Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939880 | sp|Q8LE94|RING3_ARATH | 57.083 | 240 | 79 | 5 | 1 | 226 | 1 | 230 | 5.18e-84 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939880 | B7FJT3 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 6.73e-168 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0807470 | Msa0939880 | 0.803719 | 3.048677e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939880 | MtrunA17_Chr6g0455521 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 1.30e-171 | 471 |
| Msa0939880 | MtrunA17_Chr7g0220221 | 71.239 | 226 | 65 | 0 | 1 | 226 | 1 | 226 | 4.98e-122 | 345 |
| Msa0939880 | MtrunA17_Chr7g0248061 | 35.754 | 179 | 91 | 3 | 49 | 223 | 28 | 186 | 9.93e-28 | 104 |
| Msa0939880 | MtrunA17_Chr8g0348651 | 35.976 | 164 | 85 | 3 | 60 | 223 | 43 | 186 | 4.05e-25 | 97.8 |
| Msa0939880 | MtrunA17_Chr8g0387191 | 32.479 | 234 | 115 | 8 | 1 | 223 | 1 | 202 | 5.31e-23 | 92.4 |
| Msa0939880 | MtrunA17_Chr2g0322261 | 36.486 | 74 | 45 | 1 | 156 | 227 | 14 | 87 | 1.60e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939880 | AT5G15790.2 | 58.009 | 231 | 92 | 3 | 1 | 226 | 1 | 231 | 3.77e-91 | 268 |
| Msa0939880 | AT5G15790.5 | 58.009 | 231 | 92 | 3 | 1 | 226 | 1 | 231 | 3.77e-91 | 268 |
| Msa0939880 | AT5G15790.1 | 58.009 | 231 | 92 | 3 | 1 | 226 | 1 | 231 | 3.77e-91 | 268 |
| Msa0939880 | AT5G15790.3 | 58.009 | 231 | 92 | 3 | 1 | 226 | 1 | 231 | 3.77e-91 | 268 |
| Msa0939880 | AT5G15790.4 | 57.456 | 228 | 92 | 3 | 1 | 223 | 1 | 228 | 1.53e-88 | 262 |
| Msa0939880 | AT5G38895.1 | 53.097 | 226 | 96 | 2 | 1 | 225 | 1 | 217 | 1.25e-86 | 256 |
| Msa0939880 | AT5G38895.2 | 53.097 | 226 | 96 | 2 | 1 | 225 | 76 | 292 | 4.22e-86 | 257 |
| Msa0939880 | AT5G38895.3 | 53.097 | 226 | 96 | 2 | 1 | 225 | 115 | 331 | 2.12e-85 | 257 |
| Msa0939880 | AT3G02290.6 | 57.083 | 240 | 79 | 5 | 1 | 226 | 1 | 230 | 5.27e-85 | 252 |
| Msa0939880 | AT3G02290.4 | 57.083 | 240 | 79 | 5 | 1 | 226 | 1 | 230 | 5.27e-85 | 252 |
| Msa0939880 | AT3G02290.1 | 57.083 | 240 | 79 | 5 | 1 | 226 | 1 | 230 | 5.27e-85 | 252 |
| Msa0939880 | AT3G02290.2 | 57.083 | 240 | 79 | 5 | 1 | 226 | 1 | 230 | 5.27e-85 | 252 |
| Msa0939880 | AT3G02290.3 | 57.083 | 240 | 79 | 5 | 1 | 226 | 1 | 230 | 5.27e-85 | 252 |
| Msa0939880 | AT3G02290.5 | 56.540 | 237 | 79 | 5 | 1 | 223 | 1 | 227 | 5.53e-82 | 244 |
| Msa0939880 | AT5G41350.1 | 37.363 | 182 | 101 | 3 | 50 | 226 | 37 | 210 | 3.57e-28 | 106 |
| Msa0939880 | AT5G41350.3 | 37.363 | 182 | 101 | 3 | 50 | 226 | 37 | 210 | 3.57e-28 | 106 |
| Msa0939880 | AT5G41350.2 | 37.363 | 182 | 101 | 3 | 50 | 226 | 62 | 235 | 8.05e-28 | 106 |
| Msa0939880 | AT4G00335.2 | 31.553 | 206 | 108 | 6 | 20 | 225 | 15 | 187 | 2.99e-22 | 90.5 |
| Msa0939880 | AT4G00335.1 | 31.553 | 206 | 108 | 6 | 20 | 225 | 15 | 187 | 2.99e-22 | 90.5 |
| Msa0939880 | AT4G00335.3 | 31.553 | 206 | 108 | 6 | 20 | 225 | 15 | 187 | 2.99e-22 | 90.5 |
| Msa0939880 | AT1G69085.1 | 59.322 | 59 | 24 | 0 | 167 | 225 | 50 | 108 | 3.79e-20 | 82.8 |
| Msa0939880 | AT4G23450.5 | 60.000 | 55 | 22 | 0 | 172 | 226 | 99 | 153 | 8.24e-18 | 77.8 |
| Msa0939880 | AT4G23450.1 | 60.000 | 55 | 22 | 0 | 172 | 226 | 99 | 153 | 8.24e-18 | 77.8 |
| Msa0939880 | AT4G23450.6 | 60.000 | 55 | 22 | 0 | 172 | 226 | 99 | 153 | 8.24e-18 | 77.8 |
| Msa0939880 | AT4G23450.4 | 60.000 | 55 | 22 | 0 | 172 | 226 | 99 | 153 | 8.24e-18 | 77.8 |
| Msa0939880 | AT4G23450.3 | 60.000 | 55 | 22 | 0 | 172 | 226 | 154 | 208 | 1.83e-17 | 78.2 |
| Msa0939880 | AT4G23450.2 | 60.000 | 55 | 22 | 0 | 172 | 226 | 154 | 208 | 1.83e-17 | 78.2 |
| Msa0939880 | AT4G14220.1 | 44.643 | 56 | 28 | 1 | 165 | 217 | 31 | 86 | 6.31e-11 | 61.6 |
Find 82 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTATACACAGGACTATT+TGG | 0.176229 | 6_3:+12098786 | None:intergenic |
| TTCAGTTCCTTCATCTCTTC+AGG | 0.214112 | 6_3:-12097549 | Msa0939880:CDS |
| CGACTTACACTTGATTGATT+TGG | 0.222926 | 6_3:-12094341 | Msa0939880:exon |
| TCAAAAGCTTGTTGGAACTA+TGG | 0.261843 | 6_3:-12098859 | Msa0939880:exon |
| ACCATCCCTCATTTGTAATA+TGG | 0.279945 | 6_3:+12099008 | None:intergenic |
| TAATAATTAGTGTAACTATT+TGG | 0.283631 | 6_3:+12093977 | None:intergenic |
| GACTTACACTTGATTGATTT+GGG | 0.295518 | 6_3:-12094340 | Msa0939880:exon |
| TCTGATGAATGTAAAGGTTC+TGG | 0.307707 | 6_3:+12097326 | None:intergenic |
| ACATCTGTGTCACTTCTTAG+AGG | 0.312224 | 6_3:+12097353 | None:intergenic |
| CCCCTTGTCTGAAACTCTTA+AGG | 0.329737 | 6_3:-12094165 | Msa0939880:three_prime_UTR |
| TTGTTGTTTATTGTAAGTTT+TGG | 0.364370 | 6_3:-12094077 | Msa0939880:three_prime_UTR |
| TATATTACCTTCCCACAAAC+TGG | 0.366566 | 6_3:+12094932 | None:intergenic |
| ACTGATCAATTAAAACTAGA+TGG | 0.398852 | 6_3:+12098898 | None:intergenic |
| CTTTACATTCATCAGAGAAA+TGG | 0.402047 | 6_3:-12097319 | Msa0939880:CDS |
| CCCTTGTCTGAAACTCTTAA+GGG | 0.408361 | 6_3:-12094164 | Msa0939880:three_prime_UTR |
| CAAAAGCTTGTTGGAACTAT+GGG | 0.427515 | 6_3:-12098858 | Msa0939880:exon |
| ATTTGTCCAACTTGTCTTGA+AGG | 0.435779 | 6_3:-12097176 | Msa0939880:intron |
| GCATCATAAGGTAAAGGCCT+TGG | 0.442137 | 6_3:+12097461 | None:intergenic |
| TCAGTTCCTTCATCTCTTCA+GGG | 0.444051 | 6_3:-12097548 | Msa0939880:CDS |
| GAGGAGAGTAGATAGATGAT+TGG | 0.445291 | 6_3:+12100100 | None:intergenic |
| TATCTTTGATTCATCTTCAC+AGG | 0.447010 | 6_3:+12097286 | None:intergenic |
| AACCGTGGCTCTGCATCATA+AGG | 0.452637 | 6_3:+12097449 | None:intergenic |
| ACTCACCAAACCAAAGCAAA+AGG | 0.455076 | 6_3:-12100229 | Msa0939880:five_prime_UTR |
| CATTTCTCTGATGAATGTAA+AGG | 0.460622 | 6_3:+12097320 | None:intergenic |
| GGGAGAGATCAAAAGCTTGT+TGG | 0.467400 | 6_3:-12098867 | Msa0939880:five_prime_UTR |
| GCAAAATATACAACTGGAGT+TGG | 0.468243 | 6_3:-12097230 | Msa0939880:CDS |
| GAATGAAATTGCAAAGGAAA+AGG | 0.474390 | 6_3:+12100124 | None:intergenic |
| AGTGACAACTGTCCAGTTTG+TGG | 0.475731 | 6_3:-12094944 | Msa0939880:CDS |
| TTTGATCCATATTACAAATG+AGG | 0.486988 | 6_3:-12099014 | Msa0939880:five_prime_UTR |
| CTCCTCAATTTCTCACTCGC+AGG | 0.492739 | 6_3:-12100083 | Msa0939880:intron |
| TCATCAGCAAAATATACAAC+TGG | 0.499758 | 6_3:-12097236 | Msa0939880:CDS |
| AATCTACCTTCAAGACAAGT+TGG | 0.500354 | 6_3:+12097170 | None:intergenic |
| TTGATTTGGGTGGTGCATAA+AGG | 0.503383 | 6_3:-12094327 | Msa0939880:three_prime_UTR |
| TTGATCCATATTACAAATGA+GGG | 0.503455 | 6_3:-12099013 | Msa0939880:five_prime_UTR |
| TTAATTGATCAGTTGAAGAG+TGG | 0.503519 | 6_3:-12098888 | Msa0939880:five_prime_UTR |
| TTGCCCGTGTCTAAGTTGCT+TGG | 0.505014 | 6_3:-12098763 | Msa0939880:CDS |
| GAAACTTCTGAAAACATAGT+TGG | 0.510619 | 6_3:-12098966 | Msa0939880:five_prime_UTR |
| ATCCAAATAGTCCTGTGTAT+AGG | 0.511943 | 6_3:-12098788 | Msa0939880:CDS |
| GGCTCTGCATCATAAGGTAA+AGG | 0.521861 | 6_3:+12097455 | None:intergenic |
| AAGTGATGCCGCAGAAGTCA+TGG | 0.526062 | 6_3:+12097517 | None:intergenic |
| GGAAGCAACAGAGGAAAGGA+AGG | 0.526579 | 6_3:-12094306 | Msa0939880:three_prime_UTR |
| CATAGTTGGTGTGGTGCTGT+TGG | 0.526659 | 6_3:-12098952 | Msa0939880:five_prime_UTR |
| AACGTGATGGACTAGTTTCA+AGG | 0.526803 | 6_3:-12097415 | Msa0939880:CDS |
| TAATTGATCAGTTGAAGAGT+GGG | 0.528326 | 6_3:-12098887 | Msa0939880:five_prime_UTR |
| GTGACAACTGTCCAGTTTGT+GGG | 0.530967 | 6_3:-12094943 | Msa0939880:CDS |
| CCCTTAAGAGTTTCAGACAA+GGG | 0.537289 | 6_3:+12094164 | None:intergenic |
| AACCTGCGAGTGAGAAATTG+AGG | 0.540432 | 6_3:+12100081 | None:intergenic |
| TGGACTCATTTATGCATCCT+CGG | 0.544948 | 6_3:-12097210 | Msa0939880:CDS |
| CTCACCAAACCAAAGCAAAA+GGG | 0.546680 | 6_3:-12100228 | Msa0939880:five_prime_UTR |
| TCATAAGGTAAAGGCCTTGG+AGG | 0.549391 | 6_3:+12097464 | None:intergenic |
| ATGCATCAATATTTCGTAGA+GGG | 0.550279 | 6_3:-12097580 | Msa0939880:CDS |
| CCTTAAGAGTTTCAGACAAG+GGG | 0.555281 | 6_3:+12094165 | None:intergenic |
| CAGTTCCTTCATCTCTTCAG+GGG | 0.556877 | 6_3:-12097547 | Msa0939880:CDS |
| GCTGTCCCCTGAAGAGATGA+AGG | 0.557025 | 6_3:+12097542 | None:intergenic |
| ACCTTGGTTGCATCTACGAG+TGG | 0.557512 | 6_3:-12094976 | Msa0939880:CDS |
| TTTGGTTTGGTGAGTGAAAG+TGG | 0.563160 | 6_3:+12100237 | None:intergenic |
| ATTGCAGAACTCATGAGACT+TGG | 0.568551 | 6_3:+12094048 | None:intergenic |
| ACATGTACCGTTCTCCTCCA+AGG | 0.576386 | 6_3:-12097478 | Msa0939880:CDS |
| TACCTTATGATGCAGAGCCA+CGG | 0.579285 | 6_3:-12097451 | Msa0939880:CDS |
| ATTGGAGAATGAAATTGCAA+AGG | 0.584669 | 6_3:+12100118 | None:intergenic |
| TGGTTGCATCTACGAGTGGA+TGG | 0.589440 | 6_3:-12094972 | Msa0939880:CDS |
| TAAAGGAAGCAACAGAGGAA+AGG | 0.594582 | 6_3:-12094310 | Msa0939880:three_prime_UTR |
| GAACCAAGCAACTTAGACAC+GGG | 0.598834 | 6_3:+12098760 | None:intergenic |
| ACAAATATCCTCGTCTTCCG+AGG | 0.610894 | 6_3:+12097193 | None:intergenic |
| TTACACTTGATTGATTTGGG+TGG | 0.615338 | 6_3:-12094337 | Msa0939880:exon |
| CTAGTCCATCACGTTGCGAG+CGG | 0.617697 | 6_3:+12097423 | None:intergenic |
| GTAAAGGCCTTGGAGGAGAA+CGG | 0.618228 | 6_3:+12097471 | None:intergenic |
| TGCATCAATATTTCGTAGAG+GGG | 0.621795 | 6_3:-12097579 | Msa0939880:CDS |
| TCTAAGAAGTGACACAGATG+TGG | 0.625154 | 6_3:-12097351 | Msa0939880:CDS |
| TTATGCATCCTCGGAAGACG+AGG | 0.640796 | 6_3:-12097201 | Msa0939880:CDS |
| TCCATATTACAAATGAGGGA+TGG | 0.646099 | 6_3:-12099009 | Msa0939880:five_prime_UTR |
| CACGGGCAATTCCTATACAC+AGG | 0.646951 | 6_3:+12098777 | None:intergenic |
| TTCTGAAAACATAGTTGGTG+TGG | 0.648937 | 6_3:-12098961 | Msa0939880:five_prime_UTR |
| TCCCTTAAGAGTTTCAGACA+AGG | 0.654131 | 6_3:+12094163 | None:intergenic |
| TATGCATCAATATTTCGTAG+AGG | 0.662857 | 6_3:-12097581 | Msa0939880:CDS |
| CAACTGTCCAGTTTGTGGGA+AGG | 0.663024 | 6_3:-12094939 | Msa0939880:intron |
| TCCACTCGTAGATGCAACCA+AGG | 0.664231 | 6_3:+12094975 | None:intergenic |
| GTGCATAAAGGAAGCAACAG+AGG | 0.668323 | 6_3:-12094315 | Msa0939880:three_prime_UTR |
| TGAACCAAGCAACTTAGACA+CGG | 0.668627 | 6_3:+12098759 | None:intergenic |
| ACAAAGCAATAATAGTACCA+TGG | 0.670922 | 6_3:+12094096 | None:intergenic |
| GACAGCGTCCATGACTTCTG+CGG | 0.673329 | 6_3:-12097525 | Msa0939880:CDS |
| ACTTTGTCAATGCAGCACCA+TGG | 0.706501 | 6_3:-12094113 | Msa0939880:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTTAATTAAATTATTCAA+AGG | + | chr6_3:12094541-12094560 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTAATTATTTTG+GGG | - | chr6_3:12095794-12095813 | Msa0939880:intron | 10.0% |
| !! | ATAATTTGAAAATTTACATT+TGG | - | chr6_3:12095935-12095954 | Msa0939880:intron | 10.0% |
| !!! | AAATCAAATTTTCCAAAATT+TGG | - | chr6_3:12094455-12094474 | Msa0939880:intron | 15.0% |
| !!! | AATCTAATTTTAATACACTT+AGG | - | chr6_3:12094596-12094615 | Msa0939880:intron | 15.0% |
| !! | ATAAAATACTTATGTTTATG+TGG | - | chr6_3:12094938-12094957 | Msa0939880:intron | 15.0% |
| !! | AAAAATGATAACATAAACTT+TGG | + | chr6_3:12094966-12094985 | None:intergenic | 15.0% |
| !!! | TCTACTATATTAAGATTTTT+AGG | - | chr6_3:12098609-12098628 | Msa0939880:intron | 15.0% |
| !!! | GATTTAAATTTTCAATCAAA+CGG | - | chr6_3:12099639-12099658 | Msa0939880:intron | 15.0% |
| !! | AGTTATATAAAATATGTATG+TGG | - | chr6_3:12099664-12099683 | Msa0939880:intron | 15.0% |
| !!! | GATTTTAATGAATGATATAT+TGG | - | chr6_3:12099798-12099817 | Msa0939880:intron | 15.0% |
| !!! | ATGTGTATATTTTTCTTTAT+AGG | - | chr6_3:12099839-12099858 | Msa0939880:intron | 15.0% |
| !!! | ATATTTTTCTTTATAGGAAA+TGG | - | chr6_3:12099845-12099864 | Msa0939880:intron | 15.0% |
| !! | TAATAATTAGTGTAACTATT+TGG | + | chr6_3:12100247-12100266 | None:intergenic | 15.0% |
| !!! | TTGAAAAATTTGGATTTTTG+CGG | + | chr6_3:12094075-12094094 | None:intergenic | 20.0% |
| !! | ATATCAATCAGCAATTAAAA+GGG | + | chr6_3:12094275-12094294 | None:intergenic | 20.0% |
| !! | ATTGATATGAAAATCTGAAA+TGG | - | chr6_3:12094287-12094306 | Msa0939880:three_prime_UTR | 20.0% |
| !!! | TTGATATGAAAATCTGAAAT+GGG | - | chr6_3:12094288-12094307 | Msa0939880:three_prime_UTR | 20.0% |
| !!! | TCAGAAACAAACTTTTAAAT+TGG | + | chr6_3:12094328-12094347 | None:intergenic | 20.0% |
| !! | TTTGTGCATTAAATATATAG+AGG | - | chr6_3:12095021-12095040 | Msa0939880:CDS | 20.0% |
| !! | TTGTCAAATAATTGTATGAA+TGG | - | chr6_3:12095083-12095102 | Msa0939880:intron | 20.0% |
| !!! | TTGTAATTTTGATACAATCA+AGG | + | chr6_3:12095629-12095648 | None:intergenic | 20.0% |
| !!! | ATCTTTTGTTAGTAATTTGA+TGG | - | chr6_3:12095666-12095685 | Msa0939880:intron | 20.0% |
| !!! | CAAATGTATTTTTCATTAGT+TGG | + | chr6_3:12095729-12095748 | None:intergenic | 20.0% |
| !! | ACTAATGAAAAATACATTTG+AGG | - | chr6_3:12095729-12095748 | Msa0939880:intron | 20.0% |
| !! | AATTATCTATCCATTAACAA+AGG | + | chr6_3:12095921-12095940 | None:intergenic | 20.0% |
| !!! | TTTGTTCTAAAATATTCTTC+AGG | + | chr6_3:12096542-12096561 | None:intergenic | 20.0% |
| !!! | CCATTTTATCATATTATTAC+TGG | + | chr6_3:12097216-12097235 | None:intergenic | 20.0% |
| !! | CCAGTAATAATATGATAAAA+TGG | - | chr6_3:12097213-12097232 | Msa0939880:CDS | 20.0% |
| !!! | AATTTTTTTGCTAAATGACT+TGG | - | chr6_3:12097391-12097410 | Msa0939880:CDS | 20.0% |
| !! | AAGAAGGATTTAGATTTAAA+TGG | + | chr6_3:12097450-12097469 | None:intergenic | 20.0% |
| !! | AAAATAATATTTCGTTACAC+AGG | + | chr6_3:12097794-12097813 | None:intergenic | 20.0% |
| !! | CCTAAAATAGATATGTTATT+GGG | + | chr6_3:12098203-12098222 | None:intergenic | 20.0% |
| !! | TATATCAACTTAAAGTTTCT+TGG | + | chr6_3:12098280-12098299 | None:intergenic | 20.0% |
| !!! | ATATTTTCCTTTTACTTGAA+TGG | - | chr6_3:12098345-12098364 | Msa0939880:intron | 20.0% |
| !! | TTGAATGGAAACTATTAAAA+AGG | - | chr6_3:12098360-12098379 | Msa0939880:intron | 20.0% |
| !!! | ATCAACTTCTTAACAATTTT+AGG | + | chr6_3:12098801-12098820 | None:intergenic | 20.0% |
| !! | TAAGGTATATTTCAATTGAA+TGG | - | chr6_3:12098824-12098843 | Msa0939880:CDS | 20.0% |
| !! | AAGGTATATTTCAATTGAAT+GGG | - | chr6_3:12098825-12098844 | Msa0939880:CDS | 20.0% |
| !! | ACAATATATACATCATAGAA+AGG | + | chr6_3:12099746-12099765 | None:intergenic | 20.0% |
| !! | TATGATGTATATATTGTTGT+TGG | - | chr6_3:12099749-12099768 | Msa0939880:intron | 20.0% |
| !!! | TGATATATTGGTTATGTATT+TGG | - | chr6_3:12099810-12099829 | Msa0939880:intron | 20.0% |
| !! | GAAAAAAAAAGTGATTTAGA+TGG | - | chr6_3:12100083-12100102 | Msa0939880:intron | 20.0% |
| !!! | TTGTTGTTTATTGTAAGTTT+TGG | - | chr6_3:12100144-12100163 | Msa0939880:five_prime_UTR | 20.0% |
| !!! | AATTTTGAAGCTGAAAATTC+AGG | + | chr6_3:12094243-12094262 | None:intergenic | 25.0% |
| ! | CATATCAATCAGCAATTAAA+AGG | + | chr6_3:12094276-12094295 | None:intergenic | 25.0% |
| !! | AGTCTATAAACTCCAAATTT+TGG | + | chr6_3:12094470-12094489 | None:intergenic | 25.0% |
| ! | AGTCAAACATGATTTATTGA+CGG | - | chr6_3:12094690-12094709 | Msa0939880:intron | 25.0% |
| ! | TGGTTTGAATAATGAACATT+TGG | - | chr6_3:12094859-12094878 | Msa0939880:intron | 25.0% |
| ! | ATATCACTTGTTTATTAGCT+TGG | + | chr6_3:12094908-12094927 | None:intergenic | 25.0% |
| !!! | GCTATTTTGATTTATTTTGC+AGG | - | chr6_3:12095165-12095184 | Msa0939880:intron | 25.0% |
| ! | TTTGATCCATATTACAAATG+AGG | - | chr6_3:12095207-12095226 | Msa0939880:intron | 25.0% |
| ! | TTGATCCATATTACAAATGA+GGG | - | chr6_3:12095208-12095227 | Msa0939880:intron | 25.0% |
| ! | ACTGATCAATTAAAACTAGA+TGG | + | chr6_3:12095326-12095345 | None:intergenic | 25.0% |
| ! | CAATGAAGTAAACAAAACAA+GGG | + | chr6_3:12095534-12095553 | None:intergenic | 25.0% |
| ! | TCAATGAAGTAAACAAAACA+AGG | + | chr6_3:12095535-12095554 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTTACTTCATTGA+AGG | - | chr6_3:12095535-12095554 | Msa0939880:intron | 25.0% |
| !! | TATAGCGGAATTTGAATAAA+TGG | - | chr6_3:12096276-12096295 | Msa0939880:intron | 25.0% |
| ! | CTTTGTAACAAATAGCATAT+TGG | + | chr6_3:12096315-12096334 | None:intergenic | 25.0% |
| ! | GCATTCATATTAAGATTTGT+TGG | - | chr6_3:12096509-12096528 | Msa0939880:intron | 25.0% |
| ! | ATTTACATCATCATGAAAGA+TGG | + | chr6_3:12096567-12096586 | None:intergenic | 25.0% |
| !! | TGAAATTTGAGATAGGAAAA+TGG | + | chr6_3:12096619-12096638 | None:intergenic | 25.0% |
| ! | AAAATTTATACTCCACCTAA+TGG | + | chr6_3:12097377-12097396 | None:intergenic | 25.0% |
| !! | GATGGTATTATTTTCTTAGA+CGG | + | chr6_3:12097598-12097617 | None:intergenic | 25.0% |
| ! | TTACAATGAATGGATATACA+AGG | + | chr6_3:12097681-12097700 | None:intergenic | 25.0% |
| ! | AACGTCAACTCTTAAAATTT+GGG | - | chr6_3:12097821-12097840 | Msa0939880:intron | 25.0% |
| !!! | CAATTTTATTTGGTTCACTT+GGG | + | chr6_3:12097853-12097872 | None:intergenic | 25.0% |
| !!! | TCAATTTTATTTGGTTCACT+TGG | + | chr6_3:12097854-12097873 | None:intergenic | 25.0% |
| !! | CCTTACAAGTCAATTTTATT+TGG | + | chr6_3:12097863-12097882 | None:intergenic | 25.0% |
| !!! | CCAAATAAAATTGACTTGTA+AGG | - | chr6_3:12097860-12097879 | Msa0939880:intron | 25.0% |
| !!! | TAAAATTGACTTGTAAGGTT+AGG | - | chr6_3:12097865-12097884 | Msa0939880:intron | 25.0% |
| !! | CCCAATAACATATCTATTTT+AGG | - | chr6_3:12098200-12098219 | Msa0939880:intron | 25.0% |
| ! | GCCTAAAATAGATATGTTAT+TGG | + | chr6_3:12098204-12098223 | None:intergenic | 25.0% |
| !!! | ATCTATTTTAGGCTTAAACT+AGG | - | chr6_3:12098211-12098230 | Msa0939880:intron | 25.0% |
| !!! | TTAAGTTGATATACTTACTC+TGG | - | chr6_3:12098287-12098306 | Msa0939880:intron | 25.0% |
| !!! | TAAGTTGATATACTTACTCT+GGG | - | chr6_3:12098288-12098307 | Msa0939880:intron | 25.0% |
| ! | GAAAATATGATGCACAATAT+AGG | + | chr6_3:12098333-12098352 | None:intergenic | 25.0% |
| ! | ATAGTTTCCATTCAAGTAAA+AGG | + | chr6_3:12098355-12098374 | None:intergenic | 25.0% |
| ! | AGAATTATTTAAGCCGTATA+AGG | - | chr6_3:12098673-12098692 | Msa0939880:intron | 25.0% |
| !! | ATCAATTTGAAGTCCTTATA+CGG | + | chr6_3:12098689-12098708 | None:intergenic | 25.0% |
| ! | AAAGAAAATATGATGCACAA+TGG | + | chr6_3:12098753-12098772 | None:intergenic | 25.0% |
| !! | TGTTAAGAAGTTGATCTTTA+AGG | - | chr6_3:12098806-12098825 | Msa0939880:CDS | 25.0% |
| ! | AGGTATATTTCAATTGAATG+GGG | - | chr6_3:12098826-12098845 | Msa0939880:CDS | 25.0% |
| ! | GATAATAAAACTTTGTGCAA+TGG | - | chr6_3:12098848-12098867 | Msa0939880:exon | 25.0% |
| !! | AACTGTCTTTTTATAAACTG+CGG | - | chr6_3:12098947-12098966 | Msa0939880:five_prime_UTR | 25.0% |
| ! | AACTAGACTATAAAAAAAGC+AGG | - | chr6_3:12099072-12099091 | Msa0939880:intron | 25.0% |
| !! | TGAAATCCATAAAATTTGCT+TGG | - | chr6_3:12099348-12099367 | Msa0939880:intron | 25.0% |
| ! | TTTGAACTGTTCTTAATAGA+AGG | + | chr6_3:12099399-12099418 | None:intergenic | 25.0% |
| ! | AATTACATCGGTATAACATT+TGG | + | chr6_3:12099719-12099738 | None:intergenic | 25.0% |
| ! | TAGAAAGGATCAAATTACAT+CGG | + | chr6_3:12099731-12099750 | None:intergenic | 25.0% |
| ! | AAAATCCAACTAAATCAATC+AGG | + | chr6_3:12099784-12099803 | None:intergenic | 25.0% |
| GGAAAAGGAGTTGAAAAATT+TGG | + | chr6_3:12094085-12094104 | None:intergenic | 30.0% | |
| GAATGAAATTGCAAAGGAAA+AGG | + | chr6_3:12094100-12094119 | None:intergenic | 30.0% | |
| ATTGGAGAATGAAATTGCAA+AGG | + | chr6_3:12094106-12094125 | None:intergenic | 30.0% | |
| ! | ATGACATAGCTTTTATGTGA+AGG | - | chr6_3:12094430-12094449 | Msa0939880:intron | 30.0% |
| ATCACAACTAATTGTGTGTA+CGG | - | chr6_3:12094661-12094680 | Msa0939880:intron | 30.0% | |
| CTTTACAGTGACAATGTATA+TGG | - | chr6_3:12094723-12094742 | Msa0939880:intron | 30.0% | |
| ! | CAACTATGACAGATTTTAGA+AGG | + | chr6_3:12094841-12094860 | None:intergenic | 30.0% |
| !! | CTTCTAAAATCTGTCATAGT+TGG | - | chr6_3:12094839-12094858 | Msa0939880:intron | 30.0% |
| ! | GAAACTTCTGAAAACATAGT+TGG | - | chr6_3:12095255-12095274 | Msa0939880:intron | 30.0% |
| TTAATTGATCAGTTGAAGAG+TGG | - | chr6_3:12095333-12095352 | Msa0939880:intron | 30.0% | |
| TAATTGATCAGTTGAAGAGT+GGG | - | chr6_3:12095334-12095353 | Msa0939880:intron | 30.0% | |
| AGTAAATACCAAAATGTGTG+AGG | - | chr6_3:12095588-12095607 | Msa0939880:intron | 30.0% | |
| TGTGCAACAAACACAAATAT+CGG | + | chr6_3:12095852-12095871 | None:intergenic | 30.0% | |
| ! | TCGAGATGTTTTTCTTTTGT+GGG | + | chr6_3:12096209-12096228 | None:intergenic | 30.0% |
| ! | TTCGAGATGTTTTTCTTTTG+TGG | + | chr6_3:12096210-12096229 | None:intergenic | 30.0% |
| TGTACTCTGTTGTCAAATAA+TGG | - | chr6_3:12096236-12096255 | Msa0939880:intron | 30.0% | |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr6_3:12096328-12096347 | Msa0939880:intron | 30.0% |
| GCATGTACTAACCTATTATT+TGG | - | chr6_3:12096421-12096440 | Msa0939880:intron | 30.0% | |
| TGTGAATCTATGTTTCTTGA+TGG | - | chr6_3:12096466-12096485 | Msa0939880:intron | 30.0% | |
| AATATGAATGCCGATCAATA+AGG | + | chr6_3:12096500-12096519 | None:intergenic | 30.0% | |
| ! | TGCATACTGAAATTTGAGAT+AGG | + | chr6_3:12096626-12096645 | None:intergenic | 30.0% |
| TATGCATCAATATTTCGTAG+AGG | - | chr6_3:12096640-12096659 | Msa0939880:intron | 30.0% | |
| ATGCATCAATATTTCGTAGA+GGG | - | chr6_3:12096641-12096660 | Msa0939880:intron | 30.0% | |
| CATTTCTCTGATGAATGTAA+AGG | + | chr6_3:12096904-12096923 | None:intergenic | 30.0% | |
| CTTTACATTCATCAGAGAAA+TGG | - | chr6_3:12096902-12096921 | Msa0939880:intron | 30.0% | |
| TATCTTTGATTCATCTTCAC+AGG | + | chr6_3:12096938-12096957 | None:intergenic | 30.0% | |
| !! | TGCTGATGAAAGTTTTAATG+CGG | + | chr6_3:12096974-12096993 | None:intergenic | 30.0% |
| TCATCAGCAAAATATACAAC+TGG | - | chr6_3:12096985-12097004 | Msa0939880:intron | 30.0% | |
| ATTTAAGTCCCAGTATCAAA+GGG | + | chr6_3:12097117-12097136 | None:intergenic | 30.0% | |
| ! | TACACTCTACAGTTTTTGTT+GGG | - | chr6_3:12097482-12097501 | Msa0939880:CDS | 30.0% |
| ! | AAGAATGGTAGTGAAAAAGT+TGG | + | chr6_3:12097520-12097539 | None:intergenic | 30.0% |
| GGAAGAAAAGTAGATAAGAA+TGG | + | chr6_3:12097535-12097554 | None:intergenic | 30.0% | |
| !! | TTCTTATCTACTTTTCTTCC+CGG | - | chr6_3:12097535-12097554 | Msa0939880:CDS | 30.0% |
| ! | AATACCATCTTTTCCACAAT+AGG | - | chr6_3:12097609-12097628 | Msa0939880:intron | 30.0% |
| AAAACCTATTGTGGAAAAGA+TGG | + | chr6_3:12097616-12097635 | None:intergenic | 30.0% | |
| GGAGATAGATATTAAAGAGT+TGG | + | chr6_3:12097642-12097661 | None:intergenic | 30.0% | |
| !! | CAAGGCAAAATGGATTAAAA+TGG | + | chr6_3:12097663-12097682 | None:intergenic | 30.0% |
| AATGGATATACAAGGCAAAA+TGG | + | chr6_3:12097673-12097692 | None:intergenic | 30.0% | |
| AGTAAACTAAATGATGCAGT+GGG | + | chr6_3:12097711-12097730 | None:intergenic | 30.0% | |
| AAGTAAACTAAATGATGCAG+TGG | + | chr6_3:12097712-12097731 | None:intergenic | 30.0% | |
| AATGCAAAGAGATAAAAAGC+TGG | + | chr6_3:12097744-12097763 | None:intergenic | 30.0% | |
| !! | AATTTTAAGAGTTGACGTTC+AGG | + | chr6_3:12097820-12097839 | None:intergenic | 30.0% |
| GAACGTCAACTCTTAAAATT+TGG | - | chr6_3:12097820-12097839 | Msa0939880:intron | 30.0% | |
| ACGTCAACTCTTAAAATTTG+GGG | - | chr6_3:12097822-12097841 | Msa0939880:intron | 30.0% | |
| AACTCTTAAAATTTGGGGAA+GGG | - | chr6_3:12097827-12097846 | Msa0939880:intron | 30.0% | |
| !! | GAGTTTTATGATTACCTCTT+AGG | - | chr6_3:12097895-12097914 | Msa0939880:intron | 30.0% |
| AATTAGAGATATTGCCTAAG+AGG | + | chr6_3:12097912-12097931 | None:intergenic | 30.0% | |
| AACTTAAAGTTTCTTGGTAC+AGG | + | chr6_3:12098274-12098293 | None:intergenic | 30.0% | |
| AACTATTAAAAAGGTGAGCT+AGG | - | chr6_3:12098369-12098388 | Msa0939880:intron | 30.0% | |
| ACTATTAAAAAGGTGAGCTA+GGG | - | chr6_3:12098370-12098389 | Msa0939880:intron | 30.0% | |
| CGATTTAATATGGTTCCATT+AGG | + | chr6_3:12098396-12098415 | None:intergenic | 30.0% | |
| ! | CCTAACAAGTCGATTTAATA+TGG | + | chr6_3:12098406-12098425 | None:intergenic | 30.0% |
| !! | CCATATTAAATCGACTTGTT+AGG | - | chr6_3:12098403-12098422 | Msa0939880:intron | 30.0% |
| !! | TTAAATCGACTTGTTAGGTT+AGG | - | chr6_3:12098408-12098427 | Msa0939880:intron | 30.0% |
| ! | CTCAATTTTATGATTGCCTT+AGG | - | chr6_3:12098436-12098455 | Msa0939880:intron | 30.0% |
| TCAATTATAGATATCGCCTA+AGG | + | chr6_3:12098455-12098474 | None:intergenic | 30.0% | |
| AGGCGATATCTATAATTGAT+TGG | - | chr6_3:12098456-12098475 | Msa0939880:intron | 30.0% | |
| GGCGATATCTATAATTGATT+GGG | - | chr6_3:12098457-12098476 | Msa0939880:intron | 30.0% | |
| ATAGAGCATGGACAATAATA+TGG | - | chr6_3:12098565-12098584 | Msa0939880:intron | 30.0% | |
| TAGAGCATGGACAATAATAT+GGG | - | chr6_3:12098566-12098585 | Msa0939880:intron | 30.0% | |
| TAATATGGGTAGCTCAATAA+TGG | - | chr6_3:12098580-12098599 | Msa0939880:intron | 30.0% | |
| GTTTCATTAGTTGATCTTGA+AGG | - | chr6_3:12098870-12098889 | Msa0939880:five_prime_UTR | 30.0% | |
| !! | CAAACAGATACAGTTGTTTT+GGG | + | chr6_3:12099098-12099117 | None:intergenic | 30.0% |
| !! | AAGATGCCATTGTTTTATTC+AGG | + | chr6_3:12099136-12099155 | None:intergenic | 30.0% |
| TGAATAAAACAATGGCATCT+TGG | - | chr6_3:12099135-12099154 | Msa0939880:intron | 30.0% | |
| ! | GAGCATTTTGTCATTATCTT+TGG | + | chr6_3:12099214-12099233 | None:intergenic | 30.0% |
| ! | ATGCTACCAAGCAAATTTTA+TGG | + | chr6_3:12099357-12099376 | None:intergenic | 30.0% |
| ! | GTATTCCTGATTGATTTAGT+TGG | - | chr6_3:12099776-12099795 | Msa0939880:intron | 30.0% |
| ! | GACTTACACTTGATTGATTT+GGG | - | chr6_3:12099881-12099900 | Msa0939880:intron | 30.0% |
| ACAAAGCAATAATAGTACCA+TGG | + | chr6_3:12100128-12100147 | None:intergenic | 30.0% | |
| ! | TCTTTCTTTCCCTTTTGCTT+TGG | + | chr6_3:12094005-12094024 | None:intergenic | 35.0% |
| TTGAAGCTGAAAATTCAGGT+GGG | + | chr6_3:12094239-12094258 | None:intergenic | 35.0% | |
| ! | TTTGAAGCTGAAAATTCAGG+TGG | + | chr6_3:12094240-12094259 | None:intergenic | 35.0% |
| ! | GCTTTGTACTATGATGATGT+TGG | - | chr6_3:12094399-12094418 | Msa0939880:intron | 35.0% |
| TCCATATTACAAATGAGGGA+TGG | - | chr6_3:12095212-12095231 | Msa0939880:intron | 35.0% | |
| ACCATCCCTCATTTGTAATA+TGG | + | chr6_3:12095216-12095235 | None:intergenic | 35.0% | |
| !! | ATGGTAGTGTTTTATGGATG+CGG | - | chr6_3:12095231-12095250 | Msa0939880:intron | 35.0% |
| ! | TTCTGAAAACATAGTTGGTG+TGG | - | chr6_3:12095260-12095279 | Msa0939880:intron | 35.0% |
| !! | TCAAAAGCTTGTTGGAACTA+TGG | - | chr6_3:12095362-12095381 | Msa0939880:intron | 35.0% |
| !! | CAAAAGCTTGTTGGAACTAT+GGG | - | chr6_3:12095363-12095382 | Msa0939880:intron | 35.0% |
| ATCCAAATAGTCCTGTGTAT+AGG | - | chr6_3:12095433-12095452 | Msa0939880:intron | 35.0% | |
| TTCCTATACACAGGACTATT+TGG | + | chr6_3:12095438-12095457 | None:intergenic | 35.0% | |
| ! | GGTTCAGAATCTTTTGAATG+TGG | - | chr6_3:12095479-12095498 | Msa0939880:intron | 35.0% |
| AAACAAAACAAGGGAGAGAA+TGG | + | chr6_3:12095525-12095544 | None:intergenic | 35.0% | |
| ! | TGATGGATCTAACTGACTAA+CGG | - | chr6_3:12095683-12095702 | Msa0939880:intron | 35.0% |
| ATGCCTCTAGTTAATCAGTT+TGG | + | chr6_3:12095756-12095775 | None:intergenic | 35.0% | |
| TATCGGCACATCAAATGTTT+AGG | + | chr6_3:12095835-12095854 | None:intergenic | 35.0% | |
| ! | ATTTGTGTTTGTTGCACATC+TGG | - | chr6_3:12095854-12095873 | Msa0939880:intron | 35.0% |
| ATCCATTAACAAAGGAACAG+TGG | + | chr6_3:12095913-12095932 | None:intergenic | 35.0% | |
| CCACTTGAAAAGTTGAGATT+AGG | + | chr6_3:12096031-12096050 | None:intergenic | 35.0% | |
| !! | CCTAATCTCAACTTTTCAAG+TGG | - | chr6_3:12096028-12096047 | Msa0939880:intron | 35.0% |
| !! | TTTTCTTTTGTGGGCTTGTT+AGG | + | chr6_3:12096200-12096219 | None:intergenic | 35.0% |
| ACATGCAATGTTGTTAATCG+TGG | + | chr6_3:12096407-12096426 | None:intergenic | 35.0% | |
| ACTAACCTATTATTTGGCCT+AGG | - | chr6_3:12096427-12096446 | Msa0939880:intron | 35.0% | |
| ! | CTTTTCCTAGGCCAAATAAT+AGG | + | chr6_3:12096435-12096454 | None:intergenic | 35.0% |
| GGTAAATCCACCTTATTGAT+CGG | - | chr6_3:12096487-12096506 | Msa0939880:intron | 35.0% | |
| TGCATCAATATTTCGTAGAG+GGG | - | chr6_3:12096642-12096661 | Msa0939880:intron | 35.0% | |
| TCTGATGAATGTAAAGGTTC+TGG | + | chr6_3:12096898-12096917 | None:intergenic | 35.0% | |
| !! | GTTTTAATGCGGACTTAGAA+CGG | + | chr6_3:12096963-12096982 | None:intergenic | 35.0% |
| GCAAAATATACAACTGGAGT+TGG | - | chr6_3:12096991-12097010 | Msa0939880:intron | 35.0% | |
| ATTTGTCCAACTTGTCTTGA+AGG | - | chr6_3:12097045-12097064 | Msa0939880:intron | 35.0% | |
| AATCTACCTTCAAGACAAGT+TGG | + | chr6_3:12097054-12097073 | None:intergenic | 35.0% | |
| ATTAGAAGACCCTTTGATAC+TGG | - | chr6_3:12097105-12097124 | Msa0939880:intron | 35.0% | |
| TTAGAAGACCCTTTGATACT+GGG | - | chr6_3:12097106-12097125 | Msa0939880:intron | 35.0% | |
| GATTTAAGTCCCAGTATCAA+AGG | + | chr6_3:12097118-12097137 | None:intergenic | 35.0% | |
| TGATTAAATGTAACCACGTG+TGG | - | chr6_3:12097239-12097258 | Msa0939880:CDS | 35.0% | |
| AGATAGTCAGTGAAAGATCT+TGG | - | chr6_3:12097319-12097338 | Msa0939880:CDS | 35.0% | |
| ATACAATCTTCCCTTCCATT+AGG | - | chr6_3:12097359-12097378 | Msa0939880:CDS | 35.0% | |
| TTATACTCCACCTAATGGAA+GGG | + | chr6_3:12097372-12097391 | None:intergenic | 35.0% | |
| TTTATACTCCACCTAATGGA+AGG | + | chr6_3:12097373-12097392 | None:intergenic | 35.0% | |
| TGTAGACTAAACGACTAAGA+AGG | + | chr6_3:12097466-12097485 | None:intergenic | 35.0% | |
| ! | CTACACTCTACAGTTTTTGT+TGG | - | chr6_3:12097481-12097500 | Msa0939880:CDS | 35.0% |
| !! | TCTTATCTACTTTTCTTCCC+GGG | - | chr6_3:12097536-12097555 | Msa0939880:CDS | 35.0% |
| ! | AGTTGGTGTAAAACCTATTG+TGG | + | chr6_3:12097625-12097644 | None:intergenic | 35.0% |
| GGGAACAAAGTTACAATGAA+TGG | + | chr6_3:12097691-12097710 | None:intergenic | 35.0% | |
| CAACTCTTAAAATTTGGGGA+AGG | - | chr6_3:12097826-12097845 | Msa0939880:intron | 35.0% | |
| AGAATCATGAGTCAACTCAT+TGG | + | chr6_3:12098079-12098098 | None:intergenic | 35.0% | |
| ! | ACCTCTTGAGCTAGATTTTA+GGG | + | chr6_3:12098237-12098256 | None:intergenic | 35.0% |
| GAAAATATGATGCACAATGG+AGG | + | chr6_3:12098750-12098769 | None:intergenic | 35.0% | |
| ! | TGTCTTTTTATAAACTGCGG+AGG | - | chr6_3:12098950-12098969 | Msa0939880:five_prime_UTR | 35.0% |
| ACTGCTCAGAAGATACAAAT+TGG | + | chr6_3:12098976-12098995 | None:intergenic | 35.0% | |
| GTAATCCTTGTAAACCCTTT+AGG | - | chr6_3:12098994-12099013 | Msa0939880:five_prime_UTR | 35.0% | |
| AACCCTTTAGGTGTCAAATT+TGG | - | chr6_3:12099006-12099025 | Msa0939880:five_prime_UTR | 35.0% | |
| ATGCTAAACTACAGGCTTAT+CGG | + | chr6_3:12099051-12099070 | None:intergenic | 35.0% | |
| ! | TCTAGTTCATGCTAAACTAC+AGG | + | chr6_3:12099059-12099078 | None:intergenic | 35.0% |
| ! | CCAAACAGATACAGTTGTTT+TGG | + | chr6_3:12099099-12099118 | None:intergenic | 35.0% |
| CCAAAACAACTGTATCTGTT+TGG | - | chr6_3:12099096-12099115 | Msa0939880:intron | 35.0% | |
| !! | TTGTTTTATTCAGGCTACGT+GGG | + | chr6_3:12099127-12099146 | None:intergenic | 35.0% |
| !! | ATTGTTTTATTCAGGCTACG+TGG | + | chr6_3:12099128-12099147 | None:intergenic | 35.0% |
| ACGTAGCCTGAATAAAACAA+TGG | - | chr6_3:12099127-12099146 | Msa0939880:intron | 35.0% | |
| TATATTACCTTCCCACAAAC+TGG | + | chr6_3:12099292-12099311 | None:intergenic | 35.0% | |
| GATTTCACTGCAAGCATATT+TGG | + | chr6_3:12099335-12099354 | None:intergenic | 35.0% | |
| CGACTTACACTTGATTGATT+TGG | - | chr6_3:12099880-12099899 | Msa0939880:intron | 35.0% | |
| !! | TTACACTTGATTGATTTGGG+TGG | - | chr6_3:12099884-12099903 | Msa0939880:intron | 35.0% |
| !! | TTTGGTTTGGTGAGTGAAAG+TGG | + | chr6_3:12093987-12094006 | None:intergenic | 40.0% |
| ACTCACCAAACCAAAGCAAA+AGG | - | chr6_3:12093992-12094011 | Msa0939880:three_prime_UTR | 40.0% | |
| CTCACCAAACCAAAGCAAAA+GGG | - | chr6_3:12093993-12094012 | Msa0939880:three_prime_UTR | 40.0% | |
| ! | CTTTCCCTTTTGCTTTGGTT+TGG | + | chr6_3:12094000-12094019 | None:intergenic | 40.0% |
| GAGGAGAGTAGATAGATGAT+TGG | + | chr6_3:12094124-12094143 | None:intergenic | 40.0% | |
| !! | TGAGGGATGGTAGTGTTTTA+TGG | - | chr6_3:12095225-12095244 | Msa0939880:intron | 40.0% |
| TGAACCAAGCAACTTAGACA+CGG | + | chr6_3:12095465-12095484 | None:intergenic | 40.0% | |
| ! | CTACATTGCCTCACACATTT+TGG | + | chr6_3:12095599-12095618 | None:intergenic | 40.0% |
| GGACCAAACTGATTAACTAG+AGG | - | chr6_3:12095750-12095769 | Msa0939880:intron | 40.0% | |
| CTCCACTGTTCCTTTGTTAA+TGG | - | chr6_3:12095908-12095927 | Msa0939880:intron | 40.0% | |
| AGGACACATTTCAAGACTAG+TGG | + | chr6_3:12096011-12096030 | None:intergenic | 40.0% | |
| !! | AAAGTGTTGTCAAATAGCGG+CGG | - | chr6_3:12096331-12096350 | Msa0939880:intron | 40.0% |
| ATGTTGTTAATCGTGGATCG+TGG | + | chr6_3:12096400-12096419 | None:intergenic | 40.0% | |
| !! | AGATGCAGAGTACTTTTCCT+AGG | + | chr6_3:12096447-12096466 | None:intergenic | 40.0% |
| ATGAATGCCGATCAATAAGG+TGG | + | chr6_3:12096497-12096516 | None:intergenic | 40.0% | |
| TTCAGTTCCTTCATCTCTTC+AGG | - | chr6_3:12096672-12096691 | Msa0939880:intron | 40.0% | |
| TCAGTTCCTTCATCTCTTCA+GGG | - | chr6_3:12096673-12096692 | Msa0939880:intron | 40.0% | |
| !! | AACGTGATGGACTAGTTTCA+AGG | - | chr6_3:12096806-12096825 | Msa0939880:intron | 40.0% |
| !! | ACATCTGTGTCACTTCTTAG+AGG | + | chr6_3:12096871-12096890 | None:intergenic | 40.0% |
| TCTAAGAAGTGACACAGATG+TGG | - | chr6_3:12096870-12096889 | Msa0939880:intron | 40.0% | |
| TGGACTCATTTATGCATCCT+CGG | - | chr6_3:12097011-12097030 | Msa0939880:intron | 40.0% | |
| TACTGGGACTTAAATCAGCA+TGG | - | chr6_3:12097122-12097141 | Msa0939880:intron | 40.0% | |
| GGACTTAAATCAGCATGGTT+TGG | - | chr6_3:12097127-12097146 | Msa0939880:intron | 40.0% | |
| CTCAGTGATTTATGAAGCAC+AGG | - | chr6_3:12097162-12097181 | Msa0939880:intron | 40.0% | |
| TGACACTTCAGAACAAAACC+TGG | + | chr6_3:12097294-12097313 | None:intergenic | 40.0% | |
| GTTTGAACATGTCACATGTG+CGG | + | chr6_3:12097576-12097595 | None:intergenic | 40.0% | |
| GTCTGGTATTAAGCATGAAG+GGG | + | chr6_3:12097954-12097973 | None:intergenic | 40.0% | |
| CGTCTGGTATTAAGCATGAA+GGG | + | chr6_3:12097955-12097974 | None:intergenic | 40.0% | |
| ACGTCTGGTATTAAGCATGA+AGG | + | chr6_3:12097956-12097975 | None:intergenic | 40.0% | |
| GATCTCGATTCTGACTATCT+TGG | + | chr6_3:12097991-12098010 | None:intergenic | 40.0% | |
| GGTCACAAGATCATAAATCG+CGG | - | chr6_3:12098030-12098049 | Msa0939880:intron | 40.0% | |
| GTCACAAGATCATAAATCGC+GGG | - | chr6_3:12098031-12098050 | Msa0939880:intron | 40.0% | |
| ACTCATGATTCTGACTACCA+TGG | - | chr6_3:12098087-12098106 | Msa0939880:intron | 40.0% | |
| ATCTAACGCACGGACAAATA+TGG | - | chr6_3:12098173-12098192 | Msa0939880:intron | 40.0% | |
| TCTAACGCACGGACAAATAT+GGG | - | chr6_3:12098174-12098193 | Msa0939880:intron | 40.0% | |
| ! | CACCTCTTGAGCTAGATTTT+AGG | + | chr6_3:12098238-12098257 | None:intergenic | 40.0% |
| AGGACTGAACATATAGAGCA+TGG | - | chr6_3:12098553-12098572 | Msa0939880:intron | 40.0% | |
| TGACACCTAAAGGGTTTACA+AGG | + | chr6_3:12099002-12099021 | None:intergenic | 40.0% | |
| GGCCAAATTTGACACCTAAA+GGG | + | chr6_3:12099011-12099030 | None:intergenic | 40.0% | |
| TGCTAAACTACAGGCTTATC+GGG | + | chr6_3:12099050-12099069 | None:intergenic | 40.0% | |
| ! | TGCTCTCATCATTTTCACCT+TGG | - | chr6_3:12099229-12099248 | Msa0939880:intron | 40.0% |
| !! | TTGATTTGGGTGGTGCATAA+AGG | - | chr6_3:12099894-12099913 | Msa0939880:intron | 40.0% |
| TAAAGGAAGCAACAGAGGAA+AGG | - | chr6_3:12099911-12099930 | Msa0939880:intron | 40.0% | |
| CCTTAAGAGTTTCAGACAAG+GGG | + | chr6_3:12100059-12100078 | None:intergenic | 40.0% | |
| CCCTTAAGAGTTTCAGACAA+GGG | + | chr6_3:12100060-12100079 | None:intergenic | 40.0% | |
| ! | CCCTTGTCTGAAACTCTTAA+GGG | - | chr6_3:12100057-12100076 | Msa0939880:intron | 40.0% |
| TCCCTTAAGAGTTTCAGACA+AGG | + | chr6_3:12100061-12100080 | None:intergenic | 40.0% | |
| ATTGCAGAACTCATGAGACT+TGG | + | chr6_3:12100176-12100195 | None:intergenic | 40.0% | |
| AACCTGCGAGTGAGAAATTG+AGG | + | chr6_3:12094143-12094162 | None:intergenic | 45.0% | |
| GACTGAGCACATGATACTGT+CGG | - | chr6_3:12094486-12094505 | Msa0939880:intron | 45.0% | |
| TGGTGCATTGCTCAGATATG+TGG | - | chr6_3:12094879-12094898 | Msa0939880:intron | 45.0% | |
| GGGAGAGATCAAAAGCTTGT+TGG | - | chr6_3:12095354-12095373 | Msa0939880:intron | 45.0% | |
| GAACCAAGCAACTTAGACAC+GGG | + | chr6_3:12095464-12095483 | None:intergenic | 45.0% | |
| ACAAGGGAGAGAATGGAAAG+AGG | + | chr6_3:12095518-12095537 | None:intergenic | 45.0% | |
| TGGATCTAACTGACTAACGG+AGG | - | chr6_3:12095686-12095705 | Msa0939880:intron | 45.0% | |
| !! | ACATCTGGCTCTTGTAGCAT+TGG | - | chr6_3:12095869-12095888 | Msa0939880:intron | 45.0% |
| GTAGCAGCGCTATAGTATAG+CGG | - | chr6_3:12096261-12096280 | Msa0939880:intron | 45.0% | |
| TCGTGGATCGTGGAAAATAG+CGG | + | chr6_3:12096390-12096409 | None:intergenic | 45.0% | |
| CAGTTCCTTCATCTCTTCAG+GGG | - | chr6_3:12096674-12096693 | Msa0939880:intron | 45.0% | |
| TCATAAGGTAAAGGCCTTGG+AGG | + | chr6_3:12096760-12096779 | None:intergenic | 45.0% | |
| GCATCATAAGGTAAAGGCCT+TGG | + | chr6_3:12096763-12096782 | None:intergenic | 45.0% | |
| GGCTCTGCATCATAAGGTAA+AGG | + | chr6_3:12096769-12096788 | None:intergenic | 45.0% | |
| TACCTTATGATGCAGAGCCA+CGG | - | chr6_3:12096770-12096789 | Msa0939880:intron | 45.0% | |
| ACAAATATCCTCGTCTTCCG+AGG | + | chr6_3:12097031-12097050 | None:intergenic | 45.0% | |
| CAATCTTCCCTTCCATTAGG+TGG | - | chr6_3:12097362-12097381 | Msa0939880:CDS | 45.0% | |
| CATGATTCTGACTACCATGG+TGG | - | chr6_3:12098090-12098109 | Msa0939880:intron | 45.0% | |
| TCACTCACATTTGTCCACCA+TGG | + | chr6_3:12098107-12098126 | None:intergenic | 45.0% | |
| TAGATGTCCACTCTTGAGCA+TGG | + | chr6_3:12098158-12098177 | None:intergenic | 45.0% | |
| AAGAGTGGACATCTAACGCA+CGG | - | chr6_3:12098163-12098182 | Msa0939880:intron | 45.0% | |
| ! | GCCCTAAAATCTAGCTCAAG+AGG | - | chr6_3:12098233-12098252 | Msa0939880:intron | 45.0% |
| AGTTTCTTGGTACAGGCTTG+AGG | + | chr6_3:12098267-12098286 | None:intergenic | 45.0% | |
| TGAACACACCTCTCATGCTT+AGG | - | chr6_3:12098484-12098503 | Msa0939880:intron | 45.0% | |
| CATCTAGTCCTAAGCATGAG+AGG | + | chr6_3:12098495-12098514 | None:intergenic | 45.0% | |
| !!! | CTAGCTTTTGGGGCTTAGTT+AGG | + | chr6_3:12098642-12098661 | None:intergenic | 45.0% |
| !!! | ACCTCTTGAGCTAGCTTTTG+GGG | + | chr6_3:12098652-12098671 | None:intergenic | 45.0% |
| !!! | CACCTCTTGAGCTAGCTTTT+GGG | + | chr6_3:12098653-12098672 | None:intergenic | 45.0% |
| !!! | TCACCTCTTGAGCTAGCTTT+TGG | + | chr6_3:12098654-12098673 | None:intergenic | 45.0% |
| GGGCCAAATTTGACACCTAA+AGG | + | chr6_3:12099012-12099031 | None:intergenic | 45.0% | |
| TCAAATTTGGCCCTGACCAA+TGG | - | chr6_3:12099019-12099038 | Msa0939880:five_prime_UTR | 45.0% | |
| TTTATTCAGGCTACGTGGGT+CGG | + | chr6_3:12099123-12099142 | None:intergenic | 45.0% | |
| AGTGACAACTGTCCAGTTTG+TGG | - | chr6_3:12099277-12099296 | Msa0939880:intron | 45.0% | |
| GTGACAACTGTCCAGTTTGT+GGG | - | chr6_3:12099278-12099297 | Msa0939880:intron | 45.0% | |
| GTGCATAAAGGAAGCAACAG+AGG | - | chr6_3:12099906-12099925 | Msa0939880:intron | 45.0% | |
| ! | CCCCTTGTCTGAAACTCTTA+AGG | - | chr6_3:12100056-12100075 | Msa0939880:intron | 45.0% |
| ACTTTGTCAATGCAGCACCA+TGG | - | chr6_3:12100108-12100127 | Msa0939880:five_prime_UTR | 45.0% | |
| !! | ATTTAATTAAATTATTCAAA+GGG | + | chr6_3:12094540-12094559 | None:intergenic | 5.0% |
| !!! | ATTTTGAATTTTAATTATTT+TGG | - | chr6_3:12095792-12095811 | Msa0939880:intron | 5.0% |
| !!! | TTTTGAATTTTAATTATTTT+GGG | - | chr6_3:12095793-12095812 | Msa0939880:intron | 5.0% |
| CTCCTCAATTTCTCACTCGC+AGG | - | chr6_3:12094138-12094157 | Msa0939880:three_prime_UTR | 50.0% | |
| !! | CATAGTTGGTGTGGTGCTGT+TGG | - | chr6_3:12095269-12095288 | Msa0939880:intron | 50.0% |
| CACGGGCAATTCCTATACAC+AGG | + | chr6_3:12095447-12095466 | None:intergenic | 50.0% | |
| TTGCCCGTGTCTAAGTTGCT+TGG | - | chr6_3:12095458-12095477 | Msa0939880:intron | 50.0% | |
| GGTATTGCACTGTGGCAAGT+CGG | - | chr6_3:12096352-12096371 | Msa0939880:intron | 50.0% | |
| AAGTGATGCCGCAGAAGTCA+TGG | + | chr6_3:12096707-12096726 | None:intergenic | 50.0% | |
| ACATGTACCGTTCTCCTCCA+AGG | - | chr6_3:12096743-12096762 | Msa0939880:intron | 50.0% | |
| GTAAAGGCCTTGGAGGAGAA+CGG | + | chr6_3:12096753-12096772 | None:intergenic | 50.0% | |
| ! | AACCGTGGCTCTGCATCATA+AGG | + | chr6_3:12096775-12096794 | None:intergenic | 50.0% |
| ! | TTTTTCCGCTCGCAACGTGA+TGG | - | chr6_3:12096793-12096812 | Msa0939880:intron | 50.0% |
| TTATGCATCCTCGGAAGACG+AGG | - | chr6_3:12097020-12097039 | Msa0939880:intron | 50.0% | |
| GGTCTGTGTCGTGTTAGTGT+TGG | - | chr6_3:12097260-12097279 | Msa0939880:CDS | 50.0% | |
| ! | GTCGTGTTAGTGTTGGACAC+TGG | - | chr6_3:12097267-12097286 | Msa0939880:CDS | 50.0% |
| ! | TTAGTGTTGGACACTGGACC+AGG | - | chr6_3:12097273-12097292 | Msa0939880:CDS | 50.0% |
| ATCGAGATCCTACCCGAGAT+CGG | - | chr6_3:12098002-12098021 | Msa0939880:intron | 50.0% | |
| TGTCCACTCTTGAGCATGGA+GGG | + | chr6_3:12098154-12098173 | None:intergenic | 50.0% | |
| ATGTCCACTCTTGAGCATGG+AGG | + | chr6_3:12098155-12098174 | None:intergenic | 50.0% | |
| AAAGGTGAGCTAGGGCCTAA+TGG | - | chr6_3:12098378-12098397 | Msa0939880:intron | 50.0% | |
| AACGAATGTACCCCATGCTC+AGG | - | chr6_3:12098526-12098545 | Msa0939880:intron | 50.0% | |
| AACTACAGGCTTATCGGGCT+AGG | + | chr6_3:12099045-12099064 | None:intergenic | 50.0% | |
| ACCTTGGTTGCATCTACGAG+TGG | - | chr6_3:12099245-12099264 | Msa0939880:intron | 50.0% | |
| TCCACTCGTAGATGCAACCA+AGG | + | chr6_3:12099249-12099268 | None:intergenic | 50.0% | |
| TGGTTGCATCTACGAGTGGA+TGG | - | chr6_3:12099249-12099268 | Msa0939880:intron | 50.0% | |
| CAACTGTCCAGTTTGTGGGA+AGG | - | chr6_3:12099282-12099301 | Msa0939880:intron | 50.0% | |
| GGAAGCAACAGAGGAAAGGA+AGG | - | chr6_3:12099915-12099934 | Msa0939880:intron | 50.0% | |
| GACTAACGGAGGACAACTCG+AGG | - | chr6_3:12095697-12095716 | Msa0939880:intron | 55.0% | |
| ATAGCGGCGGTATTGCACTG+TGG | - | chr6_3:12096344-12096363 | Msa0939880:intron | 55.0% | |
| GCTGTCCCCTGAAGAGATGA+AGG | + | chr6_3:12096682-12096701 | None:intergenic | 55.0% | |
| GACAGCGTCCATGACTTCTG+CGG | - | chr6_3:12096696-12096715 | Msa0939880:intron | 55.0% | |
| CTAGTCCATCACGTTGCGAG+CGG | + | chr6_3:12096801-12096820 | None:intergenic | 55.0% | |
| AACACGACACAGACCACACG+TGG | + | chr6_3:12097255-12097274 | None:intergenic | 55.0% | |
| TCGAGATCCTACCCGAGATC+GGG | - | chr6_3:12098003-12098022 | Msa0939880:intron | 55.0% | |
| ATCCTACCCGAGATCGGGAA+GGG | - | chr6_3:12098008-12098027 | Msa0939880:intron | 55.0% | |
| TTGTGACCCCTTCCCGATCT+CGG | + | chr6_3:12098018-12098037 | None:intergenic | 55.0% | |
| ACACCCTCCATGCTCAAGAG+TGG | - | chr6_3:12098148-12098167 | Msa0939880:intron | 55.0% | |
| AGTCCTGACTCCTGAGCATG+GGG | + | chr6_3:12098539-12098558 | None:intergenic | 55.0% | |
| CAGTCCTGACTCCTGAGCAT+GGG | + | chr6_3:12098540-12098559 | None:intergenic | 55.0% | |
| TCAGTCCTGACTCCTGAGCA+TGG | + | chr6_3:12098541-12098560 | None:intergenic | 55.0% | |
| GCCCCAAAAGCTAGCTCAAG+AGG | - | chr6_3:12098648-12098667 | Msa0939880:intron | 55.0% | |
| CGTTGCGAGCGGAAAAACCG+TGG | + | chr6_3:12096790-12096809 | None:intergenic | 60.0% | |
| CGGTAACGACAGAGAAGCCC+GGG | + | chr6_3:12097556-12097575 | None:intergenic | 60.0% | |
| GCGGTAACGACAGAGAAGCC+CGG | + | chr6_3:12097557-12097576 | None:intergenic | 60.0% | |
| GATCCTACCCGAGATCGGGA+AGG | - | chr6_3:12098007-12098026 | Msa0939880:intron | 60.0% | |
| TCCTACCCGAGATCGGGAAG+GGG | - | chr6_3:12098009-12098028 | Msa0939880:intron | 60.0% | |
| TGTGACCCCTTCCCGATCTC+GGG | + | chr6_3:12098017-12098036 | None:intergenic | 60.0% | |
| GTACCCCATGCTCAGGAGTC+AGG | - | chr6_3:12098533-12098552 | Msa0939880:intron | 60.0% | |
| ! | TCGGGCTAGGCCATTGGTCA+GGG | + | chr6_3:12099032-12099051 | None:intergenic | 60.0% |
| ! | ATCGGGCTAGGCCATTGGTC+AGG | + | chr6_3:12099033-12099052 | None:intergenic | 60.0% |
| ! | GGCTTATCGGGCTAGGCCAT+TGG | + | chr6_3:12099038-12099057 | None:intergenic | 60.0% |
| ACCCCTTCCCGATCTCGGGT+AGG | + | chr6_3:12098013-12098032 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 12093977 | 12100266 | 12093977 | ID=Msa0939880;Name=Msa0939880 |
| chr6_3 | mRNA | 12093977 | 12100266 | 12093977 | ID=Msa0939880-mRNA-1;Parent=Msa0939880;Name=Msa0939880-mRNA-1;_AED=0.14;_eAED=0.14;_QI=377|1|1|1|0.75|0.6|5|373|229 |
| chr6_3 | exon | 12093977 | 12094382 | 12093977 | ID=Msa0939880-mRNA-1:exon:3985;Parent=Msa0939880-mRNA-1 |
| chr6_3 | exon | 12094940 | 12095049 | 12094940 | ID=Msa0939880-mRNA-1:exon:3984;Parent=Msa0939880-mRNA-1 |
| chr6_3 | exon | 12097177 | 12097603 | 12097177 | ID=Msa0939880-mRNA-1:exon:3983;Parent=Msa0939880-mRNA-1 |
| chr6_3 | exon | 12098743 | 12099056 | 12098743 | ID=Msa0939880-mRNA-1:exon:3982;Parent=Msa0939880-mRNA-1 |
| chr6_3 | exon | 12100084 | 12100266 | 12100084 | ID=Msa0939880-mRNA-1:exon:3981;Parent=Msa0939880-mRNA-1 |
| chr6_3 | five_prime_UTR | 12100084 | 12100266 | 12100084 | ID=Msa0939880-mRNA-1:five_prime_utr;Parent=Msa0939880-mRNA-1 |
| chr6_3 | five_prime_UTR | 12098863 | 12099056 | 12098863 | ID=Msa0939880-mRNA-1:five_prime_utr;Parent=Msa0939880-mRNA-1 |
| chr6_3 | CDS | 12098743 | 12098862 | 12098743 | ID=Msa0939880-mRNA-1:cds;Parent=Msa0939880-mRNA-1 |
| chr6_3 | CDS | 12097177 | 12097603 | 12097177 | ID=Msa0939880-mRNA-1:cds;Parent=Msa0939880-mRNA-1 |
| chr6_3 | CDS | 12094940 | 12095049 | 12094940 | ID=Msa0939880-mRNA-1:cds;Parent=Msa0939880-mRNA-1 |
| chr6_3 | CDS | 12094350 | 12094382 | 12094350 | ID=Msa0939880-mRNA-1:cds;Parent=Msa0939880-mRNA-1 |
| chr6_3 | three_prime_UTR | 12093977 | 12094349 | 12093977 | ID=Msa0939880-mRNA-1:three_prime_utr;Parent=Msa0939880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
