Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941980 | sp|Q9C514|RS71_ARATH | 81.152 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 3.48e-115 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941980 | G7KN51 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.95e-135 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0339350 | Msa0941980 | 0.818049 | 2.400942e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941980 | MtrunA17_Chr6g0458031 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 3.75e-139 | 385 |
| Msa0941980 | MtrunA17_Chr6g0484891 | 99.476 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 5.94e-139 | 385 |
| Msa0941980 | MtrunA17_Chr8g0379651 | 68.182 | 44 | 6 | 1 | 145 | 188 | 51 | 86 | 7.95e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941980 | AT1G48830.1 | 81.152 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 3.54e-116 | 328 |
| Msa0941980 | AT1G48830.2 | 81.152 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 3.54e-116 | 328 |
| Msa0941980 | AT3G02560.1 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 1.14e-113 | 322 |
| Msa0941980 | AT3G02560.3 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 1.14e-113 | 322 |
| Msa0941980 | AT3G02560.2 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 1.14e-113 | 322 |
| Msa0941980 | AT5G16130.1 | 81.383 | 188 | 35 | 0 | 1 | 188 | 1 | 188 | 3.06e-113 | 320 |
Find 73 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCAAGTTGCCTTTGATTC+TGG | 0.180217 | 6_3:-16163502 | Msa0941980:three_prime_UTR |
| TCGGTATTGTTTCTCTCCTT+TGG | 0.252124 | 6_3:+16163687 | None:intergenic |
| TACAGCCAAGTCGATGTTTC+TGG | 0.252974 | 6_3:-16164692 | Msa0941980:intron |
| TGAGCAGCGGAACCTTTCTT+TGG | 0.264696 | 6_3:+16163960 | None:intergenic |
| TTTGAAATATTATTTATTAT+AGG | 0.266535 | 6_3:-16163420 | Msa0941980:three_prime_UTR |
| AGACATTCTCCGCTGTTTAC+AGG | 0.270663 | 6_3:-16163653 | Msa0941980:CDS |
| AATCCCTTCCTCAATCTATA+TGG | 0.283281 | 6_3:+16164641 | None:intergenic |
| CGGTATTGTTTCTCTCCTTT+GGG | 0.288337 | 6_3:+16163688 | None:intergenic |
| AAATCCATGTCAGGCTTGTT+AGG | 0.290791 | 6_3:-16164613 | Msa0941980:CDS |
| CGCACTAGGTACCGCGTTGA+TGG | 0.384231 | 6_3:-16163855 | Msa0941980:CDS |
| GTCTTCTTCAGTATTTGATC+TGG | 0.398988 | 6_3:-16163373 | Msa0941980:three_prime_UTR |
| CAATCCTCCTGGTGGCAATC+AGG | 0.404585 | 6_3:+16163991 | None:intergenic |
| GTATCCCGTTACTGAGGCTT+AGG | 0.423073 | 6_3:-16163601 | Msa0941980:exon |
| GAATGTCTCCAACTTGTATT+CGG | 0.427405 | 6_3:+16163668 | None:intergenic |
| GCAGCGGAACCTTTCTTTGG+TGG | 0.457036 | 6_3:+16163963 | None:intergenic |
| CTTCAGTATTTGATCTGGAA+TGG | 0.473268 | 6_3:-16163368 | Msa0941980:three_prime_UTR |
| ATCCCTTCCTCAATCTATAT+GGG | 0.481881 | 6_3:+16164642 | None:intergenic |
| TGAACCTAAGCCTCAGTAAC+GGG | 0.482826 | 6_3:+16163597 | None:intergenic |
| TTTGTTTCATGAATTGCATA+TGG | 0.488047 | 6_3:-16163548 | Msa0941980:three_prime_UTR |
| GTGTTACCTGCCGAGATTGT+TGG | 0.493817 | 6_3:-16163882 | Msa0941980:CDS |
| TGCCGAGCCAACTGAATTTG+AGG | 0.494206 | 6_3:-16164979 | Msa0941980:CDS |
| CTTCGATTTCGTTTCTGCAA+AGG | 0.496535 | 6_3:-16166752 | Msa0941980:intron |
| AAAAGCTACATTAATAAACT+AGG | 0.498239 | 6_3:+16163440 | None:intergenic |
| GCTGTTTACAGGAAACTATC+TGG | 0.499187 | 6_3:-16163642 | Msa0941980:CDS |
| ATCAAATACTGAAGAAGACT+TGG | 0.499793 | 6_3:+16163377 | None:intergenic |
| AAGACTTGGAAATAAGCAAA+TGG | 0.501770 | 6_3:+16163391 | None:intergenic |
| AGCAGTAAGTGTACGGCTAC+GGG | 0.503167 | 6_3:+16163932 | None:intergenic |
| ATTGTTCGTCCACCAAAGAA+AGG | 0.505744 | 6_3:-16163972 | Msa0941980:CDS |
| TTCCTCAAATTCAGTTGGCT+CGG | 0.506244 | 6_3:+16164977 | None:intergenic |
| TTCTGGCAACCGCAAGGCTG+TGG | 0.507229 | 6_3:-16164675 | Msa0941980:CDS |
| AGATTGTTGGCAAGCGCACT+AGG | 0.510306 | 6_3:-16163869 | Msa0941980:CDS |
| AATCCATGTCAGGCTTGTTA+GGG | 0.511974 | 6_3:-16164612 | Msa0941980:CDS |
| GATTCCGCAAAATCCATGTC+AGG | 0.518236 | 6_3:-16164622 | Msa0941980:CDS |
| ACTGAATTTGAGGAATCTGT+TGG | 0.520304 | 6_3:-16164969 | Msa0941980:CDS |
| ATTTGAGGAATCTGTTGGAC+AGG | 0.525688 | 6_3:-16164964 | Msa0941980:intron |
| CAAACAAAATCCAGAATCAA+AGG | 0.531464 | 6_3:+16163492 | None:intergenic |
| CAGCAGTAAGTGTACGGCTA+CGG | 0.532367 | 6_3:+16163931 | None:intergenic |
| CGCTTGCCAACAATCTCGGC+AGG | 0.533088 | 6_3:+16163876 | None:intergenic |
| ACTGAGGCTTAGGTTCACTT+AGG | 0.533972 | 6_3:-16163591 | Msa0941980:exon |
| AACAAGTATTGTTAAATGCA+AGG | 0.537282 | 6_3:+16163328 | None:intergenic |
| GTTTGAAGATGTTCACATCA+AGG | 0.540861 | 6_3:-16165025 | Msa0941980:exon |
| AAACAATACCGAATACAAGT+TGG | 0.543122 | 6_3:-16163676 | Msa0941980:CDS |
| TCCATGTCCCATATAGATTG+AGG | 0.544635 | 6_3:-16164649 | Msa0941980:CDS |
| TGGTGGACGAACAATCCTCC+TGG | 0.561389 | 6_3:+16163980 | None:intergenic |
| GCTCCCTAACAAGCCTGACA+TGG | 0.561527 | 6_3:+16164609 | None:intergenic |
| TCCTCAATCTATATGGGACA+TGG | 0.562889 | 6_3:+16164648 | None:intergenic |
| ACAGATTCCTCAAATTCAGT+TGG | 0.566353 | 6_3:+16164972 | None:intergenic |
| CTTTGCAGAAACGAAATCGA+AGG | 0.580318 | 6_3:+16166753 | None:intergenic |
| GTGAACCTAAGCCTCAGTAA+CGG | 0.584684 | 6_3:+16163596 | None:intergenic |
| ATGTTATCCTGATTGCCACC+AGG | 0.588268 | 6_3:-16163998 | Msa0941980:CDS |
| AGTGCGCTTGCCAACAATCT+CGG | 0.589160 | 6_3:+16163872 | None:intergenic |
| CGTGGACAGCAGTAAGTGTA+CGG | 0.599592 | 6_3:+16163925 | None:intergenic |
| CGAGAAGAAATTTAGCGGCA+AGG | 0.600668 | 6_3:-16164585 | Msa0941980:intron |
| AAGAAAATCAGCAAGGACAA+AGG | 0.606288 | 6_3:-16165002 | Msa0941980:CDS |
| TGTCCCATATAGATTGAGGA+AGG | 0.607696 | 6_3:-16164645 | Msa0941980:CDS |
| CGATGTTTCTGGCAACCGCA+AGG | 0.612148 | 6_3:-16164681 | Msa0941980:CDS |
| GAGCTCGAGAAGAAATTTAG+CGG | 0.626349 | 6_3:-16164590 | Msa0941980:CDS |
| GGTTGCCAGAAACATCGACT+TGG | 0.639023 | 6_3:+16164687 | None:intergenic |
| TGATGGATCAAAGATCATGA+AGG | 0.639271 | 6_3:-16163838 | Msa0941980:intron |
| TGTCCACGAGGCAATGCTCG+AGG | 0.642990 | 6_3:-16163910 | Msa0941980:CDS |
| GTCCCATATAGATTGAGGAA+GGG | 0.647191 | 6_3:-16164644 | Msa0941980:CDS |
| CAGTAAGTGTACGGCTACGG+GGG | 0.652122 | 6_3:+16163934 | None:intergenic |
| GTTTGAGTATCCCGTTACTG+AGG | 0.655229 | 6_3:-16163607 | Msa0941980:CDS |
| ATCAAGGAAGAAAATCAGCA+AGG | 0.665247 | 6_3:-16165009 | Msa0941980:CDS |
| CATCCTCGAGCATTGCCTCG+TGG | 0.673479 | 6_3:+16163907 | None:intergenic |
| TTATCCTGATTGCCACCAGG+AGG | 0.673801 | 6_3:-16163995 | Msa0941980:CDS |
| TACACTTACTGCTGTCCACG+AGG | 0.675978 | 6_3:-16163922 | Msa0941980:CDS |
| GCAGTAAGTGTACGGCTACG+GGG | 0.682631 | 6_3:+16163933 | None:intergenic |
| CATGGATAACCACAGCCTTG+CGG | 0.691240 | 6_3:+16164666 | None:intergenic |
| TCTCTCACACTCTCTCTCTG+CGG | 0.710451 | 6_3:-16166790 | Msa0941980:five_prime_UTR |
| AGATAGTTTCCTGTAAACAG+CGG | 0.719077 | 6_3:+16163644 | None:intergenic |
| TGGACGAACAATCCTCCTGG+TGG | 0.731132 | 6_3:+16163983 | None:intergenic |
| TGATCTTTGATCCATCAACG+CGG | 0.833754 | 6_3:+16163844 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTGATTTGATTAAA+TGG | - | chr6_3:16163508-16163527 | Msa0941980:three_prime_UTR | 10.0% |
| !!! | TTTAATTGATTTGATTAAAT+GGG | - | chr6_3:16163509-16163528 | Msa0941980:three_prime_UTR | 10.0% |
| !!! | TTATTTTCTAAAGCTATTTT+GGG | - | chr6_3:16163992-16164011 | Msa0941980:CDS | 15.0% |
| !! | TGATTATATCAGAATTTATT+TGG | - | chr6_3:16164919-16164938 | Msa0941980:intron | 15.0% |
| !! | TTTCATAATTAGATCCATTT+AGG | - | chr6_3:16163631-16163650 | Msa0941980:CDS | 20.0% |
| !!! | GTTATTTTCTAAAGCTATTT+TGG | - | chr6_3:16163991-16164010 | Msa0941980:CDS | 20.0% |
| !!! | TATTTTCTAAAGCTATTTTG+GGG | - | chr6_3:16163993-16164012 | Msa0941980:CDS | 20.0% |
| !!! | TTTAACTTCTATTATAGACA+TGG | + | chr6_3:16164112-16164131 | None:intergenic | 20.0% |
| !!! | TTTAACTTCTATTATAGAGA+TGG | + | chr6_3:16164632-16164651 | None:intergenic | 20.0% |
| !!! | GATTTGAAATCAAAACATAT+TGG | + | chr6_3:16165904-16165923 | None:intergenic | 20.0% |
| !!! | TGATTTTAATTGAATTCTTG+TGG | - | chr6_3:16166352-16166371 | Msa0941980:intron | 20.0% |
| !! | TTCAGGAAAAAAAAATACTT+TGG | - | chr6_3:16166626-16166645 | Msa0941980:intron | 20.0% |
| !! | AAAAGCTACATTAATAAACT+AGG | + | chr6_3:16166652-16166671 | None:intergenic | 20.0% |
| ! | TGTGTTCAAATGATGTAATT+AGG | - | chr6_3:16163439-16163458 | Msa0941980:three_prime_UTR | 25.0% |
| ! | ATATCTTATCTTGCATTACA+GGG | + | chr6_3:16163942-16163961 | None:intergenic | 25.0% |
| ! | TATATCTTATCTTGCATTAC+AGG | + | chr6_3:16163943-16163962 | None:intergenic | 25.0% |
| !!! | ATTTTCTAAAGCTATTTTGG+GGG | - | chr6_3:16163994-16164013 | Msa0941980:CDS | 25.0% |
| ! | TATTACCTAAGCTATATTAG+GGG | + | chr6_3:16164182-16164201 | None:intergenic | 25.0% |
| ! | CTATTACCTAAGCTATATTA+GGG | + | chr6_3:16164183-16164202 | None:intergenic | 25.0% |
| !! | TGTTTTCATAAGCTATGTTA+TGG | - | chr6_3:16164302-16164321 | Msa0941980:intron | 25.0% |
| !! | GTTTTCATAAGCTATGTTAT+GGG | - | chr6_3:16164303-16164322 | Msa0941980:intron | 25.0% |
| !! | TTTTCATAAGCTATGTTATG+GGG | - | chr6_3:16164304-16164323 | Msa0941980:intron | 25.0% |
| !! | TGTTTTCATAAGCTATGTTA+TGG | - | chr6_3:16164302-16164321 | Msa0941980:intron | 25.0% |
| !! | GTTTTCATAAGCTATGTTAT+GGG | - | chr6_3:16164303-16164322 | Msa0941980:intron | 25.0% |
| !! | TTTTCATAAGCTATGTTATG+GGG | - | chr6_3:16164304-16164323 | Msa0941980:intron | 25.0% |
| ! | CCTAAGATAGATTATGAAAA+CGG | + | chr6_3:16164688-16164707 | None:intergenic | 25.0% |
| !! | TTTTCATAATCTATCTTAGG+AGG | - | chr6_3:16164688-16164707 | Msa0941980:CDS | 25.0% |
| ! | AAACTTGAATGACATTTCAA+AGG | + | chr6_3:16164847-16164866 | None:intergenic | 25.0% |
| !!! | TTAAAATTTGTTGTTGTTGC+AGG | - | chr6_3:16165218-16165237 | Msa0941980:intron | 25.0% |
| ! | AATTAAGGATCAAAAGACAA+TGG | + | chr6_3:16165621-16165640 | None:intergenic | 25.0% |
| ! | GTTAAACAAGGTTTCAATTA+AGG | + | chr6_3:16165636-16165655 | None:intergenic | 25.0% |
| !!! | AACTGGAATTTTGTTATGAT+TGG | - | chr6_3:16165705-16165724 | Msa0941980:intron | 25.0% |
| ! | ATTGGAATTTCATTATGAAC+TGG | - | chr6_3:16165723-16165742 | Msa0941980:intron | 25.0% |
| !!! | CAGTTTTAAATCAAACTGTA+GGG | - | chr6_3:16165990-16166009 | Msa0941980:intron | 25.0% |
| ! | TTTGTTTCATGAATTGCATA+TGG | - | chr6_3:16166541-16166560 | Msa0941980:intron | 25.0% |
| !! | AACAAGTATTGTTAAATGCA+AGG | + | chr6_3:16166764-16166783 | None:intergenic | 25.0% |
| ACGAACAGAAACATAGTATT+AGG | + | chr6_3:16163413-16163432 | None:intergenic | 30.0% | |
| ! | GTCATGTTTTACTTGTGAAA+TGG | - | chr6_3:16163561-16163580 | Msa0941980:three_prime_UTR | 30.0% |
| AAGCTTAAGCTACATTTCTA+CGG | - | chr6_3:16163707-16163726 | Msa0941980:intron | 30.0% | |
| TATCATTCATAAGCACGTTA+AGG | - | chr6_3:16163782-16163801 | Msa0941980:intron | 30.0% | |
| TATCTTATCTTGCATTACAG+GGG | + | chr6_3:16163941-16163960 | None:intergenic | 30.0% | |
| ! | GTTTTTGTATAAGCTGTAAG+CGG | - | chr6_3:16164145-16164164 | Msa0941980:intron | 30.0% |
| ATTACCTAAGCTATATTAGG+GGG | + | chr6_3:16164181-16164200 | None:intergenic | 30.0% | |
| GCTATTACCTAAGCTATATT+AGG | + | chr6_3:16164184-16164203 | None:intergenic | 30.0% | |
| !! | CACGTTTATAAGTTGTTTTC+AGG | + | chr6_3:16164343-16164362 | None:intergenic | 30.0% |
| ATAGGTATAAGCTATTACCT+AGG | + | chr6_3:16164194-16164213 | None:intergenic | 30.0% | |
| !! | CACGTTTATAAGTTGTTTTC+AGG | + | chr6_3:16164343-16164362 | None:intergenic | 30.0% |
| ! | CCGTTTTCATAATCTATCTT+AGG | - | chr6_3:16164685-16164704 | Msa0941980:CDS | 30.0% |
| AAGTGTTTATGCTAGTAAAG+AGG | - | chr6_3:16164796-16164815 | Msa0941980:intron | 30.0% | |
| AGTGTTTATGCTAGTAAAGA+GGG | - | chr6_3:16164797-16164816 | Msa0941980:intron | 30.0% | |
| AATGACTCTATACAGAACAA+AGG | + | chr6_3:16165548-16165567 | None:intergenic | 30.0% | |
| TTGTTCTGTATAGAGTCATT+AGG | - | chr6_3:16165548-16165567 | Msa0941980:intron | 30.0% | |
| GTGCTATAGTAAGTTAAACA+AGG | + | chr6_3:16165648-16165667 | None:intergenic | 30.0% | |
| AATGTGATTGAGGGAAATTA+CGG | + | chr6_3:16165670-16165689 | None:intergenic | 30.0% | |
| !!! | GCAGTTTTAAATCAAACTGT+AGG | - | chr6_3:16165989-16166008 | Msa0941980:intron | 30.0% |
| ! | ATGAAGCATCATGCATATAA+TGG | + | chr6_3:16166037-16166056 | None:intergenic | 30.0% |
| TTTGTTTGATTGAACACAAC+AGG | + | chr6_3:16166311-16166330 | None:intergenic | 30.0% | |
| ! | TTGATTGATACAGGTGTTTT+TGG | - | chr6_3:16166377-16166396 | Msa0941980:intron | 30.0% |
| AAACAATACCGAATACAAGT+TGG | - | chr6_3:16166413-16166432 | Msa0941980:intron | 30.0% | |
| CAAACAAAATCCAGAATCAA+AGG | + | chr6_3:16166600-16166619 | None:intergenic | 30.0% | |
| ! | CTTTGATTCTGGATTTTGTT+TGG | - | chr6_3:16166598-16166617 | Msa0941980:intron | 30.0% |
| AAGACTTGGAAATAAGCAAA+TGG | + | chr6_3:16166701-16166720 | None:intergenic | 30.0% | |
| ATCAAATACTGAAGAAGACT+TGG | + | chr6_3:16166715-16166734 | None:intergenic | 30.0% | |
| ATAGAACGAATCAAAGAGAC+AGG | + | chr6_3:16163381-16163400 | None:intergenic | 35.0% | |
| ACTTGTGAAATGGTTTGATC+TGG | - | chr6_3:16163571-16163590 | Msa0941980:three_prime_UTR | 35.0% | |
| ATCAGTTCTTCATCCAAACA+GGG | + | chr6_3:16163657-16163676 | None:intergenic | 35.0% | |
| AATCAGTTCTTCATCCAAAC+AGG | + | chr6_3:16163658-16163677 | None:intergenic | 35.0% | |
| GAACTTGTGAAAACAGCTTA+TGG | + | chr6_3:16164056-16164075 | None:intergenic | 35.0% | |
| TTTAGGAGAACTTAGTGCAT+AGG | + | chr6_3:16164212-16164231 | None:intergenic | 35.0% | |
| ATGCACTTGTGAGACTATTT+AGG | + | chr6_3:16164229-16164248 | None:intergenic | 35.0% | |
| AAATAGTCTCACAAGTGCAT+AGG | - | chr6_3:16164229-16164248 | Msa0941980:intron | 35.0% | |
| ! | TGTTTTTCACAAGTTCTCCT+AGG | - | chr6_3:16164371-16164390 | Msa0941980:intron | 35.0% |
| TTTAGGAGAACTTAGTGCAT+AGG | + | chr6_3:16164212-16164231 | None:intergenic | 35.0% | |
| ATGCACTTGTGAGACTATTT+AGG | + | chr6_3:16164229-16164248 | None:intergenic | 35.0% | |
| AAATAGTCTCACAAGTGCAT+AGG | - | chr6_3:16164229-16164248 | Msa0941980:intron | 35.0% | |
| GATAGATTATGAAAACGGCT+TGG | + | chr6_3:16164683-16164702 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr6_3:16164820-16164839 | Msa0941980:CDS | 35.0% | |
| ! | TGAGTTCTGACTTTGCATAT+AGG | - | chr6_3:16165042-16165061 | Msa0941980:intron | 35.0% |
| GTTTGAAGATGTTCACATCA+AGG | - | chr6_3:16165064-16165083 | Msa0941980:intron | 35.0% | |
| ATCAAGGAAGAAAATCAGCA+AGG | - | chr6_3:16165080-16165099 | Msa0941980:intron | 35.0% | |
| AAGAAAATCAGCAAGGACAA+AGG | - | chr6_3:16165087-16165106 | Msa0941980:intron | 35.0% | |
| ACAGATTCCTCAAATTCAGT+TGG | + | chr6_3:16165120-16165139 | None:intergenic | 35.0% | |
| ACTGAATTTGAGGAATCTGT+TGG | - | chr6_3:16165120-16165139 | Msa0941980:intron | 35.0% | |
| ATCCCTTCCTCAATCTATAT+GGG | + | chr6_3:16165450-16165469 | None:intergenic | 35.0% | |
| AATCCCTTCCTCAATCTATA+TGG | + | chr6_3:16165451-16165470 | None:intergenic | 35.0% | |
| ! | TTTTGTCACACTACAGTTTC+TGG | - | chr6_3:16165572-16165591 | Msa0941980:intron | 35.0% |
| ATTCCAGTTACAGTTACCAT+CGG | + | chr6_3:16165694-16165713 | None:intergenic | 35.0% | |
| TCAGCGAGAATTACTATCAA+CGG | + | chr6_3:16165931-16165950 | None:intergenic | 35.0% | |
| ! | TTGATTTTCTCCTCAGTATG+AGG | - | chr6_3:16165957-16165976 | Msa0941980:intron | 35.0% |
| GCATCATGCATATAATGGTA+TGG | + | chr6_3:16166032-16166051 | None:intergenic | 35.0% | |
| !! | CTAATGAACCTTTAACTTGC+AGG | - | chr6_3:16166068-16166087 | Msa0941980:intron | 35.0% |
| GATAACATCCTGCAAGTTAA+AGG | + | chr6_3:16166079-16166098 | None:intergenic | 35.0% | |
| ! | TGATGGATCAAAGATCATGA+AGG | - | chr6_3:16166251-16166270 | Msa0941980:intron | 35.0% |
| ! | AACACAACAGGAGTAACTTT+TGG | + | chr6_3:16166299-16166318 | None:intergenic | 35.0% |
| !!! | CTTGTGGTTTTGATTGATAC+AGG | - | chr6_3:16166368-16166387 | Msa0941980:intron | 35.0% |
| GAATGTCTCCAACTTGTATT+CGG | + | chr6_3:16166424-16166443 | None:intergenic | 35.0% | |
| AGATAGTTTCCTGTAAACAG+CGG | + | chr6_3:16166448-16166467 | None:intergenic | 35.0% | |
| !! | GATTTTGTTTGGTGACTTTC+AGG | - | chr6_3:16166609-16166628 | Msa0941980:intron | 35.0% |
| GTCTTCTTCAGTATTTGATC+TGG | - | chr6_3:16166716-16166735 | Msa0941980:intron | 35.0% | |
| CTTCAGTATTTGATCTGGAA+TGG | - | chr6_3:16166721-16166740 | Msa0941980:intron | 35.0% | |
| CTTTGCAGAAACGAAATCGA+AGG | + | chr6_3:16163339-16163358 | None:intergenic | 40.0% | |
| CTTCGATTTCGTTTCTGCAA+AGG | - | chr6_3:16163337-16163356 | Msa0941980:three_prime_UTR | 40.0% | |
| TGCAAAGGTAACAACTTCCT+TGG | - | chr6_3:16163352-16163371 | Msa0941980:three_prime_UTR | 40.0% | |
| CTACATTTCTACGGCATGTT+TGG | - | chr6_3:16163716-16163735 | Msa0941980:intron | 40.0% | |
| TAAGCCCCCTAATATAGCTT+AGG | - | chr6_3:16164174-16164193 | Msa0941980:intron | 40.0% | |
| GTGCACTTGTGAGAATGTTT+AGG | + | chr6_3:16164600-16164619 | None:intergenic | 40.0% | |
| ! | AACACTTCTGAGAGACTGTT+CGG | + | chr6_3:16164783-16164802 | None:intergenic | 40.0% |
| TTCAAAGGACCTGTTTGGAT+TGG | + | chr6_3:16164832-16164851 | None:intergenic | 40.0% | |
| GACATTTCAAAGGACCTGTT+TGG | + | chr6_3:16164837-16164856 | None:intergenic | 40.0% | |
| TTCCTCAAATTCAGTTGGCT+CGG | + | chr6_3:16165115-16165134 | None:intergenic | 40.0% | |
| ATTTGAGGAATCTGTTGGAC+AGG | - | chr6_3:16165125-16165144 | Msa0941980:intron | 40.0% | |
| !! | ATCGACTTGGCTGTAGATTA+TGG | + | chr6_3:16165392-16165411 | None:intergenic | 40.0% |
| TCCATGTCCCATATAGATTG+AGG | - | chr6_3:16165440-16165459 | Msa0941980:intron | 40.0% | |
| TCCTCAATCTATATGGGACA+TGG | + | chr6_3:16165444-16165463 | None:intergenic | 40.0% | |
| TGTCCCATATAGATTGAGGA+AGG | - | chr6_3:16165444-16165463 | Msa0941980:intron | 40.0% | |
| GTCCCATATAGATTGAGGAA+GGG | - | chr6_3:16165445-16165464 | Msa0941980:intron | 40.0% | |
| ! | AAATCCATGTCAGGCTTGTT+AGG | - | chr6_3:16165476-16165495 | Msa0941980:intron | 40.0% |
| !! | AATCCATGTCAGGCTTGTTA+GGG | - | chr6_3:16165477-16165496 | Msa0941980:intron | 40.0% |
| GAGCTCGAGAAGAAATTTAG+CGG | - | chr6_3:16165499-16165518 | Msa0941980:intron | 40.0% | |
| TTCCAGTTACAGTTACCATC+GGG | + | chr6_3:16165693-16165712 | None:intergenic | 40.0% | |
| CTTCGAATAACCTCATACTG+AGG | + | chr6_3:16165970-16165989 | None:intergenic | 40.0% | |
| ATTGTTCGTCCACCAAAGAA+AGG | - | chr6_3:16166117-16166136 | Msa0941980:intron | 40.0% | |
| TGATCTTTGATCCATCAACG+CGG | + | chr6_3:16166248-16166267 | None:intergenic | 40.0% | |
| ! | ACAGGAGTAACTTTTGGATG+TGG | + | chr6_3:16166293-16166312 | None:intergenic | 40.0% |
| ! | CGGTATTGTTTCTCTCCTTT+GGG | + | chr6_3:16166404-16166423 | None:intergenic | 40.0% |
| ! | TCGGTATTGTTTCTCTCCTT+TGG | + | chr6_3:16166405-16166424 | None:intergenic | 40.0% |
| GCTGTTTACAGGAAACTATC+TGG | - | chr6_3:16166447-16166466 | Msa0941980:intron | 40.0% | |
| !! | GTTCAAGTTGCCTTTGATTC+TGG | - | chr6_3:16166587-16166606 | Msa0941980:intron | 40.0% |
| ATCAAAGAGACAGGAGTCCA+AGG | + | chr6_3:16163372-16163391 | None:intergenic | 45.0% | |
| AGATCCATTTAGGCCCTGTT+TGG | - | chr6_3:16163641-16163660 | Msa0941980:CDS | 45.0% | |
| TCATCCAAACAGGGCCTAAA+TGG | + | chr6_3:16163648-16163667 | None:intergenic | 45.0% | |
| ! | TTGCATTACAGGGGCTTGTT+TGG | + | chr6_3:16163932-16163951 | None:intergenic | 45.0% |
| GTGCAGTTGTGAGACTGTTT+GGG | + | chr6_3:16164080-16164099 | None:intergenic | 45.0% | |
| TGTGCAGTTGTGAGACTGTT+TGG | + | chr6_3:16164081-16164100 | None:intergenic | 45.0% | |
| ! | ACACTTCTGAGAGACTGTTC+GGG | + | chr6_3:16164782-16164801 | None:intergenic | 45.0% |
| TACAGCCAAGTCGATGTTTC+TGG | - | chr6_3:16165397-16165416 | Msa0941980:intron | 45.0% | |
| GATTCCGCAAAATCCATGTC+AGG | - | chr6_3:16165467-16165486 | Msa0941980:intron | 45.0% | |
| ! | CAAGCCTGACATGGATTTTG+CGG | + | chr6_3:16165474-16165493 | None:intergenic | 45.0% |
| CGAGAAGAAATTTAGCGGCA+AGG | - | chr6_3:16165504-16165523 | Msa0941980:intron | 45.0% | |
| ACCATCGGGAATGTGATTGA+GGG | + | chr6_3:16165679-16165698 | None:intergenic | 45.0% | |
| TACCATCGGGAATGTGATTG+AGG | + | chr6_3:16165680-16165699 | None:intergenic | 45.0% | |
| TTCCCGATGGTAACTGTAAC+TGG | - | chr6_3:16165688-16165707 | Msa0941980:intron | 45.0% | |
| TGTCCAACACAGTGCTTAGA+CGG | - | chr6_3:16165843-16165862 | Msa0941980:intron | 45.0% | |
| ! | TAACCGTCTAAGCACTGTGT+TGG | + | chr6_3:16165849-16165868 | None:intergenic | 45.0% |
| ATGTTATCCTGATTGCCACC+AGG | - | chr6_3:16166091-16166110 | Msa0941980:intron | 45.0% | |
| !!! | ACAGGTGTTTTTGGACCCAA+AGG | - | chr6_3:16166386-16166405 | Msa0941980:intron | 45.0% |
| AGACATTCTCCGCTGTTTAC+AGG | - | chr6_3:16166436-16166455 | Msa0941980:intron | 45.0% | |
| GTTTGAGTATCCCGTTACTG+AGG | - | chr6_3:16166482-16166501 | Msa0941980:intron | 45.0% | |
| TGAACCTAAGCCTCAGTAAC+GGG | + | chr6_3:16166495-16166514 | None:intergenic | 45.0% | |
| GTGAACCTAAGCCTCAGTAA+CGG | + | chr6_3:16166496-16166515 | None:intergenic | 45.0% | |
| ACTGAGGCTTAGGTTCACTT+AGG | - | chr6_3:16166498-16166517 | Msa0941980:intron | 45.0% | |
| !!! | TTTGAAATATTATTTATTAT+AGG | - | chr6_3:16166669-16166688 | Msa0941980:intron | 5.0% |
| TCTCTCACACTCTCTCTCTG+CGG | - | chr6_3:16163299-16163318 | Msa0941980:three_prime_UTR | 50.0% | |
| TGCCGAGCCAACTGAATTTG+AGG | - | chr6_3:16165110-16165129 | Msa0941980:intron | 50.0% | |
| !! | TGAGCTCACTTTTCAGCTCG+TGG | + | chr6_3:16165269-16165288 | None:intergenic | 50.0% |
| ! | GGTTGCCAGAAACATCGACT+TGG | + | chr6_3:16165405-16165424 | None:intergenic | 50.0% |
| CATGGATAACCACAGCCTTG+CGG | + | chr6_3:16165426-16165445 | None:intergenic | 50.0% | |
| TCCCTCAATCACATTCCCGA+TGG | - | chr6_3:16165675-16165694 | Msa0941980:intron | 50.0% | |
| GCACTGTGTTGGACATCAGA+AGG | + | chr6_3:16165838-16165857 | None:intergenic | 50.0% | |
| TTATCCTGATTGCCACCAGG+AGG | - | chr6_3:16166094-16166113 | Msa0941980:intron | 50.0% | |
| TGAGCAGCGGAACCTTTCTT+TGG | + | chr6_3:16166132-16166151 | None:intergenic | 50.0% | |
| AGCAGTAAGTGTACGGCTAC+GGG | + | chr6_3:16166160-16166179 | None:intergenic | 50.0% | |
| CAGCAGTAAGTGTACGGCTA+CGG | + | chr6_3:16166161-16166180 | None:intergenic | 50.0% | |
| CGTGGACAGCAGTAAGTGTA+CGG | + | chr6_3:16166167-16166186 | None:intergenic | 50.0% | |
| TACACTTACTGCTGTCCACG+AGG | - | chr6_3:16166167-16166186 | Msa0941980:intron | 50.0% | |
| GTGTTACCTGCCGAGATTGT+TGG | - | chr6_3:16166207-16166226 | Msa0941980:intron | 50.0% | |
| AGTGCGCTTGCCAACAATCT+CGG | + | chr6_3:16166220-16166239 | None:intergenic | 50.0% | |
| AGATTGTTGGCAAGCGCACT+AGG | - | chr6_3:16166220-16166239 | Msa0941980:intron | 50.0% | |
| GTATCCCGTTACTGAGGCTT+AGG | - | chr6_3:16166488-16166507 | Msa0941980:intron | 50.0% | |
| !! | CGATGTTTCTGGCAACCGCA+AGG | - | chr6_3:16165408-16165427 | Msa0941980:intron | 55.0% |
| GCTCCCTAACAAGCCTGACA+TGG | + | chr6_3:16165483-16165502 | None:intergenic | 55.0% | |
| CAATCCTCCTGGTGGCAATC+AGG | + | chr6_3:16166101-16166120 | None:intergenic | 55.0% | |
| TGGACGAACAATCCTCCTGG+TGG | + | chr6_3:16166109-16166128 | None:intergenic | 55.0% | |
| ! | TGGTGGACGAACAATCCTCC+TGG | + | chr6_3:16166112-16166131 | None:intergenic | 55.0% |
| GCAGCGGAACCTTTCTTTGG+TGG | + | chr6_3:16166129-16166148 | None:intergenic | 55.0% | |
| CAGTAAGTGTACGGCTACGG+GGG | + | chr6_3:16166158-16166177 | None:intergenic | 55.0% | |
| GCAGTAAGTGTACGGCTACG+GGG | + | chr6_3:16166159-16166178 | None:intergenic | 55.0% | |
| TTCTGGCAACCGCAAGGCTG+TGG | - | chr6_3:16165414-16165433 | Msa0941980:intron | 60.0% | |
| TGTCCACGAGGCAATGCTCG+AGG | - | chr6_3:16166179-16166198 | Msa0941980:intron | 60.0% | |
| ! | CATCCTCGAGCATTGCCTCG+TGG | + | chr6_3:16166185-16166204 | None:intergenic | 60.0% |
| CGCTTGCCAACAATCTCGGC+AGG | + | chr6_3:16166216-16166235 | None:intergenic | 60.0% | |
| ! | CGCACTAGGTACCGCGTTGA+TGG | - | chr6_3:16166234-16166253 | Msa0941980:intron | 60.0% |
| !! | GCTACGGGGGCGCTGAGCAG+CGG | + | chr6_3:16166145-16166164 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 16163278 | 16166833 | 16163278 | ID=Msa0941980;Name=Msa0941980 |
| chr6_3 | mRNA | 16163278 | 16166833 | 16163278 | ID=Msa0941980-mRNA-1;Parent=Msa0941980;Name=Msa0941980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=89|1|1|1|0.8|0.83|6|324|191 |
| chr6_3 | exon | 16163278 | 16163721 | 16163278 | ID=Msa0941980-mRNA-1:exon:4958;Parent=Msa0941980-mRNA-1 |
| chr6_3 | exon | 16163839 | 16164021 | 16163839 | ID=Msa0941980-mRNA-1:exon:4957;Parent=Msa0941980-mRNA-1 |
| chr6_3 | exon | 16164586 | 16164709 | 16164586 | ID=Msa0941980-mRNA-1:exon:4956;Parent=Msa0941980-mRNA-1 |
| chr6_3 | exon | 16164798 | 16164871 | 16164798 | ID=Msa0941980-mRNA-1:exon:4955;Parent=Msa0941980-mRNA-1 |
| chr6_3 | exon | 16164965 | 16165047 | 16164965 | ID=Msa0941980-mRNA-1:exon:4954;Parent=Msa0941980-mRNA-1 |
| chr6_3 | exon | 16166753 | 16166833 | 16166753 | ID=Msa0941980-mRNA-1:exon:4953;Parent=Msa0941980-mRNA-1 |
| chr6_3 | five_prime_UTR | 16166753 | 16166833 | 16166753 | ID=Msa0941980-mRNA-1:five_prime_utr;Parent=Msa0941980-mRNA-1 |
| chr6_3 | five_prime_UTR | 16165040 | 16165047 | 16165040 | ID=Msa0941980-mRNA-1:five_prime_utr;Parent=Msa0941980-mRNA-1 |
| chr6_3 | CDS | 16164965 | 16165039 | 16164965 | ID=Msa0941980-mRNA-1:cds;Parent=Msa0941980-mRNA-1 |
| chr6_3 | CDS | 16164798 | 16164871 | 16164798 | ID=Msa0941980-mRNA-1:cds;Parent=Msa0941980-mRNA-1 |
| chr6_3 | CDS | 16164586 | 16164709 | 16164586 | ID=Msa0941980-mRNA-1:cds;Parent=Msa0941980-mRNA-1 |
| chr6_3 | CDS | 16163839 | 16164021 | 16163839 | ID=Msa0941980-mRNA-1:cds;Parent=Msa0941980-mRNA-1 |
| chr6_3 | CDS | 16163602 | 16163721 | 16163602 | ID=Msa0941980-mRNA-1:cds;Parent=Msa0941980-mRNA-1 |
| chr6_3 | three_prime_UTR | 16163278 | 16163601 | 16163278 | ID=Msa0941980-mRNA-1:three_prime_utr;Parent=Msa0941980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
