Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942020 | AES74990.1 | 69.968 | 313 | 24 | 3 | 1 | 243 | 1 | 313 | 3.36e-127 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942020 | sp|Q9QYL7|ABT1_MOUSE | 51.020 | 98 | 48 | 0 | 76 | 173 | 105 | 202 | 1.28e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0942020 | Msa0979070 | 0.859534 | 3.870185e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942020 | MtrunA17_Chr6g0458071 | 77.470 | 253 | 22 | 2 | 1 | 218 | 1 | 253 | 4.39e-119 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942020 | AT3G56510.2 | 53.254 | 169 | 66 | 2 | 62 | 218 | 86 | 253 | 6.47e-54 | 174 |
| Msa0942020 | AT3G56510.5 | 53.254 | 169 | 66 | 2 | 62 | 218 | 86 | 253 | 6.47e-54 | 174 |
| Msa0942020 | AT3G56510.3 | 53.254 | 169 | 66 | 2 | 62 | 218 | 86 | 253 | 6.47e-54 | 174 |
| Msa0942020 | AT3G56510.1 | 53.254 | 169 | 66 | 2 | 62 | 218 | 86 | 253 | 6.47e-54 | 174 |
| Msa0942020 | AT3G56510.4 | 53.254 | 169 | 66 | 2 | 62 | 218 | 86 | 253 | 6.47e-54 | 174 |
Find 58 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGGCAACACATTTAT+TGG | 0.115118 | 6_3:-16207047 | None:intergenic |
| TTGTTCACCATTTATGTTAT+TGG | 0.148535 | 6_3:-16207074 | None:intergenic |
| CTTCTGAATAAGATTGGTTT+TGG | 0.220354 | 6_3:-16206879 | None:intergenic |
| TCCGTTTCCGATTCCGATTC+CGG | 0.231387 | 6_3:-16205335 | None:intergenic |
| ATAGAAATCTCTCTCTTTCT+TGG | 0.237380 | 6_3:-16207872 | None:intergenic |
| TATTGATTGATCTTCCAATA+TGG | 0.239686 | 6_3:+16209978 | Msa0942020:CDS |
| GTATTTATTCATTTGAATTC+AGG | 0.246483 | 6_3:+16210018 | Msa0942020:exon |
| CTATGACCCTTGCAGGTATT+TGG | 0.250217 | 6_3:+16209939 | Msa0942020:intron |
| ATAATCAAATAACATTATAT+TGG | 0.279653 | 6_3:-16210216 | None:intergenic |
| CTCCCGAGTAGCTCTCTTAA+AGG | 0.293569 | 6_3:-16207821 | None:intergenic |
| CATCTTTCCACTATGACCTT+TGG | 0.342853 | 6_3:+16207665 | Msa0942020:CDS |
| ATCGGAATCGGAAACGGAAA+TGG | 0.349230 | 6_3:+16205340 | Msa0942020:CDS |
| ATTCTAGACAACAATAGATT+TGG | 0.359052 | 6_3:-16210177 | None:intergenic |
| TTCGAATTCGGAACCGGAAT+CGG | 0.361574 | 6_3:+16205322 | Msa0942020:CDS |
| AACATAAATGGTGAACAAAT+AGG | 0.374771 | 6_3:+16207079 | Msa0942020:CDS |
| ATCACCCTTCTGAATAAGAT+TGG | 0.375139 | 6_3:-16206885 | None:intergenic |
| CAGCTATAGGCTTTGTTTGA+GGG | 0.381118 | 6_3:-16209768 | None:intergenic |
| AGGGTTGCCAATAACATAAA+TGG | 0.407509 | 6_3:+16207067 | Msa0942020:CDS |
| TTAGCATTAGCAGCAGCTAT+AGG | 0.414591 | 6_3:-16209781 | None:intergenic |
| TGAAAATTCGAATTCGGAAC+CGG | 0.417888 | 6_3:+16205316 | Msa0942020:CDS |
| GAATGATGAAAATTCGAATT+CGG | 0.431044 | 6_3:+16205310 | Msa0942020:CDS |
| TTCGGAACCGGAATCGGAAT+CGG | 0.432857 | 6_3:+16205328 | Msa0942020:CDS |
| GCAGCTATAGGCTTTGTTTG+AGG | 0.446945 | 6_3:-16209769 | None:intergenic |
| TATGTTATTGGCAACCCTCT+TGG | 0.455964 | 6_3:-16207062 | None:intergenic |
| AAGTAATCTGTATACAAAAC+AGG | 0.458973 | 6_3:+16210059 | Msa0942020:three_prime_UTR |
| AAACAGGCAATAATGTCAAA+TGG | 0.467273 | 6_3:+16210075 | Msa0942020:three_prime_UTR |
| GAGTGCAATCTAAGCGAGCC+CGG | 0.473835 | 6_3:+16206851 | Msa0942020:CDS |
| GATGAAGAAGAAACTGAAGA+TGG | 0.475264 | 6_3:+16205385 | Msa0942020:CDS |
| AGTACGCGACTGGTCAACTT+TGG | 0.475875 | 6_3:-16207899 | None:intergenic |
| ATTGATTGATCTTCCAATAT+GGG | 0.476351 | 6_3:+16209979 | Msa0942020:CDS |
| AAGGTAGCATCACCCCATAT+TGG | 0.484344 | 6_3:-16209992 | None:intergenic |
| TGACCCTTGCAGGTATTTGG+CGG | 0.486470 | 6_3:+16209942 | Msa0942020:intron |
| TAGAAGATCATCTGACAGTT+CGG | 0.489089 | 6_3:-16209815 | None:intergenic |
| ACCGGAATCGGAATCGGAAA+CGG | 0.504799 | 6_3:+16205334 | Msa0942020:CDS |
| CAAAACCAATCTTATTCAGA+AGG | 0.513122 | 6_3:+16206880 | Msa0942020:CDS |
| CAATAAATGTGTTGCCAAGA+GGG | 0.521284 | 6_3:+16207048 | Msa0942020:CDS |
| CAGCCTTTAAGAGAGCTACT+CGG | 0.537546 | 6_3:+16207818 | Msa0942020:intron |
| AGCCTTTAAGAGAGCTACTC+GGG | 0.541936 | 6_3:+16207819 | Msa0942020:intron |
| AGTGCAATCTAAGCGAGCCC+GGG | 0.552088 | 6_3:+16206852 | Msa0942020:CDS |
| TAATATTCCAAAGGTCATAG+TGG | 0.556585 | 6_3:-16207672 | None:intergenic |
| AACACGTGGAAAGAGTGGTT+CGG | 0.563570 | 6_3:+16209740 | Msa0942020:CDS |
| AGTACTTAAGCAAGTTCAAG+TGG | 0.565506 | 6_3:+16207695 | Msa0942020:CDS |
| TCAAATGAATAAATACATCA+AGG | 0.570617 | 6_3:-16210011 | None:intergenic |
| TATAGATGAGAGGTTAAAGA+AGG | 0.576388 | 6_3:+16207930 | Msa0942020:CDS |
| TTAAGTACTTAATATTCCAA+AGG | 0.580883 | 6_3:-16207681 | None:intergenic |
| AAAACCAATCTTATTCAGAA+GGG | 0.593711 | 6_3:+16206881 | Msa0942020:CDS |
| TAGCGTTCAAAGTACGCGAC+TGG | 0.594885 | 6_3:-16207909 | None:intergenic |
| GGTTCAACACGTGGAAAGAG+TGG | 0.597276 | 6_3:+16209735 | Msa0942020:CDS |
| CCAATAAATGTGTTGCCAAG+AGG | 0.600706 | 6_3:+16207047 | Msa0942020:CDS |
| TCGCCTTGCACAGAAGCAGA+AGG | 0.613936 | 6_3:+16209714 | Msa0942020:intron |
| CTTTGAACGCTATAGATGAG+AGG | 0.616917 | 6_3:+16207920 | Msa0942020:CDS |
| GGCTCGCTTAGATTGCACTC+TGG | 0.621627 | 6_3:-16206848 | None:intergenic |
| GATGATCTAACTGAAGAACT+AGG | 0.628548 | 6_3:+16207718 | Msa0942020:CDS |
| GCGAAGAAAGCTAATATGCG+TGG | 0.650560 | 6_3:+16205410 | Msa0942020:CDS |
| TTGATTGATCTTCCAATATG+GGG | 0.663468 | 6_3:+16209980 | Msa0942020:CDS |
| GTACTTAAGCAAGTTCAAGT+GGG | 0.663871 | 6_3:+16207696 | Msa0942020:CDS |
| GAAGCAGAAGGTTCAACACG+TGG | 0.694670 | 6_3:+16209726 | Msa0942020:intron |
| GTAACAGAACATGGAAAACG+AGG | 0.694921 | 6_3:-16210122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACTATATTAATATAG+TGG | + | chr6_3:16206648-16206667 | Msa0942020:intron | 10.0% |
| !!! | ATTTTAAACATCAAATAAAT+AGG | + | chr6_3:16207284-16207303 | Msa0942020:intron | 10.0% |
| !!! | TTTCATTTAGTTATAAATTT+TGG | - | chr6_3:16207976-16207995 | None:intergenic | 10.0% |
| !! | ATGTATTAAATTAAGAATAT+TGG | + | chr6_3:16209113-16209132 | Msa0942020:intron | 10.0% |
| !! | TGTATTAAATTAAGAATATT+GGG | + | chr6_3:16209114-16209133 | Msa0942020:intron | 10.0% |
| !! | ATAATCAAATAACATTATAT+TGG | - | chr6_3:16210219-16210238 | None:intergenic | 10.0% |
| !! | TTATAGCAAAAGATAAAATA+AGG | + | chr6_3:16205673-16205692 | Msa0942020:intron | 15.0% |
| !! | AAAATAAGGTTAAATAGTTT+AGG | + | chr6_3:16205687-16205706 | Msa0942020:intron | 15.0% |
| !!! | TGTATTTTTGTTTAACAAAT+TGG | + | chr6_3:16205924-16205943 | Msa0942020:intron | 15.0% |
| !!! | AATATAGTTTTATTTTCCAT+TGG | - | chr6_3:16206641-16206660 | None:intergenic | 15.0% |
| !! | GAAATGATCTTATTAAATAT+TGG | + | chr6_3:16206678-16206697 | Msa0942020:intron | 15.0% |
| !!! | TTAAATGTTTAATTTGATCT+TGG | + | chr6_3:16206920-16206939 | Msa0942020:intron | 15.0% |
| !! | TATATTATGTGGAAAAAAAA+TGG | + | chr6_3:16207363-16207382 | Msa0942020:intron | 15.0% |
| !!! | AATAAAAATAATTCTAGAGT+TGG | - | chr6_3:16207498-16207517 | None:intergenic | 15.0% |
| !!! | ATTTGTTGATAAATAAAATC+AGG | - | chr6_3:16207764-16207783 | None:intergenic | 15.0% |
| !!! | GATTTTATTTATCAACAAAT+AGG | + | chr6_3:16207764-16207783 | Msa0942020:intron | 15.0% |
| !! | TCAAATGATAAAATAAAGAT+AGG | - | chr6_3:16208133-16208152 | None:intergenic | 15.0% |
| !!! | TTATTTTATCATTTGAATGA+AGG | + | chr6_3:16208137-16208156 | Msa0942020:intron | 15.0% |
| !!! | CTTTTCTGTAAAAAAAAAAA+AGG | + | chr6_3:16208163-16208182 | Msa0942020:intron | 15.0% |
| !! | TGACATATTTACAAAATTAA+AGG | - | chr6_3:16209878-16209897 | None:intergenic | 15.0% |
| !! | ATTGGAGAAAAATGAAAATA+AGG | + | chr6_3:16205733-16205752 | Msa0942020:intron | 20.0% |
| !! | CAAAAAATCTATTCAACAAA+TGG | - | chr6_3:16206161-16206180 | None:intergenic | 20.0% |
| !!! | CTAATTTTATAAACTTCCTA+TGG | - | chr6_3:16206461-16206480 | None:intergenic | 20.0% |
| !!! | TTTGACTTTTAATTCTTACA+TGG | + | chr6_3:16207169-16207188 | Msa0942020:intron | 20.0% |
| !!! | TTTTAATTCTTACATGGAAA+TGG | + | chr6_3:16207175-16207194 | Msa0942020:intron | 20.0% |
| !!! | ATTAGTAATTGATAATGTGT+TGG | + | chr6_3:16207259-16207278 | Msa0942020:intron | 20.0% |
| !!! | AATTCTATTTTGTTTACCTA+GGG | + | chr6_3:16207629-16207648 | Msa0942020:intron | 20.0% |
| !! | TTAAGTACTTAATATTCCAA+AGG | - | chr6_3:16207684-16207703 | None:intergenic | 20.0% |
| !!! | CACAATGTTATTTTCTTAAT+GGG | - | chr6_3:16208035-16208054 | None:intergenic | 20.0% |
| !!! | TCACAATGTTATTTTCTTAA+TGG | - | chr6_3:16208036-16208055 | None:intergenic | 20.0% |
| !! | AAGAAAATAACATTGTGATT+AGG | + | chr6_3:16208038-16208057 | Msa0942020:intron | 20.0% |
| !!! | AAGTTTTTGAAAGTTTGTTT+AGG | + | chr6_3:16208371-16208390 | Msa0942020:intron | 20.0% |
| !! | TTCATTCTGTAAAAATGATA+AGG | + | chr6_3:16208745-16208764 | Msa0942020:intron | 20.0% |
| !!! | ATTGTTTTCAAATATGGTTT+CGG | + | chr6_3:16208772-16208791 | Msa0942020:intron | 20.0% |
| !!! | TATCAACAATTTTCATTGTT+AGG | - | chr6_3:16209059-16209078 | None:intergenic | 20.0% |
| !! | TAAATTAAGAATATTGGGTT+TGG | + | chr6_3:16209119-16209138 | Msa0942020:intron | 20.0% |
| !! | TCAAATGAATAAATACATCA+AGG | - | chr6_3:16210014-16210033 | None:intergenic | 20.0% |
| !! | GTATTTATTCATTTGAATTC+AGG | + | chr6_3:16210018-16210037 | Msa0942020:exon | 20.0% |
| ! | GAATGATGAAAATTCGAATT+CGG | + | chr6_3:16205310-16205329 | Msa0942020:CDS | 25.0% |
| ! | TATAAGTTGTTAAGCTACAT+TGG | + | chr6_3:16205715-16205734 | Msa0942020:intron | 25.0% |
| ! | AAATAGTCTCAGAAAACTTA+TGG | + | chr6_3:16205805-16205824 | Msa0942020:intron | 25.0% |
| !! | TGAACATAATAGAGTTTGTT+TGG | - | chr6_3:16205857-16205876 | None:intergenic | 25.0% |
| ! | TGATATATGAAGCACATATA+TGG | + | chr6_3:16205963-16205982 | Msa0942020:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+TGG | + | chr6_3:16206037-16206056 | Msa0942020:intron | 25.0% |
| ! | AAGTATCTAATCTCATACTT+CGG | + | chr6_3:16206227-16206246 | Msa0942020:intron | 25.0% |
| ! | AATCACTTAATCTCATAATC+AGG | + | chr6_3:16206344-16206363 | Msa0942020:intron | 25.0% |
| ! | ATCACTTAATCTCATAATCA+GGG | + | chr6_3:16206345-16206364 | Msa0942020:intron | 25.0% |
| !! | TTTCTTTATATTTGAAACCG+CGG | + | chr6_3:16206711-16206730 | Msa0942020:intron | 25.0% |
| ! | TAATATATCACTCTATTGTC+TGG | - | chr6_3:16206765-16206784 | None:intergenic | 25.0% |
| ! | TAGAGTGATATATTACTACT+TGG | + | chr6_3:16206770-16206789 | Msa0942020:intron | 25.0% |
| !!! | TTCTGAATAAGATTGGTTTT+GGG | - | chr6_3:16206881-16206900 | None:intergenic | 25.0% |
| ! | AAAACCAATCTTATTCAGAA+GGG | + | chr6_3:16206881-16206900 | Msa0942020:CDS | 25.0% |
| !!! | GTTTAATTTGATCTTGGAAT+TGG | + | chr6_3:16206926-16206945 | Msa0942020:intron | 25.0% |
| ! | GATCAGTATCTAATTTAAGT+TGG | + | chr6_3:16206953-16206972 | Msa0942020:intron | 25.0% |
| ! | TTGTTCACCATTTATGTTAT+TGG | - | chr6_3:16207077-16207096 | None:intergenic | 25.0% |
| ! | AACATAAATGGTGAACAAAT+AGG | + | chr6_3:16207079-16207098 | Msa0942020:CDS | 25.0% |
| ! | TTGTAAATTAGCTGAAGATA+AGG | + | chr6_3:16207224-16207243 | Msa0942020:intron | 25.0% |
| ! | TTTCTTATTGTAAATGACTC+TGG | + | chr6_3:16207321-16207340 | Msa0942020:intron | 25.0% |
| !! | GATTACTTTGCTATATTATG+TGG | + | chr6_3:16207352-16207371 | Msa0942020:intron | 25.0% |
| !! | CTTTTCTGTTTGCAATAATT+TGG | + | chr6_3:16207591-16207610 | Msa0942020:intron | 25.0% |
| !!! | GAATTCTATTTTGTTTACCT+AGG | + | chr6_3:16207628-16207647 | Msa0942020:intron | 25.0% |
| !!! | ATTCTATTTTGTTTACCTAG+GGG | + | chr6_3:16207630-16207649 | Msa0942020:intron | 25.0% |
| ! | TGATAAATAAAATCAGGAAC+TGG | - | chr6_3:16207758-16207777 | None:intergenic | 25.0% |
| ! | ACGGAATATTCTGTTATAAA+AGG | + | chr6_3:16208318-16208337 | Msa0942020:intron | 25.0% |
| ! | CGGAATATTCTGTTATAAAA+GGG | + | chr6_3:16208319-16208338 | Msa0942020:intron | 25.0% |
| ! | AATATTCTGTTATAAAAGGG+AGG | + | chr6_3:16208322-16208341 | Msa0942020:intron | 25.0% |
| ! | ATATTCTGTTATAAAAGGGA+GGG | + | chr6_3:16208323-16208342 | Msa0942020:intron | 25.0% |
| !! | TAGATTTGTCCTTTAAGAAT+CGG | - | chr6_3:16208574-16208593 | None:intergenic | 25.0% |
| !!! | TCATTTTTACAGAATGAATC+TGG | - | chr6_3:16208743-16208762 | None:intergenic | 25.0% |
| !! | GGCAAAATTGTTTTCAAATA+TGG | + | chr6_3:16208766-16208785 | Msa0942020:intron | 25.0% |
| ! | TAATGAGTTCTATCCAAATA+TGG | + | chr6_3:16208817-16208836 | Msa0942020:intron | 25.0% |
| ! | TACATTGAAGTTCTCAAAAT+TGG | - | chr6_3:16209098-16209117 | None:intergenic | 25.0% |
| !!! | TATGAGTTTTATTCCCTTTT+TGG | + | chr6_3:16209225-16209244 | Msa0942020:intron | 25.0% |
| !!! | ATGAGTTTTATTCCCTTTTT+GGG | + | chr6_3:16209226-16209245 | Msa0942020:intron | 25.0% |
| !!! | TTTCTGATTCCTCTTTATTT+TGG | + | chr6_3:16209346-16209365 | Msa0942020:intron | 25.0% |
| !!! | TTCTGATTCCTCTTTATTTT+GGG | + | chr6_3:16209347-16209366 | Msa0942020:intron | 25.0% |
| ! | AAGATATTAAGAACTTAGAG+TGG | - | chr6_3:16209375-16209394 | None:intergenic | 25.0% |
| ! | AATGAGTAGTATGTATATTG+AGG | + | chr6_3:16209680-16209699 | Msa0942020:intron | 25.0% |
| !! | TATTGATTGATCTTCCAATA+TGG | + | chr6_3:16209978-16209997 | Msa0942020:CDS | 25.0% |
| ! | ATTGATTGATCTTCCAATAT+GGG | + | chr6_3:16209979-16209998 | Msa0942020:CDS | 25.0% |
| !!! | TTGAATTCAGGTTTTAAAAC+TGG | + | chr6_3:16210030-16210049 | Msa0942020:exon | 25.0% |
| ! | AAGTAATCTGTATACAAAAC+AGG | + | chr6_3:16210059-16210078 | Msa0942020:three_prime_UTR | 25.0% |
| !! | TAACATTTTGTAACAGAACA+TGG | - | chr6_3:16210134-16210153 | None:intergenic | 25.0% |
| ! | ATTCTAGACAACAATAGATT+TGG | - | chr6_3:16210180-16210199 | None:intergenic | 25.0% |
| AATAAGGTGAAAACAGCTTA+TGG | + | chr6_3:16205749-16205768 | Msa0942020:intron | 30.0% | |
| ATAAGGTGAAAACAGCTTAT+GGG | + | chr6_3:16205750-16205769 | Msa0942020:intron | 30.0% | |
| ! | TGTTTAACAAATTGGCTCAT+AGG | + | chr6_3:16205932-16205951 | Msa0942020:intron | 30.0% |
| ! | GTGATTTTCTCAAATTGTGT+TGG | - | chr6_3:16206013-16206032 | None:intergenic | 30.0% |
| ! | GTAATTATATGTGTTGGTGT+CGG | + | chr6_3:16206043-16206062 | Msa0942020:intron | 30.0% |
| TTATCATATCCTATGAAGCA+CGG | - | chr6_3:16206132-16206151 | None:intergenic | 30.0% | |
| ATACAACATAGTACTCACTT+GGG | + | chr6_3:16206188-16206207 | Msa0942020:intron | 30.0% | |
| AGTATCTAATCTCATACTTC+GGG | + | chr6_3:16206228-16206247 | Msa0942020:intron | 30.0% | |
| AAACGTCAGATAGTTTCAAA+CGG | - | chr6_3:16206298-16206317 | None:intergenic | 30.0% | |
| ATAGCTAATATAAGCAGCTT+AGG | + | chr6_3:16206429-16206448 | Msa0942020:intron | 30.0% | |
| GTAAGTTTATTATCCAAGCT+TGG | + | chr6_3:16206496-16206515 | Msa0942020:intron | 30.0% | |
| TTTCTTGATAAAACCAAGCT+TGG | - | chr6_3:16206512-16206531 | None:intergenic | 30.0% | |
| ATCAGATAAAGAAGATTAGC+AGG | - | chr6_3:16206546-16206565 | None:intergenic | 30.0% | |
| !! | AAAAGTACTCATTTATTCCG+CGG | - | chr6_3:16206731-16206750 | None:intergenic | 30.0% |
| !! | TACTTGGTTAGTTCTAAAGT+TGG | + | chr6_3:16206786-16206805 | Msa0942020:intron | 30.0% |
| !!! | CTTCTGAATAAGATTGGTTT+TGG | - | chr6_3:16206882-16206901 | None:intergenic | 30.0% |
| CAAAACCAATCTTATTCAGA+AGG | + | chr6_3:16206880-16206899 | Msa0942020:CDS | 30.0% | |
| ATTTGATCTTGGAATTGGAT+TGG | + | chr6_3:16206931-16206950 | Msa0942020:intron | 30.0% | |
| TATTGTAAATGACTCTGGTA+TGG | + | chr6_3:16207326-16207345 | Msa0942020:intron | 30.0% | |
| !! | TTCTATTTTGTTTACCTAGG+GGG | + | chr6_3:16207631-16207650 | Msa0942020:intron | 30.0% |
| TAATATTCCAAAGGTCATAG+TGG | - | chr6_3:16207675-16207694 | None:intergenic | 30.0% | |
| ATAGAAATCTCTCTCTTTCT+TGG | - | chr6_3:16207875-16207894 | None:intergenic | 30.0% | |
| TATAGATGAGAGGTTAAAGA+AGG | + | chr6_3:16207930-16207949 | Msa0942020:CDS | 30.0% | |
| GCTGAAATTGAATTAAGTCA+TGG | - | chr6_3:16208007-16208026 | None:intergenic | 30.0% | |
| TAGAAGATAGTAGAAGTAGA+AGG | + | chr6_3:16208257-16208276 | Msa0942020:intron | 30.0% | |
| ! | TAGCACTTTCCTTGATTTTA+CGG | + | chr6_3:16208299-16208318 | Msa0942020:intron | 30.0% |
| CAGAATATTCCGTAAAATCA+AGG | - | chr6_3:16208311-16208330 | None:intergenic | 30.0% | |
| ! | CAGTTCGTTTCTTGATTTTT+CGG | + | chr6_3:16208529-16208548 | Msa0942020:intron | 30.0% |
| ! | AGTTCGTTTCTTGATTTTTC+GGG | + | chr6_3:16208530-16208549 | Msa0942020:intron | 30.0% |
| !!! | GTTTCCTTTTGGTTTTCATA+TGG | + | chr6_3:16208639-16208658 | Msa0942020:intron | 30.0% |
| GCAGTAAAAACACTATCATA+TGG | - | chr6_3:16208691-16208710 | None:intergenic | 30.0% | |
| CAAATATGGTTTCGGATATT+AGG | + | chr6_3:16208780-16208799 | Msa0942020:intron | 30.0% | |
| GGATATTAGGAAAGATTTAG+AGG | + | chr6_3:16208793-16208812 | Msa0942020:intron | 30.0% | |
| GTTCTATCCAAATATGGTTT+CGG | + | chr6_3:16208823-16208842 | Msa0942020:intron | 30.0% | |
| ! | TACAGAGAGAACATTTTCAT+TGG | - | chr6_3:16208938-16208957 | None:intergenic | 30.0% |
| TGAAAATGTTCTCTCTGTAA+TGG | + | chr6_3:16208939-16208958 | Msa0942020:intron | 30.0% | |
| ! | TTGCTGCAAATTTAAGATGT+TGG | + | chr6_3:16209145-16209164 | Msa0942020:intron | 30.0% |
| ! | ATGAGTTTTTGACCCAAAAA+GGG | - | chr6_3:16209241-16209260 | None:intergenic | 30.0% |
| ! | AATGAGTTTTTGACCCAAAA+AGG | - | chr6_3:16209242-16209261 | None:intergenic | 30.0% |
| TAGAATCAAACATCATCAAG+CGG | - | chr6_3:16209269-16209288 | None:intergenic | 30.0% | |
| ! | CAGAATGCACAAATTTTCTA+TGG | - | chr6_3:16209324-16209343 | None:intergenic | 30.0% |
| !!! | TCTGATTCCTCTTTATTTTG+GGG | + | chr6_3:16209348-16209367 | Msa0942020:intron | 30.0% |
| TAAATTGTCGCAAATTCTAG+TGG | - | chr6_3:16209540-16209559 | None:intergenic | 30.0% | |
| TTGATTGATCTTCCAATATG+GGG | + | chr6_3:16209980-16209999 | Msa0942020:CDS | 30.0% | |
| AAACAGGCAATAATGTCAAA+TGG | + | chr6_3:16210075-16210094 | Msa0942020:three_prime_UTR | 30.0% | |
| !! | ATTTCGTTGTTTTCTTCCTC+CGG | - | chr6_3:16205269-16205288 | None:intergenic | 35.0% |
| TGAAAATTCGAATTCGGAAC+CGG | + | chr6_3:16205316-16205335 | Msa0942020:CDS | 35.0% | |
| GATGAAGAAGAAACTGAAGA+TGG | + | chr6_3:16205385-16205404 | Msa0942020:CDS | 35.0% | |
| TTAACATGATCCATATGAGG+AGG | - | chr6_3:16205458-16205477 | None:intergenic | 35.0% | |
| AGCTTAACATGATCCATATG+AGG | - | chr6_3:16205461-16205480 | None:intergenic | 35.0% | |
| ! | AACAAATTGGCTCATAGGAT+AGG | + | chr6_3:16205937-16205956 | Msa0942020:intron | 35.0% |
| ACATATATGGACACTGATAC+CGG | + | chr6_3:16205976-16205995 | Msa0942020:intron | 35.0% | |
| TATCATATCCTATGAAGCAC+GGG | - | chr6_3:16206131-16206150 | None:intergenic | 35.0% | |
| CATACAACATAGTACTCACT+TGG | + | chr6_3:16206187-16206206 | Msa0942020:intron | 35.0% | |
| TACAACATAGTACTCACTTG+GGG | + | chr6_3:16206189-16206208 | Msa0942020:intron | 35.0% | |
| GTATCTAATCTCATACTTCG+GGG | + | chr6_3:16206229-16206248 | Msa0942020:intron | 35.0% | |
| TAGTTTCAAACGGACACTTA+TGG | - | chr6_3:16206288-16206307 | None:intergenic | 35.0% | |
| !! | TGGTTAGTTCTAAAGTTGGT+TGG | + | chr6_3:16206790-16206809 | Msa0942020:intron | 35.0% |
| ATCACCCTTCTGAATAAGAT+TGG | - | chr6_3:16206888-16206907 | None:intergenic | 35.0% | |
| TTGCTTTGTGATTGTGTAGA+TGG | + | chr6_3:16207014-16207033 | Msa0942020:intron | 35.0% | |
| TGCTTTGTGATTGTGTAGAT+GGG | + | chr6_3:16207015-16207034 | Msa0942020:intron | 35.0% | |
| CAATAAATGTGTTGCCAAGA+GGG | + | chr6_3:16207048-16207067 | Msa0942020:CDS | 35.0% | |
| AGGGTTGCCAATAACATAAA+TGG | + | chr6_3:16207067-16207086 | Msa0942020:CDS | 35.0% | |
| ! | GGAAAAAAAATGGTGTTAGC+AGG | + | chr6_3:16207373-16207392 | Msa0942020:intron | 35.0% |
| !!! | GGGGATATACATGTTTTTTC+CGG | + | chr6_3:16207410-16207429 | Msa0942020:intron | 35.0% |
| AGTACTTAAGCAAGTTCAAG+TGG | + | chr6_3:16207695-16207714 | Msa0942020:CDS | 35.0% | |
| GTACTTAAGCAAGTTCAAGT+GGG | + | chr6_3:16207696-16207715 | Msa0942020:CDS | 35.0% | |
| GATGATCTAACTGAAGAACT+AGG | + | chr6_3:16207718-16207737 | Msa0942020:CDS | 35.0% | |
| ! | TGAAAGTTTGTTTAGGCCTT+AGG | + | chr6_3:16208378-16208397 | Msa0942020:intron | 35.0% |
| ! | GAAAGTTTGTTTAGGCCTTA+GGG | + | chr6_3:16208379-16208398 | Msa0942020:intron | 35.0% |
| ! | AAAGTTTGTTTAGGCCTTAG+GGG | + | chr6_3:16208380-16208399 | Msa0942020:intron | 35.0% |
| !! | TGTAGTAACTTAGCTCTGAT+AGG | + | chr6_3:16208418-16208437 | Msa0942020:intron | 35.0% |
| ! | AGCTTTACAATGGTGGAAAT+AGG | - | chr6_3:16208476-16208495 | None:intergenic | 35.0% |
| AAACCTTCTCCGATTCTTAA+AGG | + | chr6_3:16208562-16208581 | Msa0942020:intron | 35.0% | |
| !!! | GTCTTGATGTTGTTTCCTTT+TGG | + | chr6_3:16208628-16208647 | Msa0942020:intron | 35.0% |
| ACAGCCATATGAAAACCAAA+AGG | - | chr6_3:16208646-16208665 | None:intergenic | 35.0% | |
| GTTCTATCCGAAACCATATT+TGG | - | chr6_3:16208833-16208852 | None:intergenic | 35.0% | |
| TGGTTTCGGATAGAACATTA+TGG | + | chr6_3:16208837-16208856 | Msa0942020:intron | 35.0% | |
| AAATGTTCTCTCTGTAATGG+TGG | + | chr6_3:16208942-16208961 | Msa0942020:intron | 35.0% | |
| !! | ATGTTGGTTTGTGATTTGCT+AGG | + | chr6_3:16209161-16209180 | Msa0942020:intron | 35.0% |
| !! | TGTTGGTTTGTGATTTGCTA+GGG | + | chr6_3:16209162-16209181 | Msa0942020:intron | 35.0% |
| !! | TTTGTGATTTGCTAGGGATA+GGG | + | chr6_3:16209168-16209187 | Msa0942020:intron | 35.0% |
| AGAATCAAACATCATCAAGC+GGG | - | chr6_3:16209268-16209287 | None:intergenic | 35.0% | |
| TCCTTAAAGCCAGAATAGAT+TGG | + | chr6_3:16209430-16209449 | Msa0942020:intron | 35.0% | |
| TAGAAGATCATCTGACAGTT+CGG | - | chr6_3:16209818-16209837 | None:intergenic | 35.0% | |
| GTCAACATGTGTGAAATCAT+TGG | + | chr6_3:16209894-16209913 | Msa0942020:intron | 35.0% | |
| CGTCAACTTCTTTCGCAATT+CGG | + | chr6_3:16205482-16205501 | Msa0942020:intron | 40.0% | |
| ! | CGCAATTCGGTGATATTCAA+AGG | + | chr6_3:16205495-16205514 | Msa0942020:intron | 40.0% |
| AGAGAAAACGAGATACCTTG+AGG | - | chr6_3:16205533-16205552 | None:intergenic | 40.0% | |
| AGCTATCTCAAGCAATCTCA+TGG | - | chr6_3:16206415-16206434 | None:intergenic | 40.0% | |
| CGTAAAATAAGTTCACACGC+AGG | - | chr6_3:16206604-16206623 | None:intergenic | 40.0% | |
| CGAAACTCTTAAAGAGCCAA+TGG | + | chr6_3:16206622-16206641 | Msa0942020:intron | 40.0% | |
| CCTCTTGGCAACACATTTAT+TGG | - | chr6_3:16207050-16207069 | None:intergenic | 40.0% | |
| CCAATAAATGTGTTGCCAAG+AGG | + | chr6_3:16207047-16207066 | Msa0942020:CDS | 40.0% | |
| TATGTTATTGGCAACCCTCT+TGG | - | chr6_3:16207065-16207084 | None:intergenic | 40.0% | |
| GTAAATGACTCTGGTATGGA+CGG | + | chr6_3:16207330-16207349 | Msa0942020:intron | 40.0% | |
| TAGCAGGATTATGCACTTCT+AGG | + | chr6_3:16207389-16207408 | Msa0942020:intron | 40.0% | |
| AGCAGGATTATGCACTTCTA+GGG | + | chr6_3:16207390-16207409 | Msa0942020:intron | 40.0% | |
| ! | TAACAGTGTTTTCTTGTCGC+TGG | + | chr6_3:16207559-16207578 | Msa0942020:intron | 40.0% |
| CATCTTTCCACTATGACCTT+TGG | + | chr6_3:16207665-16207684 | Msa0942020:CDS | 40.0% | |
| CTTTGAACGCTATAGATGAG+AGG | + | chr6_3:16207920-16207939 | Msa0942020:CDS | 40.0% | |
| AATTGGGCCAACTAGCATAT+TGG | - | chr6_3:16208207-16208226 | None:intergenic | 40.0% | |
| ATGCTAGTTGGCCCAATTAT+TGG | + | chr6_3:16208209-16208228 | Msa0942020:intron | 40.0% | |
| TGCTAGTTGGCCCAATTATT+GGG | + | chr6_3:16208210-16208229 | Msa0942020:intron | 40.0% | |
| GTAAAGTGGGCCCAATAATT+GGG | - | chr6_3:16208223-16208242 | None:intergenic | 40.0% | |
| TGTAAAGTGGGCCCAATAAT+TGG | - | chr6_3:16208224-16208243 | None:intergenic | 40.0% | |
| !! | AAAGAGCGCTCATGTAAAGT+GGG | - | chr6_3:16208236-16208255 | None:intergenic | 40.0% |
| TCTGTTATAAAAGGGAGGGA+AGG | + | chr6_3:16208327-16208346 | Msa0942020:intron | 40.0% | |
| CTGTTATAAAAGGGAGGGAA+GGG | + | chr6_3:16208328-16208347 | Msa0942020:intron | 40.0% | |
| TGAGCTCAAGAGCTTTACAA+TGG | - | chr6_3:16208486-16208505 | None:intergenic | 40.0% | |
| ! | TGTCCTTTAAGAATCGGAGA+AGG | - | chr6_3:16208568-16208587 | None:intergenic | 40.0% |
| GACAAATCTAGCAAAGACTC+TGG | + | chr6_3:16208584-16208603 | Msa0942020:intron | 40.0% | |
| AACATCAAGACTCGACAATG+AGG | - | chr6_3:16208619-16208638 | None:intergenic | 40.0% | |
| ! | TGGTTTTCATATGGCTGTCA+TGG | + | chr6_3:16208648-16208667 | Msa0942020:intron | 40.0% |
| TTTCATATGGCTGTCATGGT+TGG | + | chr6_3:16208652-16208671 | Msa0942020:intron | 40.0% | |
| TTCTCTCTGTAATGGTGGTA+AGG | + | chr6_3:16208947-16208966 | Msa0942020:intron | 40.0% | |
| GGAAGAAAGTCTTCAACAGT+TGG | - | chr6_3:16209011-16209030 | None:intergenic | 40.0% | |
| CTTCCTATATATTCCTGCTC+AGG | + | chr6_3:16209026-16209045 | Msa0942020:intron | 40.0% | |
| AGTCCTGAGCAGGAATATAT+AGG | - | chr6_3:16209032-16209051 | None:intergenic | 40.0% | |
| !! | GTTTGTGATTTGCTAGGGAT+AGG | + | chr6_3:16209167-16209186 | Msa0942020:intron | 40.0% |
| !! | GCCAATCTATTCTGGCTTTA+AGG | - | chr6_3:16209434-16209453 | None:intergenic | 40.0% |
| GTTAAGATTGTGTCGTGGAA+TGG | + | chr6_3:16209464-16209483 | Msa0942020:intron | 40.0% | |
| !! | CGCAAATTCTAGTGGATTGA+GGG | - | chr6_3:16209532-16209551 | None:intergenic | 40.0% |
| !! | TCGCAAATTCTAGTGGATTG+AGG | - | chr6_3:16209533-16209552 | None:intergenic | 40.0% |
| !! | CAGCTATAGGCTTTGTTTGA+GGG | - | chr6_3:16209771-16209790 | None:intergenic | 40.0% |
| TTAGCATTAGCAGCAGCTAT+AGG | - | chr6_3:16209784-16209803 | None:intergenic | 40.0% | |
| GTAACAGAACATGGAAAACG+AGG | - | chr6_3:16210125-16210144 | None:intergenic | 40.0% | |
| TTCGAATTCGGAACCGGAAT+CGG | + | chr6_3:16205322-16205341 | Msa0942020:CDS | 45.0% | |
| ATCGGAATCGGAAACGGAAA+TGG | + | chr6_3:16205340-16205359 | Msa0942020:CDS | 45.0% | |
| GCGAAGAAAGCTAATATGCG+TGG | + | chr6_3:16205410-16205429 | Msa0942020:CDS | 45.0% | |
| GAGTCGAATTCCTCCTCATA+TGG | + | chr6_3:16205445-16205464 | Msa0942020:intron | 45.0% | |
| AGGATTTATCTCGCTCCTCA+AGG | + | chr6_3:16205515-16205534 | Msa0942020:intron | 45.0% | |
| ! | ACGTCTTCGATCAGAAGTGT+CGG | - | chr6_3:16205562-16205581 | None:intergenic | 45.0% |
| GTGTAAGTGTGTGTCAGTGT+TGG | - | chr6_3:16205591-16205610 | None:intergenic | 45.0% | |
| ACATAGTACTCACTTGGGGT+TGG | + | chr6_3:16206193-16206212 | Msa0942020:intron | 45.0% | |
| CATAGTACTCACTTGGGGTT+GGG | + | chr6_3:16206194-16206213 | Msa0942020:intron | 45.0% | |
| GCAGCTTAGGATATGTCCAT+AGG | + | chr6_3:16206442-16206461 | Msa0942020:intron | 45.0% | |
| TGCACTCTGGCATTAGAATC+TGG | - | chr6_3:16206838-16206857 | None:intergenic | 45.0% | |
| !!! | AAGATTGGTTTTGGGATGCC+CGG | - | chr6_3:16206873-16206892 | None:intergenic | 45.0% |
| GCAGGATTATGCACTTCTAG+GGG | + | chr6_3:16207391-16207410 | Msa0942020:intron | 45.0% | |
| TTTACCTAGGGGGAAGAAAG+AGG | + | chr6_3:16207641-16207660 | Msa0942020:intron | 45.0% | |
| ! | CAGCCTTTAAGAGAGCTACT+CGG | + | chr6_3:16207818-16207837 | Msa0942020:intron | 45.0% |
| ! | AGCCTTTAAGAGAGCTACTC+GGG | + | chr6_3:16207819-16207838 | Msa0942020:intron | 45.0% |
| AAAAGGCTGATAGAACGCCA+AGG | + | chr6_3:16208180-16208199 | Msa0942020:intron | 45.0% | |
| CCAACTAGCATATTGGACCT+TGG | - | chr6_3:16208200-16208219 | None:intergenic | 45.0% | |
| CCAAGGTCCAATATGCTAGT+TGG | + | chr6_3:16208197-16208216 | Msa0942020:intron | 45.0% | |
| !! | GAAAGAGCGCTCATGTAAAG+TGG | - | chr6_3:16208237-16208256 | None:intergenic | 45.0% |
| CAGAGAGAACTTATCCCCTA+AGG | - | chr6_3:16208397-16208416 | None:intergenic | 45.0% | |
| CTTAGGGGATAAGTTCTCTC+TGG | + | chr6_3:16208395-16208414 | Msa0942020:intron | 45.0% | |
| GCTCAAGAGCTTTACAATGG+TGG | - | chr6_3:16208483-16208502 | None:intergenic | 45.0% | |
| TCTAGCAAAGACTCTGGCAA+TGG | + | chr6_3:16208590-16208609 | Msa0942020:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr6_3:16208886-16208905 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr6_3:16208887-16208906 | None:intergenic | 45.0% |
| TTGCTAGGGATAGGGTTTAG+AGG | + | chr6_3:16209176-16209195 | Msa0942020:intron | 45.0% | |
| GGTTTAGAGGAGTTCAGAAC+TGG | + | chr6_3:16209189-16209208 | Msa0942020:intron | 45.0% | |
| GAGTGGACCCCAAAATAAAG+AGG | - | chr6_3:16209358-16209377 | None:intergenic | 45.0% | |
| CAGAGCTTGCCAATCTATTC+TGG | - | chr6_3:16209442-16209461 | None:intergenic | 45.0% | |
| GAATAGATTGGCAAGCTCTG+TGG | + | chr6_3:16209442-16209461 | Msa0942020:intron | 45.0% | |
| CTGTGGTTAAGATTGTGTCG+TGG | + | chr6_3:16209459-16209478 | Msa0942020:intron | 45.0% | |
| TAGCTGACGCTTTATCGCAT+TGG | + | chr6_3:16209567-16209586 | Msa0942020:intron | 45.0% | |
| AACACGTGGAAAGAGTGGTT+CGG | + | chr6_3:16209740-16209759 | Msa0942020:CDS | 45.0% | |
| !! | GCAGCTATAGGCTTTGTTTG+AGG | - | chr6_3:16209772-16209791 | None:intergenic | 45.0% |
| ATACCTGCAAGGGTCATAGT+GGG | - | chr6_3:16209938-16209957 | None:intergenic | 45.0% | |
| AATACCTGCAAGGGTCATAG+TGG | - | chr6_3:16209939-16209958 | None:intergenic | 45.0% | |
| CTATGACCCTTGCAGGTATT+TGG | + | chr6_3:16209939-16209958 | Msa0942020:intron | 45.0% | |
| AAGGTAGCATCACCCCATAT+TGG | - | chr6_3:16209995-16210014 | None:intergenic | 45.0% | |
| !!! | TTATTTTTATTCTTTATATT+TGG | + | chr6_3:16207507-16207526 | Msa0942020:intron | 5.0% |
| TTCGGAACCGGAATCGGAAT+CGG | + | chr6_3:16205328-16205347 | Msa0942020:CDS | 50.0% | |
| ACCGGAATCGGAATCGGAAA+CGG | + | chr6_3:16205334-16205353 | Msa0942020:CDS | 50.0% | |
| TCCGTTTCCGATTCCGATTC+CGG | - | chr6_3:16205338-16205357 | None:intergenic | 50.0% | |
| ! | TCCTTGGATTAGGCATGTCC+CGG | - | chr6_3:16206105-16206124 | None:intergenic | 50.0% |
| CTATCTGACGTTTCACGCTC+AGG | + | chr6_3:16206305-16206324 | Msa0942020:intron | 50.0% | |
| TGACGTTTCACGCTCAGGTT+TGG | + | chr6_3:16206310-16206329 | Msa0942020:intron | 50.0% | |
| !!! | AGATTGGTTTTGGGATGCCC+GGG | - | chr6_3:16206872-16206891 | None:intergenic | 50.0% |
| GAAACAGCAGCACACATTGC+CGG | - | chr6_3:16207432-16207451 | None:intergenic | 50.0% | |
| ATGACCTCTTTCTTCCCCCT+AGG | - | chr6_3:16207648-16207667 | None:intergenic | 50.0% | |
| CTCCCGAGTAGCTCTCTTAA+AGG | - | chr6_3:16207824-16207843 | None:intergenic | 50.0% | |
| AGCTACTCGGGAGCAAAAAC+TGG | + | chr6_3:16207831-16207850 | Msa0942020:CDS | 50.0% | |
| ! | AGTACGCGACTGGTCAACTT+TGG | - | chr6_3:16207902-16207921 | None:intergenic | 50.0% |
| TAGCGTTCAAAGTACGCGAC+TGG | - | chr6_3:16207912-16207931 | None:intergenic | 50.0% | |
| GCTGTCATGGTTGGCAATTC+TGG | + | chr6_3:16208661-16208680 | Msa0942020:intron | 50.0% | |
| ACTAAGTGGGGTCGACTACA+TGG | - | chr6_3:16208874-16208893 | None:intergenic | 50.0% | |
| ATGTAGTCGACCCCACTTAG+TGG | + | chr6_3:16208873-16208892 | Msa0942020:intron | 50.0% | |
| TGTAGTCGACCCCACTTAGT+GGG | + | chr6_3:16208874-16208893 | Msa0942020:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr6_3:16208888-16208907 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr6_3:16208885-16208904 | Msa0942020:intron | 50.0% | |
| GTGTCGTGGAATGGAAGAAC+TGG | + | chr6_3:16209473-16209492 | Msa0942020:intron | 50.0% | |
| GAACCTTCTGCTTCTGTGCA+AGG | - | chr6_3:16209720-16209739 | None:intergenic | 50.0% | |
| GAAGCAGAAGGTTCAACACG+TGG | + | chr6_3:16209726-16209745 | Msa0942020:intron | 50.0% | |
| GGTTCAACACGTGGAAAGAG+TGG | + | chr6_3:16209735-16209754 | Msa0942020:CDS | 50.0% | |
| TTTCCCACTATGACCCTTGC+AGG | + | chr6_3:16209932-16209951 | Msa0942020:intron | 50.0% | |
| TGACCCTTGCAGGTATTTGG+CGG | + | chr6_3:16209942-16209961 | Msa0942020:intron | 50.0% | |
| AAGCCGCCAAATACCTGCAA+GGG | - | chr6_3:16209948-16209967 | None:intergenic | 50.0% | |
| ! | TGTGTTGGCGTGTCAGTGTC+CGG | - | chr6_3:16205998-16206017 | None:intergenic | 55.0% |
| TGTCGGACACGTATCGCTGT+CGG | + | chr6_3:16206060-16206079 | Msa0942020:intron | 55.0% | |
| ACACGATACGTGTCCGACAC+CGG | + | chr6_3:16206083-16206102 | Msa0942020:intron | 55.0% | |
| GATTAGGCATGTCCCGGTGT+CGG | - | chr6_3:16206099-16206118 | None:intergenic | 55.0% | |
| ACCGGGACATGCCTAATCCA+AGG | + | chr6_3:16206101-16206120 | Msa0942020:intron | 55.0% | |
| TATGAAGCACGGGCACTCCT+TGG | - | chr6_3:16206121-16206140 | None:intergenic | 55.0% | |
| !! | AAGGAGTGCCCGTGCTTCAT+AGG | + | chr6_3:16206120-16206139 | Msa0942020:intron | 55.0% |
| GGCTCGCTTAGATTGCACTC+TGG | - | chr6_3:16206851-16206870 | None:intergenic | 55.0% | |
| GAGTGCAATCTAAGCGAGCC+CGG | + | chr6_3:16206851-16206870 | Msa0942020:CDS | 55.0% | |
| AGTGCAATCTAAGCGAGCCC+GGG | + | chr6_3:16206852-16206871 | Msa0942020:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr6_3:16208880-16208899 | Msa0942020:intron | 55.0% | |
| GTTAGGTGTGAGTCCTGAGC+AGG | - | chr6_3:16209042-16209061 | None:intergenic | 55.0% | |
| TCGCCTTGCACAGAAGCAGA+AGG | + | chr6_3:16209714-16209733 | Msa0942020:intron | 55.0% | |
| CAAGCCGCCAAATACCTGCA+AGG | - | chr6_3:16209949-16209968 | None:intergenic | 55.0% | |
| CACGATACGTGTCCGACACC+GGG | + | chr6_3:16206084-16206103 | Msa0942020:intron | 60.0% | |
| GCACGGGCACTCCTTGGATT+AGG | - | chr6_3:16206115-16206134 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 16205257 | 16210239 | 16205257 | ID=Msa0942020;Name=Msa0942020 |
| chr6_3 | mRNA | 16205257 | 16210239 | 16205257 | ID=Msa0942020-mRNA-1;Parent=Msa0942020;Name=Msa0942020-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.66|0.71|1|0.83|0.85|7|206|244 |
| chr6_3 | exon | 16205257 | 16205437 | 16205257 | ID=Msa0942020-mRNA-1:exon:4996;Parent=Msa0942020-mRNA-1 |
| chr6_3 | exon | 16206839 | 16206902 | 16206839 | ID=Msa0942020-mRNA-1:exon:4997;Parent=Msa0942020-mRNA-1 |
| chr6_3 | exon | 16207033 | 16207100 | 16207033 | ID=Msa0942020-mRNA-1:exon:4998;Parent=Msa0942020-mRNA-1 |
| chr6_3 | exon | 16207650 | 16207739 | 16207650 | ID=Msa0942020-mRNA-1:exon:4999;Parent=Msa0942020-mRNA-1 |
| chr6_3 | exon | 16207821 | 16207951 | 16207821 | ID=Msa0942020-mRNA-1:exon:5000;Parent=Msa0942020-mRNA-1 |
| chr6_3 | exon | 16209727 | 16209847 | 16209727 | ID=Msa0942020-mRNA-1:exon:5001;Parent=Msa0942020-mRNA-1 |
| chr6_3 | exon | 16209954 | 16210239 | 16209954 | ID=Msa0942020-mRNA-1:exon:5002;Parent=Msa0942020-mRNA-1 |
| chr6_3 | CDS | 16205257 | 16205437 | 16205257 | ID=Msa0942020-mRNA-1:cds;Parent=Msa0942020-mRNA-1 |
| chr6_3 | CDS | 16206839 | 16206902 | 16206839 | ID=Msa0942020-mRNA-1:cds;Parent=Msa0942020-mRNA-1 |
| chr6_3 | CDS | 16207033 | 16207100 | 16207033 | ID=Msa0942020-mRNA-1:cds;Parent=Msa0942020-mRNA-1 |
| chr6_3 | CDS | 16207650 | 16207739 | 16207650 | ID=Msa0942020-mRNA-1:cds;Parent=Msa0942020-mRNA-1 |
| chr6_3 | CDS | 16207821 | 16207951 | 16207821 | ID=Msa0942020-mRNA-1:cds;Parent=Msa0942020-mRNA-1 |
| chr6_3 | CDS | 16209727 | 16209847 | 16209727 | ID=Msa0942020-mRNA-1:cds;Parent=Msa0942020-mRNA-1 |
| chr6_3 | CDS | 16209954 | 16210033 | 16209954 | ID=Msa0942020-mRNA-1:cds;Parent=Msa0942020-mRNA-1 |
| chr6_3 | three_prime_UTR | 16210034 | 16210239 | 16210034 | ID=Msa0942020-mRNA-1:three_prime_utr;Parent=Msa0942020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
