Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979070 | XP_024642439.1 | 96.887 | 257 | 6 | 1 | 1 | 255 | 1 | 257 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979070 | sp|Q59YL9|ESF2_CANAL | 37.603 | 242 | 139 | 5 | 18 | 252 | 84 | 320 | 1.41e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979070 | A0A396HCW7 | 96.887 | 257 | 6 | 1 | 1 | 255 | 1 | 257 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0686950 | Msa0979070 | -0.800081 | 1.703352e-48 | -8.615850e-47 |
| Msa0827520 | Msa0979070 | -0.800214 | 1.601066e-48 | -8.615850e-47 |
| Msa0942020 | Msa0979070 | 0.859534 | 3.870185e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979070 | MtrunA17_Chr6g0458071 | 96.887 | 257 | 6 | 1 | 1 | 255 | 1 | 257 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979070 | AT3G56510.2 | 57.674 | 215 | 78 | 2 | 52 | 254 | 43 | 256 | 4.55e-87 | 259 |
| Msa0979070 | AT3G56510.5 | 57.674 | 215 | 78 | 2 | 52 | 254 | 43 | 256 | 4.55e-87 | 259 |
| Msa0979070 | AT3G56510.3 | 57.674 | 215 | 78 | 2 | 52 | 254 | 43 | 256 | 4.55e-87 | 259 |
| Msa0979070 | AT3G56510.1 | 57.674 | 215 | 78 | 2 | 52 | 254 | 43 | 256 | 4.55e-87 | 259 |
| Msa0979070 | AT3G56510.4 | 57.674 | 215 | 78 | 2 | 52 | 254 | 43 | 256 | 4.55e-87 | 259 |
Find 83 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGGCAACACATTTAT+TGG | 0.115118 | 6_4:-15398554 | None:intergenic |
| GAGAGAAGAGGATTTGAATT+AGG | 0.118268 | 6_4:-15396610 | None:intergenic |
| TTGTTCACCATTTATGTTAT+TGG | 0.148535 | 6_4:-15398581 | None:intergenic |
| GTTGCCGGAGTTTGGGGTTT+AGG | 0.192128 | 6_4:-15396643 | None:intergenic |
| CGGTGGTGTTGCCGGAGTTT+GGG | 0.210374 | 6_4:-15396650 | None:intergenic |
| CTTCTGAATAAGATTGGTTT+TGG | 0.220354 | 6_4:-15398386 | None:intergenic |
| TCCGTTTCCGATTCCGATTC+CGG | 0.231387 | 6_4:-15396839 | None:intergenic |
| ATAGAAATCTCTCTCTTTCT+TGG | 0.237380 | 6_4:-15399381 | None:intergenic |
| TATTGATTGATCTTCCAATA+TGG | 0.239686 | 6_4:+15401481 | Msa0979070:three_prime_UTR |
| GTATTTATTCATTTGAATTC+AGG | 0.246483 | 6_4:+15401521 | Msa0979070:three_prime_UTR |
| AGAGAAGAGGATTTGAATTA+GGG | 0.249470 | 6_4:-15396609 | None:intergenic |
| CTATGACCCTTGCAGGTATT+TGG | 0.250217 | 6_4:+15401442 | Msa0979070:intron |
| ATAATCAAATAACATTATAT+TGG | 0.279653 | 6_4:-15401719 | None:intergenic |
| TTGCCGGAGTTTGGGGTTTA+GGG | 0.284087 | 6_4:-15396642 | None:intergenic |
| CGTCAACTTCTTTCGCAATT+CGG | 0.290450 | 6_4:+15396986 | Msa0979070:CDS |
| CTCCCGAGTAGCTCTCTTAA+AGG | 0.293569 | 6_4:-15399330 | None:intergenic |
| GCGGTGGTGTTGCCGGAGTT+TGG | 0.305667 | 6_4:-15396651 | None:intergenic |
| CATCTTTCCACTATGACCTT+TGG | 0.342853 | 6_4:+15399174 | Msa0979070:CDS |
| ATCGGAATCGGAAACGGAAA+TGG | 0.349230 | 6_4:+15396844 | Msa0979070:CDS |
| ATTCTAGACAACAATAGATT+TGG | 0.359052 | 6_4:-15401680 | None:intergenic |
| TTCGAATTCGGAACCGGAAT+CGG | 0.361574 | 6_4:+15396826 | Msa0979070:CDS |
| GAGTCGAATTCCTCCTCATA+TGG | 0.364489 | 6_4:+15396949 | Msa0979070:CDS |
| AACATAAATGGTGAACAAAT+AGG | 0.374771 | 6_4:+15398586 | Msa0979070:CDS |
| ATCACCCTTCTGAATAAGAT+TGG | 0.375139 | 6_4:-15398392 | None:intergenic |
| TTGTGCGGCGGTGGTGTTGC+CGG | 0.380125 | 6_4:-15396658 | None:intergenic |
| CAGCTATAGGCTTTGTTTGA+GGG | 0.381118 | 6_4:-15401271 | None:intergenic |
| AGGGTTGCCAATAACATAAA+TGG | 0.407509 | 6_4:+15398574 | Msa0979070:CDS |
| GAGTTTGGGGTTTAGGGTTG+AGG | 0.409710 | 6_4:-15396636 | None:intergenic |
| TTAGCATTAGCAGCAGCTAT+AGG | 0.414591 | 6_4:-15401284 | None:intergenic |
| TGAAAATTCGAATTCGGAAC+CGG | 0.417888 | 6_4:+15396820 | Msa0979070:CDS |
| GAATGATGAAAATTCGAATT+CGG | 0.431044 | 6_4:+15396814 | Msa0979070:CDS |
| TTCGGAACCGGAATCGGAAT+CGG | 0.432857 | 6_4:+15396832 | Msa0979070:CDS |
| CGCAATTCGGTGATATTCAA+AGG | 0.443869 | 6_4:+15396999 | Msa0979070:CDS |
| GCAGCTATAGGCTTTGTTTG+AGG | 0.446945 | 6_4:-15401272 | None:intergenic |
| TATGTTATTGGCAACCCTCT+TGG | 0.455964 | 6_4:-15398569 | None:intergenic |
| AAGTAATCTGTATACAAAAC+AGG | 0.458973 | 6_4:+15401562 | Msa0979070:three_prime_UTR |
| AAACAGGCAATAATGTCAAA+TGG | 0.467273 | 6_4:+15401578 | Msa0979070:three_prime_UTR |
| GAGTGCAATCTAAGCGAGCC+CGG | 0.473835 | 6_4:+15398358 | Msa0979070:CDS |
| GATGAAGAAGAAACTGAAGA+TGG | 0.475264 | 6_4:+15396889 | Msa0979070:CDS |
| AGTACGCGACTGGTCAACTT+TGG | 0.475875 | 6_4:-15399408 | None:intergenic |
| ATTGATTGATCTTCCAATAT+GGG | 0.476351 | 6_4:+15401482 | Msa0979070:three_prime_UTR |
| AAGGTAGCATCACCCCATAT+TGG | 0.484344 | 6_4:-15401495 | None:intergenic |
| TGACCCTTGCAGGTATTTGG+CGG | 0.486470 | 6_4:+15401445 | Msa0979070:intron |
| TAGAAGATCATCTGACAGTT+CGG | 0.489089 | 6_4:-15401318 | None:intergenic |
| TGAAGAGGAGAATGCGGCGC+TGG | 0.497542 | 6_4:-15396701 | None:intergenic |
| ACCGGAATCGGAATCGGAAA+CGG | 0.504799 | 6_4:+15396838 | Msa0979070:CDS |
| GGGTTGAGGAGTGAGAGAAG+AGG | 0.509291 | 6_4:-15396622 | None:intergenic |
| CAAAACCAATCTTATTCAGA+AGG | 0.513122 | 6_4:+15398387 | Msa0979070:CDS |
| CAATAAATGTGTTGCCAAGA+GGG | 0.521284 | 6_4:+15398555 | Msa0979070:CDS |
| GGAGAATGCGGCGCTGGAGA+AGG | 0.535155 | 6_4:-15396695 | None:intergenic |
| CAGCCTTTAAGAGAGCTACT+CGG | 0.537546 | 6_4:+15399327 | Msa0979070:intron |
| AGCCTTTAAGAGAGCTACTC+GGG | 0.541936 | 6_4:+15399328 | Msa0979070:intron |
| AGTGCAATCTAAGCGAGCCC+GGG | 0.552088 | 6_4:+15398359 | Msa0979070:CDS |
| AGCTTAACATGATCCATATG+AGG | 0.555099 | 6_4:-15396962 | None:intergenic |
| TAATATTCCAAAGGTCATAG+TGG | 0.556585 | 6_4:-15399181 | None:intergenic |
| AACACGTGGAAAGAGTGGTT+CGG | 0.563570 | 6_4:+15401243 | Msa0979070:CDS |
| AGTACTTAAGCAAGTTCAAG+TGG | 0.565506 | 6_4:+15399204 | Msa0979070:CDS |
| TCAAATGAATAAATACATCA+AGG | 0.570617 | 6_4:-15401514 | None:intergenic |
| ACGGTGGAATTGTGCGGCGG+TGG | 0.571405 | 6_4:-15396667 | None:intergenic |
| GGTGGTGTTGCCGGAGTTTG+GGG | 0.574285 | 6_4:-15396649 | None:intergenic |
| TATAGATGAGAGGTTAAAGA+AGG | 0.576388 | 6_4:+15399439 | Msa0979070:CDS |
| TTAAGTACTTAATATTCCAA+AGG | 0.580883 | 6_4:-15399190 | None:intergenic |
| AGGATTTATCTCGCTCCTCA+AGG | 0.590350 | 6_4:+15397019 | Msa0979070:CDS |
| AAAACCAATCTTATTCAGAA+GGG | 0.593711 | 6_4:+15398388 | Msa0979070:CDS |
| TAGCGTTCAAAGTACGCGAC+TGG | 0.594885 | 6_4:-15399418 | None:intergenic |
| GGTTCAACACGTGGAAAGAG+TGG | 0.597276 | 6_4:+15401238 | Msa0979070:CDS |
| CCAATAAATGTGTTGCCAAG+AGG | 0.600706 | 6_4:+15398554 | Msa0979070:CDS |
| GCTGGAGAAGGTTGCGACGG+TGG | 0.611964 | 6_4:-15396683 | None:intergenic |
| TCGCCTTGCACAGAAGCAGA+AGG | 0.613936 | 6_4:+15401217 | Msa0979070:intron |
| CTTTGAACGCTATAGATGAG+AGG | 0.616917 | 6_4:+15399429 | Msa0979070:CDS |
| GGCTCGCTTAGATTGCACTC+TGG | 0.621627 | 6_4:-15398355 | None:intergenic |
| GATGATCTAACTGAAGAACT+AGG | 0.628548 | 6_4:+15399227 | Msa0979070:CDS |
| CAACCCTAAACCCCAAACTC+CGG | 0.634846 | 6_4:+15396639 | Msa0979070:five_prime_UTR |
| GGCGCTGGAGAAGGTTGCGA+CGG | 0.635475 | 6_4:-15396686 | None:intergenic |
| TTTGGTTGAAGAGGAGAATG+CGG | 0.636426 | 6_4:-15396707 | None:intergenic |
| GTTGCGACGGTGGAATTGTG+CGG | 0.651840 | 6_4:-15396673 | None:intergenic |
| GCGACGGTGGAATTGTGCGG+CGG | 0.653893 | 6_4:-15396670 | None:intergenic |
| GCGAAGAAAGCTAATATGCG+AGG | 0.657487 | 6_4:+15396914 | Msa0979070:CDS |
| TTGATTGATCTTCCAATATG+GGG | 0.663468 | 6_4:+15401483 | Msa0979070:three_prime_UTR |
| GTACTTAAGCAAGTTCAAGT+GGG | 0.663871 | 6_4:+15399205 | Msa0979070:CDS |
| TTAACATGATCCATATGAGG+AGG | 0.667619 | 6_4:-15396959 | None:intergenic |
| GAAGCAGAAGGTTCAACACG+TGG | 0.694670 | 6_4:+15401229 | Msa0979070:intron |
| GTAACAGAACATGGAAAACG+AGG | 0.694921 | 6_4:-15401625 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACTATATTAATATAG+TGG | + | chr6_4:15398153-15398172 | Msa0979070:intron | 10.0% |
| !!! | ATTTTAAACATCAAATAAAT+AGG | + | chr6_4:15398791-15398810 | Msa0979070:intron | 10.0% |
| !!! | TTTCATTTAGTTATAAATTT+TGG | - | chr6_4:15399485-15399504 | None:intergenic | 10.0% |
| !! | ATAATCAAATAACATTATAT+TGG | - | chr6_4:15401722-15401741 | None:intergenic | 10.0% |
| !! | TTATAGCAAAAGATAAAATA+AGG | + | chr6_4:15397177-15397196 | Msa0979070:intron | 15.0% |
| !! | AAAATAAGGTTAAATAGTTT+AGG | + | chr6_4:15397191-15397210 | Msa0979070:intron | 15.0% |
| !!! | TGTATTTTTGTTTAACAAAT+TGG | + | chr6_4:15397428-15397447 | Msa0979070:intron | 15.0% |
| !!! | AATATAGTTTTATTTTCCAT+TGG | - | chr6_4:15398146-15398165 | None:intergenic | 15.0% |
| !! | GAAATGATCTTATTAAATAT+TGG | + | chr6_4:15398183-15398202 | Msa0979070:intron | 15.0% |
| !!! | TTAAATGTTTAATTTGATCT+TGG | + | chr6_4:15398427-15398446 | Msa0979070:intron | 15.0% |
| !! | TATATTATGTGGAAAAAAAA+TGG | + | chr6_4:15398870-15398889 | Msa0979070:intron | 15.0% |
| !!! | AATAAAAATAATTCTAGAGT+TGG | - | chr6_4:15399005-15399024 | None:intergenic | 15.0% |
| !! | TCAAATGATAAAATAAAGAT+AGG | - | chr6_4:15399642-15399661 | None:intergenic | 15.0% |
| !!! | TTATTTTATCATTTGAATGA+AGG | + | chr6_4:15399646-15399665 | Msa0979070:intron | 15.0% |
| !!! | CTTTTCTGTAAAAAAAAAAA+AGG | + | chr6_4:15399672-15399691 | Msa0979070:intron | 15.0% |
| !! | TGACATATTTACAAAATTAA+AGG | - | chr6_4:15401381-15401400 | None:intergenic | 15.0% |
| !! | ATTGGAGAAAAATGAAAATA+AGG | + | chr6_4:15397237-15397256 | Msa0979070:intron | 20.0% |
| !! | CAAAAAATCTATTCAACAAA+TGG | - | chr6_4:15397665-15397684 | None:intergenic | 20.0% |
| !!! | CTAATTTTATAAACTTCCTA+TGG | - | chr6_4:15397965-15397984 | None:intergenic | 20.0% |
| !!! | TTTGACTTTTAATTCTTACA+TGG | + | chr6_4:15398676-15398695 | Msa0979070:intron | 20.0% |
| !!! | TTTTAATTCTTACATGGAAA+TGG | + | chr6_4:15398682-15398701 | Msa0979070:intron | 20.0% |
| !!! | ATTAGTAATTGATAATGTGT+TGG | + | chr6_4:15398766-15398785 | Msa0979070:intron | 20.0% |
| !!! | AATTCTATTTTGTTTACCTA+GGG | + | chr6_4:15399138-15399157 | Msa0979070:intron | 20.0% |
| !! | TTAAGTACTTAATATTCCAA+AGG | - | chr6_4:15399193-15399212 | None:intergenic | 20.0% |
| !! | ATTTGTCGATAAATAAAATC+AGG | - | chr6_4:15399273-15399292 | None:intergenic | 20.0% |
| !!! | GATTTTATTTATCGACAAAT+AGG | + | chr6_4:15399273-15399292 | Msa0979070:intron | 20.0% |
| !!! | CACAATGTTATTTTCTTAAT+GGG | - | chr6_4:15399544-15399563 | None:intergenic | 20.0% |
| !!! | TCACAATGTTATTTTCTTAA+TGG | - | chr6_4:15399545-15399564 | None:intergenic | 20.0% |
| !! | AAGAAAATAACATTGTGATT+AGG | + | chr6_4:15399547-15399566 | Msa0979070:intron | 20.0% |
| !!! | AAGTTTTTGAAAGTTTGTTT+AGG | + | chr6_4:15399880-15399899 | Msa0979070:intron | 20.0% |
| !! | TTCATTCTGTAAAAATGATA+AGG | + | chr6_4:15400254-15400273 | Msa0979070:intron | 20.0% |
| !!! | ATTGTTTTCAAATATGGTTT+CGG | + | chr6_4:15400281-15400300 | Msa0979070:intron | 20.0% |
| !!! | TATCAACAATTTTCATTGTT+AGG | - | chr6_4:15400568-15400587 | None:intergenic | 20.0% |
| !! | ACTTCAATGTATAAGAATAT+TGG | + | chr6_4:15400616-15400635 | Msa0979070:intron | 20.0% |
| !! | CTTCAATGTATAAGAATATT+GGG | + | chr6_4:15400617-15400636 | Msa0979070:intron | 20.0% |
| !! | TCAAATGAATAAATACATCA+AGG | - | chr6_4:15401517-15401536 | None:intergenic | 20.0% |
| !! | GTATTTATTCATTTGAATTC+AGG | + | chr6_4:15401521-15401540 | Msa0979070:three_prime_UTR | 20.0% |
| !!! | ATAGTTCTGATGTGTTTTTT+TGG | - | chr6_4:15396728-15396747 | None:intergenic | 25.0% |
| ! | ATCAACAAAAATGAAAGTTC+CGG | + | chr6_4:15396751-15396770 | Msa0979070:exon | 25.0% |
| ! | GAATGATGAAAATTCGAATT+CGG | + | chr6_4:15396814-15396833 | Msa0979070:CDS | 25.0% |
| ! | TATAAGTTGTTAAGCTACAT+TGG | + | chr6_4:15397219-15397238 | Msa0979070:intron | 25.0% |
| ! | AAATAGTCTCAGAAAACTTA+TGG | + | chr6_4:15397309-15397328 | Msa0979070:intron | 25.0% |
| !! | TGAACATAATAGAGTTTGTT+TGG | - | chr6_4:15397361-15397380 | None:intergenic | 25.0% |
| ! | TGATATATGAAGCACATATA+TGG | + | chr6_4:15397467-15397486 | Msa0979070:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+TGG | + | chr6_4:15397541-15397560 | Msa0979070:intron | 25.0% |
| ! | AAGTATCTAATCTCATACTT+CGG | + | chr6_4:15397731-15397750 | Msa0979070:intron | 25.0% |
| ! | AATCACTTAATCTCATAATC+AGG | + | chr6_4:15397848-15397867 | Msa0979070:intron | 25.0% |
| ! | ATCACTTAATCTCATAATCA+GGG | + | chr6_4:15397849-15397868 | Msa0979070:intron | 25.0% |
| !! | TTTCTTTATATTTGAAACCG+CGG | + | chr6_4:15398216-15398235 | Msa0979070:intron | 25.0% |
| !!! | TTCTGAATAAGATTGGTTTT+GGG | - | chr6_4:15398388-15398407 | None:intergenic | 25.0% |
| ! | AAAACCAATCTTATTCAGAA+GGG | + | chr6_4:15398388-15398407 | Msa0979070:CDS | 25.0% |
| !!! | GTTTAATTTGATCTTGGAAT+TGG | + | chr6_4:15398433-15398452 | Msa0979070:intron | 25.0% |
| ! | GATCAGTATCTAATTTAAGT+TGG | + | chr6_4:15398460-15398479 | Msa0979070:intron | 25.0% |
| ! | TTGTTCACCATTTATGTTAT+TGG | - | chr6_4:15398584-15398603 | None:intergenic | 25.0% |
| ! | AACATAAATGGTGAACAAAT+AGG | + | chr6_4:15398586-15398605 | Msa0979070:CDS | 25.0% |
| ! | TTGTAAATTAGCTGAAGATA+AGG | + | chr6_4:15398731-15398750 | Msa0979070:intron | 25.0% |
| ! | TTTCTTATTGTAAATGACTC+TGG | + | chr6_4:15398828-15398847 | Msa0979070:intron | 25.0% |
| !! | GATTACTTTGCTATATTATG+TGG | + | chr6_4:15398859-15398878 | Msa0979070:intron | 25.0% |
| !! | CTTTTCTGTTTGCAATAATT+TGG | + | chr6_4:15399100-15399119 | Msa0979070:intron | 25.0% |
| !!! | GAATTCTATTTTGTTTACCT+AGG | + | chr6_4:15399137-15399156 | Msa0979070:intron | 25.0% |
| !!! | ATTCTATTTTGTTTACCTAG+GGG | + | chr6_4:15399139-15399158 | Msa0979070:intron | 25.0% |
| ! | ACGGAATATTCTGTTATAAA+AGG | + | chr6_4:15399827-15399846 | Msa0979070:intron | 25.0% |
| ! | CGGAATATTCTGTTATAAAA+GGG | + | chr6_4:15399828-15399847 | Msa0979070:intron | 25.0% |
| ! | AATATTCTGTTATAAAAGGG+AGG | + | chr6_4:15399831-15399850 | Msa0979070:intron | 25.0% |
| ! | ATATTCTGTTATAAAAGGGA+GGG | + | chr6_4:15399832-15399851 | Msa0979070:intron | 25.0% |
| !! | TAGATTTGTCCTTTAAGAAT+CGG | - | chr6_4:15400083-15400102 | None:intergenic | 25.0% |
| !!! | TCATTTTTACAGAATGAATC+TGG | - | chr6_4:15400252-15400271 | None:intergenic | 25.0% |
| !! | GGCAAAATTGTTTTCAAATA+TGG | + | chr6_4:15400275-15400294 | Msa0979070:intron | 25.0% |
| ! | TAATGAGTTCTATCCAAATA+TGG | + | chr6_4:15400326-15400345 | Msa0979070:intron | 25.0% |
| ! | TACATTGAAGTTCTCAAAAT+TGG | - | chr6_4:15400607-15400626 | None:intergenic | 25.0% |
| ! | ATGTATAAGAATATTGGGTT+TGG | + | chr6_4:15400622-15400641 | Msa0979070:intron | 25.0% |
| !!! | TATGAGTTTTATTCCCTTTT+TGG | + | chr6_4:15400728-15400747 | Msa0979070:intron | 25.0% |
| !!! | ATGAGTTTTATTCCCTTTTT+GGG | + | chr6_4:15400729-15400748 | Msa0979070:intron | 25.0% |
| !!! | TTTCTGATTCCTCTTTATTT+TGG | + | chr6_4:15400849-15400868 | Msa0979070:intron | 25.0% |
| !!! | TTCTGATTCCTCTTTATTTT+GGG | + | chr6_4:15400850-15400869 | Msa0979070:intron | 25.0% |
| ! | AAGATATTAAGAACTTAGAG+TGG | - | chr6_4:15400878-15400897 | None:intergenic | 25.0% |
| ! | AATGAGTAGTATGTATATTG+AGG | + | chr6_4:15401183-15401202 | Msa0979070:intron | 25.0% |
| !! | TATTGATTGATCTTCCAATA+TGG | + | chr6_4:15401481-15401500 | Msa0979070:three_prime_UTR | 25.0% |
| ! | ATTGATTGATCTTCCAATAT+GGG | + | chr6_4:15401482-15401501 | Msa0979070:three_prime_UTR | 25.0% |
| !!! | TTGAATTCAGGTTTTAAAAC+TGG | + | chr6_4:15401533-15401552 | Msa0979070:three_prime_UTR | 25.0% |
| ! | AAGTAATCTGTATACAAAAC+AGG | + | chr6_4:15401562-15401581 | Msa0979070:three_prime_UTR | 25.0% |
| !! | TAACATTTTGTAACAGAACA+TGG | - | chr6_4:15401637-15401656 | None:intergenic | 25.0% |
| ! | ATTCTAGACAACAATAGATT+TGG | - | chr6_4:15401683-15401702 | None:intergenic | 25.0% |
| AGAGAAGAGGATTTGAATTA+GGG | - | chr6_4:15396612-15396631 | None:intergenic | 30.0% | |
| !!! | ATGTGTTTTTTTGGTTGAAG+AGG | - | chr6_4:15396719-15396738 | None:intergenic | 30.0% |
| AATAAGGTGAAAACAGCTTA+TGG | + | chr6_4:15397253-15397272 | Msa0979070:intron | 30.0% | |
| ATAAGGTGAAAACAGCTTAT+GGG | + | chr6_4:15397254-15397273 | Msa0979070:intron | 30.0% | |
| ! | TGTTTAACAAATTGGCTCAT+AGG | + | chr6_4:15397436-15397455 | Msa0979070:intron | 30.0% |
| ! | GTGATTTTCTCAAATTGTGT+TGG | - | chr6_4:15397517-15397536 | None:intergenic | 30.0% |
| ! | GTAATTATATGTGTTGGTGT+CGG | + | chr6_4:15397547-15397566 | Msa0979070:intron | 30.0% |
| TTATCATATCCTATGAAGCA+CGG | - | chr6_4:15397636-15397655 | None:intergenic | 30.0% | |
| ATACAACATAGTACTCACTT+GGG | + | chr6_4:15397692-15397711 | Msa0979070:intron | 30.0% | |
| AGTATCTAATCTCATACTTC+GGG | + | chr6_4:15397732-15397751 | Msa0979070:intron | 30.0% | |
| AAACGTCAGATAGTTTCAAA+CGG | - | chr6_4:15397802-15397821 | None:intergenic | 30.0% | |
| ATAGCTAATATAAGCAGCTT+AGG | + | chr6_4:15397933-15397952 | Msa0979070:intron | 30.0% | |
| GTAAGTTTATTATCCAAGCT+TGG | + | chr6_4:15398000-15398019 | Msa0979070:intron | 30.0% | |
| TTTCTTGATAAAACCAAGCT+TGG | - | chr6_4:15398016-15398035 | None:intergenic | 30.0% | |
| ATCAGATAAAGAAGATTAGC+AGG | - | chr6_4:15398050-15398069 | None:intergenic | 30.0% | |
| !! | AAAAGTACTCATTTATTCCG+CGG | - | chr6_4:15398236-15398255 | None:intergenic | 30.0% |
| ATATATCACTCTCTATTGTC+TGG | - | chr6_4:15398270-15398289 | None:intergenic | 30.0% | |
| GAGAGTGATATATTACTACT+TGG | + | chr6_4:15398277-15398296 | Msa0979070:intron | 30.0% | |
| !! | TACTTGGTTAGTTCTAAAGT+TGG | + | chr6_4:15398293-15398312 | Msa0979070:intron | 30.0% |
| !!! | CTTCTGAATAAGATTGGTTT+TGG | - | chr6_4:15398389-15398408 | None:intergenic | 30.0% |
| CAAAACCAATCTTATTCAGA+AGG | + | chr6_4:15398387-15398406 | Msa0979070:CDS | 30.0% | |
| ATTTGATCTTGGAATTGGAT+TGG | + | chr6_4:15398438-15398457 | Msa0979070:intron | 30.0% | |
| TATTGTAAATGACTCTGGTA+TGG | + | chr6_4:15398833-15398852 | Msa0979070:intron | 30.0% | |
| !! | TTCTATTTTGTTTACCTAGG+GGG | + | chr6_4:15399140-15399159 | Msa0979070:intron | 30.0% |
| TAATATTCCAAAGGTCATAG+TGG | - | chr6_4:15399184-15399203 | None:intergenic | 30.0% | |
| CGATAAATAAAATCAGGAAC+TGG | - | chr6_4:15399267-15399286 | None:intergenic | 30.0% | |
| ATAGAAATCTCTCTCTTTCT+TGG | - | chr6_4:15399384-15399403 | None:intergenic | 30.0% | |
| TATAGATGAGAGGTTAAAGA+AGG | + | chr6_4:15399439-15399458 | Msa0979070:CDS | 30.0% | |
| GCTGAAATTGAATTAAGTCA+TGG | - | chr6_4:15399516-15399535 | None:intergenic | 30.0% | |
| TAGAAGATAGTAGAAGTAGA+AGG | + | chr6_4:15399766-15399785 | Msa0979070:intron | 30.0% | |
| ! | TAGCACTTTCCTTGATTTTA+CGG | + | chr6_4:15399808-15399827 | Msa0979070:intron | 30.0% |
| CAGAATATTCCGTAAAATCA+AGG | - | chr6_4:15399820-15399839 | None:intergenic | 30.0% | |
| ! | CAGTTCGTTTCTTGATTTTT+CGG | + | chr6_4:15400038-15400057 | Msa0979070:intron | 30.0% |
| ! | AGTTCGTTTCTTGATTTTTC+GGG | + | chr6_4:15400039-15400058 | Msa0979070:intron | 30.0% |
| !!! | GTTTCCTTTTGGTTTTCATA+TGG | + | chr6_4:15400148-15400167 | Msa0979070:intron | 30.0% |
| GCAGTAAAAACACTATCATA+TGG | - | chr6_4:15400200-15400219 | None:intergenic | 30.0% | |
| CAAATATGGTTTCGGATATT+AGG | + | chr6_4:15400289-15400308 | Msa0979070:intron | 30.0% | |
| GGATATTAGGAAAGATTTAG+AGG | + | chr6_4:15400302-15400321 | Msa0979070:intron | 30.0% | |
| GTTCTATCCAAATATGGTTT+CGG | + | chr6_4:15400332-15400351 | Msa0979070:intron | 30.0% | |
| ! | TACAGAGAGAACATTTTCAT+TGG | - | chr6_4:15400447-15400466 | None:intergenic | 30.0% |
| TGAAAATGTTCTCTCTGTAA+TGG | + | chr6_4:15400448-15400467 | Msa0979070:intron | 30.0% | |
| ! | TTGCTGCAAATTTAAGATGT+TGG | + | chr6_4:15400648-15400667 | Msa0979070:intron | 30.0% |
| ! | ATGAGTTTTTGACCCAAAAA+GGG | - | chr6_4:15400744-15400763 | None:intergenic | 30.0% |
| ! | AATGAGTTTTTGACCCAAAA+AGG | - | chr6_4:15400745-15400764 | None:intergenic | 30.0% |
| TAGAATCAAACATCATCAAG+CGG | - | chr6_4:15400772-15400791 | None:intergenic | 30.0% | |
| ! | CAGAATGCACAAATTTTCTA+TGG | - | chr6_4:15400827-15400846 | None:intergenic | 30.0% |
| !!! | TCTGATTCCTCTTTATTTTG+GGG | + | chr6_4:15400851-15400870 | Msa0979070:intron | 30.0% |
| TAAATTGTCGCAAATTCTAG+TGG | - | chr6_4:15401043-15401062 | None:intergenic | 30.0% | |
| TTGATTGATCTTCCAATATG+GGG | + | chr6_4:15401483-15401502 | Msa0979070:three_prime_UTR | 30.0% | |
| AAACAGGCAATAATGTCAAA+TGG | + | chr6_4:15401578-15401597 | Msa0979070:three_prime_UTR | 30.0% | |
| GAGAGAAGAGGATTTGAATT+AGG | - | chr6_4:15396613-15396632 | None:intergenic | 35.0% | |
| AACAAAAATGAAAGTTCCGG+AGG | + | chr6_4:15396754-15396773 | Msa0979070:exon | 35.0% | |
| TGAAAATTCGAATTCGGAAC+CGG | + | chr6_4:15396820-15396839 | Msa0979070:CDS | 35.0% | |
| GATGAAGAAGAAACTGAAGA+TGG | + | chr6_4:15396889-15396908 | Msa0979070:CDS | 35.0% | |
| TTAACATGATCCATATGAGG+AGG | - | chr6_4:15396962-15396981 | None:intergenic | 35.0% | |
| AGCTTAACATGATCCATATG+AGG | - | chr6_4:15396965-15396984 | None:intergenic | 35.0% | |
| ! | AACAAATTGGCTCATAGGAT+AGG | + | chr6_4:15397441-15397460 | Msa0979070:intron | 35.0% |
| ACATATATGGACACAGATAC+CGG | + | chr6_4:15397480-15397499 | Msa0979070:intron | 35.0% | |
| TATCATATCCTATGAAGCAC+GGG | - | chr6_4:15397635-15397654 | None:intergenic | 35.0% | |
| CATACAACATAGTACTCACT+TGG | + | chr6_4:15397691-15397710 | Msa0979070:intron | 35.0% | |
| TACAACATAGTACTCACTTG+GGG | + | chr6_4:15397693-15397712 | Msa0979070:intron | 35.0% | |
| GTATCTAATCTCATACTTCG+GGG | + | chr6_4:15397733-15397752 | Msa0979070:intron | 35.0% | |
| TAGTTTCAAACGGACACTTA+TGG | - | chr6_4:15397792-15397811 | None:intergenic | 35.0% | |
| !! | TGGTTAGTTCTAAAGTTGGT+TGG | + | chr6_4:15398297-15398316 | Msa0979070:intron | 35.0% |
| ATCACCCTTCTGAATAAGAT+TGG | - | chr6_4:15398395-15398414 | None:intergenic | 35.0% | |
| TTGCTTTGTGATTGTGTAGA+TGG | + | chr6_4:15398521-15398540 | Msa0979070:intron | 35.0% | |
| TGCTTTGTGATTGTGTAGAT+GGG | + | chr6_4:15398522-15398541 | Msa0979070:intron | 35.0% | |
| CAATAAATGTGTTGCCAAGA+GGG | + | chr6_4:15398555-15398574 | Msa0979070:CDS | 35.0% | |
| AGGGTTGCCAATAACATAAA+TGG | + | chr6_4:15398574-15398593 | Msa0979070:CDS | 35.0% | |
| ! | GGAAAAAAAATGGTGTTAGC+AGG | + | chr6_4:15398880-15398899 | Msa0979070:intron | 35.0% |
| !!! | GGGGATATACATGTTTTTTC+CGG | + | chr6_4:15398917-15398936 | Msa0979070:intron | 35.0% |
| AGTACTTAAGCAAGTTCAAG+TGG | + | chr6_4:15399204-15399223 | Msa0979070:CDS | 35.0% | |
| GTACTTAAGCAAGTTCAAGT+GGG | + | chr6_4:15399205-15399224 | Msa0979070:CDS | 35.0% | |
| GATGATCTAACTGAAGAACT+AGG | + | chr6_4:15399227-15399246 | Msa0979070:CDS | 35.0% | |
| ! | TGAAAGTTTGTTTAGGCCTT+AGG | + | chr6_4:15399887-15399906 | Msa0979070:intron | 35.0% |
| ! | GAAAGTTTGTTTAGGCCTTA+GGG | + | chr6_4:15399888-15399907 | Msa0979070:intron | 35.0% |
| ! | AAAGTTTGTTTAGGCCTTAG+GGG | + | chr6_4:15399889-15399908 | Msa0979070:intron | 35.0% |
| !! | TGTAGTAACTTAGCTCTGAT+AGG | + | chr6_4:15399927-15399946 | Msa0979070:intron | 35.0% |
| ! | AGCTTTACAATGGTGGAAAT+AGG | - | chr6_4:15399985-15400004 | None:intergenic | 35.0% |
| AAACCTTCTCCGATTCTTAA+AGG | + | chr6_4:15400071-15400090 | Msa0979070:intron | 35.0% | |
| !!! | GTCTTGATGTTGTTTCCTTT+TGG | + | chr6_4:15400137-15400156 | Msa0979070:intron | 35.0% |
| ACAGCCATATGAAAACCAAA+AGG | - | chr6_4:15400155-15400174 | None:intergenic | 35.0% | |
| GTTCTATCCGAAACCATATT+TGG | - | chr6_4:15400342-15400361 | None:intergenic | 35.0% | |
| TGGTTTCGGATAGAACATTA+TGG | + | chr6_4:15400346-15400365 | Msa0979070:intron | 35.0% | |
| AAATGTTCTCTCTGTAATGG+TGG | + | chr6_4:15400451-15400470 | Msa0979070:intron | 35.0% | |
| !! | ATGTTGGTTTGTGATTTGCT+AGG | + | chr6_4:15400664-15400683 | Msa0979070:intron | 35.0% |
| !! | TGTTGGTTTGTGATTTGCTA+GGG | + | chr6_4:15400665-15400684 | Msa0979070:intron | 35.0% |
| !! | TTTGTGATTTGCTAGGGATA+GGG | + | chr6_4:15400671-15400690 | Msa0979070:intron | 35.0% |
| AGAATCAAACATCATCAAGC+GGG | - | chr6_4:15400771-15400790 | None:intergenic | 35.0% | |
| TCCTTAAAGCCAGAATAGAT+TGG | + | chr6_4:15400933-15400952 | Msa0979070:intron | 35.0% | |
| TAGAAGATCATCTGACAGTT+CGG | - | chr6_4:15401321-15401340 | None:intergenic | 35.0% | |
| GTCAACATGTGTGAAATCAT+TGG | + | chr6_4:15401397-15401416 | Msa0979070:intron | 35.0% | |
| TTTGGTTGAAGAGGAGAATG+CGG | - | chr6_4:15396710-15396729 | None:intergenic | 40.0% | |
| !! | ATCTCGTTGTTTTCTTCCTC+CGG | - | chr6_4:15396773-15396792 | None:intergenic | 40.0% |
| CGTCAACTTCTTTCGCAATT+CGG | + | chr6_4:15396986-15397005 | Msa0979070:CDS | 40.0% | |
| ! | CGCAATTCGGTGATATTCAA+AGG | + | chr6_4:15396999-15397018 | Msa0979070:CDS | 40.0% |
| AGCTATCTCAAGCAATCTCA+TGG | - | chr6_4:15397919-15397938 | None:intergenic | 40.0% | |
| CGTAAAATAAGTTCACACGC+AGG | - | chr6_4:15398108-15398127 | None:intergenic | 40.0% | |
| GAAACTCTTCAAAGAGCCAA+TGG | + | chr6_4:15398127-15398146 | Msa0979070:intron | 40.0% | |
| CCTCTTGGCAACACATTTAT+TGG | - | chr6_4:15398557-15398576 | None:intergenic | 40.0% | |
| CCAATAAATGTGTTGCCAAG+AGG | + | chr6_4:15398554-15398573 | Msa0979070:CDS | 40.0% | |
| TATGTTATTGGCAACCCTCT+TGG | - | chr6_4:15398572-15398591 | None:intergenic | 40.0% | |
| GTAAATGACTCTGGTATGGA+CGG | + | chr6_4:15398837-15398856 | Msa0979070:intron | 40.0% | |
| TAGCAGGATTATGCACTTCT+AGG | + | chr6_4:15398896-15398915 | Msa0979070:intron | 40.0% | |
| AGCAGGATTATGCACTTCTA+GGG | + | chr6_4:15398897-15398916 | Msa0979070:intron | 40.0% | |
| ! | TAACAGTGTTTTCTTGTCGC+TGG | + | chr6_4:15399066-15399085 | Msa0979070:intron | 40.0% |
| CATCTTTCCACTATGACCTT+TGG | + | chr6_4:15399174-15399193 | Msa0979070:CDS | 40.0% | |
| CTTTGAACGCTATAGATGAG+AGG | + | chr6_4:15399429-15399448 | Msa0979070:CDS | 40.0% | |
| AATTGGGCCAACTAGCATAT+TGG | - | chr6_4:15399716-15399735 | None:intergenic | 40.0% | |
| ATGCTAGTTGGCCCAATTAT+TGG | + | chr6_4:15399718-15399737 | Msa0979070:intron | 40.0% | |
| TGCTAGTTGGCCCAATTATT+GGG | + | chr6_4:15399719-15399738 | Msa0979070:intron | 40.0% | |
| GTAAAGTGGGCCCAATAATT+GGG | - | chr6_4:15399732-15399751 | None:intergenic | 40.0% | |
| TGTAAAGTGGGCCCAATAAT+TGG | - | chr6_4:15399733-15399752 | None:intergenic | 40.0% | |
| !! | AAAGAGCGCTCATGTAAAGT+GGG | - | chr6_4:15399745-15399764 | None:intergenic | 40.0% |
| TCTGTTATAAAAGGGAGGGA+AGG | + | chr6_4:15399836-15399855 | Msa0979070:intron | 40.0% | |
| CTGTTATAAAAGGGAGGGAA+GGG | + | chr6_4:15399837-15399856 | Msa0979070:intron | 40.0% | |
| TGAGCTCAAGAGCTTTACAA+TGG | - | chr6_4:15399995-15400014 | None:intergenic | 40.0% | |
| ! | TGTCCTTTAAGAATCGGAGA+AGG | - | chr6_4:15400077-15400096 | None:intergenic | 40.0% |
| GACAAATCTAGCAAAGACTC+TGG | + | chr6_4:15400093-15400112 | Msa0979070:intron | 40.0% | |
| AACATCAAGACTCGACAATG+AGG | - | chr6_4:15400128-15400147 | None:intergenic | 40.0% | |
| ! | TGGTTTTCATATGGCTGTCA+TGG | + | chr6_4:15400157-15400176 | Msa0979070:intron | 40.0% |
| TTTCATATGGCTGTCATGGT+TGG | + | chr6_4:15400161-15400180 | Msa0979070:intron | 40.0% | |
| TTCTCTCTGTAATGGTGGTA+AGG | + | chr6_4:15400456-15400475 | Msa0979070:intron | 40.0% | |
| GGAAGAAAGTCTTCAACAGT+TGG | - | chr6_4:15400520-15400539 | None:intergenic | 40.0% | |
| CTTCCTATATATTCCTGCTC+AGG | + | chr6_4:15400535-15400554 | Msa0979070:intron | 40.0% | |
| AGTCCTGAGCAGGAATATAT+AGG | - | chr6_4:15400541-15400560 | None:intergenic | 40.0% | |
| !! | GTTTGTGATTTGCTAGGGAT+AGG | + | chr6_4:15400670-15400689 | Msa0979070:intron | 40.0% |
| !! | GCCAATCTATTCTGGCTTTA+AGG | - | chr6_4:15400937-15400956 | None:intergenic | 40.0% |
| GTTAAGATTGTGTCGTGGAA+TGG | + | chr6_4:15400967-15400986 | Msa0979070:intron | 40.0% | |
| !! | CGCAAATTCTAGTGGATTGA+GGG | - | chr6_4:15401035-15401054 | None:intergenic | 40.0% |
| !! | TCGCAAATTCTAGTGGATTG+AGG | - | chr6_4:15401036-15401055 | None:intergenic | 40.0% |
| !! | CAGCTATAGGCTTTGTTTGA+GGG | - | chr6_4:15401274-15401293 | None:intergenic | 40.0% |
| TTAGCATTAGCAGCAGCTAT+AGG | - | chr6_4:15401287-15401306 | None:intergenic | 40.0% | |
| GTAACAGAACATGGAAAACG+AGG | - | chr6_4:15401628-15401647 | None:intergenic | 40.0% | |
| TTCGAATTCGGAACCGGAAT+CGG | + | chr6_4:15396826-15396845 | Msa0979070:CDS | 45.0% | |
| ATCGGAATCGGAAACGGAAA+TGG | + | chr6_4:15396844-15396863 | Msa0979070:CDS | 45.0% | |
| GCGAAGAAAGCTAATATGCG+AGG | + | chr6_4:15396914-15396933 | Msa0979070:CDS | 45.0% | |
| GAGTCGAATTCCTCCTCATA+TGG | + | chr6_4:15396949-15396968 | Msa0979070:CDS | 45.0% | |
| AGGATTTATCTCGCTCCTCA+AGG | + | chr6_4:15397019-15397038 | Msa0979070:CDS | 45.0% | |
| AGAGAGAACGAGATACCTTG+AGG | - | chr6_4:15397037-15397056 | None:intergenic | 45.0% | |
| ! | ACGTCTTCGATCAGAAGTGT+CGG | - | chr6_4:15397066-15397085 | None:intergenic | 45.0% |
| GTGTAAGTGTGTGTCAGTGT+TGG | - | chr6_4:15397095-15397114 | None:intergenic | 45.0% | |
| ACATAGTACTCACTTGGGGT+TGG | + | chr6_4:15397697-15397716 | Msa0979070:intron | 45.0% | |
| CATAGTACTCACTTGGGGTT+GGG | + | chr6_4:15397698-15397717 | Msa0979070:intron | 45.0% | |
| GCAGCTTAGGATATGTCCAT+AGG | + | chr6_4:15397946-15397965 | Msa0979070:intron | 45.0% | |
| TGCACTCTGGCATTAGAATC+TGG | - | chr6_4:15398345-15398364 | None:intergenic | 45.0% | |
| !!! | AAGATTGGTTTTGGGATGCC+CGG | - | chr6_4:15398380-15398399 | None:intergenic | 45.0% |
| GCAGGATTATGCACTTCTAG+GGG | + | chr6_4:15398898-15398917 | Msa0979070:intron | 45.0% | |
| TTTACCTAGGGGGAAGAAAG+AGG | + | chr6_4:15399150-15399169 | Msa0979070:intron | 45.0% | |
| ! | CAGCCTTTAAGAGAGCTACT+CGG | + | chr6_4:15399327-15399346 | Msa0979070:intron | 45.0% |
| ! | AGCCTTTAAGAGAGCTACTC+GGG | + | chr6_4:15399328-15399347 | Msa0979070:intron | 45.0% |
| AAAAGGCTGATAGAACGCCA+AGG | + | chr6_4:15399689-15399708 | Msa0979070:intron | 45.0% | |
| CCAACTAGCATATTGGACCT+TGG | - | chr6_4:15399709-15399728 | None:intergenic | 45.0% | |
| CCAAGGTCCAATATGCTAGT+TGG | + | chr6_4:15399706-15399725 | Msa0979070:intron | 45.0% | |
| !! | GAAAGAGCGCTCATGTAAAG+TGG | - | chr6_4:15399746-15399765 | None:intergenic | 45.0% |
| CAGAGAGAACTTATCCCCTA+AGG | - | chr6_4:15399906-15399925 | None:intergenic | 45.0% | |
| CTTAGGGGATAAGTTCTCTC+TGG | + | chr6_4:15399904-15399923 | Msa0979070:intron | 45.0% | |
| GCTCAAGAGCTTTACAATGG+TGG | - | chr6_4:15399992-15400011 | None:intergenic | 45.0% | |
| TCTAGCAAAGACTCTGGCAA+TGG | + | chr6_4:15400099-15400118 | Msa0979070:intron | 45.0% | |
| ACTAAGTGGAGTCGACTACA+TGG | - | chr6_4:15400383-15400402 | None:intergenic | 45.0% | |
| ! | ATGTAGTCGACTCCACTTAG+TGG | + | chr6_4:15400382-15400401 | Msa0979070:intron | 45.0% |
| ! | TGTAGTCGACTCCACTTAGT+GGG | + | chr6_4:15400383-15400402 | Msa0979070:intron | 45.0% |
| TTGCTAGGGATAGGGTTTAG+AGG | + | chr6_4:15400679-15400698 | Msa0979070:intron | 45.0% | |
| GGTTTAGAGGAGTTCAGAAC+TGG | + | chr6_4:15400692-15400711 | Msa0979070:intron | 45.0% | |
| GAGTGGACCCCAAAATAAAG+AGG | - | chr6_4:15400861-15400880 | None:intergenic | 45.0% | |
| CAGAGCTTGCCAATCTATTC+TGG | - | chr6_4:15400945-15400964 | None:intergenic | 45.0% | |
| GAATAGATTGGCAAGCTCTG+TGG | + | chr6_4:15400945-15400964 | Msa0979070:intron | 45.0% | |
| CTGTGGTTAAGATTGTGTCG+TGG | + | chr6_4:15400962-15400981 | Msa0979070:intron | 45.0% | |
| TAGCTGACGCTTTATCGCAT+TGG | + | chr6_4:15401070-15401089 | Msa0979070:intron | 45.0% | |
| AACACGTGGAAAGAGTGGTT+CGG | + | chr6_4:15401243-15401262 | Msa0979070:CDS | 45.0% | |
| !! | GCAGCTATAGGCTTTGTTTG+AGG | - | chr6_4:15401275-15401294 | None:intergenic | 45.0% |
| ATACCTGCAAGGGTCATAGT+GGG | - | chr6_4:15401441-15401460 | None:intergenic | 45.0% | |
| AATACCTGCAAGGGTCATAG+TGG | - | chr6_4:15401442-15401461 | None:intergenic | 45.0% | |
| CTATGACCCTTGCAGGTATT+TGG | + | chr6_4:15401442-15401461 | Msa0979070:intron | 45.0% | |
| AAGGTAGCATCACCCCATAT+TGG | - | chr6_4:15401498-15401517 | None:intergenic | 45.0% | |
| !!! | TTATTTTTATTCTTTATATT+TGG | + | chr6_4:15399014-15399033 | Msa0979070:intron | 5.0% |
| ! | GAGTTTGGGGTTTAGGGTTG+AGG | - | chr6_4:15396639-15396658 | None:intergenic | 50.0% |
| CAACCCTAAACCCCAAACTC+CGG | + | chr6_4:15396639-15396658 | Msa0979070:five_prime_UTR | 50.0% | |
| ! | TTGCCGGAGTTTGGGGTTTA+GGG | - | chr6_4:15396645-15396664 | None:intergenic | 50.0% |
| TTCGGAACCGGAATCGGAAT+CGG | + | chr6_4:15396832-15396851 | Msa0979070:CDS | 50.0% | |
| ACCGGAATCGGAATCGGAAA+CGG | + | chr6_4:15396838-15396857 | Msa0979070:CDS | 50.0% | |
| TCCGTTTCCGATTCCGATTC+CGG | - | chr6_4:15396842-15396861 | None:intergenic | 50.0% | |
| ! | TCCTTGGATTAGGCATGTCC+CGG | - | chr6_4:15397609-15397628 | None:intergenic | 50.0% |
| CTATCTGACGTTTCACGCTC+AGG | + | chr6_4:15397809-15397828 | Msa0979070:intron | 50.0% | |
| TGACGTTTCACGCTCAGGTT+TGG | + | chr6_4:15397814-15397833 | Msa0979070:intron | 50.0% | |
| !!! | AGATTGGTTTTGGGATGCCC+GGG | - | chr6_4:15398379-15398398 | None:intergenic | 50.0% |
| GAAACAGCAGCACACATTGC+CGG | - | chr6_4:15398939-15398958 | None:intergenic | 50.0% | |
| ATGACCTCTTTCTTCCCCCT+AGG | - | chr6_4:15399157-15399176 | None:intergenic | 50.0% | |
| CTCCCGAGTAGCTCTCTTAA+AGG | - | chr6_4:15399333-15399352 | None:intergenic | 50.0% | |
| AGCTACTCGGGAGCAAAAAC+TGG | + | chr6_4:15399340-15399359 | Msa0979070:CDS | 50.0% | |
| ! | AGTACGCGACTGGTCAACTT+TGG | - | chr6_4:15399411-15399430 | None:intergenic | 50.0% |
| TAGCGTTCAAAGTACGCGAC+TGG | - | chr6_4:15399421-15399440 | None:intergenic | 50.0% | |
| GCTGTCATGGTTGGCAATTC+TGG | + | chr6_4:15400170-15400189 | Msa0979070:intron | 50.0% | |
| CGACTCCACTTAGTGGGATA+AGG | + | chr6_4:15400389-15400408 | Msa0979070:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr6_4:15400397-15400416 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr6_4:15400394-15400413 | Msa0979070:intron | 50.0% | |
| GTGTCGTGGAATGGAAGAAC+TGG | + | chr6_4:15400976-15400995 | Msa0979070:intron | 50.0% | |
| GAACCTTCTGCTTCTGTGCA+AGG | - | chr6_4:15401223-15401242 | None:intergenic | 50.0% | |
| GAAGCAGAAGGTTCAACACG+TGG | + | chr6_4:15401229-15401248 | Msa0979070:intron | 50.0% | |
| GGTTCAACACGTGGAAAGAG+TGG | + | chr6_4:15401238-15401257 | Msa0979070:CDS | 50.0% | |
| TTTCCCACTATGACCCTTGC+AGG | + | chr6_4:15401435-15401454 | Msa0979070:intron | 50.0% | |
| TGACCCTTGCAGGTATTTGG+CGG | + | chr6_4:15401445-15401464 | Msa0979070:intron | 50.0% | |
| AAGCCGCCAAATACCTGCAA+GGG | - | chr6_4:15401451-15401470 | None:intergenic | 50.0% | |
| GGGTTGAGGAGTGAGAGAAG+AGG | - | chr6_4:15396625-15396644 | None:intergenic | 55.0% | |
| ! | GTTGCCGGAGTTTGGGGTTT+AGG | - | chr6_4:15396646-15396665 | None:intergenic | 55.0% |
| GTTGCGACGGTGGAATTGTG+CGG | - | chr6_4:15396676-15396695 | None:intergenic | 55.0% | |
| ! | TGTGTTGGCGTGTCAGTGTC+CGG | - | chr6_4:15397502-15397521 | None:intergenic | 55.0% |
| TGTCGGACACGTATCGCTGT+CGG | + | chr6_4:15397564-15397583 | Msa0979070:intron | 55.0% | |
| ACACGATACGTGTCCGACAC+CGG | + | chr6_4:15397587-15397606 | Msa0979070:intron | 55.0% | |
| GATTAGGCATGTCCCGGTGT+CGG | - | chr6_4:15397603-15397622 | None:intergenic | 55.0% | |
| ACCGGGACATGCCTAATCCA+AGG | + | chr6_4:15397605-15397624 | Msa0979070:intron | 55.0% | |
| TATGAAGCACGGGCACTCCT+TGG | - | chr6_4:15397625-15397644 | None:intergenic | 55.0% | |
| !! | AAGGAGTGCCCGTGCTTCAT+AGG | + | chr6_4:15397624-15397643 | Msa0979070:intron | 55.0% |
| GGCTCGCTTAGATTGCACTC+TGG | - | chr6_4:15398358-15398377 | None:intergenic | 55.0% | |
| GAGTGCAATCTAAGCGAGCC+CGG | + | chr6_4:15398358-15398377 | Msa0979070:CDS | 55.0% | |
| AGTGCAATCTAAGCGAGCCC+GGG | + | chr6_4:15398359-15398378 | Msa0979070:CDS | 55.0% | |
| GTTAGGTGTGAGTCCTGAGC+AGG | - | chr6_4:15400551-15400570 | None:intergenic | 55.0% | |
| TCGCCTTGCACAGAAGCAGA+AGG | + | chr6_4:15401217-15401236 | Msa0979070:intron | 55.0% | |
| CAAGCCGCCAAATACCTGCA+AGG | - | chr6_4:15401452-15401471 | None:intergenic | 55.0% | |
| !! | GGTGGTGTTGCCGGAGTTTG+GGG | - | chr6_4:15396652-15396671 | None:intergenic | 60.0% |
| !! | CGGTGGTGTTGCCGGAGTTT+GGG | - | chr6_4:15396653-15396672 | None:intergenic | 60.0% |
| TGAAGAGGAGAATGCGGCGC+TGG | - | chr6_4:15396704-15396723 | None:intergenic | 60.0% | |
| CACGATACGTGTCCGACACC+GGG | + | chr6_4:15397588-15397607 | Msa0979070:intron | 60.0% | |
| GCACGGGCACTCCTTGGATT+AGG | - | chr6_4:15397619-15397638 | None:intergenic | 60.0% | |
| !! | GCGGTGGTGTTGCCGGAGTT+TGG | - | chr6_4:15396654-15396673 | None:intergenic | 65.0% |
| !! | TTGTGCGGCGGTGGTGTTGC+CGG | - | chr6_4:15396661-15396680 | None:intergenic | 65.0% |
| ACGGTGGAATTGTGCGGCGG+TGG | - | chr6_4:15396670-15396689 | None:intergenic | 65.0% | |
| GCGACGGTGGAATTGTGCGG+CGG | - | chr6_4:15396673-15396692 | None:intergenic | 65.0% | |
| GCTGGAGAAGGTTGCGACGG+TGG | - | chr6_4:15396686-15396705 | None:intergenic | 65.0% | |
| ! | GGCGCTGGAGAAGGTTGCGA+CGG | - | chr6_4:15396689-15396708 | None:intergenic | 65.0% |
| ! | GGAGAATGCGGCGCTGGAGA+AGG | - | chr6_4:15396698-15396717 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 15396602 | 15401742 | 15396602 | ID=Msa0979070;Name=Msa0979070 |
| chr6_4 | mRNA | 15396602 | 15401742 | 15396602 | ID=Msa0979070-mRNA-1;Parent=Msa0979070;Name=Msa0979070-mRNA-1;_AED=0.36;_eAED=0.36;_QI=159|1|1|1|1|1|7|268|255 |
| chr6_4 | exon | 15396602 | 15397040 | 15396602 | ID=Msa0979070-mRNA-1:exon:5049;Parent=Msa0979070-mRNA-1 |
| chr6_4 | exon | 15398346 | 15398409 | 15398346 | ID=Msa0979070-mRNA-1:exon:5050;Parent=Msa0979070-mRNA-1 |
| chr6_4 | exon | 15398540 | 15398607 | 15398540 | ID=Msa0979070-mRNA-1:exon:5051;Parent=Msa0979070-mRNA-1 |
| chr6_4 | exon | 15399159 | 15399248 | 15399159 | ID=Msa0979070-mRNA-1:exon:5052;Parent=Msa0979070-mRNA-1 |
| chr6_4 | exon | 15399330 | 15399460 | 15399330 | ID=Msa0979070-mRNA-1:exon:5053;Parent=Msa0979070-mRNA-1 |
| chr6_4 | exon | 15401230 | 15401346 | 15401230 | ID=Msa0979070-mRNA-1:exon:5054;Parent=Msa0979070-mRNA-1 |
| chr6_4 | exon | 15401457 | 15401742 | 15401457 | ID=Msa0979070-mRNA-1:exon:5055;Parent=Msa0979070-mRNA-1 |
| chr6_4 | five_prime_UTR | 15396602 | 15396760 | 15396602 | ID=Msa0979070-mRNA-1:five_prime_utr;Parent=Msa0979070-mRNA-1 |
| chr6_4 | CDS | 15396761 | 15397040 | 15396761 | ID=Msa0979070-mRNA-1:cds;Parent=Msa0979070-mRNA-1 |
| chr6_4 | CDS | 15398346 | 15398409 | 15398346 | ID=Msa0979070-mRNA-1:cds;Parent=Msa0979070-mRNA-1 |
| chr6_4 | CDS | 15398540 | 15398607 | 15398540 | ID=Msa0979070-mRNA-1:cds;Parent=Msa0979070-mRNA-1 |
| chr6_4 | CDS | 15399159 | 15399248 | 15399159 | ID=Msa0979070-mRNA-1:cds;Parent=Msa0979070-mRNA-1 |
| chr6_4 | CDS | 15399330 | 15399460 | 15399330 | ID=Msa0979070-mRNA-1:cds;Parent=Msa0979070-mRNA-1 |
| chr6_4 | CDS | 15401230 | 15401346 | 15401230 | ID=Msa0979070-mRNA-1:cds;Parent=Msa0979070-mRNA-1 |
| chr6_4 | CDS | 15401457 | 15401474 | 15401457 | ID=Msa0979070-mRNA-1:cds;Parent=Msa0979070-mRNA-1 |
| chr6_4 | three_prime_UTR | 15401475 | 15401742 | 15401475 | ID=Msa0979070-mRNA-1:three_prime_utr;Parent=Msa0979070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
