AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1043080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043080 MtrunA17_Chr6g0458401 87.475 503 39 4 1 490 1 492 0.0 849
Msa1043080 MtrunA17_Chr3g0123121 62.376 101 37 1 4 103 5 105 9.74e-32 129
Msa1043080 MtrunA17_Chr7g0228951 46.154 143 50 3 287 428 73 189 3.60e-24 100
Msa1043080 MtrunA17_Chr5g0414961 61.972 71 27 0 26 96 118 188 3.24e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043080 AT3G27350.1 65.625 96 32 1 1 95 1 96 3.75e-36 135
Msa1043080 AT3G27350.2 65.625 96 32 1 1 95 1 96 2.30e-35 135
Msa1043080 AT3G01710.4 71.951 82 16 2 1 81 1 76 3.80e-31 123
Msa1043080 AT3G01710.2 56.452 124 43 3 1 119 1 118 6.81e-31 124
Msa1043080 AT3G01710.2 43.258 178 83 6 317 492 227 388 1.36e-29 120
Msa1043080 AT3G01710.1 56.452 124 43 3 1 119 1 118 8.94e-31 124
Msa1043080 AT3G01710.1 42.541 181 83 7 317 492 227 391 1.03e-27 115
Msa1043080 AT3G01710.3 56.452 124 43 3 1 119 1 118 1.37e-30 124
Msa1043080 AT3G01710.3 44.000 175 80 6 317 489 227 385 2.33e-29 120
Msa1043080 AT5G40700.3 63.415 82 29 1 1 81 1 82 3.89e-30 119
Msa1043080 AT5G40700.2 63.415 82 29 1 1 81 1 82 1.77e-29 118
Msa1043080 AT5G40700.1 63.415 82 29 1 1 81 1 82 1.79e-29 118
Msa1043080 AT3G26050.1 53.846 91 41 1 1 90 1 91 1.96e-25 110
Msa1043080 AT1G70100.5 41.818 110 60 1 13 118 8 117 2.33e-21 97.4
Msa1043080 AT1G70100.1 41.818 110 60 1 13 118 8 117 2.33e-21 97.4
Msa1043080 AT1G70100.2 41.818 110 60 1 13 118 8 117 2.33e-21 97.4
Msa1043080 AT1G24160.1 35.349 215 98 9 26 225 31 219 2.37e-21 97.8
Msa1043080 AT1G24160.2 35.349 215 98 9 26 225 31 219 2.37e-21 97.8
Msa1043080 AT1G70100.4 41.818 110 60 1 13 118 8 117 3.01e-21 97.1
Msa1043080 AT1G70100.3 41.818 110 60 1 13 118 8 117 3.48e-21 97.1
Msa1043080 AT1G70100.6 41.818 110 60 1 13 118 8 117 3.48e-21 97.1
Msa1043080 AT3G27350.3 73.214 56 15 0 40 95 1 56 4.10e-20 90.9
Msa1043080 AT1G70950.1 57.534 73 29 1 23 95 14 84 4.54e-17 84.3
Msa1043080 AT1G23060.1 70.588 51 15 0 33 83 22 72 2.03e-16 81.3
Msa1043080 AT1G23060.4 70.588 51 15 0 33 83 22 72 2.03e-16 81.3

Find 81 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATTGCAGCAGGTTTC+TGG 0.119202 7_2:-918821 Msa1043080:intron
GGTGTAAAATTTACTTTCTT+TGG 0.156449 7_2:+918587 None:intergenic
AGTAGCAAAGTTATCTATTT+TGG 0.187455 7_2:+918667 None:intergenic
TTCAAGTTGATAAAGTTTAA+TGG 0.204714 7_2:-918743 Msa1043080:CDS
TTCCTTTCCTTGTAAAATTC+AGG 0.242565 7_2:+916649 None:intergenic
ATTCTTTGCAATGAAATTCT+TGG 0.248860 7_2:+916284 None:intergenic
TTACTAATTGCAGGCTTCTA+AGG 0.257175 7_2:-917993 Msa1043080:intron
ACCATACAGCCGGTCCTAAA+TGG 0.300596 7_2:-917773 Msa1043080:CDS
CCAGAGAGCAAGCGCCATTT+AGG 0.310606 7_2:+917759 None:intergenic
TAACATAGTACCTTCAATAT+TGG 0.311571 7_2:+919302 None:intergenic
AATCTATTAAATTCTCTAAT+AGG 0.315430 7_2:+918566 None:intergenic
TTCAATATTGGTGTCATGAT+TGG 0.315639 7_2:+919314 None:intergenic
GATTACCTGATTGGAATCAT+TGG 0.321887 7_2:+921144 None:intergenic
TCCAGTCATGACACCAATAT+TGG 0.323466 7_2:-919441 Msa1043080:CDS
CTGAAAGGCGATGATATAAT+TGG 0.323544 7_2:+917170 None:intergenic
CAAACAGGGTCAACGTAGTT+TGG 0.332532 7_2:-921264 Msa1043080:five_prime_UTR
CCTAAATGGCGCTTGCTCTC+TGG 0.336773 7_2:-917759 Msa1043080:CDS
TCATGATTTAGATTCAAATA+TGG 0.345263 7_2:-919588 Msa1043080:CDS
CTTGGACAATCAATCTCATT+TGG 0.346035 7_2:-919914 Msa1043080:CDS
TCTTATTTGCAGGAGAAAAC+AGG 0.368548 7_2:-916727 Msa1043080:intron
TCCAATATTGGTGTCATGAC+TGG 0.375481 7_2:+919440 None:intergenic
ATTCCAGAAGCATAACAAAA+TGG 0.379083 7_2:+921169 None:intergenic
TGGCATTGATCAAGAAGTTT+CGG 0.381416 7_2:-918801 Msa1043080:CDS
CTCCATTAACAGAAAATAAC+AGG 0.381810 7_2:-917946 Msa1043080:intron
TTCTTCTGTGCAACTGAACC+TGG 0.381974 7_2:+919803 None:intergenic
ATGGTAGCAGTAAATTTAAC+AGG 0.397658 7_2:+918695 None:intergenic
ATTAAACTTTATCAACTTGA+AGG 0.399061 7_2:+918745 None:intergenic
CAAGCTATCCTTTGAAGCCT+TGG 0.408531 7_2:+918490 None:intergenic
AAGAATTTCATTGCAAAGAA+TGG 0.409760 7_2:-916282 Msa1043080:CDS
TAGCTTGGAAGCAAAAGCTT+TGG 0.422621 7_2:+916680 None:intergenic
AGAAACTGAAATACCATAGT+TGG 0.431426 7_2:+918452 None:intergenic
TGATGGTTGAATTGCAAAAG+AGG 0.436861 7_2:-919517 Msa1043080:CDS
GCCATTTAGGACCGGCTGTA+TGG 0.437996 7_2:+917772 None:intergenic
CTACTCCAATGAGCAACAAT+AGG 0.440722 7_2:-918649 Msa1043080:CDS
AGTCACTAGCATGGGAGAAA+TGG 0.441400 7_2:-919877 Msa1043080:CDS
GAAGGCCTATTGTTGCTCAT+TGG 0.444492 7_2:+918644 None:intergenic
ATGAATGAAGATTACCTGAT+TGG 0.445142 7_2:+921135 None:intergenic
TGCAAAGAATGGTCCTATCT+TGG 0.446170 7_2:-916271 Msa1043080:CDS
AAATTTACTTTCTTTGGAGT+TGG 0.446539 7_2:+918593 None:intergenic
AGTTGGTGCTTCTTCTTCCA+AGG 0.449272 7_2:-918507 Msa1043080:CDS
AATTTCCAATGATTCCAATC+AGG 0.452229 7_2:-921149 Msa1043080:intron
GGAGGATGATGTGCCAAGAT+AGG 0.460995 7_2:+916258 None:intergenic
TCCTTGTAAAATTCAGGTAG+TGG 0.461475 7_2:+916655 None:intergenic
TCAGCTTGAGGACAGAAGAA+AGG 0.475932 7_2:-917151 Msa1043080:CDS
ATCAACTTGAAGGAAGAAAC+CGG 0.484003 7_2:+918755 None:intergenic
AAAGTATGAAGTGGTTGTTA+AGG 0.485920 7_2:-919639 Msa1043080:CDS
CAGCTTGAGGACAGAAGAAA+GGG 0.487619 7_2:-917150 Msa1043080:CDS
TTCTTCTTCCAAGGCTTCAA+AGG 0.488153 7_2:-918498 Msa1043080:CDS
GACAATCAATCTCATTTGGA+AGG 0.493636 7_2:-919910 Msa1043080:CDS
ATCAAATATTGAAACAAGAA+AGG 0.496957 7_2:-916623 Msa1043080:intron
AATCATGACACCAATATTGA+AGG 0.498827 7_2:-919312 Msa1043080:intron
TATCATCGCCTTTCAGCTTG+AGG 0.505296 7_2:-917163 Msa1043080:CDS
AGGTGTAGTAGTGGTGAACT+TGG 0.518451 7_2:+918715 None:intergenic
ATTCAGGTAGTGGTCTAGCT+TGG 0.521457 7_2:+916665 None:intergenic
AGATTTGAAAATACAAGAGT+TGG 0.522202 7_2:-918524 Msa1043080:CDS
AAGGGCTGCAAGAAGAAAGA+AGG 0.536275 7_2:-917132 Msa1043080:intron
CGCGAAGCAGACGAATCAAT+AGG 0.537351 7_2:+917798 None:intergenic
ATCTTCATTGAATTTGAAGT+CGG 0.543789 7_2:+916237 None:intergenic
TGTAGTAGTGGTGAACTTGG+AGG 0.544604 7_2:+918718 None:intergenic
TTCATTGAATTTGAAGTCGG+AGG 0.553336 7_2:+916240 None:intergenic
AATATTGGTGTCATGATTGG+AGG 0.559272 7_2:+919317 None:intergenic
AACAATACAAATCATGCACT+TGG 0.563437 7_2:-919932 Msa1043080:CDS
TCTTCTGTCCTCAAGCTGAA+AGG 0.565810 7_2:+917155 None:intergenic
GAAAAGTTCAAAGTATGAAG+TGG 0.570558 7_2:-919648 Msa1043080:CDS
TTTCGGCTTCTTCGACGTAA+CGG 0.577418 7_2:+919837 None:intergenic
GGAAGAACAAGATGATGCAA+AGG 0.580859 7_2:-919618 Msa1043080:CDS
CTTATTTGCAGGAGAAAACA+GGG 0.582152 7_2:-916726 Msa1043080:intron
AACTAGCAAGAAGGAACCGC+CGG 0.582275 7_2:-918774 Msa1043080:CDS
GAGCAAGCGCCATTTAGGAC+CGG 0.582652 7_2:+917764 None:intergenic
CATGTCAGAGTCACTAGCAT+GGG 0.586091 7_2:-919885 Msa1043080:CDS
TTCGGCATCAACTAGCAAGA+AGG 0.596914 7_2:-918783 Msa1043080:CDS
TCTGCATTGCTTAATGCAGA+AGG 0.600195 7_2:+918626 None:intergenic
AAATTTAACAGGTGTAGTAG+TGG 0.614134 7_2:+918706 None:intergenic
GATTGACTGCATCAGTGATG+AGG 0.616501 7_2:-918547 Msa1043080:CDS
GCTTCGCGTAACCATACAGC+CGG 0.618836 7_2:-917783 Msa1043080:CDS
GCCGAAAGGTATTCAAAACC+AGG 0.618947 7_2:-919821 Msa1043080:CDS
TCATGTCAGAGTCACTAGCA+TGG 0.633171 7_2:-919886 Msa1043080:CDS
GCTTCACAAAGCAATGTCGA+TGG 0.654817 7_2:-919704 Msa1043080:CDS
GTTACGTCGAAGAAGCCGAA+AGG 0.665024 7_2:-919835 Msa1043080:CDS
AATATTGGTGTCATGACTGG+AGG 0.688360 7_2:+919443 None:intergenic
AACTTGAAGGAAGAAACCGG+CGG 0.806464 7_2:+918758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAGTTTTCATTATTT+TGG - chr7_2:916470-916489 Msa1043080:intron 10.0%
!!! AAATAAATTGTGATTTATTT+TGG + chr7_2:916507-916526 None:intergenic 10.0%
!! AGAATTTCTATTATTGAATT+TGG - chr7_2:916399-916418 Msa1043080:intron 15.0%
!! TCATGAAAAATTAACTAAAA+GGG + chr7_2:916703-916722 None:intergenic 15.0%
!! TTCATGAAAAATTAACTAAA+AGG + chr7_2:916704-916723 None:intergenic 15.0%
!!! TATGTAAATTGATTTTTGTT+TGG - chr7_2:917227-917246 Msa1043080:intron 15.0%
!!! TACTATGTTAATTTATTTTG+AGG - chr7_2:918200-918219 Msa1043080:intron 15.0%
!! AATCTATTAAATTCTCTAAT+AGG + chr7_2:918926-918945 None:intergenic 15.0%
!!! TTTAGAGTCTAAAAATATTT+TGG - chr7_2:919158-919177 Msa1043080:intron 15.0%
!!! TCTAAAAATATTTTGGATTT+TGG - chr7_2:919165-919184 Msa1043080:intron 15.0%
!!! TATGTATTTTGTAAAATCAT+AGG - chr7_2:919659-919678 Msa1043080:CDS 15.0%
!! AATTGAAACTTATTAGATTA+AGG - chr7_2:919870-919889 Msa1043080:CDS 15.0%
!! TTTATGATGTTTAATAACAT+TGG - chr7_2:920007-920026 Msa1043080:intron 15.0%
!! TTCAATTATATAGTATTACA+TGG - chr7_2:921002-921021 Msa1043080:intron 15.0%
!!! TTTACCAATTTTTACTATTA+TGG + chr7_2:921050-921069 None:intergenic 15.0%
!!! AGTGAATTATTTTAGTGTAT+AGG + chr7_2:916428-916447 None:intergenic 20.0%
!!! AAAAAATTCTGAAAACATGT+AGG + chr7_2:916542-916561 None:intergenic 20.0%
!!! CATGTTTTCAGAATTTTTTT+AGG - chr7_2:916543-916562 Msa1043080:intron 20.0%
!! TATGAAACAATATATGAACA+CGG - chr7_2:916597-916616 Msa1043080:intron 20.0%
!!! TTGCCATAATTTTCAAAATA+TGG - chr7_2:916674-916693 Msa1043080:CDS 20.0%
!!! TGCCATAATTTTCAAAATAT+GGG - chr7_2:916675-916694 Msa1043080:CDS 20.0%
!! CATGAAAAATTAACTAAAAG+GGG + chr7_2:916702-916721 None:intergenic 20.0%
!! TGATTAGATTATGTTGTAAA+CGG - chr7_2:916881-916900 Msa1043080:intron 20.0%
!! AACTATACATGTTTGAATAA+TGG + chr7_2:916945-916964 None:intergenic 20.0%
!!! TAAACCTTAAGATTTTGTTT+TGG - chr7_2:917443-917462 Msa1043080:intron 20.0%
!!! AAACCTTAAGATTTTGTTTT+GGG - chr7_2:917444-917463 Msa1043080:intron 20.0%
!! TCATGATTTAGATTCAAATA+TGG - chr7_2:917901-917920 Msa1043080:intron 20.0%
!!! AAAGTAACAATGTTGTTTTA+AGG - chr7_2:917942-917961 Msa1043080:intron 20.0%
!!! TTGTTTTAAGGAATTCATTA+AGG - chr7_2:918080-918099 Msa1043080:intron 20.0%
!!! TGTTTTAAGGAATTCATTAA+GGG - chr7_2:918081-918100 Msa1043080:intron 20.0%
!! ATCGAAACAAAACAAAATAA+GGG + chr7_2:918255-918274 None:intergenic 20.0%
!! AATCGAAACAAAACAAAATA+AGG + chr7_2:918256-918275 None:intergenic 20.0%
!! AATCGTGAATTTAAAAATGA+AGG + chr7_2:918285-918304 None:intergenic 20.0%
!!! CATTTTTAAATTCACGATTT+CGG - chr7_2:918286-918305 Msa1043080:intron 20.0%
!!! AAAAAAGACAAATACAGTTT+TGG + chr7_2:918617-918636 None:intergenic 20.0%
!!! ACTGTATTTGTCTTTTTTTA+AGG - chr7_2:918619-918638 Msa1043080:CDS 20.0%
!! ATTAAACTTTATCAACTTGA+AGG + chr7_2:918747-918766 None:intergenic 20.0%
!!! TTCAAGTTGATAAAGTTTAA+TGG - chr7_2:918746-918765 Msa1043080:CDS 20.0%
!! CATAAGATACTAATAGTATA+AGG + chr7_2:919083-919102 None:intergenic 20.0%
!!! TAAGATTTGATTCGAAAAAT+AGG - chr7_2:919364-919383 Msa1043080:CDS 20.0%
!! CAATATGGTATGAATTAAAA+AGG + chr7_2:919845-919864 None:intergenic 20.0%
!!! CTTTTTAATTCATACCATAT+TGG - chr7_2:919843-919862 Msa1043080:CDS 20.0%
!!! CATCATATTAATAGCTTTTT+TGG - chr7_2:919935-919954 Msa1043080:CDS 20.0%
!!! TTTTCATCATTTTTAGAAAC+TGG - chr7_2:920459-920478 Msa1043080:intron 20.0%
!! ATCAAATATTGAAACAAGAA+AGG - chr7_2:920866-920885 Msa1043080:intron 20.0%
! AGTGAAAAAACAAAACATCA+TGG - chr7_2:916274-916293 Msa1043080:CDS 25.0%
! GTGAAAAAACAAAACATCAT+GGG - chr7_2:916275-916294 Msa1043080:CDS 25.0%
!!! GTCCCATATTTTGAAAATTA+TGG + chr7_2:916680-916699 None:intergenic 25.0%
! TTTATAGATGATTGATGAGT+TGG - chr7_2:916784-916803 Msa1043080:intron 25.0%
! TTATAGATGATTGATGAGTT+GGG - chr7_2:916785-916804 Msa1043080:intron 25.0%
! CTCAATAGTTCACATAAAAT+TGG - chr7_2:917143-917162 Msa1043080:CDS 25.0%
!!! TTCACATAAAATTGGTTTTG+TGG - chr7_2:917151-917170 Msa1043080:CDS 25.0%
! TGAGACTAAATCAATTCTAT+AGG - chr7_2:917267-917286 Msa1043080:intron 25.0%
!! TGATTCTAAAAGCTAGAATT+TGG + chr7_2:917301-917320 None:intergenic 25.0%
! ATATGATACAAGTGTATGTT+TGG + chr7_2:917401-917420 None:intergenic 25.0%
!!! GTTTCATAGTTTTTTCAATG+TGG + chr7_2:917522-917541 None:intergenic 25.0%
!!! TGTTTTAAGGAATTCAATGA+TGG - chr7_2:917955-917974 Msa1043080:CDS 25.0%
! TAACATAGTACCTTCAATAT+TGG + chr7_2:918190-918209 None:intergenic 25.0%
!!! GTTATCTATTTTGGAAGAAA+TGG + chr7_2:918816-918835 None:intergenic 25.0%
!! AGTAGCAAAGTTATCTATTT+TGG + chr7_2:918825-918844 None:intergenic 25.0%
!!! AAATTTACTTTCTTTGGAGT+TGG + chr7_2:918899-918918 None:intergenic 25.0%
! GGTGTAAAATTTACTTTCTT+TGG + chr7_2:918905-918924 None:intergenic 25.0%
! AGATTTGAAAATACAAGAGT+TGG - chr7_2:918965-918984 Msa1043080:intron 25.0%
!! TTCACTATGATGATTCATTT+TGG - chr7_2:919220-919239 Msa1043080:intron 25.0%
! TTCAAATGACAAAAGAAAAG+TGG + chr7_2:919264-919283 None:intergenic 25.0%
!!! TACCTGTTATTTTCTGTTAA+TGG + chr7_2:919548-919567 None:intergenic 25.0%
! TTAGTAACTTCGTAGAAATT+AGG + chr7_2:919571-919590 None:intergenic 25.0%
! AAATACATAAACACAATGTC+AGG + chr7_2:919648-919667 None:intergenic 25.0%
! AGTTTCAATTCTTTCCAATA+TGG + chr7_2:919860-919879 None:intergenic 25.0%
!!! ATAACTGTTACTTTACTTGA+AGG - chr7_2:920231-920250 Msa1043080:intron 25.0%
!!! TAACTGTTACTTTACTTGAA+GGG - chr7_2:920232-920251 Msa1043080:intron 25.0%
! TAAACAGAAGAGAAACATAA+GGG + chr7_2:920394-920413 None:intergenic 25.0%
! TTAAACAGAAGAGAAACATA+AGG + chr7_2:920395-920414 None:intergenic 25.0%
! CTTCTGTTTAATTGATTATG+CGG - chr7_2:920404-920423 Msa1043080:intron 25.0%
!! TATATAATGCTCTTATTTGC+AGG - chr7_2:920752-920771 Msa1043080:intron 25.0%
!!! GGTAATCTTGTTTTTCAAAT+TGG - chr7_2:920887-920906 Msa1043080:intron 25.0%
!!! GTTTTTCAAATTGGTAAATG+AGG - chr7_2:920896-920915 Msa1043080:intron 25.0%
! TTGAAAATAACTGAATGTGT+CGG + chr7_2:920987-921006 None:intergenic 25.0%
! GTGTCCATAATAGTAAAAAT+TGG - chr7_2:921043-921062 Msa1043080:intron 25.0%
! ATTCTTTGCAATGAAATTCT+TGG + chr7_2:921208-921227 None:intergenic 25.0%
! AAGAATTTCATTGCAAAGAA+TGG - chr7_2:921207-921226 Msa1043080:exon 25.0%
!! ATCTTCATTGAATTTGAAGT+CGG + chr7_2:921255-921274 None:intergenic 25.0%
! ATTCCAGAAGCATAACAAAA+TGG + chr7_2:916323-916342 None:intergenic 30.0%
AATTTCCAATGATTCCAATC+AGG - chr7_2:916340-916359 Msa1043080:intron 30.0%
ATGAATGAAGATTACCTGAT+TGG + chr7_2:916357-916376 None:intergenic 30.0%
ACTTCACTTGTATCATGTAA+TGG + chr7_2:916817-916836 None:intergenic 30.0%
GAATGATGCAAGATTGATTA+TGG - chr7_2:917190-917209 Msa1043080:intron 30.0%
AAATTTGACTCATCGAAAAG+TGG - chr7_2:917373-917392 Msa1043080:intron 30.0%
ACTCCCAAAACAAAATCTTA+AGG + chr7_2:917450-917469 None:intergenic 30.0%
!!! GATTTTGTTTTGGGAGTATA+TGG - chr7_2:917453-917472 Msa1043080:intron 30.0%
AACAATACAAATCATGCACT+TGG - chr7_2:917557-917576 Msa1043080:intron 30.0%
GAAAAGTTCAAAGTATGAAG+TGG - chr7_2:917841-917860 Msa1043080:intron 30.0%
AAAGTATGAAGTGGTTGTTA+AGG - chr7_2:917850-917869 Msa1043080:intron 30.0%
!!! ACAACTGCTTTTTCCAATAT+TGG + chr7_2:918064-918083 None:intergenic 30.0%
!! TGGAAAAAGCAGTTGTTTTA+AGG - chr7_2:918068-918087 Msa1043080:intron 30.0%
!! TTCAATATTGGTGTCATGAT+TGG + chr7_2:918178-918197 None:intergenic 30.0%
AATCATGACACCAATATTGA+AGG - chr7_2:918177-918196 Msa1043080:intron 30.0%
!! ATACTTATGTGGCTTTAGAT+TGG - chr7_2:918386-918405 Msa1043080:intron 30.0%
!!! TTTTTTTAAGGTCATAGTCG+TGG - chr7_2:918631-918650 Msa1043080:CDS 30.0%
AAATTTAACAGGTGTAGTAG+TGG + chr7_2:918786-918805 None:intergenic 30.0%
ATGGTAGCAGTAAATTTAAC+AGG + chr7_2:918797-918816 None:intergenic 30.0%
AGAAACTGAAATACCATAGT+TGG + chr7_2:919040-919059 None:intergenic 30.0%
AATGAATCATCATAGTGAAC+AGG + chr7_2:919219-919238 None:intergenic 30.0%
!!! GAGTCATTTTTACTAATTGC+AGG - chr7_2:919487-919506 Msa1043080:CDS 30.0%
CTCCATTAACAGAAAATAAC+AGG - chr7_2:919543-919562 Msa1043080:CDS 30.0%
ACACACGAATTACTCAATAT+TGG + chr7_2:919816-919835 None:intergenic 30.0%
GAAACTTATTAGATTAAGGC+TGG - chr7_2:919874-919893 Msa1043080:CDS 30.0%
GAAACACATATTTGTACACT+TGG + chr7_2:919910-919929 None:intergenic 30.0%
! TAATAACATTGGCTAAAACG+TGG - chr7_2:920018-920037 Msa1043080:intron 30.0%
!! AAAACAGTTCAAAGAGTGTT+TGG - chr7_2:920069-920088 Msa1043080:intron 30.0%
ACAGTTATTGTGTGTTTAAG+TGG + chr7_2:920210-920229 None:intergenic 30.0%
!! AACTGTTACTTTACTTGAAG+GGG - chr7_2:920233-920252 Msa1043080:intron 30.0%
! CAAACCTTGAATTTTTCATG+CGG + chr7_2:920526-920545 None:intergenic 30.0%
! TACCTGAATTTTACAAGGAA+AGG - chr7_2:920838-920857 Msa1043080:intron 30.0%
TTCCTTTCCTTGTAAAATTC+AGG + chr7_2:920843-920862 None:intergenic 30.0%
ACATCATGAATCACTAATGA+AGG - chr7_2:921105-921124 Msa1043080:intron 30.0%
! AACGTAGTTTGGATCTTTTG+AGG - chr7_2:916236-916255 Msa1043080:CDS 35.0%
!!! TTTTGAGGTTTCAACGTTGT+TGG - chr7_2:916251-916270 Msa1043080:CDS 35.0%
!! CAACCATTTTGTTATGCTTC+TGG - chr7_2:916317-916336 Msa1043080:intron 35.0%
GATTACCTGATTGGAATCAT+TGG + chr7_2:916348-916367 None:intergenic 35.0%
TCAATGAGTGTCTTGTATTC+AGG + chr7_2:917080-917099 None:intergenic 35.0%
! ACAAGACACTCATTGATTGT+CGG - chr7_2:917084-917103 Msa1043080:intron 35.0%
CTTGGACAATCAATCTCATT+TGG - chr7_2:917575-917594 Msa1043080:intron 35.0%
GACAATCAATCTCATTTGGA+AGG - chr7_2:917579-917598 Msa1043080:intron 35.0%
!!! ACCTGGTTTTGAATACCTTT+CGG + chr7_2:917672-917691 None:intergenic 35.0%
TGATGGTTGAATTGCAAAAG+AGG - chr7_2:917972-917991 Msa1043080:CDS 35.0%
!! AATATTGGTGTCATGATTGG+AGG + chr7_2:918175-918194 None:intergenic 35.0%
TTTCCTAGTGTATGCATTTG+AGG - chr7_2:918336-918355 Msa1043080:intron 35.0%
!! GATGGTCAGTATTTCAAGTT+CGG + chr7_2:918521-918540 None:intergenic 35.0%
!! TGGCATTGATCAAGAAGTTT+CGG - chr7_2:918688-918707 Msa1043080:CDS 35.0%
ATCAACTTGAAGGAAGAAAC+CGG + chr7_2:918737-918756 None:intergenic 35.0%
! TCCTCTAAAAACTCCAACTA+TGG - chr7_2:919024-919043 Msa1043080:intron 35.0%
!! ACCATAGTTGGAGTTTTTAG+AGG + chr7_2:919028-919047 None:intergenic 35.0%
TGTTTACAGCAATTGCAACT+TGG + chr7_2:919457-919476 None:intergenic 35.0%
TTACTAATTGCAGGCTTCTA+AGG - chr7_2:919496-919515 Msa1043080:CDS 35.0%
TAGAGAAAACTTGACACTGA+AGG + chr7_2:919614-919633 None:intergenic 35.0%
ACACATATTTGTACACTTGG+TGG + chr7_2:919907-919926 None:intergenic 35.0%
!!! CTTGAAGGGGCTTTATTTTT+CGG - chr7_2:920246-920265 Msa1043080:intron 35.0%
CTGAAAGGCGATGATATAAT+TGG + chr7_2:920322-920341 None:intergenic 35.0%
CTTGTTAAGTTAGTCCTACA+AGG - chr7_2:920598-920617 Msa1043080:intron 35.0%
!! AGTCTCTAAAATCACCTTGT+AGG + chr7_2:920615-920634 None:intergenic 35.0%
TTACTGAAATCACCAGACTA+AGG - chr7_2:920652-920671 Msa1043080:intron 35.0%
ACCAGACTAAGGACTAAATA+TGG - chr7_2:920663-920682 Msa1043080:intron 35.0%
TCCATATTTAGTCCTTAGTC+TGG + chr7_2:920667-920686 None:intergenic 35.0%
! TCTTATTTGCAGGAGAAAAC+AGG - chr7_2:920762-920781 Msa1043080:intron 35.0%
CTTATTTGCAGGAGAAAACA+GGG - chr7_2:920763-920782 Msa1043080:intron 35.0%
! ACCACTACCTGAATTTTACA+AGG - chr7_2:920833-920852 Msa1043080:intron 35.0%
TCCTTGTAAAATTCAGGTAG+TGG + chr7_2:920837-920856 None:intergenic 35.0%
CACTCTTTCATACTGAGAAT+TGG + chr7_2:921138-921157 None:intergenic 35.0%
AGACCTTCACTGAAAAACAA+TGG - chr7_2:921180-921199 Msa1043080:CDS 35.0%
! TTCATTGAATTTGAAGTCGG+AGG + chr7_2:921252-921271 None:intergenic 35.0%
GGAAGAACAAGATGATGCAA+AGG - chr7_2:917871-917890 Msa1043080:intron 40.0%
!! AATATTGGTGTCATGACTGG+AGG + chr7_2:918049-918068 None:intergenic 40.0%
TCCAGTCATGACACCAATAT+TGG - chr7_2:918048-918067 Msa1043080:intron 40.0%
!! TCCAATATTGGTGTCATGAC+TGG + chr7_2:918052-918071 None:intergenic 40.0%
GACACACCTTTAGATAACTG+TGG + chr7_2:918314-918333 None:intergenic 40.0%
CAACCTCAAATGCATACACT+AGG + chr7_2:918342-918361 None:intergenic 40.0%
! CCACATAAGTATGTCGCTTA+CGG + chr7_2:918378-918397 None:intergenic 40.0%
GTCATTGGACTAAGATCAGA+TGG + chr7_2:918539-918558 None:intergenic 40.0%
CATTCACACAGTCAACACAT+CGG + chr7_2:918564-918583 None:intergenic 40.0%
ATCTGTGACGACAGCATATA+AGG - chr7_2:918590-918609 Msa1043080:CDS 40.0%
ATGTTGGTACTTATTGCAGC+AGG - chr7_2:918661-918680 Msa1043080:CDS 40.0%
TACTTATTGCAGCAGGTTTC+TGG - chr7_2:918668-918687 Msa1043080:CDS 40.0%
CTACTCCAATGAGCAACAAT+AGG - chr7_2:918840-918859 Msa1043080:intron 40.0%
TCTGCATTGCTTAATGCAGA+AGG + chr7_2:918866-918885 None:intergenic 40.0%
TTCTTCTTCCAAGGCTTCAA+AGG - chr7_2:918991-919010 Msa1043080:intron 40.0%
! CAGTCCTTCAACTTCAGTTT+TGG - chr7_2:919423-919442 Msa1043080:CDS 40.0%
CAGTCCAAAACTGAAGTTGA+AGG + chr7_2:919430-919449 None:intergenic 40.0%
!! CATTGGCTAAAACGTGGTTT+TGG - chr7_2:920024-920043 Msa1043080:intron 40.0%
TAGCTTGGAAGCAAAAGCTT+TGG + chr7_2:920812-920831 None:intergenic 40.0%
GTGGTTCAAGTACATAGACA+TGG + chr7_2:920937-920956 None:intergenic 40.0%
AGTGATTCATGATGTGTCTG+CGG + chr7_2:921100-921119 None:intergenic 40.0%
TTCAGTGAAGGTCTGTTAAG+AGG + chr7_2:921174-921193 None:intergenic 40.0%
TGCAAAGAATGGTCCTATCT+TGG - chr7_2:921218-921237 Msa1043080:exon 40.0%
CAAACAGGGTCAACGTAGTT+TGG - chr7_2:916225-916244 Msa1043080:CDS 45.0%
TCATGTCAGAGTCACTAGCA+TGG - chr7_2:917603-917622 Msa1043080:intron 45.0%
CATGTCAGAGTCACTAGCAT+GGG - chr7_2:917604-917623 Msa1043080:intron 45.0%
AGTCACTAGCATGGGAGAAA+TGG - chr7_2:917612-917631 Msa1043080:intron 45.0%
TTTCGGCTTCTTCGACGTAA+CGG + chr7_2:917655-917674 None:intergenic 45.0%
!! GCCGAAAGGTATTCAAAACC+AGG - chr7_2:917668-917687 Msa1043080:intron 45.0%
TTCTTCTGTGCAACTGAACC+TGG + chr7_2:917689-917708 None:intergenic 45.0%
GCTTCACAAAGCAATGTCGA+TGG - chr7_2:917785-917804 Msa1043080:CDS 45.0%
!! TCGGTGCCACAGTTATCTAA+AGG - chr7_2:918305-918324 Msa1043080:intron 45.0%
CCGTAAGCGACATACTTATG+TGG - chr7_2:918375-918394 Msa1043080:intron 45.0%
!! GTGTTGACTGTGTGAATGTG+TGG - chr7_2:918566-918585 Msa1043080:CDS 45.0%
TAGTCGTGGCACTAACATGT+TGG - chr7_2:918645-918664 Msa1043080:CDS 45.0%
TTCGGCATCAACTAGCAAGA+AGG - chr7_2:918706-918725 Msa1043080:CDS 45.0%
AACTTGAAGGAAGAAACCGG+CGG + chr7_2:918734-918753 None:intergenic 45.0%
TGTAGTAGTGGTGAACTTGG+AGG + chr7_2:918774-918793 None:intergenic 45.0%
AGGTGTAGTAGTGGTGAACT+TGG + chr7_2:918777-918796 None:intergenic 45.0%
GAAGGCCTATTGTTGCTCAT+TGG + chr7_2:918848-918867 None:intergenic 45.0%
GATTGACTGCATCAGTGATG+AGG - chr7_2:918942-918961 Msa1043080:intron 45.0%
! AGTTGGTGCTTCTTCTTCCA+AGG - chr7_2:918982-919001 Msa1043080:intron 45.0%
!! CAAGCTATCCTTTGAAGCCT+TGG + chr7_2:919002-919021 None:intergenic 45.0%
!! TCAAAGAGTGTTTGGAACCG+CGG - chr7_2:920077-920096 Msa1043080:intron 45.0%
TATCATCGCCTTTCAGCTTG+AGG - chr7_2:920326-920345 Msa1043080:intron 45.0%
TCTTCTGTCCTCAAGCTGAA+AGG + chr7_2:920337-920356 None:intergenic 45.0%
TCAGCTTGAGGACAGAAGAA+AGG - chr7_2:920338-920357 Msa1043080:intron 45.0%
CAGCTTGAGGACAGAAGAAA+GGG - chr7_2:920339-920358 Msa1043080:intron 45.0%
AAGGGCTGCAAGAAGAAAGA+AGG - chr7_2:920357-920376 Msa1043080:intron 45.0%
GCAGCCGCATGAAAAATTCA+AGG - chr7_2:920519-920538 Msa1043080:intron 45.0%
! ATTCAGGTAGTGGTCTAGCT+TGG + chr7_2:920827-920846 None:intergenic 45.0%
!! GCGCCATTGTTTTTCAGTGA+AGG + chr7_2:921186-921205 None:intergenic 45.0%
!! AGAAATAAATATTTATAATT+AGG - chr7_2:916620-916639 Msa1043080:intron 5.0%
!!! TTATATTTAATTATTGTTTT+TGG - chr7_2:916918-916937 Msa1043080:intron 5.0%
GTTACGTCGAAGAAGCCGAA+AGG - chr7_2:917654-917673 Msa1043080:intron 50.0%
ATTCCACGCAGTCAGCACAA+TGG - chr7_2:918430-918449 Msa1043080:intron 50.0%
GGTGACTGCTGTATCGAGAT+TGG - chr7_2:918451-918470 Msa1043080:intron 50.0%
GTCAACACATCGGTGGTCAT+TGG + chr7_2:918554-918573 None:intergenic 50.0%
TCACACAGTCAACACATCGG+TGG + chr7_2:918561-918580 None:intergenic 50.0%
AACTAGCAAGAAGGAACCGC+CGG - chr7_2:918715-918734 Msa1043080:CDS 50.0%
CGCGAAGCAGACGAATCAAT+AGG + chr7_2:919694-919713 None:intergenic 50.0%
ACCATACAGCCGGTCCTAAA+TGG - chr7_2:919716-919735 Msa1043080:CDS 50.0%
ATTTCAACACTCGCACCACG+TGG + chr7_2:920118-920137 None:intergenic 50.0%
CTTGAACCACGAGTCAGTGT+CGG - chr7_2:920947-920966 Msa1043080:intron 50.0%
GGAGGATGATGTGCCAAGAT+AGG + chr7_2:921234-921253 None:intergenic 50.0%
!! TCACCATTGTGCTGACTGCG+TGG + chr7_2:918436-918455 None:intergenic 55.0%
GCTTCGCGTAACCATACAGC+CGG - chr7_2:919706-919725 Msa1043080:CDS 55.0%
! GCCATTTAGGACCGGCTGTA+TGG + chr7_2:919720-919739 None:intergenic 55.0%
! GAGCAAGCGCCATTTAGGAC+CGG + chr7_2:919728-919747 None:intergenic 55.0%
CCAGAGAGCAAGCGCCATTT+AGG + chr7_2:919733-919752 None:intergenic 55.0%
CCTAAATGGCGCTTGCTCTC+TGG - chr7_2:919730-919749 Msa1043080:CDS 55.0%
!! AAGAGTGTTTGGAACCGCGG+TGG - chr7_2:920080-920099 Msa1043080:intron 55.0%
! AGAGTGTTTGGAACCGCGGT+GGG - chr7_2:920081-920100 Msa1043080:intron 55.0%
!! AAGTAGCCGACACTGACTCG+TGG + chr7_2:920956-920975 None:intergenic 55.0%
! GAGTGTTTGGAACCGCGGTG+GGG - chr7_2:920082-920101 Msa1043080:intron 60.0%
! AGTGTTTGGAACCGCGGTGG+GGG - chr7_2:920083-920102 Msa1043080:intron 60.0%
TGGGGGATGCTCTCACCACG+TGG - chr7_2:920100-920119 Msa1043080:intron 65.0%
!! GGTGAGAGCATCCCCCACCG+CGG + chr7_2:920097-920116 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 916222 921289 916222 ID=Msa1043080;Name=Msa1043080
chr7_2 mRNA 916222 921289 916222 ID=Msa1043080-mRNA-1;Parent=Msa1043080;Name=Msa1043080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=71|0.87|0.88|1|1|1|9|0|523
chr7_2 exon 916222 916329 916222 ID=Msa1043080-mRNA-1:exon:166;Parent=Msa1043080-mRNA-1
chr7_2 exon 916624 916737 916624 ID=Msa1043080-mRNA-1:exon:165;Parent=Msa1043080-mRNA-1
chr7_2 exon 916971 917036 916971 ID=Msa1043080-mRNA-1:exon:164;Parent=Msa1043080-mRNA-1
chr7_2 exon 917133 917208 917133 ID=Msa1043080-mRNA-1:exon:163;Parent=Msa1043080-mRNA-1
chr7_2 exon 917756 917830 917756 ID=Msa1043080-mRNA-1:exon:162;Parent=Msa1043080-mRNA-1
chr7_2 exon 917947 918002 917947 ID=Msa1043080-mRNA-1:exon:161;Parent=Msa1043080-mRNA-1
chr7_2 exon 918466 918831 918466 ID=Msa1043080-mRNA-1:exon:160;Parent=Msa1043080-mRNA-1
chr7_2 exon 919313 919954 919313 ID=Msa1043080-mRNA-1:exon:159;Parent=Msa1043080-mRNA-1
chr7_2 exon 921150 921289 921150 ID=Msa1043080-mRNA-1:exon:158;Parent=Msa1043080-mRNA-1
chr7_2 five_prime_UTR 921219 921289 921219 ID=Msa1043080-mRNA-1:five_prime_utr;Parent=Msa1043080-mRNA-1
chr7_2 CDS 921150 921218 921150 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 919313 919954 919313 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 918466 918831 918466 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 917947 918002 917947 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 917756 917830 917756 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 917133 917208 917133 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 916971 917036 916971 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 916624 916737 916624 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
chr7_2 CDS 916222 916329 916222 ID=Msa1043080-mRNA-1:cds;Parent=Msa1043080-mRNA-1
Gene Sequence

>Msa1043080

ATGGGAGACTCTGCTTGTCTCATGCAACCATTTTGTTATGCTTCTGGAATTTCCAATGATTCCAATCAGAACAATACAAATCATGCACTTGGACAATCAATCTCATTTGGAAGGTTCATGTCAGAGTCACTAGCATGGGAGAAATGGTCAAGTTTCTCTCACAACCGTTACGTCGAAGAAGCCGAAAGGTATTCAAAACCAGGTTCAGTTGCACAGAAGAAAGCTTTCTTTGAAGCTCACTACAAGAAACTTGCTGCTCAAAAAGCAGCTGCATTGCTTGAACAACAAAACAATGCTGCTTCACAAAGCAATGTCGATGGTAAACAAGATAACGATGAAAACAATGATTCGCAGAAAAGTTCAAAGTATGAAGTGGTTGTTAAGGAAGAACAAGATGATGCAAAGGTTTTGAGTCATGATTTAGATTCAAATATGGAGCAATGCAGTGTATCTGAAAGTAACAATGTTGTTTTAAGGAATTCAATGATGGTTGAATTGCAAAAGAGGCTTGAAAATGTTGATACACTTCAAGAGCAGAGTGAAAAGCTTTGTCGAACACCTCCAGTCATGACACCAATATTGGAAAAAGCAGTTGTTTTAAGGAATTCATTAAGGGATGAACTTCGAAAAGAAGATGAAAATGTCGATACGCTTCAAGAGCAAAGTGAAAAGCTTAGTGCAACACCTCCAATCATGACACCAATATTGAAGCAGGTTTCTGGCATTGATCAAGAAGTTTCGGCATCAACTAGCAAGAAGGAACCGCCGGTTTCTTCCTTCAAGTTGATAAAGTTTAATGGAGCCTCCAAGTTCACCACTACTACACCTGTTAAATTTACTGCTACCATTTCTTCCAAAATAGATAACTTTGCTACTCCAATGAGCAACAATAGGCCTTCTGCATTAAGCAATGCAGATATAAAGAGACCAACTCCAAAGAAAGTAAATTTTACACCTATTAGAGAATTTAATAGATTGACTGCATCAGTGATGAGGAGATTTGAAAATACAAGAGTTGGTGCTTCTTCTTCCAAGGCTTCAAAGGATAGCTTGACTCCTCTAAAAACTCCAACTATGGCTTCTAAGGAGATGCAAAAGCACTCATCATTGACTCCATTAACAGAAAATAACAGGAACAAAACACCTATTGATTCGTCTGCTTCGCGTAACCATACAGCCGGTCCTAAATGGCGCTTGCTCTCTGGAGAAAACAAAATGAGATCACCAATTATATCATCGCCTTTCAGCTTGAGGACAGAAGAAAGGGCTGCAAGAAGAAAGAAGAAACTGGAAGAAAAGTTCAATGCTAATGAAGAACAAAAAGTGCAGCAGCCGCATGAAAAATTCAAGGAGAAAACAGGGAGCGAGATTAGAAGAAAACTGCGCCAAAGCTTTTGCTTCCAAGCTAGACCACTACCTGAATTTTACAAGGAAAGGAAAGCATCAAATATTGAAACAAGAAAGACCTTCACTGAAAAACAATGGCGCCAAGAATTTCATTGCAAAGAATGGTCCTATCTTGGCACATCATCCTCCGACTTCAAATTCAATGAAGATTATTACAGCTCATGA

Protein sequence

>Msa1043080

MGDSACLMQPFCYASGISNDSNQNNTNHALGQSISFGRFMSESLAWEKWSSFSHNRYVEEAERYSKPGSVAQKKAFFEAHYKKLAAQKAAALLEQQNNAASQSNVDGKQDNDENNDSQKSSKYEVVVKEEQDDAKVLSHDLDSNMEQCSVSESNNVVLRNSMMVELQKRLENVDTLQEQSEKLCRTPPVMTPILEKAVVLRNSLRDELRKEDENVDTLQEQSEKLSATPPIMTPILKQVSGIDQEVSASTSKKEPPVSSFKLIKFNGASKFTTTTPVKFTATISSKIDNFATPMSNNRPSALSNADIKRPTPKKVNFTPIREFNRLTASVMRRFENTRVGASSSKASKDSLTPLKTPTMASKEMQKHSSLTPLTENNRNKTPIDSSASRNHTAGPKWRLLSGENKMRSPIISSPFSLRTEERAARRKKKLEEKFNANEEQKVQQPHEKFKEKTGSEIRRKLRQSFCFQARPLPEFYKERKASNIETRKTFTEKQWRQEFHCKEWSYLGTSSSDFKFNEDYYSS*