AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0939870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0939870 MtrunA17_Chr6g0455511 99.600 250 1 0 1 250 1 250 0.0 517
Msa0939870 MtrunA17_Chr7g0220111 87.302 252 27 4 1 250 1 249 2.26e-160 444
Msa0939870 MtrunA17_Chr3g0122251 65.759 257 68 6 1 249 1 245 1.91e-110 318
Msa0939870 MtrunA17_Chr5g0420091 63.470 219 75 2 1 218 1 215 1.98e-97 283
Msa0939870 MtrunA17_Chr4g0061671 66.667 174 57 1 1 174 1 173 2.72e-79 236
Msa0939870 MtrunA17_Chr8g0351051 50.000 256 117 7 1 250 1 251 6.24e-73 223
Msa0939870 MtrunA17_Chr4g0061691 60.355 169 66 1 1 168 1 169 6.23e-63 196
Msa0939870 MtrunA17_Chr8g0377551 55.729 192 67 7 63 249 1 179 1.33e-58 184
Msa0939870 MtrunA17_Chr8g0366231 45.374 227 114 3 1 226 1 218 7.04e-57 181
Msa0939870 MtrunA17_Chr6g0474371 50.549 182 88 1 1 180 1 182 1.50e-54 174
Msa0939870 MtrunA17_Chr7g0220121 39.483 271 123 7 1 250 1 251 4.55e-51 167
Msa0939870 MtrunA17_Chr1g0204111 49.133 173 85 2 1 171 17 188 1.37e-50 166
Msa0939870 MtrunA17_Chr5g0420081 49.425 174 87 1 1 173 1 174 3.22e-50 164
Msa0939870 MtrunA17_Chr4g0057151 50.000 168 82 2 1 167 1 167 3.46e-46 153
Msa0939870 MtrunA17_Chr3g0077501 46.667 180 84 4 1 174 1 174 1.04e-44 149
Msa0939870 MtrunA17_Chr3g0097101 41.071 224 118 5 1 220 16 229 1.82e-44 150
Msa0939870 MtrunA17_Chr8g0380021 46.629 178 85 4 1 173 17 189 4.35e-44 149
Msa0939870 MtrunA17_Chr8g0351031 42.995 207 107 5 1 202 1 201 1.12e-43 147
Msa0939870 MtrunA17_Chr2g0284911 44.828 174 94 2 1 173 16 188 2.82e-43 147
Msa0939870 MtrunA17_Chr7g0246431 48.521 169 85 2 1 168 1 168 7.98e-43 144
Msa0939870 MtrunA17_Chr2g0279821 41.489 188 109 1 1 188 1 187 1.30e-42 145
Msa0939870 MtrunA17_Chr8g0351041 46.667 165 79 4 1 160 1 161 4.34e-40 136
Msa0939870 MtrunA17_Chr5g0411691 35.398 226 131 3 1 213 1 224 4.48e-39 135
Msa0939870 MtrunA17_Chr4g0049541 37.850 214 122 3 1 205 1 212 1.09e-38 134
Msa0939870 MtrunA17_Chr8g0377561 98.361 61 1 0 1 61 1 61 8.10e-37 125
Msa0939870 MtrunA17_Chr4g0018421 43.195 169 94 2 1 167 1 169 3.04e-36 127
Msa0939870 MtrunA17_Chr4g0020221 46.067 178 90 3 1 174 1 176 1.87e-34 124
Msa0939870 MtrunA17_Chr1g0164791 41.954 174 94 4 1 168 1 173 2.23e-34 123
Msa0939870 MtrunA17_Chr5g0427401 36.364 220 125 6 1 216 1 209 3.36e-34 122
Msa0939870 MtrunA17_Chr7g0246381 90.323 62 6 0 1 62 1 62 1.66e-33 116
Msa0939870 MtrunA17_Chr3g0125241 45.205 146 75 2 1 145 26 167 1.93e-33 120
Msa0939870 MtrunA17_Chr5g0412271 43.407 182 96 4 1 179 1 178 2.55e-33 120
Msa0939870 MtrunA17_Chr2g0308251 69.333 75 23 0 1 75 1 75 2.61e-32 113
Msa0939870 MtrunA17_Chr5g0412461 43.529 170 90 3 1 167 1 167 1.17e-31 116
Msa0939870 MtrunA17_Chr5g0404951 36.190 210 116 6 1 202 1 200 8.24e-29 108
Msa0939870 MtrunA17_Chr1g0159661 38.547 179 91 4 1 173 1 166 9.45e-29 107
Msa0939870 MtrunA17_Chr3g0142191 41.139 158 87 3 1 157 1 153 1.36e-28 108
Msa0939870 MtrunA17_Chr4g0049901 39.247 186 104 5 1 181 27 208 2.68e-27 105
Msa0939870 MtrunA17_Chr1g0173161 69.565 69 21 0 1 69 1 69 3.25e-26 97.8
Msa0939870 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 1.42e-21 85.1
Msa0939870 MtrunA17_Chr4g0044071 64.912 57 20 0 1 57 1 57 7.63e-21 84.7
Msa0939870 MtrunA17_Chr3g0134451 58.571 70 29 0 1 70 1 70 7.74e-21 89.4
Msa0939870 MtrunA17_Chr5g0425191 66.667 57 19 0 1 57 1 57 1.66e-20 83.6
Msa0939870 MtrunA17_Chr2g0308271 32.000 200 113 6 54 250 27 206 2.91e-20 85.9
Msa0939870 MtrunA17_Chr2g0292791 52.174 69 32 1 2 70 9 76 1.97e-17 79.0
Msa0939870 MtrunA17_Chr1g0166611 75.556 45 11 0 16 60 20 64 2.13e-17 76.3
Msa0939870 MtrunA17_Chr1g0208581 49.275 69 34 1 2 70 9 76 6.43e-17 77.4
Msa0939870 MtrunA17_Chr1g0208561 49.275 69 34 1 2 70 9 76 7.05e-17 77.0
Msa0939870 MtrunA17_Chr3g0089141 49.275 69 34 1 2 70 9 76 7.34e-17 77.0
Msa0939870 MtrunA17_Chr2g0325971 47.826 69 35 1 2 70 9 76 1.57e-16 76.3
Msa0939870 MtrunA17_Chr3g0099421 52.174 69 32 1 2 70 34 101 1.63e-16 76.6
Msa0939870 MtrunA17_Chr8g0379021 42.708 96 50 3 2 96 12 103 5.74e-16 73.6
Msa0939870 MtrunA17_Chr3g0099411 49.275 69 34 1 2 70 9 76 5.86e-16 74.3
Msa0939870 MtrunA17_Chr5g0419601 51.429 70 33 1 1 70 8 76 7.10e-16 74.7
Msa0939870 MtrunA17_Chr8g0355091 49.275 69 34 1 2 70 9 76 7.54e-16 74.3
Msa0939870 MtrunA17_Chr1g0187361 49.275 69 34 1 2 70 9 76 8.60e-16 74.3
Msa0939870 MtrunA17_Chr1g0206701 49.275 69 34 1 2 70 9 76 9.23e-16 74.3
Msa0939870 MtrunA17_Chr1g0206721 49.275 69 34 1 2 70 9 76 9.23e-16 74.3
Msa0939870 MtrunA17_Chr1g0149391 50.725 69 33 1 2 70 9 76 2.42e-15 73.2
Msa0939870 MtrunA17_Chr2g0317451 50.725 69 33 1 2 70 9 76 3.45e-15 72.8
Msa0939870 MtrunA17_Chr1g0188671 49.275 69 34 1 2 70 47 114 3.55e-15 73.2
Msa0939870 MtrunA17_Chr2g0317481 50.725 69 33 1 2 70 9 76 3.73e-15 72.4
Msa0939870 MtrunA17_Chr2g0333981 48.611 72 36 1 1 72 11 81 9.38e-15 70.1
Msa0939870 MtrunA17_Chr1g0206991 46.377 69 36 1 2 70 9 76 1.15e-14 70.1
Msa0939870 MtrunA17_Chr8g0357771 49.206 63 31 1 1 63 1 62 1.54e-14 69.7
Msa0939870 MtrunA17_Chr8g0376821 52.632 57 27 0 1 57 1 57 2.02e-14 69.3
Msa0939870 MtrunA17_Chr5g0417661 47.143 70 30 1 1 70 56 118 2.30e-14 67.8
Msa0939870 MtrunA17_Chr5g0422941 49.275 69 34 1 2 70 9 76 2.82e-14 70.1
Msa0939870 MtrunA17_Chr5g0422421 49.275 69 34 1 2 70 9 76 4.12e-14 69.7
Msa0939870 MtrunA17_Chr1g0169761 52.632 57 27 0 1 57 1 57 6.39e-14 68.2
Msa0939870 MtrunA17_Chr4g0052061 32.168 143 85 5 1 139 1 135 1.01e-13 67.0
Msa0939870 MtrunA17_Chr1g0175611 50.877 57 28 0 1 57 1 57 1.24e-13 67.0
Msa0939870 MtrunA17_Chr2g0300441 46.479 71 35 2 2 70 7 76 2.29e-13 67.4
Msa0939870 MtrunA17_Chr1g0180591 49.123 57 29 0 1 57 1 57 2.75e-13 66.2
Msa0939870 MtrunA17_Chr3g0119901 42.857 70 39 1 1 70 8 76 3.30e-13 66.6
Msa0939870 MtrunA17_Chr4g0074101 49.123 57 29 0 1 57 1 57 3.44e-13 66.2
Msa0939870 MtrunA17_Chr3g0089151 43.478 69 38 1 2 70 9 76 3.97e-13 64.7
Msa0939870 MtrunA17_Chr1g0175601 50.877 57 28 0 1 57 1 57 4.45e-13 65.9
Msa0939870 MtrunA17_Chr3g0085241 42.857 70 39 1 1 70 40 108 9.32e-13 66.2
Msa0939870 MtrunA17_Chr2g0300421 50.000 56 28 0 2 57 9 64 1.52e-12 64.3
Msa0939870 MtrunA17_Chr4g0018951 46.835 79 35 2 16 94 26 97 1.57e-12 63.9
Msa0939870 MtrunA17_Chr4g0052081 41.429 70 40 1 1 70 1 69 1.57e-12 64.3
Msa0939870 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 1.67e-12 66.2
Msa0939870 MtrunA17_Chr7g0246401 34.307 137 73 5 122 250 2 129 5.87e-12 61.6
Msa0939870 MtrunA17_Chr8g0356071 45.614 57 31 0 1 57 1 57 1.84e-11 60.8
Msa0939870 MtrunA17_Chr1g0206691 48.333 60 30 1 11 70 1 59 3.08e-11 61.2
Msa0939870 MtrunA17_Chr1g0187351 48.333 60 30 1 11 70 1 59 5.40e-11 57.4
Msa0939870 MtrunA17_Chr5g0427961 31.818 110 75 0 62 171 5 114 8.84e-11 59.3
Msa0939870 MtrunA17_Chr3g0111841 51.786 56 26 1 8 63 2 56 9.36e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0939870 AT3G02310.1 73.228 254 60 4 1 250 1 250 2.21e-133 376
Msa0939870 AT5G15800.1 75.000 256 53 5 1 250 1 251 2.99e-126 358
Msa0939870 AT5G15800.2 73.384 263 56 5 1 250 1 262 3.49e-126 358
Msa0939870 AT3G02310.2 82.486 177 30 1 1 176 1 177 2.74e-102 296
Msa0939870 AT1G24260.1 62.257 257 75 4 1 249 1 243 3.02e-101 295
Msa0939870 AT1G24260.2 62.016 258 75 4 1 249 1 244 3.93e-101 295
Msa0939870 AT1G24260.3 61.265 253 71 3 1 249 1 230 9.28e-95 278
Msa0939870 AT2G03710.1 55.556 261 102 4 1 250 1 258 2.84e-94 278
Msa0939870 AT2G03710.2 55.556 261 101 5 1 250 1 257 2.01e-92 273
Msa0939870 AT2G03710.3 68.023 172 54 1 1 171 1 172 4.81e-81 241
Msa0939870 AT2G45650.1 49.027 257 119 7 1 250 1 252 5.18e-72 221
Msa0939870 AT1G69120.2 52.299 174 82 1 1 173 1 174 3.85e-58 185
Msa0939870 AT1G69120.1 52.299 174 82 1 1 173 1 174 2.45e-57 183
Msa0939870 AT5G60910.1 42.231 251 128 5 1 250 1 235 6.91e-57 182
Msa0939870 AT1G26310.1 53.409 176 79 1 1 173 1 176 9.21e-57 182
Msa0939870 AT3G61120.1 44.643 224 95 3 1 224 1 195 9.92e-54 174
Msa0939870 AT4G09960.6 44.886 176 93 3 1 174 2 175 7.35e-47 155
Msa0939870 AT4G09960.1 44.886 176 93 3 1 174 1 174 9.15e-47 155
Msa0939870 AT4G09960.5 44.886 176 93 3 1 174 11 184 1.23e-46 155
Msa0939870 AT4G09960.3 44.886 176 93 3 1 174 27 200 3.24e-46 155
Msa0939870 AT3G30260.1 51.299 154 70 2 1 151 1 152 1.78e-45 153
Msa0939870 AT2G45660.1 48.837 172 84 3 1 170 1 170 2.84e-45 151
Msa0939870 AT3G58780.1 47.159 176 87 4 1 173 16 188 8.88e-45 151
Msa0939870 AT3G58780.5 47.159 176 87 4 1 173 22 194 8.99e-45 151
Msa0939870 AT2G42830.1 47.727 176 86 4 1 173 16 188 3.09e-44 149
Msa0939870 AT4G18960.1 46.629 178 83 4 2 173 18 189 1.84e-43 147
Msa0939870 AT4G11880.2 51.282 156 76 0 1 156 1 156 1.88e-43 145
Msa0939870 AT4G11880.3 51.282 156 76 0 1 156 1 156 1.88e-43 145
Msa0939870 AT4G09960.4 46.203 158 81 3 1 156 96 251 2.04e-43 150
Msa0939870 AT4G09960.2 49.306 144 69 3 1 142 1 142 2.11e-43 146
Msa0939870 AT2G45660.2 49.367 158 76 3 1 156 1 156 3.91e-43 144
Msa0939870 AT4G22950.2 47.093 172 90 1 1 172 1 171 3.95e-43 144
Msa0939870 AT4G37940.1 36.596 235 137 5 1 230 1 228 6.69e-43 145
Msa0939870 AT2G42830.2 49.057 159 75 4 1 156 16 171 1.18e-42 145
Msa0939870 AT3G58780.2 46.023 176 82 4 1 173 16 181 1.80e-42 145
Msa0939870 AT4G22950.3 47.647 170 88 1 1 170 1 169 2.88e-42 144
Msa0939870 AT4G22950.1 47.647 170 88 1 1 170 1 169 2.88e-42 144
Msa0939870 AT4G11880.4 50.000 172 86 0 1 172 1 172 4.49e-42 143
Msa0939870 AT4G11880.1 50.000 172 86 0 1 172 1 172 4.49e-42 143
Msa0939870 AT3G58780.4 51.333 150 67 4 1 147 16 162 3.55e-41 142
Msa0939870 AT3G58780.3 42.000 200 87 4 1 173 16 213 4.65e-41 142
Msa0939870 AT5G62165.3 46.199 171 90 2 1 170 1 170 8.50e-41 139
Msa0939870 AT5G62165.1 46.199 171 90 2 1 170 1 170 8.50e-41 139
Msa0939870 AT5G62165.2 46.199 171 90 2 1 170 1 170 8.50e-41 139
Msa0939870 AT3G57230.1 43.275 171 96 1 1 171 1 170 9.62e-41 140
Msa0939870 AT3G57230.4 43.275 171 96 1 1 171 1 170 9.62e-41 140
Msa0939870 AT2G22630.1 38.500 200 113 2 1 200 1 190 3.83e-39 135
Msa0939870 AT2G22630.2 38.500 200 113 2 1 200 1 190 3.83e-39 135
Msa0939870 AT3G57230.2 48.252 143 73 1 1 143 1 142 1.02e-38 132
Msa0939870 AT4G37940.4 40.625 192 112 2 1 192 1 190 1.12e-38 134
Msa0939870 AT5G62165.17 46.497 157 82 2 1 156 1 156 1.47e-38 132
Msa0939870 AT5G62165.12 46.497 157 82 2 1 156 1 156 1.47e-38 132
Msa0939870 AT5G62165.11 46.497 157 82 2 1 156 1 156 1.47e-38 132
Msa0939870 AT2G14210.1 39.899 198 114 1 1 193 1 198 2.98e-38 134
Msa0939870 AT2G14210.2 39.899 198 114 1 1 193 1 198 3.33e-38 134
Msa0939870 AT5G51870.1 42.077 183 100 3 1 181 1 179 6.74e-38 132
Msa0939870 AT5G62165.6 46.259 147 77 2 1 146 1 146 1.23e-36 127
Msa0939870 AT5G62165.9 46.259 147 77 2 1 146 1 146 1.23e-36 127
Msa0939870 AT5G62165.7 46.259 147 77 2 1 146 1 146 1.23e-36 127
Msa0939870 AT5G62165.8 46.259 147 77 2 1 146 1 146 1.23e-36 127
Msa0939870 AT5G62165.13 46.259 147 77 2 1 146 1 146 1.23e-36 127
Msa0939870 AT5G62165.10 45.223 157 84 2 1 156 1 156 2.11e-36 128
Msa0939870 AT5G62165.4 45.223 157 84 2 1 156 1 156 2.11e-36 128
Msa0939870 AT4G37940.3 46.479 142 75 1 1 142 1 141 2.20e-36 127
Msa0939870 AT5G51870.4 42.938 177 95 3 1 175 1 173 1.04e-35 127
Msa0939870 AT5G51870.3 42.938 177 95 3 1 175 11 183 1.26e-35 127
Msa0939870 AT5G13790.2 40.807 223 121 6 1 218 1 217 2.07e-35 127
Msa0939870 AT5G13790.1 40.359 223 119 5 1 218 1 214 3.89e-35 126
Msa0939870 AT3G57390.3 43.333 180 93 2 1 172 1 179 6.29e-35 125
Msa0939870 AT5G51860.2 40.571 175 101 2 1 173 1 174 7.49e-35 124
Msa0939870 AT3G57390.1 43.333 180 93 2 1 172 1 179 9.92e-35 125
Msa0939870 AT5G51860.1 37.245 196 112 3 1 194 1 187 1.87e-34 123
Msa0939870 AT2G22540.3 40.476 168 98 2 1 167 1 167 2.12e-34 124
Msa0939870 AT2G22540.1 40.476 168 98 2 1 167 1 167 2.12e-34 124
Msa0939870 AT5G23260.2 37.264 212 120 4 1 211 1 200 5.04e-34 123
Msa0939870 AT5G20240.1 41.111 180 85 5 1 173 1 166 7.15e-34 122
Msa0939870 AT5G23260.4 37.264 212 120 4 1 211 17 216 7.43e-34 123
Msa0939870 AT1G71692.1 40.107 187 96 2 1 175 1 183 9.58e-34 121
Msa0939870 AT5G65050.2 38.889 180 103 2 1 180 1 173 1.03e-33 120
Msa0939870 AT5G10140.4 40.230 174 89 3 1 168 1 165 3.47e-33 119
Msa0939870 AT5G51870.2 44.521 146 78 2 1 144 1 145 4.08e-33 119
Msa0939870 AT5G65050.3 41.071 168 92 2 1 168 1 161 4.32e-33 119
Msa0939870 AT5G51870.5 44.521 146 78 2 1 144 24 168 1.41e-32 118
Msa0939870 AT5G65060.3 39.881 168 94 3 1 168 1 161 2.40e-32 117
Msa0939870 AT5G65050.5 39.881 168 83 2 1 168 1 150 3.96e-32 116
Msa0939870 AT5G65060.1 39.881 168 94 3 1 168 1 161 4.57e-32 116
Msa0939870 AT5G10140.1 42.953 149 74 2 1 147 1 140 4.98e-32 116
Msa0939870 AT5G10140.2 42.953 149 74 2 1 147 1 140 5.17e-32 115
Msa0939870 AT5G20240.2 46.575 146 61 4 1 139 1 136 6.93e-32 115
Msa0939870 AT5G10140.3 42.953 149 74 2 1 147 1 140 8.50e-32 115
Msa0939870 AT4G24540.1 37.500 224 125 6 1 218 1 215 1.59e-31 116
Msa0939870 AT5G65050.1 39.535 172 93 3 1 168 1 165 2.00e-31 114
Msa0939870 AT5G23260.1 36.792 212 116 5 1 211 17 211 1.01e-30 115
Msa0939870 AT5G65070.1 42.197 173 89 3 1 171 1 164 1.09e-30 113
Msa0939870 AT5G65060.2 38.690 168 85 3 1 168 1 150 1.14e-30 112
Msa0939870 AT5G62165.14 70.833 72 20 1 1 72 1 71 5.72e-30 108
Msa0939870 AT5G65080.3 41.401 157 83 3 1 156 8 156 1.71e-29 110
Msa0939870 AT5G23260.3 41.497 147 83 2 1 146 1 145 6.05e-29 109
Msa0939870 AT2G22540.2 36.905 168 99 2 1 167 1 162 1.11e-28 108
Msa0939870 AT5G65070.2 37.374 198 94 4 1 171 1 195 1.42e-27 106
Msa0939870 AT3G54340.1 37.572 173 103 2 1 172 1 169 3.40e-27 105
Msa0939870 AT1G31140.2 35.417 240 115 7 1 226 1 214 2.86e-26 102
Msa0939870 AT1G31140.1 34.199 231 128 5 1 226 1 212 4.29e-26 101
Msa0939870 AT5G65080.2 34.722 216 122 4 1 216 8 204 1.06e-25 100
Msa0939870 AT1G77080.5 38.728 173 99 2 1 173 1 166 1.90e-25 99.0
Msa0939870 AT1G77080.11 37.640 178 104 2 1 178 1 171 3.47e-25 98.2
Msa0939870 AT5G65070.4 42.282 149 75 3 1 147 1 140 3.52e-25 97.4
Msa0939870 AT1G77080.4 38.012 171 99 2 1 171 1 164 1.01e-24 97.8
Msa0939870 AT5G65070.5 36.612 183 86 4 1 156 1 180 3.89e-24 96.7
Msa0939870 AT5G65070.3 33.824 204 94 4 1 171 1 196 1.59e-23 95.5
Msa0939870 AT1G77080.8 33.333 195 102 3 1 171 1 191 6.42e-22 90.9
Msa0939870 AT1G22130.1 48.889 90 37 1 1 90 1 81 1.40e-20 89.4
Msa0939870 AT1G77080.2 36.842 171 97 3 1 171 1 160 1.48e-20 86.7
Msa0939870 AT1G77980.1 54.054 74 34 0 1 74 1 74 5.92e-20 87.8
Msa0939870 AT1G69120.3 40.179 112 66 1 63 173 1 112 1.36e-19 84.0
Msa0939870 AT5G60910.2 31.217 189 113 5 63 250 1 173 4.05e-18 79.7
Msa0939870 AT1G77080.12 37.179 156 87 3 1 156 1 145 6.24e-18 78.6
Msa0939870 AT1G77950.3 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa0939870 AT1G77950.2 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa0939870 AT1G77950.1 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa0939870 AT1G77950.4 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa0939870 AT1G65360.1 35.593 118 61 3 1 109 6 117 1.71e-16 76.3
Msa0939870 AT1G01530.1 35.484 155 88 4 1 154 6 149 2.34e-16 76.3
Msa0939870 AT4G37435.1 59.649 57 23 0 1 57 1 57 2.53e-16 75.1
Msa0939870 AT4G36590.1 41.379 87 50 1 2 88 7 92 1.22e-14 71.6
Msa0939870 AT2G03060.3 36.190 105 58 2 1 104 1 97 1.60e-14 72.8
Msa0939870 AT2G03060.7 36.190 105 58 2 1 104 1 97 1.60e-14 72.8
Msa0939870 AT2G03060.1 36.190 105 58 2 1 104 1 97 1.60e-14 72.8
Msa0939870 AT2G03060.2 36.190 105 58 2 1 104 1 97 1.96e-14 72.4
Msa0939870 AT5G60440.1 34.286 140 71 4 2 139 7 127 2.31e-14 71.6
Msa0939870 AT1G18750.4 52.632 57 27 0 1 57 1 57 3.46e-14 71.6
Msa0939870 AT1G18750.1 52.632 57 27 0 1 57 1 57 3.89e-14 71.6
Msa0939870 AT1G18750.3 52.632 57 27 0 1 57 1 57 4.54e-14 71.6
Msa0939870 AT3G04100.1 45.205 73 39 1 2 74 14 85 4.56e-14 69.3
Msa0939870 AT2G24840.1 47.143 70 36 1 1 70 62 130 5.29e-14 70.1
Msa0939870 AT1G72350.1 47.826 69 33 1 2 70 43 108 4.17e-13 67.0
Msa0939870 AT1G69540.1 29.703 202 113 7 1 173 1 202 5.18e-13 68.2
Msa0939870 AT1G69540.2 27.228 202 118 4 1 173 1 202 6.03e-13 68.2
Msa0939870 AT2G34440.1 38.889 72 43 1 1 72 1 71 1.20e-12 64.7
Msa0939870 AT3G66656.1 40.845 71 41 1 1 71 1 70 2.09e-12 64.3
Msa0939870 AT1G29962.1 46.377 69 36 1 2 70 8 75 8.01e-12 62.8
Msa0939870 AT4G37940.2 26.590 173 116 4 63 230 1 167 1.13e-11 62.0
Msa0939870 AT1G47760.1 35.714 112 62 3 1 111 1 103 1.67e-11 62.0
Msa0939870 AT1G28460.1 44.928 69 37 1 2 70 8 75 4.24e-11 60.8

Find 47 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCCATGTTTGCCTATAC+TGG 0.187965 6_3:-12091295 None:intergenic
CTTAATTGCAGAAACCTTCT+AGG 0.228646 6_3:+12089475 Msa0939870:intron
CTCATAAAGCTTGCCTCTAT+TGG 0.248430 6_3:-12087286 None:intergenic
ACTCAAGCTCAACAAGTTAA+TGG 0.276163 6_3:+12091975 Msa0939870:CDS
CTGCACCATAGCTGCACTTT+TGG 0.300781 6_3:-12088944 None:intergenic
ACAAAGCTTCTTTCAGCCTT+TGG 0.302611 6_3:+12091361 Msa0939870:CDS
CTTGATACAGGACTGATTAC+AGG 0.316120 6_3:+12091913 Msa0939870:intron
ATTAGCTGATCTTCAAAATA+AGG 0.323444 6_3:+12090240 Msa0939870:CDS
CAAGTTAATGGATTTATTCC+TGG 0.326103 6_3:+12091987 Msa0939870:CDS
TTCAAGCTGCTCAAGATCTT+TGG 0.326567 6_3:-12089521 None:intergenic
TTTATATACCTCAAGCTCTT+TGG 0.339567 6_3:-12088985 None:intergenic
ATTCTTCTCTCAAGCAAGTC+AGG 0.394687 6_3:+12089554 Msa0939870:CDS
CTTATTATCTTCTCCAATAG+AGG 0.396704 6_3:+12087273 Msa0939870:CDS
GCATGCTCAAAACGCTTGAT+AGG 0.415680 6_3:+12088919 Msa0939870:intron
GACCTAAGTCTTCACCTAGA+AGG 0.417033 6_3:-12089489 None:intergenic
ACATTTGCAAAGAGAAGAAA+TGG 0.424187 6_3:+12087198 Msa0939870:CDS
GGTGAAGACTTAGGTCCATT+AGG 0.427895 6_3:+12089496 Msa0939870:CDS
GGAAGCTGGTGATCAAAGTA+TGG 0.434521 6_3:+12091313 Msa0939870:CDS
TCAAGATCTTTGGTACCTAA+TGG 0.441434 6_3:-12089511 None:intergenic
TATTACCCTATCTGCAATGT+TGG 0.448140 6_3:-12091392 None:intergenic
AAACAGATCTTTGTCTATGA+AGG 0.464986 6_3:+12090364 Msa0939870:CDS
TGCAATCCAACATTGCAGAT+AGG 0.474506 6_3:+12091386 Msa0939870:CDS
GTTAGCTGATCTGATGCTAC+TGG 0.476275 6_3:-12091945 None:intergenic
GAGGAAGAGTGGAATTGAAA+AGG 0.478417 6_3:+12087148 Msa0939870:CDS
TATACCTCAAGCTCTTTGGC+AGG 0.482984 6_3:-12088981 None:intergenic
GCAATCCAACATTGCAGATA+GGG 0.488188 6_3:+12091387 Msa0939870:CDS
TCAATTCAAGAAGCCAGTAT+AGG 0.488366 6_3:+12091282 Msa0939870:CDS
TATAGGCAAACATGGGAAGC+TGG 0.508553 6_3:+12091299 Msa0939870:CDS
CAAGATTTGAATCTCTTCAA+AGG 0.513932 6_3:+12089354 Msa0939870:CDS
AGGTACCAAAAGTGCAGCTA+TGG 0.519687 6_3:+12088939 Msa0939870:CDS
GGTGATCAAAGTATGGCATA+TGG 0.522384 6_3:+12091320 Msa0939870:CDS
GAAAATGGGAAGAGGAAGAG+TGG 0.539131 6_3:+12087137 None:intergenic
TTAATGGATTTATTCCTGGA+TGG 0.541666 6_3:+12091991 Msa0939870:CDS
AATCTCTTCAAAGGACTCAA+AGG 0.546223 6_3:+12089363 Msa0939870:CDS
TTTGCAGACTCAATTCATGC+TGG 0.554411 6_3:+12090213 Msa0939870:intron
GAAGCCAGTATAGGCAAACA+TGG 0.556524 6_3:+12091291 Msa0939870:CDS
TTGAAGTTGAAAATGGGAAG+AGG 0.556816 6_3:+12087129 None:intergenic
CTTTCAGCTTCAAGTACTCA+CGG 0.561889 6_3:-12089331 None:intergenic
TTAGCTCAAAGCATCCATCC+AGG 0.582969 6_3:-12092005 None:intergenic
GCTTGAGAGAAGAATCAAGT+TGG 0.598020 6_3:-12089546 None:intergenic
CAAACCTGCCAAAGAGCTTG+AGG 0.604710 6_3:+12088977 Msa0939870:CDS
AATGTTGGATTGCACTCCAA+AGG 0.620049 6_3:-12091377 None:intergenic
AACCTTCTAGGTGAAGACTT+AGG 0.623261 6_3:+12089487 Msa0939870:CDS
AGCTGATCTGATGCTACTGG+AGG 0.648548 6_3:-12091942 None:intergenic
GTGTACATAGGAGCATATGT+TGG 0.664737 6_3:+12090334 Msa0939870:intron
CAAGCAAGTCAGGTCTACCA+AGG 0.672279 6_3:+12089564 Msa0939870:CDS
AAGCCAGTATAGGCAAACAT+GGG 0.684898 6_3:+12091292 Msa0939870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATTATAAAAAAATT+CGG + chr6_3:12090747-12090766 Msa0939870:intron 0.0%
!!! TATTTTTTTTTTAACTAATG+AGG + chr6_3:12087768-12087787 Msa0939870:intron 10.0%
!! AAAATGAGAAATTTATTTAT+TGG - chr6_3:12087986-12088005 None:intergenic 10.0%
!!! TATTTTTTGTTTTGTTGAAA+AGG + chr6_3:12087740-12087759 Msa0939870:intron 15.0%
!!! ATTTTTTGTTTTGTTGAAAA+GGG + chr6_3:12087741-12087760 Msa0939870:intron 15.0%
!! ACATATATTCAAATAAATCA+AGG + chr6_3:12087932-12087951 Msa0939870:intron 15.0%
!! AAAATACATTGAAAACAAAA+GGG - chr6_3:12088334-12088353 None:intergenic 15.0%
!!! CAACATTTTTCTTTTTAATT+TGG + chr6_3:12088712-12088731 Msa0939870:intron 15.0%
!! AATTTGATAAAACAAAATGT+TGG - chr6_3:12088854-12088873 None:intergenic 15.0%
!!! GCTATAAAACATTTAAAATA+TGG + chr6_3:12089241-12089260 Msa0939870:intron 15.0%
!!! TTTTGATATCTAACATTATA+TGG + chr6_3:12090182-12090201 Msa0939870:intron 15.0%
!! ACAAAAAAAAAAAATAAGTC+AGG + chr6_3:12090875-12090894 Msa0939870:intron 15.0%
!! CAAAAAAAAAAAATAAGTCA+GGG + chr6_3:12090876-12090895 Msa0939870:intron 15.0%
!! AAAAAAAAAAAATAAGTCAG+GGG + chr6_3:12090877-12090896 Msa0939870:intron 15.0%
!!! AATTCACAATAGTATTTTAA+AGG - chr6_3:12091079-12091098 None:intergenic 15.0%
!! ATTAATAAGAATGGATAAAT+AGG - chr6_3:12091200-12091219 None:intergenic 15.0%
!!! TAAAAAAAAAAATTTGTTGC+TGG + chr6_3:12091522-12091541 Msa0939870:intron 15.0%
!! ACAAATCAATAACAAATTTA+GGG - chr6_3:12091550-12091569 None:intergenic 15.0%
!! TACAAATCAATAACAAATTT+AGG - chr6_3:12091551-12091570 None:intergenic 15.0%
!!! TTTGTTATTGATTTGTAATT+AGG + chr6_3:12091554-12091573 Msa0939870:intron 15.0%
!!! AAAGGTTCTATATATTTTAT+AGG - chr6_3:12091866-12091885 None:intergenic 15.0%
!!! ATGAGATGTATTTTATTTGA+AGG + chr6_3:12087481-12087500 Msa0939870:intron 20.0%
!! CAAAGATATGAAATATACAA+AGG - chr6_3:12087686-12087705 None:intergenic 20.0%
!!! TTTTAACTAATGAGGATAAA+TGG + chr6_3:12087776-12087795 Msa0939870:intron 20.0%
!! TTGCATTTAGAAAGAAATTA+AGG + chr6_3:12088061-12088080 Msa0939870:intron 20.0%
!!! TTTAACACTTTTTCCATTTT+AGG + chr6_3:12088143-12088162 Msa0939870:intron 20.0%
!!! ATTTTTCTCTCTAATTTCTA+TGG + chr6_3:12088233-12088252 Msa0939870:intron 20.0%
!! AAATACATTGAAAACAAAAG+GGG - chr6_3:12088333-12088352 None:intergenic 20.0%
!! GAAAATACATTGAAAACAAA+AGG - chr6_3:12088335-12088354 None:intergenic 20.0%
!! AATAAGTGACAATAGAAATT+TGG - chr6_3:12088383-12088402 None:intergenic 20.0%
!!! ATAGACAATAACTTTTTTCT+AGG - chr6_3:12088759-12088778 None:intergenic 20.0%
!! AGAAAAAAGTTATTGTCTAT+AGG + chr6_3:12088759-12088778 Msa0939870:intron 20.0%
!!! ATTGTTATTCATGAATTGAT+TGG + chr6_3:12088871-12088890 Msa0939870:intron 20.0%
!! TTATCATGTGTATATTAAAG+GGG - chr6_3:12089134-12089153 None:intergenic 20.0%
!! CTTATCATGTGTATATTAAA+GGG - chr6_3:12089135-12089154 None:intergenic 20.0%
!! ACTTATCATGTGTATATTAA+AGG - chr6_3:12089136-12089155 None:intergenic 20.0%
!! GTAATAATAAGCTATTCATA+AGG - chr6_3:12089898-12089917 None:intergenic 20.0%
!!! GTTTGAAATATTAATAGAGT+CGG - chr6_3:12090099-12090118 None:intergenic 20.0%
!!! TTGTCAAAATTTTCTCATTT+AGG + chr6_3:12090012-12090031 Msa0939870:intron 20.0%
!!! AATGGATTATTATATGTGTT+AGG - chr6_3:12090311-12090330 None:intergenic 20.0%
!!! GACGAAATTTTAAATGATTA+AGG - chr6_3:12090966-12090985 None:intergenic 20.0%
!!! CTGAAAAAACTGAAATTTTT+CGG + chr6_3:12090791-12090810 Msa0939870:intron 20.0%
!! AAAAAAATTCGAGAAAAAAC+TGG + chr6_3:12090828-12090847 Msa0939870:intron 20.0%
!! AAAAAATTCGAGAAAAAACT+GGG + chr6_3:12090829-12090848 Msa0939870:intron 20.0%
!!! GACGAAATTTTAAATGATTA+AGG + chr6_3:12090966-12090985 Msa0939870:intron 20.0%
!!! ATAGTATTTTAAAGGCTTAA+TGG - chr6_3:12091071-12091090 None:intergenic 20.0%
!!! ATTGTGAATTCTTTTTGAAA+AGG + chr6_3:12091089-12091108 Msa0939870:intron 20.0%
!! AAGGACTTAATTAATAAGAA+TGG - chr6_3:12091209-12091228 None:intergenic 20.0%
!! CAAATCAATAACAAATTTAG+GGG - chr6_3:12091549-12091568 None:intergenic 20.0%
!!! TCTATATATTTTATAGGTGT+CGG - chr6_3:12091860-12091879 None:intergenic 20.0%
!! GTGTTAGTATTTGAGTTTAT+TGG + chr6_3:12087564-12087583 Msa0939870:intron 25.0%
! TATTTATTGGTACTAAACTC+AGG - chr6_3:12087973-12087992 None:intergenic 25.0%
! TGAAATCTCTACTCATATAA+TGG + chr6_3:12088116-12088135 Msa0939870:intron 25.0%
! CTTTATCAATGGTGAATTTA+AGG - chr6_3:12088169-12088188 None:intergenic 25.0%
! CACAAAAATCACTTTATCAA+TGG - chr6_3:12088180-12088199 None:intergenic 25.0%
!! GATAAAGTGATTTTTGTGTT+AGG + chr6_3:12088182-12088201 Msa0939870:intron 25.0%
! TGAAGAGAAAAATAGAACTT+TGG - chr6_3:12088271-12088290 None:intergenic 25.0%
! AATACATTGAAAACAAAAGG+GGG - chr6_3:12088332-12088351 None:intergenic 25.0%
! ATGACTGAAAACTATCATAT+AGG - chr6_3:12088529-12088548 None:intergenic 25.0%
! AGGAAAAAGAACAAAAAGTA+AGG - chr6_3:12088557-12088576 None:intergenic 25.0%
! AAAAAGTTATTGTCTATAGG+AGG + chr6_3:12088762-12088781 Msa0939870:intron 25.0%
! AATTAAGGAACAAAATGACA+TGG - chr6_3:12089462-12089481 None:intergenic 25.0%
!!! CTTAGTTTTGATCTTGAAAA+TGG + chr6_3:12089827-12089846 Msa0939870:intron 25.0%
!!! AGAAAATTTTGACAAAGACA+TGG - chr6_3:12090007-12090026 None:intergenic 25.0%
! TTGTCAAAAGTTTCTCAATT+AGG - chr6_3:12090067-12090086 None:intergenic 25.0%
!!! TATTTTGAAGATCAGCTAAT+TGG - chr6_3:12090240-12090259 None:intergenic 25.0%
! ATTAGCTGATCTTCAAAATA+AGG + chr6_3:12090240-12090259 Msa0939870:CDS 25.0%
!!! TAATCCATTTTTGTGTACAT+AGG + chr6_3:12090322-12090341 Msa0939870:intron 25.0%
!! AAAGTACTTGGAACATTTAA+AGG + chr6_3:12090463-12090482 Msa0939870:intron 25.0%
! TAAATGATTAAGGTTTGCAA+GGG - chr6_3:12090566-12090585 None:intergenic 25.0%
! TTAAATGATTAAGGTTTGCA+AGG - chr6_3:12090567-12090586 None:intergenic 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG - chr6_3:12090667-12090686 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG - chr6_3:12090668-12090687 None:intergenic 25.0%
!! AACTGGGAAAAAAATTTTGA+AGG + chr6_3:12090845-12090864 Msa0939870:intron 25.0%
! TTAAATGATTAAGGATTGCA+AGG + chr6_3:12090975-12090994 Msa0939870:intron 25.0%
! TAAATGATTAAGGATTGCAA+GGG + chr6_3:12090976-12090995 Msa0939870:intron 25.0%
! TAACCTACTCTTACAATATA+AGG + chr6_3:12091155-12091174 Msa0939870:intron 25.0%
! ATTACTATTCTATTGAAAGC+TGG + chr6_3:12091247-12091266 Msa0939870:intron 25.0%
! AGCAACAACAGAAAATAAAA+TGG - chr6_3:12091427-12091446 None:intergenic 25.0%
! ATTAGGTTTAATTACTCTCT+AGG + chr6_3:12091460-12091479 Msa0939870:intron 25.0%
ACATTTGCAAAGAGAAGAAA+TGG + chr6_3:12087198-12087217 Msa0939870:CDS 30.0%
CTTATTATCTTCTCCAATAG+AGG + chr6_3:12087273-12087292 Msa0939870:CDS 30.0%
ACAAAAACAGAAACATACCT+AGG - chr6_3:12087324-12087343 None:intergenic 30.0%
TAGAGATATAGTACATGATC+TGG + chr6_3:12087599-12087618 Msa0939870:intron 30.0%
ATATGTAAATCTAGTACTGC+TGG - chr6_3:12087918-12087937 None:intergenic 30.0%
TGTGTTAGGAATTTCAAAGT+TGG + chr6_3:12088196-12088215 Msa0939870:intron 30.0%
ATACATTGAAAACAAAAGGG+GGG - chr6_3:12088331-12088350 None:intergenic 30.0%
AAGTGACAATAGAAATTTGG+TGG - chr6_3:12088380-12088399 None:intergenic 30.0%
TGATACTCATTCTGTCATAT+TGG + chr6_3:12088581-12088600 Msa0939870:intron 30.0%
GATACTCATTCTGTCATATT+GGG + chr6_3:12088582-12088601 Msa0939870:intron 30.0%
ATACTCATTCTGTCATATTG+GGG + chr6_3:12088583-12088602 Msa0939870:intron 30.0%
ACACATATATGTGCTGAATT+GGG + chr6_3:12088645-12088664 Msa0939870:intron 30.0%
CTGAATTGGGATATATTTAG+TGG + chr6_3:12088658-12088677 Msa0939870:intron 30.0%
!! TTTAATTTGGCTTCACAACA+TGG + chr6_3:12088725-12088744 Msa0939870:intron 30.0%
CAAGATATATCCCTACATAT+AGG - chr6_3:12088829-12088848 None:intergenic 30.0%
CTATATGTAGGGATATATCT+TGG + chr6_3:12088827-12088846 Msa0939870:intron 30.0%
TTTATATACCTCAAGCTCTT+TGG - chr6_3:12088988-12089007 None:intergenic 30.0%
GTAGTATATGATAAGCACTT+AGG - chr6_3:12089092-12089111 None:intergenic 30.0%
AGAGATGTTGAAAAAATACG+CGG - chr6_3:12089192-12089211 None:intergenic 30.0%
CAAGATTTGAATCTCTTCAA+AGG + chr6_3:12089354-12089373 Msa0939870:CDS 30.0%
! AGAGACAGATTTTTATACCT+TGG - chr6_3:12089584-12089603 None:intergenic 30.0%
CATAAATTTGACGTCTCTAA+CGG - chr6_3:12089621-12089640 None:intergenic 30.0%
!! TCACATTTTACTGTCACTTA+GGG - chr6_3:12089803-12089822 None:intergenic 30.0%
!! TTCACATTTTACTGTCACTT+AGG - chr6_3:12089804-12089823 None:intergenic 30.0%
TCCTAATATTTCCTTGTCTA+AGG + chr6_3:12089869-12089888 Msa0939870:intron 30.0%
ACCTTAGACAAGGAAATATT+AGG - chr6_3:12089873-12089892 None:intergenic 30.0%
TTGAGAGTAAACCACTAAAT+TGG + chr6_3:12089920-12089939 Msa0939870:intron 30.0%
!! ATGTTTTTGTCACATGACAA+GGG - chr6_3:12090039-12090058 None:intergenic 30.0%
!! TATGTTTTTGTCACATGACA+AGG - chr6_3:12090040-12090059 None:intergenic 30.0%
GTAAGAACAAACCACTAAAT+TGG - chr6_3:12090159-12090178 None:intergenic 30.0%
GATCTTCAAAATAAGGTACA+TGG + chr6_3:12090247-12090266 Msa0939870:intron 30.0%
AAACAGATCTTTGTCTATGA+AGG + chr6_3:12090364-12090383 Msa0939870:CDS 30.0%
TGGAACATTTAAAGGCTTAA+TGG + chr6_3:12090471-12090490 Msa0939870:intron 30.0%
AAGGAAAAAAAATAAGCCAG+GGG - chr6_3:12090666-12090685 None:intergenic 30.0%
!! AGTAGGTTACTTTAGTCTTA+AGG - chr6_3:12091144-12091163 None:intergenic 30.0%
AGTCCTTATATTGTAAGAGT+AGG - chr6_3:12091161-12091180 None:intergenic 30.0%
!! TGCTAAAGCTGATTTGAATT+AGG + chr6_3:12091443-12091462 Msa0939870:intron 30.0%
!! CAAGTTAATGGATTTATTCC+TGG + chr6_3:12091987-12092006 Msa0939870:CDS 30.0%
!! TTAATGGATTTATTCCTGGA+TGG + chr6_3:12091991-12092010 Msa0939870:CDS 30.0%
! GGTGAATTTAAGGCCTAAAA+TGG - chr6_3:12088159-12088178 None:intergenic 35.0%
GACAGAATGAGTATCATAAC+AGG - chr6_3:12088577-12088596 None:intergenic 35.0%
TACTCATTCTGTCATATTGG+GGG + chr6_3:12088584-12088603 Msa0939870:intron 35.0%
CACACATATATGTGCTGAAT+TGG + chr6_3:12088644-12088663 Msa0939870:intron 35.0%
ATAACCATGCTCCTATATGT+AGG + chr6_3:12088815-12088834 Msa0939870:intron 35.0%
TAACCATGCTCCTATATGTA+GGG + chr6_3:12088816-12088835 Msa0939870:intron 35.0%
!! TGCTGATTCAAGGAAAACAA+AGG - chr6_3:12088902-12088921 None:intergenic 35.0%
ATTAAAGGGGCTTATAACCA+GGG - chr6_3:12089121-12089140 None:intergenic 35.0%
TATTAAAGGGGCTTATAACC+AGG - chr6_3:12089122-12089141 None:intergenic 35.0%
AATCTCTTCAAAGGACTCAA+AGG + chr6_3:12089363-12089382 Msa0939870:CDS 35.0%
CTAGAAGGTTTCTGCAATTA+AGG - chr6_3:12089477-12089496 None:intergenic 35.0%
CTTAATTGCAGAAACCTTCT+AGG + chr6_3:12089475-12089494 Msa0939870:intron 35.0%
TCAAGATCTTTGGTACCTAA+TGG - chr6_3:12089514-12089533 None:intergenic 35.0%
GATACGACGAAAATTAGAGA+CGG - chr6_3:12089647-12089666 None:intergenic 35.0%
TCATAAGGAAACCTTAGACA+AGG - chr6_3:12089883-12089902 None:intergenic 35.0%
AAAGACAGAGACCAATTTAG+TGG - chr6_3:12090145-12090164 None:intergenic 35.0%
! AAATTGGTCTCTGTCTTTGT+AGG - chr6_3:12089936-12089955 None:intergenic 35.0%
AAAGACAGAGACCAATTTAG+TGG + chr6_3:12090145-12090164 Msa0939870:intron 35.0%
TGCTCCTATGTACACAAAAA+TGG - chr6_3:12090329-12090348 None:intergenic 35.0%
ACCATGCATAAGAACAATAG+TGG - chr6_3:12090412-12090431 None:intergenic 35.0%
! GTGTACTTGTCTAAAGTACT+TGG + chr6_3:12090451-12090470 Msa0939870:intron 35.0%
TTAAATGACGCCTAATTGCA+GGG - chr6_3:12091035-12091054 None:intergenic 35.0%
TTTAAATGACGCCTAATTGC+AGG - chr6_3:12091034-12091053 None:intergenic 35.0%
!! GCATTGATTAAGTTGGTCAA+AGG - chr6_3:12090944-12090963 None:intergenic 35.0%
!! ATTTTGGTAAAATGCTGACG+TGG - chr6_3:12090620-12090639 None:intergenic 35.0%
! ACGTCAGCATTTTACCAAAA+TGG + chr6_3:12090619-12090638 Msa0939870:intron 35.0%
! AGCATTTTACCAAAATGGCA+TGG + chr6_3:12090624-12090643 Msa0939870:intron 35.0%
! GCATTTTACCAAAATGGCAT+GGG + chr6_3:12090625-12090644 Msa0939870:intron 35.0%
! CATTTTACCAAAATGGCATG+GGG + chr6_3:12090626-12090645 Msa0939870:intron 35.0%
GCAAATTAGCAAAATGGCAT+GGG - chr6_3:12090917-12090936 None:intergenic 35.0%
AGCAAATTAGCAAAATGGCA+TGG - chr6_3:12090918-12090937 None:intergenic 35.0%
ACGTCAGCAAATTAGCAAAA+TGG - chr6_3:12090923-12090942 None:intergenic 35.0%
!!! ATTTTGCTAATTTGCTGACG+TGG + chr6_3:12090922-12090941 Msa0939870:intron 35.0%
!! GCATTGATTAAGTTGGTCAA+AGG + chr6_3:12090944-12090963 Msa0939870:intron 35.0%
TTTAAATGACGCCTAATTGC+AGG + chr6_3:12091034-12091053 Msa0939870:intron 35.0%
TTAAATGACGCCTAATTGCA+GGG + chr6_3:12091035-12091054 Msa0939870:intron 35.0%
TCAATCAAATCATCAGCACA+AGG - chr6_3:12091228-12091247 None:intergenic 35.0%
TCAATTCAAGAAGCCAGTAT+AGG + chr6_3:12091282-12091301 Msa0939870:CDS 35.0%
TATTACCCTATCTGCAATGT+TGG - chr6_3:12091395-12091414 None:intergenic 35.0%
ACCTACTTATAGTGCATGTT+TGG + chr6_3:12091692-12091711 Msa0939870:intron 35.0%
TCCAAACATGCACTATAAGT+AGG - chr6_3:12091696-12091715 None:intergenic 35.0%
AAACCATTGTTCCTTGATAC+AGG + chr6_3:12091901-12091920 Msa0939870:intron 35.0%
ACTCAAGCTCAACAAGTTAA+TGG + chr6_3:12091975-12091994 Msa0939870:CDS 35.0%
GAGGAAGAGTGGAATTGAAA+AGG + chr6_3:12087148-12087167 Msa0939870:CDS 40.0%
CTCATAAAGCTTGCCTCTAT+TGG - chr6_3:12087289-12087308 None:intergenic 40.0%
!! ATGAGTTTTGTAGCAGTCCT+AGG + chr6_3:12087304-12087323 Msa0939870:CDS 40.0%
GGCTAAAGAGGTAGCATATT+AGG - chr6_3:12088302-12088321 None:intergenic 40.0%
TATCCCTACATATAGGAGCA+TGG - chr6_3:12088822-12088841 None:intergenic 40.0%
!!! GTTTTGAGCATGCTGATTCA+AGG - chr6_3:12088912-12088931 None:intergenic 40.0%
CTTTCAGCTTCAAGTACTCA+CGG - chr6_3:12089334-12089353 None:intergenic 40.0%
AACCTTCTAGGTGAAGACTT+AGG + chr6_3:12089487-12089506 Msa0939870:CDS 40.0%
TTCAAGCTGCTCAAGATCTT+TGG - chr6_3:12089524-12089543 None:intergenic 40.0%
GCTTGAGAGAAGAATCAAGT+TGG - chr6_3:12089549-12089568 None:intergenic 40.0%
ATTCTTCTCTCAAGCAAGTC+AGG + chr6_3:12089554-12089573 Msa0939870:CDS 40.0%
!! GTCGTATCAACGCTTTTTAG+TGG + chr6_3:12089659-12089678 Msa0939870:intron 40.0%
TTTGCAGACTCAATTCATGC+TGG + chr6_3:12090213-12090232 Msa0939870:intron 40.0%
! GTGTACATAGGAGCATATGT+TGG + chr6_3:12090334-12090353 Msa0939870:intron 40.0%
AACAATAGTGGCATGGATGA+TGG - chr6_3:12090400-12090419 None:intergenic 40.0%
GCATAAGAACAATAGTGGCA+TGG - chr6_3:12090407-12090426 None:intergenic 40.0%
GCCACTATTGTTCTTATGCA+TGG + chr6_3:12090408-12090427 Msa0939870:intron 40.0%
TGTGTTTGATCCCTGCAATT+AGG + chr6_3:12090494-12090513 Msa0939870:intron 40.0%
! TGCCAGGATTAGCAATTACA+GGG - chr6_3:12090538-12090557 None:intergenic 40.0%
! TTGCCAGGATTAGCAATTAC+AGG - chr6_3:12090539-12090558 None:intergenic 40.0%
!! TGACGTGGCATTGATTAAGT+TGG - chr6_3:12090937-12090956 None:intergenic 40.0%
!! TGACGTGGCATTGATTAAGT+TGG + chr6_3:12090937-12090956 Msa0939870:intron 40.0%
TGTGTTTGATCCCTGCAATT+AGG - chr6_3:12090494-12090513 None:intergenic 40.0%
AAGCCAGTATAGGCAAACAT+GGG + chr6_3:12091292-12091311 Msa0939870:CDS 40.0%
GGTGATCAAAGTATGGCATA+TGG + chr6_3:12091320-12091339 Msa0939870:CDS 40.0%
ACAAAGCTTCTTTCAGCCTT+TGG + chr6_3:12091361-12091380 Msa0939870:CDS 40.0%
AATGTTGGATTGCACTCCAA+AGG - chr6_3:12091380-12091399 None:intergenic 40.0%
TGCAATCCAACATTGCAGAT+AGG + chr6_3:12091386-12091405 Msa0939870:CDS 40.0%
GCAATCCAACATTGCAGATA+GGG + chr6_3:12091387-12091406 Msa0939870:CDS 40.0%
CGATGAGTTAGCCAAAATCA+CGG - chr6_3:12091800-12091819 None:intergenic 40.0%
!!! CGTGATTTTGGCTAACTCAT+CGG + chr6_3:12091798-12091817 Msa0939870:intron 40.0%
AGTCCTGTATCAAGGAACAA+TGG - chr6_3:12091907-12091926 None:intergenic 40.0%
CTGTAATCAGTCCTGTATCA+AGG - chr6_3:12091915-12091934 None:intergenic 40.0%
CTTGATACAGGACTGATTAC+AGG + chr6_3:12091913-12091932 Msa0939870:intron 40.0%
GCATGCTCAAAACGCTTGAT+AGG + chr6_3:12088919-12088938 Msa0939870:intron 45.0%
! AGGTACCAAAAGTGCAGCTA+TGG + chr6_3:12088939-12088958 Msa0939870:CDS 45.0%
TATACCTCAAGCTCTTTGGC+AGG - chr6_3:12088984-12089003 None:intergenic 45.0%
TCATATACTACCTTCGTCCC+TGG + chr6_3:12089101-12089120 Msa0939870:intron 45.0%
GACCTAAGTCTTCACCTAGA+AGG - chr6_3:12089492-12089511 None:intergenic 45.0%
GGTGAAGACTTAGGTCCATT+AGG + chr6_3:12089496-12089515 Msa0939870:CDS 45.0%
! GCCAGGATTAGCAATTACAG+GGG - chr6_3:12090537-12090556 None:intergenic 45.0%
!! GTCAATTCCCCATGCCATTT+TGG - chr6_3:12090636-12090655 None:intergenic 45.0%
GGAATTGACGAAAATACCCC+TGG + chr6_3:12090647-12090666 Msa0939870:intron 45.0%
! TTGCCAGGATTAGCGATTAC+AGG + chr6_3:12091003-12091022 Msa0939870:intron 45.0%
! TGCCAGGATTAGCGATTACA+GGG + chr6_3:12091004-12091023 Msa0939870:intron 45.0%
GAAGCCAGTATAGGCAAACA+TGG + chr6_3:12091291-12091310 Msa0939870:CDS 45.0%
CTTCCCATGTTTGCCTATAC+TGG - chr6_3:12091298-12091317 None:intergenic 45.0%
TATAGGCAAACATGGGAAGC+TGG + chr6_3:12091299-12091318 Msa0939870:CDS 45.0%
GGAAGCTGGTGATCAAAGTA+TGG + chr6_3:12091313-12091332 Msa0939870:CDS 45.0%
! ACAGTGACTCACCGTGATTT+TGG + chr6_3:12091786-12091805 Msa0939870:intron 45.0%
GTTAGCTGATCTGATGCTAC+TGG - chr6_3:12091948-12091967 None:intergenic 45.0%
!!! AATTTTGAAAATTTTTTTTA+AGG - chr6_3:12090685-12090704 None:intergenic 5.0%
!!! TAAAAAATTTAAAATAGTTT+AGG - chr6_3:12091487-12091506 None:intergenic 5.0%
!!! CTATTTTAAATTTTTTAAAT+AGG + chr6_3:12091490-12091509 Msa0939870:intron 5.0%
!!! TCAAATTATTTAAAATTTTA+AGG + chr6_3:12091669-12091688 Msa0939870:intron 5.0%
!!! TTTAGAATTTAATAATTTAA+AGG - chr6_3:12091884-12091903 None:intergenic 5.0%
TGAAAACAAAAGGGGGGCCT+GGG - chr6_3:12088325-12088344 None:intergenic 50.0%
TTGAAAACAAAAGGGGGGCC+TGG - chr6_3:12088326-12088345 None:intergenic 50.0%
! CTGCACCATAGCTGCACTTT+TGG - chr6_3:12088947-12088966 None:intergenic 50.0%
CAAACCTGCCAAAGAGCTTG+AGG + chr6_3:12088977-12088996 Msa0939870:CDS 50.0%
CAAGCAAGTCAGGTCTACCA+AGG + chr6_3:12089564-12089583 Msa0939870:CDS 50.0%
GCCCCTGTAATTGCTAATCC+TGG + chr6_3:12090533-12090552 Msa0939870:intron 50.0%
GTTTGCAAGGGCAATTTGCC+AGG - chr6_3:12090554-12090573 None:intergenic 50.0%
GATTGCAAGGGCAATTTGCC+AGG + chr6_3:12090988-12091007 Msa0939870:intron 50.0%
GTCCCTGTAATCGCTAATCC+TGG - chr6_3:12091009-12091028 None:intergenic 50.0%
AGCTGATCTGATGCTACTGG+AGG - chr6_3:12091945-12091964 None:intergenic 50.0%
ATGCTACCTCTTTAGCCCCC+AGG + chr6_3:12088305-12088324 Msa0939870:intron 55.0%
AAAACAAAAGGGGGGCCTGG+GGG - chr6_3:12088323-12088342 None:intergenic 55.0%
GAAAACAAAAGGGGGGCCTG+GGG - chr6_3:12088324-12088343 None:intergenic 55.0%
GGGCTTATAACCAGGGACGA+AGG - chr6_3:12089114-12089133 None:intergenic 55.0%
GGGGGGCCTGGGGGCTAAAG+AGG - chr6_3:12088314-12088333 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 12087141 12092022 12087141 ID=Msa0939870;Name=Msa0939870
chr6_3 mRNA 12087141 12092022 12087141 ID=Msa0939870-mRNA-1;Parent=Msa0939870;Name=Msa0939870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|8|0|250
chr6_3 exon 12087141 12087325 12087141 ID=Msa0939870-mRNA-1:exon:3973;Parent=Msa0939870-mRNA-1
chr6_3 exon 12088920 12088998 12088920 ID=Msa0939870-mRNA-1:exon:3974;Parent=Msa0939870-mRNA-1
chr6_3 exon 12089323 12089384 12089323 ID=Msa0939870-mRNA-1:exon:3975;Parent=Msa0939870-mRNA-1
chr6_3 exon 12089486 12089585 12089486 ID=Msa0939870-mRNA-1:exon:3976;Parent=Msa0939870-mRNA-1
chr6_3 exon 12090220 12090261 12090220 ID=Msa0939870-mRNA-1:exon:3977;Parent=Msa0939870-mRNA-1
chr6_3 exon 12090344 12090385 12090344 ID=Msa0939870-mRNA-1:exon:3978;Parent=Msa0939870-mRNA-1
chr6_3 exon 12091266 12091408 12091266 ID=Msa0939870-mRNA-1:exon:3979;Parent=Msa0939870-mRNA-1
chr6_3 exon 12091923 12092022 12091923 ID=Msa0939870-mRNA-1:exon:3980;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12087141 12087325 12087141 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12088920 12088998 12088920 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12089323 12089384 12089323 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12089486 12089585 12089486 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12090220 12090261 12090220 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12090344 12090385 12090344 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12091266 12091408 12091266 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
chr6_3 CDS 12091923 12092022 12091923 ID=Msa0939870-mRNA-1:cds;Parent=Msa0939870-mRNA-1
Gene Sequence

>Msa0939870

ATGGGAAGAGGAAGAGTGGAATTGAAAAGGATAGAGAATAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTATCTTCTCCAATAGAGGCAAGCTTTATGAGTTTTGTAGCAGTCCTAGCATGCTCAAAACGCTTGATAGGTACCAAAAGTGCAGCTATGGTGCAGTAGAAGTTAACAAACCTGCCAAAGAGCTTGAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAACCTTCTAGGTGAAGACTTAGGTCCATTAGGTACCAAAGATCTTGAGCAGCTTGAACGCCAACTTGATTCTTCTCTCAAGCAAGTCAGGTCTACCAAGACTCAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCATATGTTGGTAGAAGCAAACAGATCTTTGTCTATGAAGCTGGAAGAAATCAATATCAATTCAAGAAGCCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTAATCAAAATGCTCATTCACAAAGCTTCTTTCAGCCTTTGGAGTGCAATCCAACATTGCAGATAGGGACTGATTACAGGTACAGTCCTCCAGTAGCATCAGATCAGCTAACTGCAACAACTCAAGCTCAACAAGTTAATGGATTTATTCCTGGATGGATGCTTTGA
Protein sequence

>Msa0939870

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLDRYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLEEININSRSQYRQTWEAGDQSMAYGNQNAHSQSFFQPLECNPTLQIGTDYRYSPPVASDQLTATTQAQQVNGFIPGWML*