Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940420 | sp|Q9FWA4|GAUT9_ARATH | 74.862 | 545 | 137 | 0 | 11 | 555 | 17 | 561 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940420 | G7ZV05 | 99.820 | 555 | 1 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118430 | Msa0940420 | 0.838393 | 2.953967e-57 | -8.615850e-47 |
| Msa0826510 | Msa0940420 | 0.809952 | 1.467350e-50 | -8.615850e-47 |
| Msa0865620 | Msa0940420 | 0.806439 | 8.221440e-50 | -8.615850e-47 |
| Msa0940420 | Msa1459910 | 0.803419 | 3.517859e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940420 | MtrunA17_Chr6g0456071 | 99.820 | 555 | 1 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1157 |
| Msa0940420 | MtrunA17_Chr7g0235161 | 65.448 | 547 | 173 | 6 | 23 | 555 | 16 | 560 | 0.0 | 727 |
| Msa0940420 | MtrunA17_Chr8g0351091 | 47.771 | 471 | 226 | 8 | 85 | 553 | 158 | 610 | 1.41e-152 | 451 |
| Msa0940420 | MtrunA17_Chr7g0246371 | 48.511 | 470 | 222 | 8 | 85 | 553 | 212 | 662 | 3.36e-146 | 436 |
| Msa0940420 | MtrunA17_Chr2g0290961 | 49.261 | 406 | 201 | 4 | 149 | 553 | 264 | 665 | 2.80e-144 | 431 |
| Msa0940420 | MtrunA17_Chr3g0138381 | 50.777 | 386 | 188 | 2 | 169 | 553 | 279 | 663 | 4.92e-143 | 428 |
| Msa0940420 | MtrunA17_Chr8g0383241 | 46.814 | 408 | 207 | 5 | 149 | 554 | 91 | 490 | 9.88e-138 | 408 |
| Msa0940420 | MtrunA17_Chr2g0283461 | 42.292 | 480 | 254 | 9 | 78 | 553 | 72 | 532 | 5.24e-133 | 397 |
| Msa0940420 | MtrunA17_Chr4g0061711 | 45.455 | 407 | 213 | 5 | 149 | 551 | 131 | 532 | 1.66e-125 | 378 |
| Msa0940420 | MtrunA17_Chr2g0308241 | 44.039 | 411 | 221 | 5 | 148 | 554 | 130 | 535 | 1.54e-120 | 365 |
| Msa0940420 | MtrunA17_Chr2g0277591 | 39.130 | 483 | 241 | 11 | 78 | 553 | 72 | 508 | 2.85e-111 | 341 |
| Msa0940420 | MtrunA17_Chr2g0319311 | 40.136 | 441 | 232 | 10 | 136 | 553 | 108 | 539 | 2.99e-110 | 339 |
| Msa0940420 | MtrunA17_Chr7g0218571 | 39.903 | 411 | 227 | 6 | 161 | 552 | 125 | 534 | 3.19e-100 | 313 |
| Msa0940420 | MtrunA17_Chr4g0076011 | 38.670 | 406 | 213 | 8 | 178 | 552 | 70 | 470 | 4.47e-96 | 300 |
| Msa0940420 | MtrunA17_Chr6g0454101 | 39.903 | 411 | 227 | 6 | 161 | 552 | 120 | 529 | 5.61e-93 | 294 |
| Msa0940420 | MtrunA17_Chr7g0260711 | 40.000 | 355 | 183 | 5 | 202 | 553 | 325 | 652 | 1.96e-86 | 281 |
| Msa0940420 | MtrunA17_Chr1g0184751 | 40.616 | 357 | 180 | 6 | 202 | 553 | 268 | 597 | 2.77e-85 | 276 |
| Msa0940420 | MtrunA17_Chr3g0097091 | 37.405 | 393 | 220 | 10 | 177 | 551 | 142 | 526 | 6.57e-83 | 268 |
| Msa0940420 | MtrunA17_Chr4g0076331 | 48.990 | 198 | 71 | 3 | 358 | 552 | 1 | 171 | 2.04e-55 | 184 |
| Msa0940420 | MtrunA17_Chr7g0245621 | 34.324 | 370 | 208 | 9 | 193 | 552 | 298 | 642 | 1.63e-51 | 186 |
| Msa0940420 | MtrunA17_Chr4g0066331 | 31.414 | 191 | 122 | 6 | 359 | 540 | 145 | 335 | 4.07e-23 | 100 |
| Msa0940420 | MtrunA17_Chr3g0127611 | 30.526 | 190 | 124 | 5 | 359 | 540 | 140 | 329 | 7.62e-21 | 94.0 |
| Msa0940420 | MtrunA17_Chr7g0259321 | 30.857 | 175 | 116 | 4 | 359 | 528 | 151 | 325 | 2.84e-20 | 92.4 |
| Msa0940420 | MtrunA17_Chr7g0269751 | 30.814 | 172 | 114 | 4 | 359 | 525 | 159 | 330 | 4.79e-20 | 92.0 |
| Msa0940420 | MtrunA17_Chr6g0451981 | 26.351 | 296 | 178 | 10 | 240 | 525 | 74 | 339 | 1.05e-19 | 91.3 |
| Msa0940420 | MtrunA17_Chr5g0414981 | 29.534 | 193 | 123 | 6 | 359 | 540 | 180 | 370 | 3.05e-18 | 87.4 |
| Msa0940420 | MtrunA17_Chr1g0196511 | 29.474 | 190 | 126 | 5 | 359 | 540 | 154 | 343 | 1.19e-15 | 78.6 |
| Msa0940420 | MtrunA17_Chr1g0154521 | 29.688 | 192 | 125 | 6 | 359 | 540 | 165 | 356 | 1.41e-15 | 78.6 |
| Msa0940420 | MtrunA17_Chr3g0141321 | 27.225 | 191 | 130 | 5 | 359 | 540 | 139 | 329 | 5.02e-15 | 76.6 |
| Msa0940420 | MtrunA17_Chr8g0373671 | 27.461 | 193 | 129 | 6 | 359 | 540 | 142 | 334 | 1.25e-13 | 72.4 |
| Msa0940420 | MtrunA17_Chr5g0403501 | 28.272 | 191 | 128 | 6 | 359 | 540 | 166 | 356 | 8.11e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940420 | AT3G02350.1 | 74.862 | 545 | 137 | 0 | 11 | 555 | 17 | 561 | 0.0 | 845 |
| Msa0940420 | AT3G25140.1 | 65.719 | 563 | 181 | 8 | 1 | 555 | 1 | 559 | 0.0 | 750 |
| Msa0940420 | AT3G61130.1 | 51.733 | 404 | 187 | 6 | 153 | 553 | 273 | 671 | 3.03e-151 | 449 |
| Msa0940420 | AT5G47780.1 | 50.390 | 385 | 187 | 2 | 170 | 554 | 235 | 615 | 1.40e-145 | 433 |
| Msa0940420 | AT4G38270.2 | 49.490 | 392 | 192 | 3 | 167 | 553 | 284 | 674 | 9.14e-142 | 425 |
| Msa0940420 | AT4G38270.1 | 49.490 | 392 | 192 | 3 | 167 | 553 | 288 | 678 | 1.05e-141 | 425 |
| Msa0940420 | AT1G18580.1 | 47.537 | 406 | 206 | 5 | 150 | 551 | 132 | 534 | 3.64e-133 | 399 |
| Msa0940420 | AT2G46480.3 | 46.552 | 406 | 214 | 3 | 148 | 551 | 132 | 536 | 9.54e-130 | 390 |
| Msa0940420 | AT2G46480.4 | 46.552 | 406 | 214 | 3 | 148 | 551 | 145 | 549 | 2.19e-129 | 389 |
| Msa0940420 | AT2G20810.1 | 42.917 | 480 | 249 | 8 | 80 | 553 | 75 | 535 | 1.01e-127 | 384 |
| Msa0940420 | AT2G46480.2 | 43.350 | 406 | 202 | 4 | 148 | 551 | 132 | 511 | 8.72e-115 | 350 |
| Msa0940420 | AT2G46480.1 | 43.350 | 406 | 202 | 4 | 148 | 551 | 145 | 524 | 1.82e-114 | 350 |
| Msa0940420 | AT5G54690.1 | 37.529 | 429 | 243 | 9 | 148 | 553 | 106 | 532 | 1.10e-102 | 320 |
| Msa0940420 | AT3G01040.2 | 39.198 | 449 | 238 | 10 | 137 | 552 | 83 | 529 | 1.30e-97 | 306 |
| Msa0940420 | AT3G01040.3 | 39.198 | 449 | 238 | 10 | 137 | 552 | 83 | 529 | 1.30e-97 | 306 |
| Msa0940420 | AT5G15470.1 | 39.344 | 427 | 234 | 8 | 149 | 552 | 105 | 529 | 1.00e-96 | 304 |
| Msa0940420 | AT1G06780.1 | 39.633 | 381 | 200 | 7 | 177 | 553 | 233 | 587 | 4.28e-89 | 286 |
| Msa0940420 | AT1G06780.2 | 39.633 | 381 | 200 | 7 | 177 | 553 | 246 | 600 | 8.04e-89 | 286 |
| Msa0940420 | AT2G30575.1 | 36.486 | 444 | 249 | 9 | 115 | 553 | 193 | 608 | 1.05e-87 | 283 |
| Msa0940420 | AT3G01040.1 | 36.735 | 441 | 227 | 12 | 137 | 552 | 83 | 496 | 3.55e-83 | 268 |
| Msa0940420 | AT3G58790.2 | 36.802 | 394 | 223 | 10 | 179 | 551 | 16 | 404 | 8.72e-80 | 256 |
| Msa0940420 | AT3G58790.1 | 34.676 | 447 | 252 | 12 | 139 | 551 | 96 | 536 | 3.41e-79 | 259 |
| Msa0940420 | AT2G38650.2 | 34.278 | 353 | 208 | 7 | 202 | 552 | 286 | 616 | 2.64e-55 | 197 |
| Msa0940420 | AT2G38650.1 | 34.278 | 353 | 208 | 7 | 202 | 552 | 286 | 616 | 2.64e-55 | 197 |
| Msa0940420 | AT2G38650.3 | 34.100 | 261 | 149 | 7 | 202 | 461 | 286 | 524 | 1.28e-31 | 129 |
| Msa0940420 | AT3G06260.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 150 | 339 | 1.42e-20 | 94.0 |
| Msa0940420 | AT4G02130.3 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.73e-19 | 90.5 |
| Msa0940420 | AT4G02130.1 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.73e-19 | 90.5 |
| Msa0940420 | AT4G02130.2 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.73e-19 | 90.5 |
| Msa0940420 | AT3G28340.1 | 31.638 | 177 | 114 | 5 | 357 | 526 | 153 | 329 | 5.14e-19 | 89.4 |
| Msa0940420 | AT3G62660.1 | 29.474 | 190 | 126 | 5 | 359 | 540 | 164 | 353 | 1.44e-18 | 88.2 |
| Msa0940420 | AT1G70090.1 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.32e-18 | 87.4 |
| Msa0940420 | AT1G70090.2 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.32e-18 | 87.4 |
| Msa0940420 | AT1G02720.1 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 7.12e-18 | 85.9 |
| Msa0940420 | AT1G02720.2 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 7.12e-18 | 85.9 |
| Msa0940420 | AT1G24170.1 | 25.000 | 312 | 193 | 11 | 240 | 540 | 81 | 362 | 2.25e-16 | 81.6 |
| Msa0940420 | AT1G19300.1 | 29.480 | 173 | 116 | 5 | 359 | 525 | 150 | 322 | 1.64e-15 | 78.6 |
| Msa0940420 | AT1G13250.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 144 | 333 | 6.36e-14 | 73.6 |
| Msa0940420 | AT3G50760.1 | 25.698 | 179 | 124 | 5 | 357 | 526 | 134 | 312 | 8.88e-11 | 63.9 |
Find 132 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAGATATTACGCAATTT+AGG | 0.100856 | 6_3:-12817555 | None:intergenic |
| ATTGCGTAATATCTTACTTT+TGG | 0.234871 | 6_3:+12817560 | Msa0940420:CDS |
| CAAGATCCAATGGCGGTTTC+TGG | 0.247730 | 6_3:+12815221 | Msa0940420:exon |
| TGACTTCGTTGTTGAGTAAA+AGG | 0.252347 | 6_3:-12818510 | None:intergenic |
| AAAGCATGTGCTTGGACTTA+TGG | 0.269972 | 6_3:+12817741 | Msa0940420:CDS |
| TTCTCAATACTGTAAGAATA+TGG | 0.275254 | 6_3:-12818798 | None:intergenic |
| TTGAAGGTCTCCTTGATTAA+AGG | 0.276921 | 6_3:-12817714 | None:intergenic |
| GCAGTTTGAGAAAGAGATTA+AGG | 0.282255 | 6_3:+12816879 | Msa0940420:CDS |
| CAAACTCTTGGGAACTGATT+TGG | 0.285099 | 6_3:-12817055 | None:intergenic |
| GTAAGATATTACGCAATTTA+GGG | 0.288691 | 6_3:-12817554 | None:intergenic |
| TTCGTGGATTCTTCTCTTAC+CGG | 0.307603 | 6_3:+12815270 | Msa0940420:CDS |
| GTCCAACATCGACAGGTATT+TGG | 0.309919 | 6_3:-12817502 | None:intergenic |
| TGAGAAAATCTCATGTTAAA+TGG | 0.321549 | 6_3:+12818815 | Msa0940420:three_prime_UTR |
| TAAGTCCAAGCACATGCTTT+TGG | 0.336542 | 6_3:-12817738 | None:intergenic |
| GTTGAAGATGTTTGATGAAT+TGG | 0.345952 | 6_3:+12816768 | Msa0940420:CDS |
| GCACAGAACATTACCATTAC+TGG | 0.352779 | 6_3:+12817805 | Msa0940420:CDS |
| TTCGTCCAGATGTGCAATTT+TGG | 0.359906 | 6_3:+12818704 | Msa0940420:CDS |
| TCATGGCATGTACTCGGATT+AGG | 0.364109 | 6_3:+12818542 | Msa0940420:CDS |
| AGAACGAAGACCAGACAATA+TGG | 0.369537 | 6_3:+12818456 | Msa0940420:intron |
| CTTTCATCTCTATACTTCTC+CGG | 0.388330 | 6_3:-12817120 | None:intergenic |
| AGCTTAAGCTTGATATTTCT+AGG | 0.388924 | 6_3:+12816743 | Msa0940420:CDS |
| AGACCAGACAATATGGAAAT+CGG | 0.388975 | 6_3:+12818463 | Msa0940420:CDS |
| TCCCAAGAGTTTGCATTGCT+TGG | 0.390754 | 6_3:+12817065 | Msa0940420:CDS |
| ATCTCATCCATGCTAATACT+TGG | 0.391177 | 6_3:-12818572 | None:intergenic |
| TAAATATGTTGACAGCGATA+TGG | 0.394960 | 6_3:+12818679 | Msa0940420:CDS |
| TTGCTAAGGCAAAGAAGAAC+GGG | 0.403379 | 6_3:+12817010 | Msa0940420:CDS |
| AATTCACGTACTGCGAATAT+CGG | 0.415001 | 6_3:-12817683 | None:intergenic |
| TATTCATATGCTGATAGTAT+TGG | 0.415154 | 6_3:+12819023 | Msa0940420:three_prime_UTR |
| ATAAACCAAAATTGCACATC+TGG | 0.415540 | 6_3:-12818709 | None:intergenic |
| AGGTTTGTGGAAGATTGATT+TGG | 0.416602 | 6_3:+12817614 | Msa0940420:CDS |
| AGCCAAGCAATGCAAACTCT+TGG | 0.417299 | 6_3:-12817067 | None:intergenic |
| AGCTAAAGATCATATTTCAT+TGG | 0.424216 | 6_3:+12816693 | Msa0940420:CDS |
| TTTCTCTCATCCTTTAATCA+AGG | 0.433708 | 6_3:+12817704 | Msa0940420:CDS |
| TAAAATGAGGCCGGTTGAAG+GGG | 0.440056 | 6_3:+12817317 | Msa0940420:CDS |
| TGAAAGTTTGGTTTAAAATG+AGG | 0.442153 | 6_3:+12817304 | Msa0940420:CDS |
| CGCAATTTAGGGTACATCTC+TGG | 0.448080 | 6_3:-12817543 | None:intergenic |
| GACCAGACAATATGGAAATC+GGG | 0.448864 | 6_3:+12818464 | Msa0940420:CDS |
| TTACAGGATCTTCCTACTAC+TGG | 0.449291 | 6_3:+12816592 | Msa0940420:intron |
| TTTAAAATGAGGCCGGTTGA+AGG | 0.453435 | 6_3:+12817315 | Msa0940420:CDS |
| CATTGAAATCTGACCCACTT+AGG | 0.457831 | 6_3:+12816644 | Msa0940420:CDS |
| TCCCCGATTTCCATATTGTC+TGG | 0.461507 | 6_3:-12818466 | None:intergenic |
| CATTGAGAATCAAGGTGATA+AGG | 0.462472 | 6_3:+12817443 | Msa0940420:CDS |
| CTCAACACATCCTCATCAAT+CGG | 0.464839 | 6_3:-12816856 | None:intergenic |
| CGAAGTCACTGGACAAATCA+TGG | 0.468896 | 6_3:+12818525 | Msa0940420:CDS |
| ATGTTGCTGCAATGAAAGTT+TGG | 0.471183 | 6_3:+12817292 | Msa0940420:CDS |
| GGTGCCGTAGAGATCTGTTT+CGG | 0.476655 | 6_3:+12817651 | Msa0940420:CDS |
| TTACCTTGTTCTGCCAGTAA+TGG | 0.482948 | 6_3:-12817818 | None:intergenic |
| TGTTAAATGGTGCATGCCAC+AGG | 0.486190 | 6_3:+12818828 | Msa0940420:three_prime_UTR |
| GCCAAGCAATGCAAACTCTT+GGG | 0.486260 | 6_3:-12817066 | None:intergenic |
| CCAATGGCGGTTTCTGGTAG+AGG | 0.491768 | 6_3:+12815227 | Msa0940420:exon |
| TTAAAATGAGGCCGGTTGAA+GGG | 0.492104 | 6_3:+12817316 | Msa0940420:CDS |
| TATTTGATCTTGATGCTTGG+AGG | 0.492476 | 6_3:+12817772 | Msa0940420:CDS |
| TCAATCCAAAAGCATGTGCT+TGG | 0.499392 | 6_3:+12817733 | Msa0940420:CDS |
| ATATATTTGATCTTGATGCT+TGG | 0.500145 | 6_3:+12817769 | Msa0940420:CDS |
| GGCAAAGAAGAACGGGGCAT+TGG | 0.503181 | 6_3:+12817017 | Msa0940420:CDS |
| TTACTCAACAACGAAGTCAC+TGG | 0.504531 | 6_3:+12818514 | Msa0940420:CDS |
| AGTATAGAGATGAAAGTCCT+AGG | 0.505593 | 6_3:+12817127 | Msa0940420:CDS |
| GATTTGGATGGGAAGGTGAA+TGG | 0.507230 | 6_3:+12817630 | Msa0940420:CDS |
| TTGCTTGGCTATGAGACTGA+TGG | 0.508457 | 6_3:+12817080 | Msa0940420:CDS |
| GTTAAAGATTCAGAAGTTGA+AGG | 0.511052 | 6_3:+12816960 | Msa0940420:CDS |
| CTTAAATTCATCGTATGTAC+CGG | 0.512838 | 6_3:+12817380 | Msa0940420:CDS |
| TTTCATCTCTATACTTCTCC+GGG | 0.514817 | 6_3:-12817119 | None:intergenic |
| AAAAGGACTTGACAGGTTTG+TGG | 0.514967 | 6_3:+12817601 | Msa0940420:CDS |
| CCTCTACCAGAAACCGCCAT+TGG | 0.516987 | 6_3:-12815227 | None:intergenic |
| AAATCCACTCTTGTCCTAAG+TGG | 0.522559 | 6_3:-12816658 | None:intergenic |
| CGCCAAATACCTGTCGATGT+TGG | 0.524059 | 6_3:+12817500 | Msa0940420:CDS |
| ACATATGCATTACCAGTAGT+AGG | 0.530737 | 6_3:-12816604 | None:intergenic |
| TGATGATGTTGTGGTGCAAA+AGG | 0.536392 | 6_3:+12817584 | Msa0940420:CDS |
| TGTGGAAGATTGATTTGGAT+GGG | 0.537910 | 6_3:+12817619 | Msa0940420:CDS |
| GACAAATCATGGCATGTACT+CGG | 0.538880 | 6_3:+12818536 | Msa0940420:CDS |
| GCTGCTGTTATTCATTACAA+TGG | 0.540639 | 6_3:+12818602 | Msa0940420:CDS |
| GGATCTTCAAACTCCGGCCT+AGG | 0.542382 | 6_3:-12817144 | None:intergenic |
| GCGTCGTTGTTTGAGTCGGA+TGG | 0.542623 | 6_3:+12816832 | Msa0940420:CDS |
| TTGTGGAAGATTGATTTGGA+TGG | 0.543073 | 6_3:+12817618 | Msa0940420:CDS |
| TGTTAATGAGTCACTTGCTA+AGG | 0.546277 | 6_3:+12816996 | Msa0940420:CDS |
| GAAGATAGTCCAACATCGAC+AGG | 0.549250 | 6_3:-12817509 | None:intergenic |
| CAGCATTACATTGAGAATCA+AGG | 0.549426 | 6_3:+12817435 | Msa0940420:CDS |
| TAGAGATGAAAGTCCTAGGC+CGG | 0.550345 | 6_3:+12817131 | Msa0940420:CDS |
| ACAATGGAAACATGAAACCT+TGG | 0.551889 | 6_3:+12818618 | Msa0940420:CDS |
| TGCTTGGCTATGAGACTGAT+GGG | 0.555380 | 6_3:+12817081 | Msa0940420:CDS |
| GGGTGAGAAGATTTCGAACC+CGG | 0.565653 | 6_3:+12817101 | Msa0940420:CDS |
| AGGATAGAGTGAAGATTGCG+AGG | 0.565662 | 6_3:+12816899 | Msa0940420:CDS |
| ATTGCATAATGATACAAACT+TGG | 0.566531 | 6_3:-12817165 | None:intergenic |
| TTCAAAGCAATATCTAGCCA+AGG | 0.567247 | 6_3:-12818635 | None:intergenic |
| CTTGCTAAGGCAAAGAAGAA+CGG | 0.567481 | 6_3:+12817009 | Msa0940420:CDS |
| AAATCGGGGACGCTTCCACC+TGG | 0.569876 | 6_3:+12818479 | Msa0940420:CDS |
| CAGAGCGTCGTTGTTTGAGT+CGG | 0.578709 | 6_3:+12816828 | Msa0940420:CDS |
| ATACAATCCAAGTATTAGCA+TGG | 0.580209 | 6_3:+12818565 | Msa0940420:CDS |
| ATGCTTATGCTGCATATGCT+AGG | 0.582801 | 6_3:+12816719 | Msa0940420:CDS |
| TCTGGTAGAGGAAGCAGAGG+TGG | 0.585835 | 6_3:+12815239 | Msa0940420:CDS |
| AGACAACGTGATAGCTGTAT+CGG | 0.586849 | 6_3:+12817194 | Msa0940420:CDS |
| AACAACGACGCTCTGTACGT+TGG | 0.587834 | 6_3:-12816820 | None:intergenic |
| CATCGTATGTACCGGTGTTG+AGG | 0.588004 | 6_3:+12817388 | Msa0940420:CDS |
| AGTTTGGTTTAAAATGAGGC+CGG | 0.588130 | 6_3:+12817308 | Msa0940420:CDS |
| TAAAGAATGCAGTTGAGCCA+TGG | 0.589043 | 6_3:+12817235 | Msa0940420:CDS |
| ACATAGCAGAGATAAAGATC+CGG | 0.591248 | 6_3:-12815289 | None:intergenic |
| GAAACAAACAAAATATCAGT+AGG | 0.593227 | 6_3:-12819107 | None:intergenic |
| CGTGATAGCTGTATCGGTGG+TGG | 0.598224 | 6_3:+12817200 | Msa0940420:CDS |
| AAGATGTTTGATGAATTGGC+TGG | 0.598245 | 6_3:+12816772 | Msa0940420:CDS |
| AATCCACTCTTGTCCTAAGT+GGG | 0.603135 | 6_3:-12816657 | None:intergenic |
| AGAGGTGGATCTACCCTTCG+TGG | 0.606916 | 6_3:+12815254 | Msa0940420:CDS |
| ATCAACAACGAATTCTCAGA+TGG | 0.607612 | 6_3:-12818893 | None:intergenic |
| CAAGAGAGTACAAGATCCAA+TGG | 0.610362 | 6_3:+12815211 | Msa0940420:exon |
| AAACTTGGATCTTCAAACTC+CGG | 0.611119 | 6_3:-12817150 | None:intergenic |
| GCCTCAACTTGCCTCAACAC+CGG | 0.612683 | 6_3:-12817399 | None:intergenic |
| GTGGTGCAAAAGGACTTGAC+AGG | 0.614307 | 6_3:+12817594 | Msa0940420:CDS |
| TCACGTACTGCGAATATCGG+TGG | 0.615538 | 6_3:-12817680 | None:intergenic |
| GAATTTGATAAGTGTGTGTG+TGG | 0.616954 | 6_3:-12815002 | None:intergenic |
| ACCGGTGTTGAGGCAAGTTG+AGG | 0.622859 | 6_3:+12817398 | Msa0940420:CDS |
| GAAGATTGATTTGGATGGGA+AGG | 0.627613 | 6_3:+12817623 | Msa0940420:CDS |
| ACCAGACAATATGGAAATCG+GGG | 0.633868 | 6_3:+12818465 | Msa0940420:CDS |
| GAGTAAAAGGTAATCAAACC+AGG | 0.642054 | 6_3:-12818497 | None:intergenic |
| AGAACCGAAACAGATCTCTA+CGG | 0.643054 | 6_3:-12817655 | None:intergenic |
| AAAATGAGGCCGGTTGAAGG+GGG | 0.645027 | 6_3:+12817318 | Msa0940420:CDS |
| GATGATTGTCAGATGCTACA+AGG | 0.648879 | 6_3:+12818913 | Msa0940420:three_prime_UTR |
| TGACCCACTTAGGACAAGAG+TGG | 0.652138 | 6_3:+12816654 | Msa0940420:CDS |
| ATCGGTGGTGGTTAGATCTG+TGG | 0.657669 | 6_3:+12817212 | Msa0940420:CDS |
| CAACGTGATAGCTGTATCGG+TGG | 0.659045 | 6_3:+12817197 | Msa0940420:CDS |
| TTACCATTACTGGCAGAACA+AGG | 0.659270 | 6_3:+12817815 | Msa0940420:CDS |
| TGCGAGGATGATGATTGTTG+AGG | 0.674761 | 6_3:+12816915 | Msa0940420:CDS |
| GTTTCTGGTAGAGGAAGCAG+AGG | 0.683776 | 6_3:+12815236 | Msa0940420:CDS |
| GTAAGAGAAGAATCCACGAA+GGG | 0.684633 | 6_3:-12815267 | None:intergenic |
| GTCGGATGGTCCGATTGATG+AGG | 0.696242 | 6_3:+12816846 | Msa0940420:CDS |
| TAAAAGGTAATCAAACCAGG+TGG | 0.699075 | 6_3:-12818494 | None:intergenic |
| AATTTGATAAGTGTGTGTGT+GGG | 0.701698 | 6_3:-12815001 | None:intergenic |
| GACAATACAGAACTTTCCTG+TGG | 0.705921 | 6_3:-12818844 | None:intergenic |
| CGATTGATGAGGATGTGTTG+AGG | 0.706532 | 6_3:+12816857 | Msa0940420:CDS |
| AAGAATATGGTAAACCACAG+TGG | 0.722040 | 6_3:-12818785 | None:intergenic |
| GGTAAGAGAAGAATCCACGA+AGG | 0.736492 | 6_3:-12815268 | None:intergenic |
| GAGAGTACAAGATCCAATGG+CGG | 0.738861 | 6_3:+12815214 | Msa0940420:exon |
| TGCTAAGGCAAAGAAGAACG+GGG | 0.743020 | 6_3:+12817011 | Msa0940420:CDS |
| TTGAGATGAAGTGTCCACTG+TGG | 0.791940 | 6_3:+12818771 | Msa0940420:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATATTAAAAAGATAA+TGG | - | chr6_3:12817941-12817960 | None:intergenic | 10.0% |
| !!! | TTGTAAAGTTTTGATTTTTA+TGG | + | chr6_3:12815410-12815429 | Msa0940420:intron | 15.0% |
| !! | CAATTTCCAAAATAAAAAAT+GGG | - | chr6_3:12815439-12815458 | None:intergenic | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_3:12815469-12815488 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_3:12815470-12815489 | None:intergenic | 15.0% |
| !! | AATTCATGAAATTAACATAT+GGG | - | chr6_3:12815500-12815519 | None:intergenic | 15.0% |
| !!! | TTGAAACCTATTATAAATTT+TGG | + | chr6_3:12815740-12815759 | Msa0940420:intron | 15.0% |
| !! | CAATATCCAAAATTTATAAT+AGG | - | chr6_3:12815749-12815768 | None:intergenic | 15.0% |
| !!! | CTATTATAAATTTTGGATAT+TGG | + | chr6_3:12815747-12815766 | Msa0940420:intron | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_3:12815469-12815488 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_3:12815470-12815489 | None:intergenic | 15.0% |
| !!! | ACAATAACTTTATAAACTTT+TGG | + | chr6_3:12816097-12816116 | Msa0940420:intron | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_3:12815469-12815488 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_3:12815470-12815489 | None:intergenic | 15.0% |
| !!! | TAATTTTTATTTGCTGAATT+TGG | + | chr6_3:12818939-12818958 | Msa0940420:three_prime_UTR | 15.0% |
| !!! | ATTTTTTTCATTTTCTAGTT+TGG | + | chr6_3:12818985-12819004 | Msa0940420:three_prime_UTR | 15.0% |
| !! | CCAATTTCCAAAATAAAAAA+TGG | - | chr6_3:12815440-12815459 | None:intergenic | 20.0% |
| !!! | CCATTTTTTATTTTGGAAAT+TGG | + | chr6_3:12815437-12815456 | Msa0940420:intron | 20.0% |
| !! | CAATTCATGAAATTAACATA+TGG | - | chr6_3:12815501-12815520 | None:intergenic | 20.0% |
| !! | TCACACTGATAATAATAATT+TGG | + | chr6_3:12815617-12815636 | Msa0940420:intron | 20.0% |
| !! | CACACTGATAATAATAATTT+GGG | + | chr6_3:12815618-12815637 | Msa0940420:intron | 20.0% |
| !! | CAAAATTTGATGAATTGAAT+TGG | - | chr6_3:12815690-12815709 | None:intergenic | 20.0% |
| !! | AGTTCATCAAATTAACATAT+CGG | - | chr6_3:12816161-12816180 | None:intergenic | 20.0% |
| !! | TTCATTTCTCAAATTATTAC+CGG | - | chr6_3:12816468-12816487 | None:intergenic | 20.0% |
| !!! | ACTTAATAAATGACACATTT+TGG | - | chr6_3:12818059-12818078 | None:intergenic | 20.0% |
| !!! | TTGAATCTTGAATTATTTTG+AGG | - | chr6_3:12818136-12818155 | None:intergenic | 20.0% |
| !! | CCTATTTAATAATTGTACAA+AGG | - | chr6_3:12818391-12818410 | None:intergenic | 20.0% |
| !! | CCTTTGTACAATTATTAAAT+AGG | + | chr6_3:12818388-12818407 | Msa0940420:intron | 20.0% |
| !!! | TGGAAACCCATTTTTTATTT+TGG | + | chr6_3:12815430-12815449 | Msa0940420:intron | 25.0% |
| ! | CAATTCATGAAACTAACATA+TGG | - | chr6_3:12815811-12815830 | None:intergenic | 25.0% |
| !! | TCATTTTCTCAAACTATTAC+CGG | - | chr6_3:12815914-12815933 | None:intergenic | 25.0% |
| ! | TCATTTCTCAAATTATTACC+GGG | - | chr6_3:12816467-12816486 | None:intergenic | 25.0% |
| !! | ATATGTGCATAGAACATTTT+TGG | + | chr6_3:12816385-12816404 | Msa0940420:intron | 25.0% |
| ! | AGCTAAAGATCATATTTCAT+TGG | + | chr6_3:12816693-12816712 | Msa0940420:CDS | 25.0% |
| ! | ATTGCATAATGATACAAACT+TGG | - | chr6_3:12817168-12817187 | None:intergenic | 25.0% |
| !! | TGAAAGTTTGGTTTAAAATG+AGG | + | chr6_3:12817304-12817323 | Msa0940420:CDS | 25.0% |
| !!! | TGCATTTTTAGAGATAAAGT+CGG | + | chr6_3:12817341-12817360 | Msa0940420:CDS | 25.0% |
| ! | GTAAGATATTACGCAATTTA+GGG | - | chr6_3:12817557-12817576 | None:intergenic | 25.0% |
| ! | AGTAAGATATTACGCAATTT+AGG | - | chr6_3:12817558-12817577 | None:intergenic | 25.0% |
| !! | ATTGCGTAATATCTTACTTT+TGG | + | chr6_3:12817560-12817579 | Msa0940420:CDS | 25.0% |
| ! | ATATATTTGATCTTGATGCT+TGG | + | chr6_3:12817769-12817788 | Msa0940420:CDS | 25.0% |
| !! | ATGTGCCAATAATTTTATAC+TGG | + | chr6_3:12817888-12817907 | Msa0940420:intron | 25.0% |
| ! | GGTTACCAGTATAAAATTAT+TGG | - | chr6_3:12817896-12817915 | None:intergenic | 25.0% |
| ! | TTTCGAAAAAGCAATTGAAA+CGG | - | chr6_3:12817917-12817936 | None:intergenic | 25.0% |
| ! | CAATTCACAATTTGAAAAAC+TGG | - | chr6_3:12818007-12818026 | None:intergenic | 25.0% |
| ! | TGAGTTTCATCATAATTAAC+CGG | + | chr6_3:12818229-12818248 | Msa0940420:intron | 25.0% |
| !! | AGTAGAGATTCATATTGATT+GGG | + | chr6_3:12818275-12818294 | Msa0940420:intron | 25.0% |
| ! | GTATCAAATAGAGATACAAT+TGG | + | chr6_3:12818307-12818326 | Msa0940420:intron | 25.0% |
| ! | TGAATCAATACAAAAATCTC+TGG | + | chr6_3:12818654-12818673 | Msa0940420:CDS | 25.0% |
| ! | TTCTCAATACTGTAAGAATA+TGG | - | chr6_3:12818801-12818820 | None:intergenic | 25.0% |
| ! | TGAGAAAATCTCATGTTAAA+TGG | + | chr6_3:12818815-12818834 | Msa0940420:three_prime_UTR | 25.0% |
| ! | TATTCATATGCTGATAGTAT+TGG | + | chr6_3:12819023-12819042 | Msa0940420:three_prime_UTR | 25.0% |
| ! | GAAACAAACAAAATATCAGT+AGG | - | chr6_3:12819110-12819129 | None:intergenic | 25.0% |
| !!! | ACTGATATTTTGTTTGTTTC+TGG | + | chr6_3:12819110-12819129 | Msa0940420:three_prime_UTR | 25.0% |
| AATTTGATAAGTGTGTGTGT+GGG | - | chr6_3:12815004-12815023 | None:intergenic | 30.0% | |
| !!! | GAACAAAACAGTTTTGTTTC+TGG | + | chr6_3:12815169-12815188 | Msa0940420:five_prime_UTR | 30.0% |
| ! | ATTTTCTGTAGAAGGATTTG+TGG | - | chr6_3:12815354-12815373 | None:intergenic | 30.0% |
| CAACAAAAACACAAAAACAG+AGG | - | chr6_3:12815393-12815412 | None:intergenic | 30.0% | |
| TTGAATGTAATCATATGTGC+TGG | + | chr6_3:12815656-12815675 | Msa0940420:intron | 30.0% | |
| TGAATGATTTGAGCATAATC+AGG | + | chr6_3:12815931-12815950 | Msa0940420:intron | 30.0% | |
| ATAAACATAATCGCATGTGT+CGG | + | chr6_3:12816271-12816290 | Msa0940420:intron | 30.0% | |
| !!! | AGGTTCTTGTTTTTGTTTAC+AGG | + | chr6_3:12816576-12816595 | Msa0940420:intron | 30.0% |
| AGCTTAAGCTTGATATTTCT+AGG | + | chr6_3:12816743-12816762 | Msa0940420:CDS | 30.0% | |
| GTTGAAGATGTTTGATGAAT+TGG | + | chr6_3:12816768-12816787 | Msa0940420:CDS | 30.0% | |
| ! | TGAATTGGCTGGTAATTTTT+CGG | + | chr6_3:12816783-12816802 | Msa0940420:CDS | 30.0% |
| GTTAAAGATTCAGAAGTTGA+AGG | + | chr6_3:12816960-12816979 | Msa0940420:CDS | 30.0% | |
| ! | TTTTTCATGTCGTTACAAAC+AGG | + | chr6_3:12817265-12817284 | Msa0940420:CDS | 30.0% |
| CTTAAATTCATCGTATGTAC+CGG | + | chr6_3:12817380-12817399 | Msa0940420:CDS | 30.0% | |
| TTTCTCTCATCCTTTAATCA+AGG | + | chr6_3:12817704-12817723 | Msa0940420:CDS | 30.0% | |
| AGGTTACAATAACTACAAGT+AGG | - | chr6_3:12817850-12817869 | None:intergenic | 30.0% | |
| GAGTTTCATCATAATTAACC+GGG | + | chr6_3:12818230-12818249 | Msa0940420:intron | 30.0% | |
| ATCTATTTGAACATGAATCC+CGG | - | chr6_3:12818251-12818270 | None:intergenic | 30.0% | |
| CAGTAGAGATTCATATTGAT+TGG | + | chr6_3:12818274-12818293 | Msa0940420:intron | 30.0% | |
| TTAAATAGGTTACCGTAAAG+TGG | + | chr6_3:12818402-12818421 | Msa0940420:intron | 30.0% | |
| AATTAGTGAGTTCCACTTTA+CGG | - | chr6_3:12818417-12818436 | None:intergenic | 30.0% | |
| ATACAATCCAAGTATTAGCA+TGG | + | chr6_3:12818565-12818584 | Msa0940420:CDS | 30.0% | |
| TAAATATGTTGACAGCGATA+TGG | + | chr6_3:12818679-12818698 | Msa0940420:CDS | 30.0% | |
| ATAAACCAAAATTGCACATC+TGG | - | chr6_3:12818712-12818731 | None:intergenic | 30.0% | |
| GAATTTGATAAGTGTGTGTG+TGG | - | chr6_3:12815005-12815024 | None:intergenic | 35.0% | |
| ACATAGCAGAGATAAAGATC+CGG | - | chr6_3:12815292-12815311 | None:intergenic | 35.0% | |
| ! | GAGTCATCATTTTCTGTAGA+AGG | - | chr6_3:12815362-12815381 | None:intergenic | 35.0% |
| ATCCTATCAAGTGTTTGTGT+CGG | - | chr6_3:12815580-12815599 | None:intergenic | 35.0% | |
| !! | TGTAATCATATGTGCTGGTT+TGG | + | chr6_3:12815661-12815680 | Msa0940420:intron | 35.0% |
| ATGATTTGAGCATAATCAGG+TGG | + | chr6_3:12815934-12815953 | Msa0940420:intron | 35.0% | |
| TGATTTGAGCATAATCAGGT+GGG | + | chr6_3:12815935-12815954 | Msa0940420:intron | 35.0% | |
| GATGAACTGAATGAATCTTG+TGG | + | chr6_3:12816173-12816192 | Msa0940420:intron | 35.0% | |
| TGTTTGTGTTAGTGCTTCAT+AGG | - | chr6_3:12816204-12816223 | None:intergenic | 35.0% | |
| ! | ATGAAGCACTAACACAAACA+TGG | + | chr6_3:12816204-12816223 | Msa0940420:intron | 35.0% |
| GACATCTCTAATCAAAGTTG+TGG | - | chr6_3:12816307-12816326 | None:intergenic | 35.0% | |
| TGTTTACATGATCCTACTAC+TGG | + | chr6_3:12816356-12816375 | Msa0940420:intron | 35.0% | |
| ACATATGCATTACCAGTAGT+AGG | - | chr6_3:12816371-12816390 | None:intergenic | 35.0% | |
| ! | TACAAAGGGTGTAACGAATT+AGG | + | chr6_3:12816556-12816575 | Msa0940420:intron | 35.0% |
| ACATATGCATTACCAGTAGT+AGG | - | chr6_3:12816371-12816390 | None:intergenic | 35.0% | |
| AAGATGTTTGATGAATTGGC+TGG | + | chr6_3:12816772-12816791 | Msa0940420:CDS | 35.0% | |
| GCAGTTTGAGAAAGAGATTA+AGG | + | chr6_3:12816879-12816898 | Msa0940420:CDS | 35.0% | |
| ! | TGTTAATGAGTCACTTGCTA+AGG | + | chr6_3:12816996-12817015 | Msa0940420:CDS | 35.0% |
| TTTCATCTCTATACTTCTCC+GGG | - | chr6_3:12817122-12817141 | None:intergenic | 35.0% | |
| CTTTCATCTCTATACTTCTC+CGG | - | chr6_3:12817123-12817142 | None:intergenic | 35.0% | |
| AGTATAGAGATGAAAGTCCT+AGG | + | chr6_3:12817127-12817146 | Msa0940420:CDS | 35.0% | |
| AAACTTGGATCTTCAAACTC+CGG | - | chr6_3:12817153-12817172 | None:intergenic | 35.0% | |
| ACATGAAAAACATGCTTCCA+TGG | - | chr6_3:12817255-12817274 | None:intergenic | 35.0% | |
| ATGTTGCTGCAATGAAAGTT+TGG | + | chr6_3:12817292-12817311 | Msa0940420:CDS | 35.0% | |
| ! | AGTTTGGTTTAAAATGAGGC+CGG | + | chr6_3:12817308-12817327 | Msa0940420:CDS | 35.0% |
| CAGCATTACATTGAGAATCA+AGG | + | chr6_3:12817435-12817454 | Msa0940420:CDS | 35.0% | |
| CATTGAGAATCAAGGTGATA+AGG | + | chr6_3:12817443-12817462 | Msa0940420:CDS | 35.0% | |
| !! | ACTTTTGGATGATGATGTTG+TGG | + | chr6_3:12817575-12817594 | Msa0940420:CDS | 35.0% |
| AGGTTTGTGGAAGATTGATT+TGG | + | chr6_3:12817614-12817633 | Msa0940420:CDS | 35.0% | |
| !! | TTGTGGAAGATTGATTTGGA+TGG | + | chr6_3:12817618-12817637 | Msa0940420:CDS | 35.0% |
| !! | TGTGGAAGATTGATTTGGAT+GGG | + | chr6_3:12817619-12817638 | Msa0940420:CDS | 35.0% |
| AATTCACGTACTGCGAATAT+CGG | - | chr6_3:12817686-12817705 | None:intergenic | 35.0% | |
| TTGAAGGTCTCCTTGATTAA+AGG | - | chr6_3:12817717-12817736 | None:intergenic | 35.0% | |
| TATTTGATCTTGATGCTTGG+AGG | + | chr6_3:12817772-12817791 | Msa0940420:CDS | 35.0% | |
| ! | ATAGAGAAGCAAAGCATTAC+AGG | - | chr6_3:12817870-12817889 | None:intergenic | 35.0% |
| TAAATGACTACCCTGAGTTT+AGG | + | chr6_3:12818165-12818184 | Msa0940420:intron | 35.0% | |
| TGAATTACTGCCTAAACTCA+GGG | - | chr6_3:12818178-12818197 | None:intergenic | 35.0% | |
| ATGAATTACTGCCTAAACTC+AGG | - | chr6_3:12818179-12818198 | None:intergenic | 35.0% | |
| TTGTAAGATACTGATAGCCA+TGG | + | chr6_3:12818336-12818355 | Msa0940420:intron | 35.0% | |
| GATCATTATTCAAGAGACCA+TGG | - | chr6_3:12818356-12818375 | None:intergenic | 35.0% | |
| AGACCAGACAATATGGAAAT+CGG | + | chr6_3:12818463-12818482 | Msa0940420:CDS | 35.0% | |
| TAAAAGGTAATCAAACCAGG+TGG | - | chr6_3:12818497-12818516 | None:intergenic | 35.0% | |
| GAGTAAAAGGTAATCAAACC+AGG | - | chr6_3:12818500-12818519 | None:intergenic | 35.0% | |
| TGACTTCGTTGTTGAGTAAA+AGG | - | chr6_3:12818513-12818532 | None:intergenic | 35.0% | |
| ATCTCATCCATGCTAATACT+TGG | - | chr6_3:12818575-12818594 | None:intergenic | 35.0% | |
| GCTGCTGTTATTCATTACAA+TGG | + | chr6_3:12818602-12818621 | Msa0940420:CDS | 35.0% | |
| ACAATGGAAACATGAAACCT+TGG | + | chr6_3:12818618-12818637 | Msa0940420:CDS | 35.0% | |
| TTCAAAGCAATATCTAGCCA+AGG | - | chr6_3:12818638-12818657 | None:intergenic | 35.0% | |
| AAGAATATGGTAAACCACAG+TGG | - | chr6_3:12818788-12818807 | None:intergenic | 35.0% | |
| ATCAACAACGAATTCTCAGA+TGG | - | chr6_3:12818896-12818915 | None:intergenic | 35.0% | |
| ! | CAAGAGAGTACAAGATCCAA+TGG | + | chr6_3:12815211-12815230 | Msa0940420:exon | 40.0% |
| GTAAGAGAAGAATCCACGAA+GGG | - | chr6_3:12815270-12815289 | None:intergenic | 40.0% | |
| TTCGTGGATTCTTCTCTTAC+CGG | + | chr6_3:12815270-12815289 | Msa0940420:CDS | 40.0% | |
| GTAGTGTAACCTATGAAGCA+CGG | + | chr6_3:12815551-12815570 | Msa0940420:intron | 40.0% | |
| GAATGAGTGAACGAATCTTG+TGG | + | chr6_3:12815834-12815853 | Msa0940420:intron | 40.0% | |
| !! | TAGAAGTACCGACATAGACA+CGG | + | chr6_3:12815865-12815884 | Msa0940420:intron | 40.0% |
| ! | ATCAGAGGGTGTAAGGAATT+AGG | + | chr6_3:12815992-12816011 | Msa0940420:intron | 40.0% |
| GAACTGAATGAATCTTGTGG+TGG | + | chr6_3:12816176-12816195 | Msa0940420:intron | 40.0% | |
| TCTCTAATCAAAGTTGTGGC+AGG | - | chr6_3:12816303-12816322 | None:intergenic | 40.0% | |
| ATTAGAGATGTCAGTGCAGA+GGG | + | chr6_3:12816315-12816334 | Msa0940420:intron | 40.0% | |
| ! | TGCAGAGGGTGTAACAAATT+AGG | + | chr6_3:12816329-12816348 | Msa0940420:intron | 40.0% |
| !!! | AATCGCTTTTTTTAAGCGCG+CGG | - | chr6_3:12816427-12816446 | None:intergenic | 40.0% |
| TGTTACTCACACATAGATCC+CGG | + | chr6_3:12816446-12816465 | Msa0940420:intron | 40.0% | |
| CTTGACACACCTTTGATTAG+AGG | + | chr6_3:12816524-12816543 | Msa0940420:intron | 40.0% | |
| ! | ACACCTTTGATTAGAGGTGT+CGG | + | chr6_3:12816530-12816549 | Msa0940420:intron | 40.0% |
| TTACAGGATCTTCCTACTAC+TGG | + | chr6_3:12816592-12816611 | Msa0940420:intron | 40.0% | |
| CATTGAAATCTGACCCACTT+AGG | + | chr6_3:12816644-12816663 | Msa0940420:CDS | 40.0% | |
| AATCCACTCTTGTCCTAAGT+GGG | - | chr6_3:12816660-12816679 | None:intergenic | 40.0% | |
| AAATCCACTCTTGTCCTAAG+TGG | - | chr6_3:12816661-12816680 | None:intergenic | 40.0% | |
| ATGCTTATGCTGCATATGCT+AGG | + | chr6_3:12816719-12816738 | Msa0940420:CDS | 40.0% | |
| CTCAACACATCCTCATCAAT+CGG | - | chr6_3:12816859-12816878 | None:intergenic | 40.0% | |
| CTTGCTAAGGCAAAGAAGAA+CGG | + | chr6_3:12817009-12817028 | Msa0940420:CDS | 40.0% | |
| TTGCTAAGGCAAAGAAGAAC+GGG | + | chr6_3:12817010-12817029 | Msa0940420:CDS | 40.0% | |
| CAAACTCTTGGGAACTGATT+TGG | - | chr6_3:12817058-12817077 | None:intergenic | 40.0% | |
| AGACAACGTGATAGCTGTAT+CGG | + | chr6_3:12817194-12817213 | Msa0940420:CDS | 40.0% | |
| TAAAGAATGCAGTTGAGCCA+TGG | + | chr6_3:12817235-12817254 | Msa0940420:CDS | 40.0% | |
| ! | TTTAAAATGAGGCCGGTTGA+AGG | + | chr6_3:12817315-12817334 | Msa0940420:CDS | 40.0% |
| TTAAAATGAGGCCGGTTGAA+GGG | + | chr6_3:12817316-12817335 | Msa0940420:CDS | 40.0% | |
| ! | TGATGATGTTGTGGTGCAAA+AGG | + | chr6_3:12817584-12817603 | Msa0940420:CDS | 40.0% |
| AAAAGGACTTGACAGGTTTG+TGG | + | chr6_3:12817601-12817620 | Msa0940420:CDS | 40.0% | |
| !! | GAAGATTGATTTGGATGGGA+AGG | + | chr6_3:12817623-12817642 | Msa0940420:CDS | 40.0% |
| AGAACCGAAACAGATCTCTA+CGG | - | chr6_3:12817658-12817677 | None:intergenic | 40.0% | |
| ! | AGCACATGCTTTTGGATTGA+AGG | - | chr6_3:12817733-12817752 | None:intergenic | 40.0% |
| ! | TCAATCCAAAAGCATGTGCT+TGG | + | chr6_3:12817733-12817752 | Msa0940420:CDS | 40.0% |
| ! | TAAGTCCAAGCACATGCTTT+TGG | - | chr6_3:12817741-12817760 | None:intergenic | 40.0% |
| AAAGCATGTGCTTGGACTTA+TGG | + | chr6_3:12817741-12817760 | Msa0940420:CDS | 40.0% | |
| GCACAGAACATTACCATTAC+TGG | + | chr6_3:12817805-12817824 | Msa0940420:CDS | 40.0% | |
| TTACCATTACTGGCAGAACA+AGG | + | chr6_3:12817815-12817834 | Msa0940420:CDS | 40.0% | |
| TTACCTTGTTCTGCCAGTAA+TGG | - | chr6_3:12817821-12817840 | None:intergenic | 40.0% | |
| AGAACGAAGACCAGACAATA+TGG | + | chr6_3:12818456-12818475 | Msa0940420:intron | 40.0% | |
| GACCAGACAATATGGAAATC+GGG | + | chr6_3:12818464-12818483 | Msa0940420:CDS | 40.0% | |
| ACCAGACAATATGGAAATCG+GGG | + | chr6_3:12818465-12818484 | Msa0940420:CDS | 40.0% | |
| TTACTCAACAACGAAGTCAC+TGG | + | chr6_3:12818514-12818533 | Msa0940420:CDS | 40.0% | |
| GACAAATCATGGCATGTACT+CGG | + | chr6_3:12818536-12818555 | Msa0940420:CDS | 40.0% | |
| ! | TTCGTCCAGATGTGCAATTT+TGG | + | chr6_3:12818704-12818723 | Msa0940420:CDS | 40.0% |
| GACAATACAGAACTTTCCTG+TGG | - | chr6_3:12818847-12818866 | None:intergenic | 40.0% | |
| GATGATTGTCAGATGCTACA+AGG | + | chr6_3:12818913-12818932 | Msa0940420:three_prime_UTR | 40.0% | |
| ! | GAGAGTACAAGATCCAATGG+CGG | + | chr6_3:12815214-12815233 | Msa0940420:exon | 45.0% |
| GGTAAGAGAAGAATCCACGA+AGG | - | chr6_3:12815271-12815290 | None:intergenic | 45.0% | |
| CACCGACACAAACACTTGAT+AGG | + | chr6_3:12815575-12815594 | Msa0940420:intron | 45.0% | |
| ! | CGGTGTCAATCTCTTAGTGT+CGG | - | chr6_3:12815894-12815913 | None:intergenic | 45.0% |
| CGACACTAAGAGATTGACAC+CGG | + | chr6_3:12815892-12815911 | Msa0940420:intron | 45.0% | |
| CTAATCAAAGTTGTGGCAGG+TGG | - | chr6_3:12816300-12816319 | None:intergenic | 45.0% | |
| GATTAGAGATGTCAGTGCAG+AGG | + | chr6_3:12816314-12816333 | Msa0940420:intron | 45.0% | |
| GTTCCGACACCTCTAATCAA+AGG | - | chr6_3:12816536-12816555 | None:intergenic | 45.0% | |
| !! | TAGAGGTGTCGGAACTACAA+AGG | + | chr6_3:12816541-12816560 | Msa0940420:intron | 45.0% |
| !! | AGAGGTGTCGGAACTACAAA+GGG | + | chr6_3:12816542-12816561 | Msa0940420:intron | 45.0% |
| CGATTGATGAGGATGTGTTG+AGG | + | chr6_3:12816857-12816876 | Msa0940420:CDS | 45.0% | |
| AGGATAGAGTGAAGATTGCG+AGG | + | chr6_3:12816899-12816918 | Msa0940420:CDS | 45.0% | |
| TGCGAGGATGATGATTGTTG+AGG | + | chr6_3:12816915-12816934 | Msa0940420:CDS | 45.0% | |
| TGCTAAGGCAAAGAAGAACG+GGG | + | chr6_3:12817011-12817030 | Msa0940420:CDS | 45.0% | |
| TCCCAAGAGTTTGCATTGCT+TGG | + | chr6_3:12817065-12817084 | Msa0940420:CDS | 45.0% | |
| GCCAAGCAATGCAAACTCTT+GGG | - | chr6_3:12817069-12817088 | None:intergenic | 45.0% | |
| AGCCAAGCAATGCAAACTCT+TGG | - | chr6_3:12817070-12817089 | None:intergenic | 45.0% | |
| TTGCTTGGCTATGAGACTGA+TGG | + | chr6_3:12817080-12817099 | Msa0940420:CDS | 45.0% | |
| TGCTTGGCTATGAGACTGAT+GGG | + | chr6_3:12817081-12817100 | Msa0940420:CDS | 45.0% | |
| TAGAGATGAAAGTCCTAGGC+CGG | + | chr6_3:12817131-12817150 | Msa0940420:CDS | 45.0% | |
| TAAAATGAGGCCGGTTGAAG+GGG | + | chr6_3:12817317-12817336 | Msa0940420:CDS | 45.0% | |
| AAAAATGCACCCCCTTCAAC+CGG | - | chr6_3:12817330-12817349 | None:intergenic | 45.0% | |
| GTCCAACATCGACAGGTATT+TGG | - | chr6_3:12817505-12817524 | None:intergenic | 45.0% | |
| GAAGATAGTCCAACATCGAC+AGG | - | chr6_3:12817512-12817531 | None:intergenic | 45.0% | |
| ! | CGCAATTTAGGGTACATCTC+TGG | - | chr6_3:12817546-12817565 | None:intergenic | 45.0% |
| GATTTGGATGGGAAGGTGAA+TGG | + | chr6_3:12817630-12817649 | Msa0940420:CDS | 45.0% | |
| ! | TCTCGATTCGACAATCATGC+AGG | - | chr6_3:12817964-12817983 | None:intergenic | 45.0% |
| TCCCCGATTTCCATATTGTC+TGG | - | chr6_3:12818469-12818488 | None:intergenic | 45.0% | |
| CGAAGTCACTGGACAAATCA+TGG | + | chr6_3:12818525-12818544 | Msa0940420:CDS | 45.0% | |
| TCATGGCATGTACTCGGATT+AGG | + | chr6_3:12818542-12818561 | Msa0940420:CDS | 45.0% | |
| ! | TTGAGATGAAGTGTCCACTG+TGG | + | chr6_3:12818771-12818790 | Msa0940420:three_prime_UTR | 45.0% |
| TGTTAAATGGTGCATGCCAC+AGG | + | chr6_3:12818828-12818847 | Msa0940420:three_prime_UTR | 45.0% | |
| CAAGATCCAATGGCGGTTTC+TGG | + | chr6_3:12815221-12815240 | Msa0940420:exon | 50.0% | |
| !! | GTTTCTGGTAGAGGAAGCAG+AGG | + | chr6_3:12815236-12815255 | Msa0940420:CDS | 50.0% |
| AGCATAATCAGGTGGGACAC+TGG | + | chr6_3:12815942-12815961 | Msa0940420:intron | 50.0% | |
| TCCTTACACCCTCTGATGCA+CGG | - | chr6_3:12815989-12816008 | None:intergenic | 50.0% | |
| !! | TGGCACTGACACATGAACAC+TGG | + | chr6_3:12816224-12816243 | Msa0940420:intron | 50.0% |
| TGACCCACTTAGGACAAGAG+TGG | + | chr6_3:12816654-12816673 | Msa0940420:CDS | 50.0% | |
| AACAACGACGCTCTGTACGT+TGG | - | chr6_3:12816823-12816842 | None:intergenic | 50.0% | |
| !! | CAGAGCGTCGTTGTTTGAGT+CGG | + | chr6_3:12816828-12816847 | Msa0940420:CDS | 50.0% |
| GGGTGAGAAGATTTCGAACC+CGG | + | chr6_3:12817101-12817120 | Msa0940420:CDS | 50.0% | |
| CAACGTGATAGCTGTATCGG+TGG | + | chr6_3:12817197-12817216 | Msa0940420:CDS | 50.0% | |
| ! | ATCGGTGGTGGTTAGATCTG+TGG | + | chr6_3:12817212-12817231 | Msa0940420:CDS | 50.0% |
| AAAATGAGGCCGGTTGAAGG+GGG | + | chr6_3:12817318-12817337 | Msa0940420:CDS | 50.0% | |
| ! | CATCGTATGTACCGGTGTTG+AGG | + | chr6_3:12817388-12817407 | Msa0940420:CDS | 50.0% |
| CGCCAAATACCTGTCGATGT+TGG | + | chr6_3:12817500-12817519 | Msa0940420:CDS | 50.0% | |
| GTGGTGCAAAAGGACTTGAC+AGG | + | chr6_3:12817594-12817613 | Msa0940420:CDS | 50.0% | |
| ! | GGTGCCGTAGAGATCTGTTT+CGG | + | chr6_3:12817651-12817670 | Msa0940420:CDS | 50.0% |
| TCACGTACTGCGAATATCGG+TGG | - | chr6_3:12817683-12817702 | None:intergenic | 50.0% | |
| CCTCTACCAGAAACCGCCAT+TGG | - | chr6_3:12815230-12815249 | None:intergenic | 55.0% | |
| !! | CCAATGGCGGTTTCTGGTAG+AGG | + | chr6_3:12815227-12815246 | Msa0940420:exon | 55.0% |
| TCTGGTAGAGGAAGCAGAGG+TGG | + | chr6_3:12815239-12815258 | Msa0940420:CDS | 55.0% | |
| AGAGGTGGATCTACCCTTCG+TGG | + | chr6_3:12815254-12815273 | Msa0940420:CDS | 55.0% | |
| ! | TGTCGGTGTCCGTGCTTCAT+AGG | - | chr6_3:12815563-12815582 | None:intergenic | 55.0% |
| ! | GTCGGTGTCCGTGTCTATGT+CGG | - | chr6_3:12815876-12815895 | None:intergenic | 55.0% |
| ACTGGAGACAGGACACACCA+AGG | + | chr6_3:12815960-12815979 | Msa0940420:intron | 55.0% | |
| ! | CAAGGTGTCCGTGCATCAGA+GGG | + | chr6_3:12815978-12815997 | Msa0940420:intron | 55.0% |
| ! | TCCGTGCATCAGAGGGTGTA+AGG | + | chr6_3:12815985-12816004 | Msa0940420:intron | 55.0% |
| GCGTCGTTGTTTGAGTCGGA+TGG | + | chr6_3:12816832-12816851 | Msa0940420:CDS | 55.0% | |
| GTCGGATGGTCCGATTGATG+AGG | + | chr6_3:12816846-12816865 | Msa0940420:CDS | 55.0% | |
| GGCAAAGAAGAACGGGGCAT+TGG | + | chr6_3:12817017-12817036 | Msa0940420:CDS | 55.0% | |
| GGATCTTCAAACTCCGGCCT+AGG | - | chr6_3:12817147-12817166 | None:intergenic | 55.0% | |
| ! | CGTGATAGCTGTATCGGTGG+TGG | + | chr6_3:12817200-12817219 | Msa0940420:CDS | 55.0% |
| ! | ACCGGTGTTGAGGCAAGTTG+AGG | + | chr6_3:12817398-12817417 | Msa0940420:CDS | 55.0% |
| GCCTCAACTTGCCTCAACAC+CGG | - | chr6_3:12817402-12817421 | None:intergenic | 55.0% | |
| TCAGGTGGGACACTGGAGAC+AGG | + | chr6_3:12815949-12815968 | Msa0940420:intron | 60.0% | |
| CCTCTGATGCACGGACACCT+TGG | - | chr6_3:12815980-12815999 | None:intergenic | 60.0% | |
| ! | CCAAGGTGTCCGTGCATCAG+AGG | + | chr6_3:12815977-12815996 | Msa0940420:intron | 60.0% |
| AAATCGGGGACGCTTCCACC+TGG | + | chr6_3:12818479-12818498 | Msa0940420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 12814985 | 12819165 | 12814985 | ID=Msa0940420;Name=Msa0940420 |
| chr6_3 | mRNA | 12814985 | 12819165 | 12814985 | ID=Msa0940420-mRNA-1;Parent=Msa0940420;Name=Msa0940420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=245|1|1|1|1|1|3|432|555 |
| chr6_3 | exon | 12814985 | 12815382 | 12814985 | ID=Msa0940420-mRNA-1:exon:4186;Parent=Msa0940420-mRNA-1 |
| chr6_3 | exon | 12816598 | 12817836 | 12816598 | ID=Msa0940420-mRNA-1:exon:4187;Parent=Msa0940420-mRNA-1 |
| chr6_3 | exon | 12818458 | 12819165 | 12818458 | ID=Msa0940420-mRNA-1:exon:4188;Parent=Msa0940420-mRNA-1 |
| chr6_3 | five_prime_UTR | 12814985 | 12815229 | 12814985 | ID=Msa0940420-mRNA-1:five_prime_utr;Parent=Msa0940420-mRNA-1 |
| chr6_3 | CDS | 12815230 | 12815382 | 12815230 | ID=Msa0940420-mRNA-1:cds;Parent=Msa0940420-mRNA-1 |
| chr6_3 | CDS | 12816598 | 12817836 | 12816598 | ID=Msa0940420-mRNA-1:cds;Parent=Msa0940420-mRNA-1 |
| chr6_3 | CDS | 12818458 | 12818733 | 12818458 | ID=Msa0940420-mRNA-1:cds;Parent=Msa0940420-mRNA-1 |
| chr6_3 | three_prime_UTR | 12818734 | 12819165 | 12818734 | ID=Msa0940420-mRNA-1:three_prime_utr;Parent=Msa0940420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
