Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942350 | sp|Q67Y69|WDL7_ARATH | 57.333 | 75 | 30 | 1 | 21 | 95 | 12 | 84 | 5.46e-16 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0361910 | Msa0942350 | 0.802292 | 6.011766e-49 | -8.615850e-47 |
| Msa0942350 | Msa1043080 | 0.828616 | 8.141267e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942350 | MtrunA17_Chr6g0458401 | 88.356 | 584 | 44 | 4 | 1 | 571 | 1 | 573 | 0.0 | 1008 |
| Msa0942350 | MtrunA17_Chr3g0123121 | 42.308 | 182 | 92 | 4 | 4 | 179 | 5 | 179 | 2.92e-32 | 132 |
| Msa0942350 | MtrunA17_Chr7g0228951 | 46.154 | 143 | 50 | 3 | 287 | 428 | 73 | 189 | 3.71e-24 | 101 |
| Msa0942350 | MtrunA17_Chr5g0414961 | 61.972 | 71 | 27 | 0 | 26 | 96 | 118 | 188 | 2.31e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942350 | AT3G27350.1 | 65.625 | 96 | 32 | 1 | 1 | 95 | 1 | 96 | 4.55e-36 | 136 |
| Msa0942350 | AT3G27350.2 | 65.625 | 96 | 32 | 1 | 1 | 95 | 1 | 96 | 2.50e-35 | 135 |
| Msa0942350 | AT3G01710.4 | 71.951 | 82 | 16 | 2 | 1 | 81 | 1 | 76 | 3.20e-31 | 124 |
| Msa0942350 | AT3G01710.2 | 71.951 | 82 | 16 | 2 | 1 | 81 | 1 | 76 | 8.08e-31 | 124 |
| Msa0942350 | AT3G01710.2 | 44.000 | 175 | 80 | 6 | 317 | 489 | 227 | 385 | 2.97e-29 | 120 |
| Msa0942350 | AT3G01710.1 | 71.951 | 82 | 16 | 2 | 1 | 81 | 1 | 76 | 9.90e-31 | 124 |
| Msa0942350 | AT3G01710.1 | 43.258 | 178 | 80 | 7 | 317 | 489 | 227 | 388 | 2.11e-27 | 114 |
| Msa0942350 | AT3G01710.3 | 71.951 | 82 | 16 | 2 | 1 | 81 | 1 | 76 | 1.48e-30 | 124 |
| Msa0942350 | AT3G01710.3 | 44.571 | 175 | 79 | 6 | 317 | 489 | 227 | 385 | 8.06e-30 | 122 |
| Msa0942350 | AT5G40700.3 | 63.415 | 82 | 29 | 1 | 1 | 81 | 1 | 82 | 3.48e-30 | 119 |
| Msa0942350 | AT5G40700.2 | 63.415 | 82 | 29 | 1 | 1 | 81 | 1 | 82 | 1.49e-29 | 119 |
| Msa0942350 | AT5G40700.1 | 63.415 | 82 | 29 | 1 | 1 | 81 | 1 | 82 | 1.57e-29 | 119 |
| Msa0942350 | AT3G26050.1 | 53.846 | 91 | 41 | 1 | 1 | 90 | 1 | 91 | 1.32e-25 | 111 |
| Msa0942350 | AT1G24160.1 | 35.185 | 216 | 99 | 9 | 25 | 225 | 30 | 219 | 8.31e-22 | 99.8 |
| Msa0942350 | AT1G24160.2 | 35.185 | 216 | 99 | 9 | 25 | 225 | 30 | 219 | 8.31e-22 | 99.8 |
| Msa0942350 | AT1G70100.5 | 41.818 | 110 | 60 | 1 | 13 | 118 | 8 | 117 | 1.58e-21 | 98.2 |
| Msa0942350 | AT1G70100.1 | 41.818 | 110 | 60 | 1 | 13 | 118 | 8 | 117 | 1.58e-21 | 98.2 |
| Msa0942350 | AT1G70100.2 | 41.818 | 110 | 60 | 1 | 13 | 118 | 8 | 117 | 1.58e-21 | 98.2 |
| Msa0942350 | AT1G70100.4 | 41.818 | 110 | 60 | 1 | 13 | 118 | 8 | 117 | 1.72e-21 | 98.2 |
| Msa0942350 | AT1G70100.3 | 42.202 | 109 | 59 | 1 | 14 | 118 | 9 | 117 | 1.96e-21 | 98.2 |
| Msa0942350 | AT1G70100.6 | 42.202 | 109 | 59 | 1 | 14 | 118 | 9 | 117 | 1.96e-21 | 98.2 |
| Msa0942350 | AT3G27350.3 | 73.214 | 56 | 15 | 0 | 40 | 95 | 1 | 56 | 2.94e-20 | 91.7 |
| Msa0942350 | AT1G70950.1 | 57.333 | 75 | 30 | 1 | 21 | 95 | 12 | 84 | 5.55e-17 | 84.3 |
| Msa0942350 | AT1G23060.1 | 70.588 | 51 | 15 | 0 | 33 | 83 | 22 | 72 | 1.49e-16 | 82.0 |
| Msa0942350 | AT1G23060.4 | 70.588 | 51 | 15 | 0 | 33 | 83 | 22 | 72 | 1.49e-16 | 82.0 |
Find 101 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTATTGCAGCAGGTTTC+TGG | 0.119202 | 6_3:-17008087 | Msa0942350:intron |
| GGTGTAAAATTTACTTTCTT+TGG | 0.156449 | 6_3:+17007853 | None:intergenic |
| AGTAGCAAAGTTATCTATTT+TGG | 0.187455 | 6_3:+17007933 | None:intergenic |
| ATTTGTAATTTCTACCAATT+TGG | 0.200931 | 6_3:+17005429 | None:intergenic |
| TTCAAGTTGATAAAGTTTAA+TGG | 0.204714 | 6_3:-17008009 | Msa0942350:CDS |
| TTCCTTTCCTTGTAAAATTC+AGG | 0.242565 | 6_3:+17005912 | None:intergenic |
| ATTCTTTGCAATGAAATTCT+TGG | 0.248860 | 6_3:+17005544 | None:intergenic |
| TTACTAATTGCAGGCTTCTA+AGG | 0.257175 | 6_3:-17007257 | Msa0942350:intron |
| TTCTGACTAAGCATTCATTT+TGG | 0.266269 | 6_3:-17005288 | Msa0942350:three_prime_UTR |
| TGGTTCCTATGCTGAATATT+TGG | 0.291791 | 6_3:+17005449 | None:intergenic |
| CACTCTTTCATACTGAGAAT+TGG | 0.293222 | 6_3:+17005614 | None:intergenic |
| ACCATACAGCCGGTCCTAAA+TGG | 0.300596 | 6_3:-17007037 | Msa0942350:CDS |
| CCAGAGAGCAAGCGCCATTT+AGG | 0.310606 | 6_3:+17007023 | None:intergenic |
| TAACATAGTACCTTCAATAT+TGG | 0.311571 | 6_3:+17008569 | None:intergenic |
| AATCTATTAAATTCTCTAAT+AGG | 0.315430 | 6_3:+17007832 | None:intergenic |
| TTCAATATTGGTGTCATGAT+TGG | 0.315639 | 6_3:+17008581 | None:intergenic |
| ATTGGTAGAAATTACAAATA+AGG | 0.320963 | 6_3:-17005425 | Msa0942350:exon |
| GATTACCTGATTGGAATCAT+TGG | 0.321887 | 6_3:+17010413 | None:intergenic |
| TCCAGTCATGACACCAATAT+TGG | 0.323466 | 6_3:-17008708 | Msa0942350:CDS |
| CTGAAAGGCGATGATATAAT+TGG | 0.323544 | 6_3:+17006434 | None:intergenic |
| GTGTCGTTTGTTAGATAGTT+TGG | 0.328730 | 6_3:-17005175 | Msa0942350:three_prime_UTR |
| CAAACAGGGTCAACGTAGTT+TGG | 0.332532 | 6_3:-17010533 | Msa0942350:five_prime_UTR |
| CCTAAATGGCGCTTGCTCTC+TGG | 0.336773 | 6_3:-17007023 | Msa0942350:CDS |
| TCATGATTTAGATTCAAATA+TGG | 0.345263 | 6_3:-17008855 | Msa0942350:CDS |
| CTTGGACAATCAATCTCATT+TGG | 0.346035 | 6_3:-17009181 | Msa0942350:CDS |
| TCTTATTTGCAGGAGAAAAC+AGG | 0.368548 | 6_3:-17005990 | Msa0942350:intron |
| TCCAATATTGGTGTCATGAC+TGG | 0.375481 | 6_3:+17008707 | None:intergenic |
| TGCCAAAGTTGCTATAGCTT+TGG | 0.378509 | 6_3:+17005345 | None:intergenic |
| ATTCCAGAAGCATAACAAAA+TGG | 0.379083 | 6_3:+17010438 | None:intergenic |
| TGGCATTGATCAAGAAGTTT+CGG | 0.381416 | 6_3:-17008067 | Msa0942350:CDS |
| CTCCATTAACAGAAAATAAC+AGG | 0.381810 | 6_3:-17007210 | Msa0942350:intron |
| TTCTTCTGTGCAACTGAACC+TGG | 0.381974 | 6_3:+17009070 | None:intergenic |
| ATTCAGCATAGGAACCAAAT+TGG | 0.393629 | 6_3:-17005443 | Msa0942350:CDS |
| ATGGTAGCAGTAAATTTAAC+AGG | 0.397658 | 6_3:+17007961 | None:intergenic |
| ATTAAACTTTATCAACTTGA+AGG | 0.399061 | 6_3:+17008011 | None:intergenic |
| CAAGCTATCCTTTGAAGCCT+TGG | 0.408531 | 6_3:+17007756 | None:intergenic |
| AAGAATTTCATTGCAAAGAA+TGG | 0.409760 | 6_3:-17005542 | Msa0942350:CDS |
| TAGCTTGGAAGCAAAAGCTT+TGG | 0.422621 | 6_3:+17005943 | None:intergenic |
| CACCAAAGCTATAGCAACTT+TGG | 0.428775 | 6_3:-17005347 | Msa0942350:three_prime_UTR |
| AGAAACTGAAATACCATAGT+TGG | 0.431426 | 6_3:+17007718 | None:intergenic |
| TGATGGTTGAATTGCAAAAG+AGG | 0.436861 | 6_3:-17008784 | Msa0942350:CDS |
| GCCATTTAGGACCGGCTGTA+TGG | 0.437996 | 6_3:+17007036 | None:intergenic |
| CTACTCCAATGAGCAACAAT+AGG | 0.440722 | 6_3:-17007915 | Msa0942350:CDS |
| AGTCACTAGCATGGGAGAAA+TGG | 0.441400 | 6_3:-17009144 | Msa0942350:CDS |
| GAAGGCCTATTGTTGCTCAT+TGG | 0.444492 | 6_3:+17007910 | None:intergenic |
| ATGAATGAAGATTACCTGAT+TGG | 0.445142 | 6_3:+17010404 | None:intergenic |
| TGCAAAGAATGGTCCTATCT+TGG | 0.446170 | 6_3:-17005531 | Msa0942350:CDS |
| AAATTTACTTTCTTTGGAGT+TGG | 0.446539 | 6_3:+17007859 | None:intergenic |
| AGTTGGTGCTTCTTCTTCCA+AGG | 0.449272 | 6_3:-17007773 | Msa0942350:CDS |
| AATTTCCAATGATTCCAATC+AGG | 0.452229 | 6_3:-17010418 | Msa0942350:intron |
| GGAGGATGATGTGCCAAGAT+AGG | 0.460995 | 6_3:+17005518 | None:intergenic |
| TCCTTGTAAAATTCAGGTAG+TGG | 0.461475 | 6_3:+17005918 | None:intergenic |
| TTCAGTGAAGGTCTGTTAAG+AGG | 0.463302 | 6_3:+17005578 | None:intergenic |
| TCAGCTTGAGGACAGAAGAA+AGG | 0.475932 | 6_3:-17006415 | Msa0942350:CDS |
| ATCAACTTGAAGGAAGAAAC+CGG | 0.484003 | 6_3:+17008021 | None:intergenic |
| AAAGTATGAAGTGGTTGTTA+AGG | 0.485920 | 6_3:-17008906 | Msa0942350:CDS |
| CAGCTTGAGGACAGAAGAAA+GGG | 0.487619 | 6_3:-17006414 | Msa0942350:CDS |
| TTCTTCTTCCAAGGCTTCAA+AGG | 0.488153 | 6_3:-17007764 | Msa0942350:CDS |
| GACAATCAATCTCATTTGGA+AGG | 0.493636 | 6_3:-17009177 | Msa0942350:CDS |
| TCTAACAAACGACACATTTG+AGG | 0.494881 | 6_3:+17005183 | None:intergenic |
| ATCAAATATTGAAACAAGAA+AGG | 0.496957 | 6_3:-17005886 | Msa0942350:intron |
| AATCATGACACCAATATTGA+AGG | 0.498827 | 6_3:-17008579 | Msa0942350:intron |
| TATCATCGCCTTTCAGCTTG+AGG | 0.505296 | 6_3:-17006427 | Msa0942350:CDS |
| AGGTGTAGTAGTGGTGAACT+TGG | 0.518451 | 6_3:+17007981 | None:intergenic |
| ATTCAGGTAGTGGTCTAGCT+TGG | 0.521457 | 6_3:+17005928 | None:intergenic |
| AGATTTGAAAATACAAGAGT+TGG | 0.522202 | 6_3:-17007790 | Msa0942350:CDS |
| AAGGGCTGCAAGAAGAAAGA+AGG | 0.536275 | 6_3:-17006396 | Msa0942350:intron |
| CGCGAAGCAGACGAATCAAT+AGG | 0.537351 | 6_3:+17007062 | None:intergenic |
| CTAACAAACGACACATTTGA+GGG | 0.542955 | 6_3:+17005184 | None:intergenic |
| ATCTTCATTGAATTTGAAGT+CGG | 0.543789 | 6_3:+17005497 | None:intergenic |
| TGTAGTAGTGGTGAACTTGG+AGG | 0.544604 | 6_3:+17007984 | None:intergenic |
| CATCATGAATCACTTAATGA+AGG | 0.551374 | 6_3:-17005644 | Msa0942350:CDS |
| TTCATTGAATTTGAAGTCGG+AGG | 0.553336 | 6_3:+17005500 | None:intergenic |
| AATATTGGTGTCATGATTGG+AGG | 0.559272 | 6_3:+17008584 | None:intergenic |
| AACAATACAAATCATGCACT+TGG | 0.563437 | 6_3:-17009199 | Msa0942350:CDS |
| TCTTCTGTCCTCAAGCTGAA+AGG | 0.565810 | 6_3:+17006419 | None:intergenic |
| GAAAAGTTCAAAGTATGAAG+TGG | 0.570558 | 6_3:-17008915 | Msa0942350:CDS |
| TTTCGGCTTCTTCGACGTAA+CGG | 0.577418 | 6_3:+17009104 | None:intergenic |
| AGAGGGTGGAAATAGACAAA+GGG | 0.579320 | 6_3:+17005313 | None:intergenic |
| GGAAGAACAAGATGATGCAA+AGG | 0.580859 | 6_3:-17008885 | Msa0942350:CDS |
| CTTATTTGCAGGAGAAAACA+GGG | 0.582152 | 6_3:-17005989 | Msa0942350:intron |
| AACTAGCAAGAAGGAACCGC+CGG | 0.582275 | 6_3:-17008040 | Msa0942350:CDS |
| GAGCAAGCGCCATTTAGGAC+CGG | 0.582652 | 6_3:+17007028 | None:intergenic |
| CATGTCAGAGTCACTAGCAT+GGG | 0.586091 | 6_3:-17009152 | Msa0942350:CDS |
| TTCGGCATCAACTAGCAAGA+AGG | 0.596914 | 6_3:-17008049 | Msa0942350:CDS |
| TCTGCATTGCTTAATGCAGA+AGG | 0.600195 | 6_3:+17007892 | None:intergenic |
| CATCACCAAATATTCAGCAT+AGG | 0.606535 | 6_3:-17005454 | Msa0942350:CDS |
| AAATTTAACAGGTGTAGTAG+TGG | 0.614134 | 6_3:+17007972 | None:intergenic |
| GATTGACTGCATCAGTGATG+AGG | 0.616501 | 6_3:-17007813 | Msa0942350:CDS |
| GCTTCGCGTAACCATACAGC+CGG | 0.618836 | 6_3:-17007047 | Msa0942350:CDS |
| GCCGAAAGGTATTCAAAACC+AGG | 0.618947 | 6_3:-17009088 | Msa0942350:CDS |
| AAGAGGGTGGAAATAGACAA+AGG | 0.624115 | 6_3:+17005312 | None:intergenic |
| TTTGGTGCCTAAGTTAAATG+TGG | 0.627852 | 6_3:+17005363 | None:intergenic |
| TCATGTCAGAGTCACTAGCA+TGG | 0.633171 | 6_3:-17009153 | Msa0942350:CDS |
| CAAATAAGGACTATGTTGAG+AGG | 0.638603 | 6_3:-17005411 | Msa0942350:exon |
| AGCTGTACCACATTTAACTT+AGG | 0.640783 | 6_3:-17005370 | Msa0942350:three_prime_UTR |
| GCTTCACAAAGCAATGTCGA+TGG | 0.654817 | 6_3:-17008971 | Msa0942350:CDS |
| GTTACGTCGAAGAAGCCGAA+AGG | 0.665024 | 6_3:-17009102 | Msa0942350:CDS |
| AATATTGGTGTCATGACTGG+AGG | 0.688360 | 6_3:+17008710 | None:intergenic |
| AGTGATTCATGATGTGTCTG+CGG | 0.713194 | 6_3:+17005653 | None:intergenic |
| AACTTGAAGGAAGAAACCGG+CGG | 0.806464 | 6_3:+17008024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAGTTTTCATTATTT+TGG | - | chr6_3:17005327-17005346 | Msa0942350:three_prime_UTR | 10.0% |
| !!! | AAATAAATTGTGATTTATTT+TGG | + | chr6_3:17005364-17005383 | None:intergenic | 10.0% |
| !! | AGAATTTCTATTATTGAATT+TGG | - | chr6_3:17005256-17005275 | Msa0942350:three_prime_UTR | 15.0% |
| !! | TCATGAAAAATTAACTAAAA+GGG | + | chr6_3:17005561-17005580 | None:intergenic | 15.0% |
| !! | TTCATGAAAAATTAACTAAA+AGG | + | chr6_3:17005562-17005581 | None:intergenic | 15.0% |
| !!! | TATGTAAATTGATTTTTGTT+TGG | - | chr6_3:17006085-17006104 | Msa0942350:intron | 15.0% |
| !!! | TACTATGTTAATTTATTTTG+AGG | - | chr6_3:17007059-17007078 | Msa0942350:CDS | 15.0% |
| !! | AATCTATTAAATTCTCTAAT+AGG | + | chr6_3:17007786-17007805 | None:intergenic | 15.0% |
| !!! | TTTAGAGTCTAAAAATATTT+TGG | - | chr6_3:17008018-17008037 | Msa0942350:CDS | 15.0% |
| !!! | TCTAAAAATATTTTGGATTT+TGG | - | chr6_3:17008025-17008044 | Msa0942350:CDS | 15.0% |
| !!! | TATGTATTTTGTAAAATCAT+AGG | - | chr6_3:17008521-17008540 | Msa0942350:intron | 15.0% |
| !! | AATTGAAACTTATTAGATTA+AGG | - | chr6_3:17008732-17008751 | Msa0942350:CDS | 15.0% |
| !! | TTTATGATGTTTAATAACAT+TGG | - | chr6_3:17008869-17008888 | Msa0942350:CDS | 15.0% |
| !! | TTCAATTATATAGTATTACA+TGG | - | chr6_3:17009865-17009884 | Msa0942350:intron | 15.0% |
| !!! | TTACCAAATTTTTACTATTA+TGG | + | chr6_3:17009913-17009932 | None:intergenic | 15.0% |
| !!! | AGTGAATTATTTTAGTGTAT+AGG | + | chr6_3:17005285-17005304 | None:intergenic | 20.0% |
| !!! | AAAAATTCTGAAAACATGTA+GGG | + | chr6_3:17005399-17005418 | None:intergenic | 20.0% |
| !!! | AAAAAATTCTGAAAACATGT+AGG | + | chr6_3:17005400-17005419 | None:intergenic | 20.0% |
| !!! | CATGTTTTCAGAATTTTTTT+AGG | - | chr6_3:17005401-17005420 | Msa0942350:three_prime_UTR | 20.0% |
| !! | TATGAAACAATATATGAACA+CGG | - | chr6_3:17005455-17005474 | Msa0942350:CDS | 20.0% |
| !!! | TTGCCATAATTTTCAAAATA+TGG | - | chr6_3:17005532-17005551 | Msa0942350:CDS | 20.0% |
| !!! | TGCCATAATTTTCAAAATAT+GGG | - | chr6_3:17005533-17005552 | Msa0942350:CDS | 20.0% |
| !! | CATGAAAAATTAACTAAAAG+GGG | + | chr6_3:17005560-17005579 | None:intergenic | 20.0% |
| !! | TGATTAGATTATGTTGTAAA+CGG | - | chr6_3:17005739-17005758 | Msa0942350:intron | 20.0% |
| !! | AACTATACATGTTTGAATAA+TGG | + | chr6_3:17005803-17005822 | None:intergenic | 20.0% |
| !!! | TAAACCTTAAGATTTTGTTT+TGG | - | chr6_3:17006302-17006321 | Msa0942350:intron | 20.0% |
| !!! | AAACCTTAAGATTTTGTTTT+GGG | - | chr6_3:17006303-17006322 | Msa0942350:intron | 20.0% |
| !! | TCATGATTTAGATTCAAATA+TGG | - | chr6_3:17006760-17006779 | Msa0942350:intron | 20.0% |
| !!! | AAAGTAACAATGTTGTTTTA+AGG | - | chr6_3:17006801-17006820 | Msa0942350:intron | 20.0% |
| !!! | TTGTTTTAAGGAATTCATTA+AGG | - | chr6_3:17006939-17006958 | Msa0942350:intron | 20.0% |
| !!! | TGTTTTAAGGAATTCATTAA+GGG | - | chr6_3:17006940-17006959 | Msa0942350:intron | 20.0% |
| !! | ATCGAAACAAAACAAAATAA+GGG | + | chr6_3:17007114-17007133 | None:intergenic | 20.0% |
| !! | AATCGAAACAAAACAAAATA+AGG | + | chr6_3:17007115-17007134 | None:intergenic | 20.0% |
| !! | AATCGTGAATTTAAAAATGA+AGG | + | chr6_3:17007144-17007163 | None:intergenic | 20.0% |
| !!! | CATTTTTAAATTCACGATTT+CGG | - | chr6_3:17007145-17007164 | Msa0942350:intron | 20.0% |
| !!! | AAAAAAGACAAATACAGTTT+TGG | + | chr6_3:17007477-17007496 | None:intergenic | 20.0% |
| !!! | ACTGTATTTGTCTTTTTTTA+AGG | - | chr6_3:17007479-17007498 | Msa0942350:intron | 20.0% |
| !! | ATTAAACTTTATCAACTTGA+AGG | + | chr6_3:17007607-17007626 | None:intergenic | 20.0% |
| !!! | TTCAAGTTGATAAAGTTTAA+TGG | - | chr6_3:17007606-17007625 | Msa0942350:intron | 20.0% |
| !! | CATAAGATACTAATAGTATA+AGG | + | chr6_3:17007943-17007962 | None:intergenic | 20.0% |
| !!! | TAAGATTTGATTCGAAAAAT+AGG | - | chr6_3:17008226-17008245 | Msa0942350:intron | 20.0% |
| !! | CAATATGGTATGAATTAAAA+AGG | + | chr6_3:17008707-17008726 | None:intergenic | 20.0% |
| !!! | CTTTTTAATTCATACCATAT+TGG | - | chr6_3:17008705-17008724 | Msa0942350:CDS | 20.0% |
| !!! | CATCATATTAATAGCTTTTT+TGG | - | chr6_3:17008797-17008816 | Msa0942350:CDS | 20.0% |
| !!! | TTTTCATCATTTTTAGAAAC+TGG | - | chr6_3:17009321-17009340 | Msa0942350:intron | 20.0% |
| !! | ATCAAATATTGAAACAAGAA+AGG | - | chr6_3:17009729-17009748 | Msa0942350:intron | 20.0% |
| !! | TGTCCATAATAGTAAAAATT+TGG | - | chr6_3:17009907-17009926 | Msa0942350:intron | 20.0% |
| !! | ATTTGTAATTTCTACCAATT+TGG | + | chr6_3:17010189-17010208 | None:intergenic | 20.0% |
| !! | ATTGGTAGAAATTACAAATA+AGG | - | chr6_3:17010190-17010209 | Msa0942350:intron | 20.0% |
| !!! | GTTTTTTGGTAGTAATTTTA+TGG | + | chr6_3:17010499-17010518 | None:intergenic | 20.0% |
| ! | AGTGAAAAAACAAAACATCA+TGG | - | chr6_3:17005131-17005150 | Msa0942350:three_prime_UTR | 25.0% |
| ! | GTGAAAAAACAAAACATCAT+GGG | - | chr6_3:17005132-17005151 | Msa0942350:three_prime_UTR | 25.0% |
| !!! | GTCCCATATTTTGAAAATTA+TGG | + | chr6_3:17005538-17005557 | None:intergenic | 25.0% |
| ! | TTTATAGATGATTGATGAGT+TGG | - | chr6_3:17005642-17005661 | Msa0942350:CDS | 25.0% |
| ! | TTATAGATGATTGATGAGTT+GGG | - | chr6_3:17005643-17005662 | Msa0942350:CDS | 25.0% |
| ! | CTCAATAGTTCACATAAAAT+TGG | - | chr6_3:17006001-17006020 | Msa0942350:intron | 25.0% |
| !!! | TTCACATAAAATTGGTTTTG+TGG | - | chr6_3:17006009-17006028 | Msa0942350:intron | 25.0% |
| ! | TGAGACTAAATCAATTCTAT+AGG | - | chr6_3:17006125-17006144 | Msa0942350:intron | 25.0% |
| !! | TGATTCTAAAAGCTAGAATT+TGG | + | chr6_3:17006159-17006178 | None:intergenic | 25.0% |
| ! | ATATGATACAAGTGTATGTT+TGG | + | chr6_3:17006260-17006279 | None:intergenic | 25.0% |
| !!! | GTTTCATAGTTTTTTCAATG+TGG | + | chr6_3:17006381-17006400 | None:intergenic | 25.0% |
| !!! | TGTTTTAAGGAATTCAATGA+TGG | - | chr6_3:17006814-17006833 | Msa0942350:intron | 25.0% |
| ! | TAACATAGTACCTTCAATAT+TGG | + | chr6_3:17007049-17007068 | None:intergenic | 25.0% |
| !!! | GTTATCTATTTTGGAAGAAA+TGG | + | chr6_3:17007676-17007695 | None:intergenic | 25.0% |
| !! | AGTAGCAAAGTTATCTATTT+TGG | + | chr6_3:17007685-17007704 | None:intergenic | 25.0% |
| !!! | AAATTTACTTTCTTTGGAGT+TGG | + | chr6_3:17007759-17007778 | None:intergenic | 25.0% |
| ! | GGTGTAAAATTTACTTTCTT+TGG | + | chr6_3:17007765-17007784 | None:intergenic | 25.0% |
| ! | AGATTTGAAAATACAAGAGT+TGG | - | chr6_3:17007825-17007844 | Msa0942350:CDS | 25.0% |
| !! | TCACTATGATGATTCATTTT+TGG | - | chr6_3:17008082-17008101 | Msa0942350:intron | 25.0% |
| ! | TTCAAATGACAAAAGAAAAG+TGG | + | chr6_3:17008126-17008145 | None:intergenic | 25.0% |
| !!! | TACCTGTTATTTTCTGTTAA+TGG | + | chr6_3:17008410-17008429 | None:intergenic | 25.0% |
| ! | TTAGTAACTTCGTAGAAATT+AGG | + | chr6_3:17008433-17008452 | None:intergenic | 25.0% |
| ! | AAATACATAAACACAATGTC+AGG | + | chr6_3:17008510-17008529 | None:intergenic | 25.0% |
| ! | AGTTTCAATTCTTTCCAATA+TGG | + | chr6_3:17008722-17008741 | None:intergenic | 25.0% |
| !!! | ATAACTGTTACTTTACTTGA+AGG | - | chr6_3:17009093-17009112 | Msa0942350:CDS | 25.0% |
| !!! | TAACTGTTACTTTACTTGAA+GGG | - | chr6_3:17009094-17009113 | Msa0942350:CDS | 25.0% |
| ! | TAAACAGAAGAGAAACATAA+GGG | + | chr6_3:17009256-17009275 | None:intergenic | 25.0% |
| ! | TTAAACAGAAGAGAAACATA+AGG | + | chr6_3:17009257-17009276 | None:intergenic | 25.0% |
| ! | CTTCTGTTTAATTGATTATG+CGG | - | chr6_3:17009266-17009285 | Msa0942350:intron | 25.0% |
| !! | TATATAATGCTCTTATTTGC+AGG | - | chr6_3:17009615-17009634 | Msa0942350:intron | 25.0% |
| !!! | GGTAATCTTGTTTTTCAAAT+TGG | - | chr6_3:17009750-17009769 | Msa0942350:intron | 25.0% |
| !!! | GTTTTTCAAATTGGTAAATG+AGG | - | chr6_3:17009759-17009778 | Msa0942350:intron | 25.0% |
| ! | TTGAAAATAACTGAATGTGT+CGG | + | chr6_3:17009850-17009869 | None:intergenic | 25.0% |
| ! | ATTCTTTGCAATGAAATTCT+TGG | + | chr6_3:17010074-17010093 | None:intergenic | 25.0% |
| ! | AAGAATTTCATTGCAAAGAA+TGG | - | chr6_3:17010073-17010092 | Msa0942350:intron | 25.0% |
| !! | ATCTTCATTGAATTTGAAGT+CGG | + | chr6_3:17010121-17010140 | None:intergenic | 25.0% |
| ! | ATTCCAGAAGCATAACAAAA+TGG | + | chr6_3:17005180-17005199 | None:intergenic | 30.0% |
| AATTTCCAATGATTCCAATC+AGG | - | chr6_3:17005197-17005216 | Msa0942350:three_prime_UTR | 30.0% | |
| ATGAATGAAGATTACCTGAT+TGG | + | chr6_3:17005214-17005233 | None:intergenic | 30.0% | |
| ACTTCACTTGTATCATGTAA+TGG | + | chr6_3:17005675-17005694 | None:intergenic | 30.0% | |
| GAATGATGCAAGATTGATTA+TGG | - | chr6_3:17006048-17006067 | Msa0942350:intron | 30.0% | |
| AAATTTGACTCATCGAAAAG+TGG | - | chr6_3:17006232-17006251 | Msa0942350:intron | 30.0% | |
| ACTCCCAAAACAAAATCTTA+AGG | + | chr6_3:17006309-17006328 | None:intergenic | 30.0% | |
| !!! | GATTTTGTTTTGGGAGTATA+TGG | - | chr6_3:17006312-17006331 | Msa0942350:intron | 30.0% |
| AACAATACAAATCATGCACT+TGG | - | chr6_3:17006416-17006435 | Msa0942350:CDS | 30.0% | |
| GAAAAGTTCAAAGTATGAAG+TGG | - | chr6_3:17006700-17006719 | Msa0942350:intron | 30.0% | |
| AAAGTATGAAGTGGTTGTTA+AGG | - | chr6_3:17006709-17006728 | Msa0942350:intron | 30.0% | |
| !!! | ACAACTGCTTTTTCCAATAT+TGG | + | chr6_3:17006923-17006942 | None:intergenic | 30.0% |
| !! | TGGAAAAAGCAGTTGTTTTA+AGG | - | chr6_3:17006927-17006946 | Msa0942350:intron | 30.0% |
| !! | TTCAATATTGGTGTCATGAT+TGG | + | chr6_3:17007037-17007056 | None:intergenic | 30.0% |
| AATCATGACACCAATATTGA+AGG | - | chr6_3:17007036-17007055 | Msa0942350:CDS | 30.0% | |
| !! | ATACTTATGTGGCTTTAGAT+TGG | - | chr6_3:17007245-17007264 | Msa0942350:CDS | 30.0% |
| !!! | TTTTTTTAAGGTCATAGTCG+TGG | - | chr6_3:17007491-17007510 | Msa0942350:intron | 30.0% |
| AAATTTAACAGGTGTAGTAG+TGG | + | chr6_3:17007646-17007665 | None:intergenic | 30.0% | |
| ATGGTAGCAGTAAATTTAAC+AGG | + | chr6_3:17007657-17007676 | None:intergenic | 30.0% | |
| AGAAACTGAAATACCATAGT+TGG | + | chr6_3:17007900-17007919 | None:intergenic | 30.0% | |
| ATGAATCATCATAGTGAACA+AGG | + | chr6_3:17008079-17008098 | None:intergenic | 30.0% | |
| !!! | GAGTCATTTTTACTAATTGC+AGG | - | chr6_3:17008349-17008368 | Msa0942350:intron | 30.0% |
| CTCCATTAACAGAAAATAAC+AGG | - | chr6_3:17008405-17008424 | Msa0942350:intron | 30.0% | |
| ACACACGAATTACTCAATAT+TGG | + | chr6_3:17008678-17008697 | None:intergenic | 30.0% | |
| GAAACTTATTAGATTAAGGC+TGG | - | chr6_3:17008736-17008755 | Msa0942350:CDS | 30.0% | |
| GAAACACATATTTGTACACT+TGG | + | chr6_3:17008772-17008791 | None:intergenic | 30.0% | |
| ! | TAATAACATTGGCTAAAACG+TGG | - | chr6_3:17008880-17008899 | Msa0942350:CDS | 30.0% |
| !! | AAAACAGTTCAAAGAGTGTT+TGG | - | chr6_3:17008931-17008950 | Msa0942350:CDS | 30.0% |
| ACAGTTATTGTGTGTTTAAG+TGG | + | chr6_3:17009072-17009091 | None:intergenic | 30.0% | |
| !! | AACTGTTACTTTACTTGAAG+GGG | - | chr6_3:17009095-17009114 | Msa0942350:CDS | 30.0% |
| ! | CAAACCTTGAATTTTTCATG+TGG | + | chr6_3:17009388-17009407 | None:intergenic | 30.0% |
| ! | TACCTGAATTTTACAAGGAA+AGG | - | chr6_3:17009701-17009720 | Msa0942350:intron | 30.0% |
| TTCCTTTCCTTGTAAAATTC+AGG | + | chr6_3:17009706-17009725 | None:intergenic | 30.0% | |
| !!! | TCATCTTCTGTTTGTTTTGT+AGG | - | chr6_3:17009937-17009956 | Msa0942350:intron | 30.0% |
| CATCATGAATCACTTAATGA+AGG | - | chr6_3:17009971-17009990 | Msa0942350:intron | 30.0% | |
| AATGCTTAGTCAGAAAAAGA+GGG | + | chr6_3:17010322-17010341 | None:intergenic | 30.0% | |
| ! | TTCTGACTAAGCATTCATTT+TGG | - | chr6_3:17010327-17010346 | Msa0942350:intron | 30.0% |
| TACCAAAAAACACACACTTA+GGG | - | chr6_3:17010508-17010527 | Msa0942350:five_prime_UTR | 30.0% | |
| ! | AACGTAGTTTGGATCTTTTG+AGG | - | chr6_3:17005093-17005112 | Msa0942350:three_prime_UTR | 35.0% |
| !!! | TTTTGAGGTTTCAACGTTGT+TGG | - | chr6_3:17005108-17005127 | Msa0942350:three_prime_UTR | 35.0% |
| !! | CAACCATTTTGTTATGCTTC+TGG | - | chr6_3:17005174-17005193 | Msa0942350:three_prime_UTR | 35.0% |
| GATTACCTGATTGGAATCAT+TGG | + | chr6_3:17005205-17005224 | None:intergenic | 35.0% | |
| TCAATGAGTGTCTTGTATTC+AGG | + | chr6_3:17005938-17005957 | None:intergenic | 35.0% | |
| ! | ACAAGACACTCATTGATTGT+CGG | - | chr6_3:17005942-17005961 | Msa0942350:CDS | 35.0% |
| CTTGGACAATCAATCTCATT+TGG | - | chr6_3:17006434-17006453 | Msa0942350:CDS | 35.0% | |
| GACAATCAATCTCATTTGGA+AGG | - | chr6_3:17006438-17006457 | Msa0942350:CDS | 35.0% | |
| !!! | ACCTGGTTTTGAATACCTTT+CGG | + | chr6_3:17006531-17006550 | None:intergenic | 35.0% |
| TGATGGTTGAATTGCAAAAG+AGG | - | chr6_3:17006831-17006850 | Msa0942350:intron | 35.0% | |
| !! | AATATTGGTGTCATGATTGG+AGG | + | chr6_3:17007034-17007053 | None:intergenic | 35.0% |
| TTTCCTAGTGTATGCATTTG+AGG | - | chr6_3:17007195-17007214 | Msa0942350:intron | 35.0% | |
| !! | GATGGTCAGTATTTCAAGTT+CGG | + | chr6_3:17007381-17007400 | None:intergenic | 35.0% |
| !! | TGGCATTGATCAAGAAGTTT+CGG | - | chr6_3:17007548-17007567 | Msa0942350:intron | 35.0% |
| ATCAACTTGAAGGAAGAAAC+CGG | + | chr6_3:17007597-17007616 | None:intergenic | 35.0% | |
| ! | TCCTCTAAAAACTCCAACTA+TGG | - | chr6_3:17007884-17007903 | Msa0942350:CDS | 35.0% |
| !! | ACCATAGTTGGAGTTTTTAG+AGG | + | chr6_3:17007888-17007907 | None:intergenic | 35.0% |
| TGTTTACAGCAATTGCAACT+TGG | + | chr6_3:17008319-17008338 | None:intergenic | 35.0% | |
| TTACTAATTGCAGGCTTCTA+AGG | - | chr6_3:17008358-17008377 | Msa0942350:intron | 35.0% | |
| TAGAGAAAACTTGACACTGA+AGG | + | chr6_3:17008476-17008495 | None:intergenic | 35.0% | |
| ACACATATTTGTACACTTGG+TGG | + | chr6_3:17008769-17008788 | None:intergenic | 35.0% | |
| !!! | CTTGAAGGGGCTTTATTTTT+CGG | - | chr6_3:17009108-17009127 | Msa0942350:CDS | 35.0% |
| CTGAAAGGCGATGATATAAT+TGG | + | chr6_3:17009184-17009203 | None:intergenic | 35.0% | |
| CTTGTTAAGTTACTCCTACA+AGG | - | chr6_3:17009460-17009479 | Msa0942350:intron | 35.0% | |
| !! | AGTCTCTAAAATCACCTTGT+AGG | + | chr6_3:17009477-17009496 | None:intergenic | 35.0% |
| TTACTGAAATCACCAGACTA+AGG | - | chr6_3:17009514-17009533 | Msa0942350:intron | 35.0% | |
| ACCAGACTAAGGACTAAATA+TGG | - | chr6_3:17009525-17009544 | Msa0942350:intron | 35.0% | |
| TCCATATTTAGTCCTTAGTC+TGG | + | chr6_3:17009529-17009548 | None:intergenic | 35.0% | |
| ! | TCTTATTTGCAGGAGAAAAC+AGG | - | chr6_3:17009625-17009644 | Msa0942350:intron | 35.0% |
| CTTATTTGCAGGAGAAAACA+GGG | - | chr6_3:17009626-17009645 | Msa0942350:intron | 35.0% | |
| ! | ACCACTACCTGAATTTTACA+AGG | - | chr6_3:17009696-17009715 | Msa0942350:intron | 35.0% |
| TCCTTGTAAAATTCAGGTAG+TGG | + | chr6_3:17009700-17009719 | None:intergenic | 35.0% | |
| CACTCTTTCATACTGAGAAT+TGG | + | chr6_3:17010004-17010023 | None:intergenic | 35.0% | |
| AGACCTTCACTGAAAAACAA+TGG | - | chr6_3:17010046-17010065 | Msa0942350:intron | 35.0% | |
| ! | TTCATTGAATTTGAAGTCGG+AGG | + | chr6_3:17010118-17010137 | None:intergenic | 35.0% |
| CATCACCAAATATTCAGCAT+AGG | - | chr6_3:17010161-17010180 | Msa0942350:intron | 35.0% | |
| TGGTTCCTATGCTGAATATT+TGG | + | chr6_3:17010169-17010188 | None:intergenic | 35.0% | |
| ATTCAGCATAGGAACCAAAT+TGG | - | chr6_3:17010172-17010191 | Msa0942350:intron | 35.0% | |
| CAAATAAGGACTATGTTGAG+AGG | - | chr6_3:17010204-17010223 | Msa0942350:intron | 35.0% | |
| ! | AGCTGTACCACATTTAACTT+AGG | - | chr6_3:17010245-17010264 | Msa0942350:intron | 35.0% |
| !! | TTTGGTGCCTAAGTTAAATG+TGG | + | chr6_3:17010255-17010274 | None:intergenic | 35.0% |
| GAATGCTTAGTCAGAAAAAG+AGG | + | chr6_3:17010323-17010342 | None:intergenic | 35.0% | |
| !! | ACTAAGCATTCATTTTGGTG+TGG | - | chr6_3:17010332-17010351 | Msa0942350:intron | 35.0% |
| CTAACAAACGACACATTTGA+GGG | + | chr6_3:17010434-17010453 | None:intergenic | 35.0% | |
| TCTAACAAACGACACATTTG+AGG | + | chr6_3:17010435-17010454 | None:intergenic | 35.0% | |
| !! | GTGTCGTTTGTTAGATAGTT+TGG | - | chr6_3:17010440-17010459 | Msa0942350:CDS | 35.0% |
| CTACCAAAAAACACACACTT+AGG | - | chr6_3:17010507-17010526 | Msa0942350:five_prime_UTR | 35.0% | |
| !!! | ATCCCTAAGTGTGTGTTTTT+TGG | + | chr6_3:17010513-17010532 | None:intergenic | 35.0% |
| GGAAGAACAAGATGATGCAA+AGG | - | chr6_3:17006730-17006749 | Msa0942350:intron | 40.0% | |
| !! | AATATTGGTGTCATGACTGG+AGG | + | chr6_3:17006908-17006927 | None:intergenic | 40.0% |
| TCCAGTCATGACACCAATAT+TGG | - | chr6_3:17006907-17006926 | Msa0942350:intron | 40.0% | |
| !! | TCCAATATTGGTGTCATGAC+TGG | + | chr6_3:17006911-17006930 | None:intergenic | 40.0% |
| GACACACCTTTAGATAACTG+TGG | + | chr6_3:17007173-17007192 | None:intergenic | 40.0% | |
| CAACCTCAAATGCATACACT+AGG | + | chr6_3:17007201-17007220 | None:intergenic | 40.0% | |
| ! | CCACATAAGTATGTCGCTTA+CGG | + | chr6_3:17007237-17007256 | None:intergenic | 40.0% |
| GTCATTGGACTAAGATCAGA+TGG | + | chr6_3:17007399-17007418 | None:intergenic | 40.0% | |
| CATTCACACAGTCAACACAT+CGG | + | chr6_3:17007424-17007443 | None:intergenic | 40.0% | |
| ATGTTGGTACTTATTGCAGC+AGG | - | chr6_3:17007521-17007540 | Msa0942350:intron | 40.0% | |
| TACTTATTGCAGCAGGTTTC+TGG | - | chr6_3:17007528-17007547 | Msa0942350:intron | 40.0% | |
| CTACTCCAATGAGCAACAAT+AGG | - | chr6_3:17007700-17007719 | Msa0942350:intron | 40.0% | |
| TCTGCATTGCTTAATGCAGA+AGG | + | chr6_3:17007726-17007745 | None:intergenic | 40.0% | |
| TTCTTCTTCCAAGGCTTCAA+AGG | - | chr6_3:17007851-17007870 | Msa0942350:CDS | 40.0% | |
| ! | CAGTCCTTCAACTTCAGTTT+TGG | - | chr6_3:17008285-17008304 | Msa0942350:intron | 40.0% |
| CAGTCCAAAACTGAAGTTGA+AGG | + | chr6_3:17008292-17008311 | None:intergenic | 40.0% | |
| !! | CATTGGCTAAAACGTGGTTT+TGG | - | chr6_3:17008886-17008905 | Msa0942350:CDS | 40.0% |
| GCAGCCACATGAAAAATTCA+AGG | - | chr6_3:17009381-17009400 | Msa0942350:intron | 40.0% | |
| TAGCTTGGAAGCAAAAGCTT+TGG | + | chr6_3:17009675-17009694 | None:intergenic | 40.0% | |
| GTGGTTCAAGTACATAGACA+TGG | + | chr6_3:17009800-17009819 | None:intergenic | 40.0% | |
| AGTGATTCATGATGTGTCTG+CGG | + | chr6_3:17009965-17009984 | None:intergenic | 40.0% | |
| TTCAGTGAAGGTCTGTTAAG+AGG | + | chr6_3:17010040-17010059 | None:intergenic | 40.0% | |
| TGCAAAGAATGGTCCTATCT+TGG | - | chr6_3:17010084-17010103 | Msa0942350:intron | 40.0% | |
| CACCAAAGCTATAGCAACTT+TGG | - | chr6_3:17010268-17010287 | Msa0942350:intron | 40.0% | |
| TGCCAAAGTTGCTATAGCTT+TGG | + | chr6_3:17010273-17010292 | None:intergenic | 40.0% | |
| AGAGGGTGGAAATAGACAAA+GGG | + | chr6_3:17010305-17010324 | None:intergenic | 40.0% | |
| AAGAGGGTGGAAATAGACAA+AGG | + | chr6_3:17010306-17010325 | None:intergenic | 40.0% | |
| CAAACAGGGTCAACGTAGTT+TGG | - | chr6_3:17005082-17005101 | Msa0942350:three_prime_UTR | 45.0% | |
| TCATGTCAGAGTCACTAGCA+TGG | - | chr6_3:17006462-17006481 | Msa0942350:intron | 45.0% | |
| CATGTCAGAGTCACTAGCAT+GGG | - | chr6_3:17006463-17006482 | Msa0942350:intron | 45.0% | |
| AGTCACTAGCATGGGAGAAA+TGG | - | chr6_3:17006471-17006490 | Msa0942350:intron | 45.0% | |
| TTTCGGCTTCTTCGACGTAA+CGG | + | chr6_3:17006514-17006533 | None:intergenic | 45.0% | |
| !! | GCCGAAAGGTATTCAAAACC+AGG | - | chr6_3:17006527-17006546 | Msa0942350:intron | 45.0% |
| TTCTTCTGTGCAACTGAACC+TGG | + | chr6_3:17006548-17006567 | None:intergenic | 45.0% | |
| GCTTCACAAAGCAATGTCGA+TGG | - | chr6_3:17006644-17006663 | Msa0942350:intron | 45.0% | |
| !! | TCGGTGCCACAGTTATCTAA+AGG | - | chr6_3:17007164-17007183 | Msa0942350:intron | 45.0% |
| CCGTAAGCGACATACTTATG+TGG | - | chr6_3:17007234-17007253 | Msa0942350:CDS | 45.0% | |
| !! | GTGTTGACTGTGTGAATGTG+TGG | - | chr6_3:17007426-17007445 | Msa0942350:intron | 45.0% |
| GTCTGTGACGACAGCATATA+AGG | - | chr6_3:17007450-17007469 | Msa0942350:intron | 45.0% | |
| TAGTCGTGGCACTAACATGT+TGG | - | chr6_3:17007505-17007524 | Msa0942350:intron | 45.0% | |
| TTCGGCATCAACTAGCAAGA+AGG | - | chr6_3:17007566-17007585 | Msa0942350:intron | 45.0% | |
| AACTTGAAGGAAGAAACCGG+CGG | + | chr6_3:17007594-17007613 | None:intergenic | 45.0% | |
| TGTAGTAGTGGTGAACTTGG+AGG | + | chr6_3:17007634-17007653 | None:intergenic | 45.0% | |
| AGGTGTAGTAGTGGTGAACT+TGG | + | chr6_3:17007637-17007656 | None:intergenic | 45.0% | |
| GAAGGCCTATTGTTGCTCAT+TGG | + | chr6_3:17007708-17007727 | None:intergenic | 45.0% | |
| GATTGACTGCATCAGTGATG+AGG | - | chr6_3:17007802-17007821 | Msa0942350:CDS | 45.0% | |
| ! | AGTTGGTGCTTCTTCTTCCA+AGG | - | chr6_3:17007842-17007861 | Msa0942350:CDS | 45.0% |
| !! | CAAGCTATCCTTTGAAGCCT+TGG | + | chr6_3:17007862-17007881 | None:intergenic | 45.0% |
| !! | TCAAAGAGTGTTTGGAACCG+CGG | - | chr6_3:17008939-17008958 | Msa0942350:CDS | 45.0% |
| TATCATCGCCTTTCAGCTTG+AGG | - | chr6_3:17009188-17009207 | Msa0942350:CDS | 45.0% | |
| TCTTCTGTCCTCAAGCTGAA+AGG | + | chr6_3:17009199-17009218 | None:intergenic | 45.0% | |
| TCAGCTTGAGGACAGAAGAA+AGG | - | chr6_3:17009200-17009219 | Msa0942350:CDS | 45.0% | |
| CAGCTTGAGGACAGAAGAAA+GGG | - | chr6_3:17009201-17009220 | Msa0942350:CDS | 45.0% | |
| AAGGGCTGCAAGAAGAAAGA+AGG | - | chr6_3:17009219-17009238 | Msa0942350:intron | 45.0% | |
| ! | ATTCAGGTAGTGGTCTAGCT+TGG | + | chr6_3:17009690-17009709 | None:intergenic | 45.0% |
| !! | GCGCCATTGTTTTTCAGTGA+AGG | + | chr6_3:17010052-17010071 | None:intergenic | 45.0% |
| GCTTAGTCAGAAAAAGAGGG+TGG | + | chr6_3:17010319-17010338 | None:intergenic | 45.0% | |
| !! | AGAAATAAATATTTATAATT+AGG | - | chr6_3:17005478-17005497 | Msa0942350:CDS | 5.0% |
| !!! | TTATATTTAATTATTGTTTT+TGG | - | chr6_3:17005776-17005795 | Msa0942350:intron | 5.0% |
| GTTACGTCGAAGAAGCCGAA+AGG | - | chr6_3:17006513-17006532 | Msa0942350:intron | 50.0% | |
| ATTCCACGCAGTCAGCACAA+TGG | - | chr6_3:17007289-17007308 | Msa0942350:intron | 50.0% | |
| GGTGACTGCTGTATCGAGAT+TGG | - | chr6_3:17007310-17007329 | Msa0942350:intron | 50.0% | |
| GTCAACACATCGGTGGTCAT+TGG | + | chr6_3:17007414-17007433 | None:intergenic | 50.0% | |
| TCACACAGTCAACACATCGG+TGG | + | chr6_3:17007421-17007440 | None:intergenic | 50.0% | |
| AACTAGCAAGAAGGAACCGC+CGG | - | chr6_3:17007575-17007594 | Msa0942350:intron | 50.0% | |
| CGCGAAGCAGACGAATCAAT+AGG | + | chr6_3:17008556-17008575 | None:intergenic | 50.0% | |
| ACCATACAGCCGGTCCTAAA+TGG | - | chr6_3:17008578-17008597 | Msa0942350:intron | 50.0% | |
| ATTTCAACACTCGCACCACG+TGG | + | chr6_3:17008980-17008999 | None:intergenic | 50.0% | |
| CTTGAACCACGAGTCAGTGT+CGG | - | chr6_3:17009810-17009829 | Msa0942350:intron | 50.0% | |
| GGAGGATGATGTGCCAAGAT+AGG | + | chr6_3:17010100-17010119 | None:intergenic | 50.0% | |
| !! | TCACCATTGTGCTGACTGCG+TGG | + | chr6_3:17007295-17007314 | None:intergenic | 55.0% |
| GCTTCGCGTAACCATACAGC+CGG | - | chr6_3:17008568-17008587 | Msa0942350:intron | 55.0% | |
| ! | GCCATTTAGGACCGGCTGTA+TGG | + | chr6_3:17008582-17008601 | None:intergenic | 55.0% |
| ! | GAGCAAGCGCCATTTAGGAC+CGG | + | chr6_3:17008590-17008609 | None:intergenic | 55.0% |
| CCAGAGAGCAAGCGCCATTT+AGG | + | chr6_3:17008595-17008614 | None:intergenic | 55.0% | |
| CCTAAATGGCGCTTGCTCTC+TGG | - | chr6_3:17008592-17008611 | Msa0942350:CDS | 55.0% | |
| !! | AAGAGTGTTTGGAACCGCGG+TGG | - | chr6_3:17008942-17008961 | Msa0942350:CDS | 55.0% |
| ! | AGAGTGTTTGGAACCGCGGT+GGG | - | chr6_3:17008943-17008962 | Msa0942350:CDS | 55.0% |
| !! | AAGTAGCCGACACTGACTCG+TGG | + | chr6_3:17009819-17009838 | None:intergenic | 55.0% |
| ! | GAGTGTTTGGAACCGCGGTG+GGG | - | chr6_3:17008944-17008963 | Msa0942350:CDS | 60.0% |
| ! | AGTGTTTGGAACCGCGGTGG+GGG | - | chr6_3:17008945-17008964 | Msa0942350:CDS | 60.0% |
| TGGGGGATGCTCTCACCACG+TGG | - | chr6_3:17008962-17008981 | Msa0942350:CDS | 65.0% | |
| !! | GGTGAGAGCATCCCCCACCG+CGG | + | chr6_3:17008959-17008978 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 17005079 | 17010558 | 17005079 | ID=Msa0942350;Name=Msa0942350 |
| chr6_3 | mRNA | 17005079 | 17010558 | 17005079 | ID=Msa0942350-mRNA-1;Parent=Msa0942350;Name=Msa0942350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=71|1|1|1|1|1|9|348|571 |
| chr6_3 | exon | 17005079 | 17005678 | 17005079 | ID=Msa0942350-mRNA-1:exon:5200;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17005887 | 17006000 | 17005887 | ID=Msa0942350-mRNA-1:exon:5199;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17006235 | 17006300 | 17006235 | ID=Msa0942350-mRNA-1:exon:5198;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17006397 | 17006472 | 17006397 | ID=Msa0942350-mRNA-1:exon:5197;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17007020 | 17007094 | 17007020 | ID=Msa0942350-mRNA-1:exon:5196;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17007211 | 17007266 | 17007211 | ID=Msa0942350-mRNA-1:exon:5195;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17007732 | 17008097 | 17007732 | ID=Msa0942350-mRNA-1:exon:5194;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17008580 | 17009221 | 17008580 | ID=Msa0942350-mRNA-1:exon:5193;Parent=Msa0942350-mRNA-1 |
| chr6_3 | exon | 17010419 | 17010558 | 17010419 | ID=Msa0942350-mRNA-1:exon:5192;Parent=Msa0942350-mRNA-1 |
| chr6_3 | five_prime_UTR | 17010488 | 17010558 | 17010488 | ID=Msa0942350-mRNA-1:five_prime_utr;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17010419 | 17010487 | 17010419 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17008580 | 17009221 | 17008580 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17007732 | 17008097 | 17007732 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17007211 | 17007266 | 17007211 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17007020 | 17007094 | 17007020 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17006397 | 17006472 | 17006397 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17006235 | 17006300 | 17006235 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17005887 | 17006000 | 17005887 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | CDS | 17005427 | 17005678 | 17005427 | ID=Msa0942350-mRNA-1:cds;Parent=Msa0942350-mRNA-1 |
| chr6_3 | three_prime_UTR | 17005079 | 17005426 | 17005079 | ID=Msa0942350-mRNA-1:three_prime_utr;Parent=Msa0942350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
