS | 40.0% |
| TCCCCAATGAAAGCCATAAA+AGG | - | chr1_1:47829196-47829215 | None:intergenic | 40.0% | |
| TTTATGGCTTTCATTGGGGA+AGG | + | chr1_1:47829196-47829215 | Msa0024930:CDS | 40.0% | |
| GAACGAACTTAAACAGCTGA+AGG | + | chr1_1:47829231-47829250 | Msa0024930:CDS | 40.0% | |
| TGCATATGATTCACAGGTTG+TGG | + | chr1_1:47829352-47829371 | Msa0024930:intron | 40.0% | |
| GAATTTAAATCTTGCCGGAG+TGG | + | chr1_1:47829376-47829395 | Msa0024930:CDS | 40.0% | |
| AAACACCTTAGTTGGAGACA+GGG | - | chr1_1:47829423-47829442 | None:intergenic | 40.0% | |
| AAAACACCTTAGTTGGAGAC+AGG | - | chr1_1:47829424-47829443 | None:intergenic | 40.0% | |
| ! | TTTTCACACACTGTGCATTG+CGG | + | chr1_1:47829441-47829460 | Msa0024930:CDS | 40.0% |
| GCATTGCGGTTGAAAAAATC+TGG | + | chr1_1:47829455-47829474 | Msa0024930:CDS | 40.0% | |
| AGTTGTCCCAAGAATGGAAT+TGG | + | chr1_1:47829481-47829500 | Msa0024930:CDS | 40.0% | |
| CGAATAACCATATCCATGGA+AGG | - | chr1_1:47829518-47829537 | None:intergenic | 40.0% | |
| AGGAAGCCATGAAAACTTCA+AGG | + | chr1_1:47829570-47829589 | Msa0024930:CDS | 40.0% | |
| GGAAGCCATGAAAACTTCAA+GGG | + | chr1_1:47829571-47829590 | Msa0024930:CDS | 40.0% | |
| ! | CTTGTCCCTTGAAGTTTTCA+TGG | - | chr1_1:47829579-47829598 | None:intergenic | 40.0% |
| AAGGGACAAGCCAAAGAAAA+AGG | + | chr1_1:47829589-47829608 | Msa0024930:CDS | 40.0% | |
| GTCAAAAAGGATCCCTTACA+AGG | + | chr1_1:47829710-47829729 | Msa0024930:CDS | 40.0% | |
| GATCCCTTACAAGGAAAGAT+TGG | + | chr1_1:47829719-47829738 | Msa0024930:CDS | 40.0% | |
| ATTCCAGATCAGAAGGTAAG+AGG | + | chr1_1:47829752-47829771 | Msa0024930:intron | 40.0% | |
| TTCCAGATCAGAAGGTAAGA+GGG | + | chr1_1:47829753-47829772 | Msa0024930:intron | 40.0% | |
| TCATGATCAAAAGACAGGCA+GGG | - | chr1_1:47830025-47830044 | None:intergenic | 40.0% | |
| TTCATGATCAAAAGACAGGC+AGG | - | chr1_1:47830026-47830045 | None:intergenic | 40.0% | |
| TCGCTTCATGATCAAAAGAC+AGG | - | chr1_1:47830030-47830049 | None:intergenic | 40.0% | |
| ACAAAACTCATTCCCTGCAA+GGG | - | chr1_1:47830120-47830139 | None:intergenic | 40.0% | |
| AACAAAACTCATTCCCTGCA+AGG | - | chr1_1:47830121-47830140 | None:intergenic | 40.0% | |
| GGATAAAGGTCGTCTAAATC+AGG | - | chr1_1:47830183-47830202 | None:intergenic | 40.0% | |
| ACTAATCCACTCGAGGATAA+AGG | - | chr1_1:47830197-47830216 | None:intergenic | 40.0% | |
| ATTACTCACTAATCCACTCG+AGG | - | chr1_1:47830204-47830223 | None:intergenic | 40.0% | |
| CTTTGCTGCCTTCTTCACAA+TGG | + | chr1_1:47826151-47826170 | Msa0024930:exon | 45.0% | |
| ! | TCTGAAACTGTGCTGTGTGA+GGG | - | chr1_1:47826178-47826197 | None:intergenic | 45.0% |
| !! | TTCTGAAACTGTGCTGTGTG+AGG | - | chr1_1:47826179-47826198 | None:intergenic | 45.0% |
| TTTCAGAACCGCCACAATCA+AGG | + | chr1_1:47826191-47826210 | Msa0024930:CDS | 45.0% | |
| !!! | TTTTGGAGCACGCTTCTTGA+GGG | - | chr1_1:47826291-47826310 | None:intergenic | 45.0% |
| TCATGGAACCAAAACGAGTG+CGG | + | chr1_1:47826423-47826442 | Msa0024930:CDS | 45.0% | |
| ! | GTTCAAAACCGCACTCGTTT+TGG | - | chr1_1:47826434-47826453 | None:intergenic | 45.0% |
| GTTTCACCACCAGCTTCAAA+AGG | - | chr1_1:47826532-47826551 | None:intergenic | 45.0% | |
| AAACCAAACTAGGCCCTGTT+TGG | + | chr1_1:47826837-47826856 | Msa0024930:intron | 45.0% | |
| AATCCAAACAGGGCCTAGTT+TGG | - | chr1_1:47826843-47826862 | None:intergenic | 45.0% | |
| TTCCATAAGCTCTCCTTAGC+AGG | + | chr1_1:47827023-47827042 | Msa0024930:intron | 45.0% | |
| TCCATAAGCTCTCCTTAGCA+GGG | + | chr1_1:47827024-47827043 | Msa0024930:intron | 45.0% | |
| CACCCAAATAGGGCCTAATT+TGG | - | chr1_1:47828242-47828261 | None:intergenic | 45.0% | |
| AAGCACTTGTGACACTGCTT+GGG | - | chr1_1:47828422-47828441 | None:intergenic | 45.0% | |
| TAAGCACTTGTGACACTGCT+TGG | - | chr1_1:47828423-47828442 | None:intergenic | 45.0% | |
| TACCCGAAACTTGTGATGCT+AGG | + | chr1_1:47828810-47828829 | Msa0024930:intron | 45.0% | |
| AGGCCTAGCATCACAAGTTT+CGG | - | chr1_1:47828816-47828835 | None:intergenic | 45.0% | |
| CTCCCGAGAACAAGGTTATT+AGG | - | chr1_1:47829064-47829083 | None:intergenic | 45.0% | |
| CATACATTCTCCCGAGAACA+AGG | - | chr1_1:47829072-47829091 | None:intergenic | 45.0% | |
| !! | ACTTGATCTTTTTCGCGGAG+AGG | + | chr1_1:47829261-47829280 | Msa0024930:CDS | 45.0% |
| GGGCAGTACATACATATGCA+CGG | - | chr1_1:47829403-47829422 | None:intergenic | 45.0% | |
| AGTTGGTCCTTCCATGGATA+TGG | + | chr1_1:47829508-47829527 | Msa0024930:CDS | 45.0% | |
| CCATGGATATGGTTATTCGC+CGG | + | chr1_1:47829519-47829538 | Msa0024930:CDS | 45.0% | |
| TTTCATTAGGAGGACGATGC+CGG | - | chr1_1:47829541-47829560 | None:intergenic | 45.0% | |
| AAGCCAAGCAGCAGAAACAT+GGG | + | chr1_1:47829921-47829940 | Msa0024930:CDS | 45.0% | |
| GCATGCATCGAAAAAGCAGA+AGG | + | chr1_1:47829952-47829971 | Msa0024930:CDS | 45.0% | |
| ATTCTAGATTTCCCCCTTGC+AGG | + | chr1_1:47830104-47830123 | Msa0024930:three_prime_UTR | 45.0% | |
| TTCTAGATTTCCCCCTTGCA+GGG | + | chr1_1:47830105-47830124 | Msa0024930:three_prime_UTR | 45.0% | |
| AAAACTCATTCCCTGCAAGG+GGG | - | chr1_1:47830118-47830137 | None:intergenic | 45.0% | |
| CAAAACTCATTCCCTGCAAG+GGG | - | chr1_1:47830119-47830138 | None:intergenic | 45.0% | |
| CTGAAACTGTGCTGTGTGAG+GGG | - | chr1_1:47826177-47826196 | None:intergenic | 50.0% | |
| !! | GGCGGTTCTGAATTCAGAGA+AGG | - | chr1_1:47826246-47826265 | None:intergenic | 50.0% |
| AGAACCGCCACAACCCATAA+GGG | + | chr1_1:47826257-47826276 | Msa0024930:CDS | 50.0% | |
| ! | TTTGCCCTTATGGGTTGTGG+CGG | - | chr1_1:47826264-47826283 | None:intergenic | 50.0% |
| ! | GAGTTTGCCCTTATGGGTTG+TGG | - | chr1_1:47826267-47826286 | None:intergenic | 50.0% |
| !!! | GTTTTGGAGCACGCTTCTTG+AGG | - | chr1_1:47826292-47826311 | None:intergenic | 50.0% |
| ! | AGCTGGTGGTGAAACCTCTT+TGG | + | chr1_1:47826537-47826556 | Msa0024930:CDS | 50.0% |
| ACCCTGCTAAGGAGAGCTTA+TGG | - | chr1_1:47827028-47827047 | None:intergenic | 50.0% | |
| ACACTGCTTGGGAGAGCTTA+TGG | - | chr1_1:47828411-47828430 | None:intergenic | 50.0% | |
| GGCCTAGCATCACAAGTTTC+GGG | - | chr1_1:47828815-47828834 | None:intergenic | 50.0% | |
| ! | CACATTCTTTTGTCGGCAGC+TGG | + | chr1_1:47829310-47829329 | Msa0024930:intron | 50.0% |
| TACATATGCACGGTCCACTC+CGG | - | chr1_1:47829393-47829412 | None:intergenic | 50.0% | |
| TACTGCCCTGTCTCCAACTA+AGG | + | chr1_1:47829415-47829434 | Msa0024930:CDS | 50.0% | |
| TGGCACAGTTGTCCCAAGAA+TGG | + | chr1_1:47829475-47829494 | Msa0024930:CDS | 50.0% | |
| ! | GGTAGAAGTTGGTCCTTCCA+TGG | + | chr1_1:47829502-47829521 | Msa0024930:CDS | 50.0% |
| CCGGCGAATAACCATATCCA+TGG | - | chr1_1:47829522-47829541 | None:intergenic | 50.0% | |
| GTCCCTCTTACCTTCTGATC+TGG | - | chr1_1:47829758-47829777 | None:intergenic | 50.0% | |
| ! | GTTTCTGCTGCTTGGCTTCT+CGG | - | chr1_1:47829919-47829938 | None:intergenic | 50.0% |
| GAAGCCAAGCAGCAGAAACA+TGG | + | chr1_1:47829920-47829939 | Msa0024930:CDS | 50.0% | |
| ! | ACTCCCATGTTTCTGCTGCT+TGG | - | chr1_1:47829927-47829946 | None:intergenic | 50.0% |
| GACAGGCAGGGAAAGACAAT+AGG | - | chr1_1:47830013-47830032 | None:intergenic | 50.0% | |
| AGACGACCTTTATCCTCGAG+TGG | + | chr1_1:47830188-47830207 | Msa0024930:three_prime_UTR | 50.0% | |
| GTGAGGGGCCATTGTGAAGA+AGG | - | chr1_1:47826162-47826181 | None:intergenic | 55.0% | |
| CAGAACCGCCACAATCAAGG+TGG | + | chr1_1:47826194-47826213 | Msa0024930:CDS | 55.0% | |
| TGTGTGCGCCACCTTGATTG+TGG | - | chr1_1:47826205-47826224 | None:intergenic | 55.0% | |
| CAGAACCGCCACAACCCATA+AGG | + | chr1_1:47826256-47826275 | Msa0024930:CDS | 55.0% | |
| GAGGGCGAGTTTGCCCTTAT+GGG | - | chr1_1:47826273-47826292 | None:intergenic | 55.0% | |
| TGAGGGCGAGTTTGCCCTTA+TGG | - | chr1_1:47826274-47826293 | None:intergenic | 55.0% | |
| AAGCACTCGTCACCCTGCTA+AGG | - | chr1_1:47827039-47827058 | None:intergenic | 55.0% | |
| GTGCGCCACCTTGATTGTGG+CGG | - | chr1_1:47826202-47826221 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47826130 | 47830347 | 47826130 | ID=Msa0024930;Name=Msa0024930 |
| chr1_1 | mRNA | 47826130 | 47830347 | 47826130 | ID=Msa0024930-mRNA-1;Parent=Msa0024930;Name=Msa0024930-mRNA-1;_AED=0.07;_eAED=0.07;_QI=40|1|1|1|1|1|6|359|341 |
| chr1_1 | exon | 47826130 | 47826313 | 47826130 | ID=Msa0024930-mRNA-1:exon:13595;Parent=Msa0024930-mRNA-1 |
| chr1_1 | exon | 47826394 | 47826597 | 47826394 | ID=Msa0024930-mRNA-1:exon:13596;Parent=Msa0024930-mRNA-1 |
| chr1_1 | exon | 47829037 | 47829282 | 47829037 | ID=Msa0024930-mRNA-1:exon:13597;Parent=Msa0024930-mRNA-1 |
| chr1_1 | exon | 47829368 | 47829610 | 47829368 | ID=Msa0024930-mRNA-1:exon:13598;Parent=Msa0024930-mRNA-1 |
| chr1_1 | exon | 47829701 | 47829766 | 47829701 | ID=Msa0024930-mRNA-1:exon:13599;Parent=Msa0024930-mRNA-1 |
| chr1_1 | exon | 47829866 | 47830347 | 47829866 | ID=Msa0024930-mRNA-1:exon:13600;Parent=Msa0024930-mRNA-1 |
| chr1_1 | five_prime_UTR | 47826130 | 47826169 | 47826130 | ID=Msa0024930-mRNA-1:five_prime_utr;Parent=Msa0024930-mRNA-1 |
| chr1_1 | CDS | 47826170 | 47826313 | 47826170 | ID=Msa0024930-mRNA-1:cds;Parent=Msa0024930-mRNA-1 |
| chr1_1 | CDS | 47826394 | 47826597 | 47826394 | ID=Msa0024930-mRNA-1:cds;Parent=Msa0024930-mRNA-1 |
| chr1_1 | CDS | 47829037 | 47829282 | 47829037 | ID=Msa0024930-mRNA-1:cds;Parent=Msa0024930-mRNA-1 |
| chr1_1 | CDS | 47829368 | 47829610 | 47829368 | ID=Msa0024930-mRNA-1:cds;Parent=Msa0024930-mRNA-1 |
| chr1_1 | CDS | 47829701 | 47829766 | 47829701 | ID=Msa0024930-mRNA-1:cds;Parent=Msa0024930-mRNA-1 |
| chr1_1 | CDS | 47829866 | 47829988 | 47829866 | ID=Msa0024930-mRNA-1:cds;Parent=Msa0024930-mRNA-1 |
| chr1_1 | three_prime_UTR | 47829989 | 47830347 | 47829989 | ID=Msa0024930-mRNA-1:three_prime_utr;Parent=Msa0024930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
