AlfalfaGEDB | Msa1459910

M. sativa cultivar zhongmu-4 / Msa1459910

KEGG: K14411
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459910	KEH28480.1	98.174	493	8	1	1	492	1	493	0.0	952

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459910	sp\|Q8W034\|RNP1_ARATH	56.995	193	77	2	1	188	1	192	1.80e-74	243

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459910	A0A072URI5	98.174	493	8	1	1	492	1	493	0.0	952

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012940	Msa1459910	0.852593	4.169302e-61	-8.615850e-47
Msa0016540	Msa1459910	0.824554	7.580295e-54	-8.615850e-47
Msa0032020	Msa1459910	0.865400	6.069496e-65	-8.615850e-47
Msa0033880	Msa1459910	0.815564	8.667066e-52	-8.615850e-47
Msa0041690	Msa1459910	0.836502	9.011357e-57	-8.615850e-47
Msa0047640	Msa1459910	0.832721	8.040234e-56	-8.615850e-47
Msa0052870	Msa1459910	0.822645	2.120589e-53	-8.615850e-47
Msa0062350	Msa1459910	0.826025	3.401857e-54	-8.615850e-47
Msa0069600	Msa1459910	0.816066	6.695952e-52	-8.615850e-47
Msa0077540	Msa1459910	0.809107	2.228485e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459910	MtrunA17_Chr5g0447761	98.109	476	8	1	1	475	1	476	0.0	919
Msa1459910	MtrunA17_Chr3g0101061	63.825	481	165	7	1	475	35	512	0.0	583
Msa1459910	MtrunA17_Chr2g0290191	58.038	479	192	7	4	475	2	478	1.04e-176	505
Msa1459910	MtrunA17_Chr1g0186351	59.487	195	73	1	1	189	1	195	1.57e-77	250
Msa1459910	MtrunA17_Chr3g0135111	50.777	193	86	2	1	185	5	196	1.10e-55	190
Msa1459910	MtrunA17_Chr6g0449481	42.932	191	92	3	6	193	45	221	2.48e-46	165
Msa1459910	MtrunA17_Chr3g0120721	41.989	181	92	3	6	185	18	186	5.17e-43	155
Msa1459910	MtrunA17_Chr5g0402191	37.234	188	105	2	4	191	2	176	2.28e-35	136
Msa1459910	MtrunA17_Chr5g0402191	28.095	210	117	3	7	183	93	301	6.31e-19	88.6
Msa1459910	MtrunA17_Chr8g0375101	36.181	199	111	4	4	199	2	187	7.43e-34	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459910	AT3G07810.2	64.185	497	152	12	1	476	1	492	0.0	550
Msa1459910	AT3G07810.1	64.315	496	151	12	1	475	1	491	0.0	550
Msa1459910	AT5G47620.1	47.917	480	193	9	1	475	1	428	1.95e-133	393
Msa1459910	AT5G47620.2	47.917	480	193	9	1	475	1	428	1.95e-133	393
Msa1459910	AT5G47620.5	47.917	480	193	9	1	475	1	428	1.95e-133	393
Msa1459910	AT4G26650.2	51.807	498	158	20	3	475	9	449	3.75e-132	390
Msa1459910	AT4G26650.1	51.807	498	158	20	3	475	12	452	5.31e-132	390
Msa1459910	AT5G47620.4	45.817	502	193	10	1	475	1	450	1.93e-128	381
Msa1459910	AT5G55550.2	48.819	508	188	21	1	487	1	457	1.96e-120	361
Msa1459910	AT5G55550.3	48.819	508	188	21	1	487	1	457	1.96e-120	361

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Find 189 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAAGAAAAGGGTG+GGG	0.550920	tig0040546:+4115	Msa1459910:five_prime_UTR
AAATCTTAAGATCTGAGGGG+AGG	0.679194	tig0040546:-4186	Msa1459910:intergenic
AACAATGTGTCACAGGGTAG+TGG	0.527545	tig0040546:+6293	Msa1459910:CDS
AACAGGACTGCCAAACCTAT+TGG	0.383933	tig0040546:-6063	Msa1459910:intergenic
AACATAACCGGGAGAAGTCT+TGG	0.491823	tig0040546:-6567	Msa1459910:intergenic
AAGAAATCTTAAGATCTGAG+GGG	0.735898	tig0040546:-4189	Msa1459900:intergenic
AAGAAGTACTTTGACCAGTT+TGG	0.302105	tig0040546:+5570	Msa1459910:CDS
AAGACGTTTCATGAATTGAA+TGG	0.446280	tig0040546:+5699	Msa1459910:CDS
AAGACTTCTCCCGGTTATGT+TGG	0.531035	tig0040546:+6569	Msa1459910:CDS
AAGCAGTGATAATGAAAGAT+CGG	0.559068	tig0040546:+4868	Msa1459910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAAAAAACTATGAAGAG+AGG	-	tig0040546:4029-4048	None:intergenic	30.0%
AAAAAAGAAGAAGAAAAGGG+TGG	+	tig0040546:4113-4132	Msa1459910:five_prime_UTR	30.0%
AAAAAGAAGAAGAAAAGGGT+GGG	+	tig0040546:4114-4133	Msa1459910:five_prime_UTR	30.0%
ACAATGAGATTAAGAACAGA+GGG	-	tig0040546:4165-4184	Msa1459910:intergenic	30.0%
AAGAAATCTTAAGATCTGAG+GGG	-	tig0040546:4192-4211	Msa1459910:intergenic	30.0%
GAAGAAATCTTAAGATCTGA+GGG	-	tig0040546:4193-4212	Msa1459910:intergenic	30.0%
TGAAGAAATCTTAAGATCTG+AGG	-	tig0040546:4194-4213	Msa1459910:intergenic	30.0%
GATCTTAAGATTTCTTCATC+TGG	+	tig0040546:4196-4215	Msa1459910:five_prime_UTR	30.0%
TTCCATCCAAGATTTGAATT+CGG	+	tig0040546:5122-5141	Msa1459910:intron	30.0%
TCCATCTTAAAATGTAGCTA+AGG	-	tig0040546:5265-5284	Msa1459910:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0040546	gene	3916	6766	3916	ID=Msa1459910;Name=Msa1459910
tig0040546	mRNA	3916	6766	3916	ID=Msa1459910-mRNA-1;Parent=Msa1459910;Name=Msa1459910-mRNA-1;_AED=0.13;_eAED=0.13;_QI=444\|1\|1\|1\|0.33\|0.5\|4\|84\|492
tig0040546	exon	3916	4232	3916	ID=Msa1459910-mRNA-1:exon:22479;Parent=Msa1459910-mRNA-1
tig0040546	exon	4347	4468	4347	ID=Msa1459910-mRNA-1:exon:22480;Parent=Msa1459910-mRNA-1
tig0040546	exon	4763	4989	4763	ID=Msa1459910-mRNA-1:exon:22481;Parent=Msa1459910-mRNA-1
tig0040546	exon	5426	6766	5426	ID=Msa1459910-mRNA-1:exon:22482;Parent=Msa1459910-mRNA-1
tig0040546	five_prime_UTR	3916	4232	3916	ID=Msa1459910-mRNA-1:five_prime_utr;Parent=Msa1459910-mRNA-1
tig0040546	five_prime_UTR	4347	4468	4347	ID=Msa1459910-mRNA-1:five_prime_utr;Parent=Msa1459910-mRNA-1
tig0040546	five_prime_UTR	4763	4767	4763	ID=Msa1459910-mRNA-1:five_prime_utr;Parent=Msa1459910-mRNA-1
tig0040546	CDS	4768	4989	4768	ID=Msa1459910-mRNA-1:cds;Parent=Msa1459910-mRNA-1
tig0040546	CDS	5426	6682	5426	ID=Msa1459910-mRNA-1:cds;Parent=Msa1459910-mRNA-1
tig0040546	three_prime_UTR	6683	6766	6683	ID=Msa1459910-mRNA-1:three_prime_utr;Parent=Msa1459910-mRNA-1

Gene Sequence

>Msa1459910

ATGCAATCCGATAGTGGCAAGCTATTTATCGGTGGAATATCGTGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGAGAGGTTAAGGAAGCAGTGATAATGAAAGATCGGACAACTGGTAGAGCTCGTGGATTTGGTTTCGTTGTTTTCATTGATCCAGCTGTTGCAGATATTGTCGTGCAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGACGATCAGAATGTATTGAGTAGAACTAGCGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGTACTCGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGACCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACATATGATTCTGAAGAAGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCCAAGGAGTTATCCCCAGGACCTACCCGCTCTCCTCTCAGTGGATACAACTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGCTTCAATCAGGGTTATAGTCCAAGTACTGTCAGTGGTTATGGACTTCGGGTGGATGGTAGGTTCAGTCCGGTTGCTGGTGGCCGAAATGCATTTGCACCATTTGGATCTGGTTATGGAATGGGTATGAATTTTGAGCCTGGTTTGAGTCCTGGTTTTGGAGGGAATGCAAATTTCAATGGCAATCTTAGCTATGGACGGGGCTTAAATCCTTACTTCATCAGCGGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGTAACGGAGGAAGCAATTCCTTCTTCAGTTCAGTGACTCGAAACTTGTGGGGGAATGGAAGCCTCAACTATGGATCAAATTCTGCGAATTCCAATGCATACATTGGATCAGGAAGTGGGAATGTTGGAGGAAATGCATTTGGCAATACTGGAGTCAACTGGAGTTCTTCGCCGATTTCTGGACATGGGGGAGGGAACAATGTGTCACAGGGTAGTGGCAATCTTGGATATGGAGGTGGCAACAATGGTTATGGATTGGGGACTGAAGGGTATGGAAGAAGCAGTGGTTCCACTCTTGCACCAACATCTTCATACTCTACATCAAATGGTGGTGGTGTCGATGGAGCTTTTGCTGATTTTTACAACAATTCGGTCTATGGGGACACCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTCGGTTACGGACTTGGTGGCGCACCTTCGGATGTTTCTGCCAAGACTTCTCCCGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGTAAGAGCGACATTTCATACTCATACTTATATCAACTTCTCAGTCAATCAGCATAA

Protein sequence

>Msa1459910

MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFNQGYSPSTVSGYGLRVDGRFSPVAGGRNAFAPFGSGYGMGMNFEPGLSPGFGGNANFNGNLSYGRGLNPYFISGSNRFGSPVGYESGNGGSNSFFSSVTRNLWGNGSLNYGSNSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYNNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRGKSDISYSYLYQLLSQSA*