AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0942810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942810 MtrunA17_Chr6g0459511 98.211 559 7 2 1 557 1 558 0.0 1123
Msa0942810 MtrunA17_Chr3g0116121 52.688 558 226 12 7 553 2 532 0.0 538
Msa0942810 MtrunA17_Chr4g0057611 52.591 521 227 6 35 554 27 528 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942810 AT5G14170.1 70.324 556 140 5 3 556 1 533 0.0 743
Msa0942810 AT3G01890.1 70.258 427 105 7 127 550 51 458 0.0 587

Find 188 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCTTCAGAAAGTATT+TGG 0.145085 6_3:+18158294 Msa0942810:CDS
CAGAATCAGGTTGGTGGTTT+AGG 0.152862 6_3:+18157448 Msa0942810:CDS
CTTGAGCTTGAGCTTGAGCC+TGG 0.177967 6_3:-18157258 None:intergenic
GAGAGAGAAAGAGATGAATT+TGG 0.195499 6_3:-18156687 None:intergenic
GTTGGTGGTTTAGGGAATTT+AGG 0.201377 6_3:+18157457 Msa0942810:CDS
CTTGAGCTTGAGCCTGGGCT+TGG 0.215614 6_3:-18157252 None:intergenic
TCTTAGGTATCGTGCGAATT+TGG 0.236171 6_3:-18157834 None:intergenic
TAGAAAGAAGGTTGATATTC+AGG 0.242285 6_3:+18157744 Msa0942810:CDS
ATTGAAATGCATAGCATAAA+AGG 0.247724 6_3:-18159742 None:intergenic
GTTTACCTCGATCTGGATTC+AGG 0.267662 6_3:-18156892 None:intergenic
AGGAGGCGGGCATTCTTTCT+TGG 0.270814 6_3:+18158579 Msa0942810:CDS
GGCTCGGCATTTGGCTTCTT+AGG 0.274246 6_3:-18157850 None:intergenic
AGAATCAGGTTGGTGGTTTA+GGG 0.294649 6_3:+18157449 Msa0942810:CDS
TCTAGGTATCACGTGCTTCC+TGG 0.306640 6_3:-18159684 None:intergenic
CCCTCCACCACCTATAGTTC+TGG 0.307931 6_3:+18158371 Msa0942810:CDS
TTGAGCTTGAGCCTGGGCTT+GGG 0.311548 6_3:-18157251 None:intergenic
AAGGGAGTTGTCTGCACTAT+TGG 0.318030 6_3:+18158476 Msa0942810:CDS
TGATAATTTATCAGATTGTT+AGG 0.319353 6_3:+18159875 Msa0942810:three_prime_UTR
TTATGATTTAGGTACCCTTT+TGG 0.319407 6_3:+18157007 Msa0942810:intron
AACAAAGGGGTAAGATGAAT+TGG 0.327582 6_3:-18156781 None:intergenic
TATAGTTCAAGCACAAAATA+AGG 0.327992 6_3:+18157333 Msa0942810:CDS
AGCCTCTTCAGAAAGTATTT+GGG 0.344612 6_3:+18158295 Msa0942810:CDS
CACGTCGGAGGCTCGGCATT+TGG 0.346531 6_3:-18157859 None:intergenic
GGTGCTTCTTCATCATCCTT+TGG 0.346778 6_3:+18157175 Msa0942810:CDS
TTAATTTGTGTACAATATCT+TGG 0.349286 6_3:+18160006 Msa0942810:three_prime_UTR
CTTTCCTGCATTGGTTTCTC+AGG 0.350339 6_3:-18157643 None:intergenic
CTTGAAAACCAGCAGCCATT+TGG 0.355992 6_3:-18157282 None:intergenic
GAAGCACCAATGCCTTTAGA+AGG 0.357702 6_3:-18157160 None:intergenic
CAAGAATTATTGCTGCGATA+TGG 0.358007 6_3:+18158211 Msa0942810:CDS
TGAACTACTCCCGGCTGATC+AGG 0.367241 6_3:-18157925 None:intergenic
CATATCGCAGCAATAATTCT+TGG 0.368476 6_3:-18158210 None:intergenic
TTGGTGGTTTAGGGAATTTA+GGG 0.373516 6_3:+18157458 Msa0942810:CDS
TTGAAAACCAGCAGCCATTT+GGG 0.374986 6_3:-18157281 None:intergenic
GTGAAGCTTTAGCTAGGGTT+TGG 0.375434 6_3:-18156643 None:intergenic
ACAAAGGGGTAAGATGAATT+GGG 0.378377 6_3:-18156780 None:intergenic
TTCTTCCTCCGTGCAGCAGC+AGG 0.379617 6_3:-18157610 None:intergenic
TCATCATCCTTTGGTAATGC+TGG 0.383448 6_3:+18157184 Msa0942810:CDS
TGAAAATTGAGAAGAGAAAG+TGG 0.384973 6_3:-18156747 None:intergenic
GTTGAGTCTTAATCAGAATC+AGG 0.385261 6_3:+18157435 Msa0942810:CDS
GGATGAATGATTTCAGAATA+AGG 0.387464 6_3:-18159721 None:intergenic
CTTTAGCTAGGGTTTGGAAA+AGG 0.394190 6_3:-18156637 None:intergenic
GAAGATAGTTGGGAGGGTAT+TGG 0.394511 6_3:+18157888 Msa0942810:CDS
TCGTCGTCTATGTCTACGCC+TGG 0.404173 6_3:+18157487 Msa0942810:CDS
ATAATCAATCATAGACCAAA+AGG 0.404488 6_3:-18157022 None:intergenic
TTGAGCTTGAGCTTGAGCCT+GGG 0.407071 6_3:-18157257 None:intergenic
ATCCAAATCTAATCAAGAAA+AGG 0.407307 6_3:-18157106 None:intergenic
TAATTTGTGTACAATATCTT+GGG 0.408090 6_3:+18160007 Msa0942810:three_prime_UTR
GTTTGTAGACATAGAATTAG+AGG 0.423500 6_3:-18157212 None:intergenic
GAAAGTATTTGGGGAAGAAA+AGG 0.423540 6_3:+18158305 Msa0942810:CDS
CACAAATACGGCATGGAAGA+TGG 0.426654 6_3:-18159799 None:intergenic
GCAGACAACTCCCTTTGAAT+AGG 0.427857 6_3:-18158468 None:intergenic
AGTAGCTCATGCTCAGCTTC+AGG 0.429379 6_3:+18157393 Msa0942810:CDS
TTAAAGAAAGCCGAGAACTT+TGG 0.432630 6_3:-18157967 None:intergenic
ATGCATTTCAATATAAATCA+AGG 0.432834 6_3:+18159753 Msa0942810:three_prime_UTR
CAGGCTCATTTGCAAGCTCA+AGG 0.433801 6_3:+18157412 Msa0942810:CDS
GAAAATCCAACCGGCCTCAT+AGG 0.434394 6_3:-18157544 None:intergenic
AAGTAATGTTTACCTCGATC+TGG 0.435460 6_3:-18156899 None:intergenic
TTTAGCTAGGGTTTGGAAAA+GGG 0.437818 6_3:-18156636 None:intergenic
GCAGCCACCCTTTCCTGCAT+TGG 0.440696 6_3:-18157652 None:intergenic
TGCGTATAAAGAGCAGATTC+CGG 0.443933 6_3:-18157682 None:intergenic
AGCTCAAGCTCAAGCCCAAA+TGG 0.443969 6_3:+18157267 Msa0942810:CDS
GAATACTGCTCCATAGCATA+TGG 0.456826 6_3:+18159821 Msa0942810:three_prime_UTR
TCAAAACCTTCTTGAGGAGC+AGG 0.460085 6_3:-18158063 None:intergenic
ATCTGATGCTCCAGAACTAT+AGG 0.460674 6_3:-18158381 None:intergenic
ACCGATGTATCCAAAGTTCT+CGG 0.461991 6_3:+18157957 Msa0942810:CDS
CCACACAATAGTGTTGTTCT+CGG 0.463598 6_3:-18158025 None:intergenic
AAGGCATTAATAAATTCTAC+TGG 0.468844 6_3:-18158615 None:intergenic
GGTGAAAGCTTAAACTTCTC+AGG 0.469046 6_3:-18158147 None:intergenic
CAACTAGTTGCGGTGCTCGC+AGG 0.469620 6_3:-18159846 None:intergenic
ATGGCTTCTTCTTCAATCAG+TGG 0.472593 6_3:+18156864 Msa0942810:five_prime_UTR
TCCAAATCTAATCAAGAAAA+GGG 0.473113 6_3:-18157105 None:intergenic
GCGTTTAGTTCTGAATGGTT+TGG 0.475659 6_3:-18156587 None:intergenic
CTATCGGGAAATAGTCCAGC+TGG 0.478886 6_3:+18158408 Msa0942810:CDS
TGCTCAAAGCTTACCATGGT+TGG 0.480015 6_3:-18158725 None:intergenic
TGGCGTTGACCCTGATCAGC+CGG 0.481582 6_3:+18157915 Msa0942810:CDS
CGTGGACTCTGAAGATAGTT+GGG 0.481652 6_3:+18157878 Msa0942810:CDS
CGATCACCTGCTCCTCAAGA+AGG 0.484816 6_3:+18158057 Msa0942810:CDS
TGCTGCACTTTCTAGAAAGA+AGG 0.485884 6_3:+18157732 Msa0942810:CDS
GATTTCAGAATAAGGAGCAC+TGG 0.489340 6_3:-18159713 None:intergenic
AACTCCCTTTGAATAGGAAA+AGG 0.491119 6_3:-18158462 None:intergenic
TAAGCTTTCACCAGCATTGA+CGG 0.492158 6_3:+18158158 Msa0942810:CDS
GTTTGATTGTAACACAATCA+TGG 0.492490 6_3:-18160081 None:intergenic
AGGAGCACTGGGACTTCTCT+AGG 0.495887 6_3:-18159701 None:intergenic
CTGAGAAACCAATGCAGGAA+AGG 0.496111 6_3:+18157644 Msa0942810:CDS
ACGTGGACTCTGAAGATAGT+TGG 0.500504 6_3:+18157877 Msa0942810:CDS
TAAGGCTCAGGCTCAAGCTC+AGG 0.501606 6_3:+18157351 Msa0942810:CDS
GGAGCATCACTTCCTGCAGC+GGG 0.501664 6_3:-18159663 None:intergenic
AATAACAACAACCCTTCTAA+AGG 0.502773 6_3:+18157148 Msa0942810:CDS
AGGGCAGTTTCCACAGTCAC+AGG 0.503395 6_3:+18157303 Msa0942810:CDS
TCAGATTGTTAGGAGAAAGA+TGG 0.506419 6_3:+18159885 Msa0942810:three_prime_UTR
CAGAGTCCACGTCGGAGGCT+CGG 0.506975 6_3:-18157866 None:intergenic
AGAGAAAGAGATGAATTTGG+AGG 0.507559 6_3:-18156684 None:intergenic
CCTTGATTGAATCTCAAAGC+AGG 0.511145 6_3:+18158634 Msa0942810:CDS
TTCTGAGGCGAAAATCCAAC+CGG 0.514583 6_3:-18157553 None:intergenic
AGGGATCTGAAAGCTGCAGC+TGG 0.516281 6_3:+18158654 Msa0942810:CDS
CTCGCAGGATCCATATGCTA+TGG 0.516894 6_3:-18159831 None:intergenic
TGAGAAACCAATGCAGGAAA+GGG 0.518820 6_3:+18157645 Msa0942810:CDS
TGGAGCAGTATTCACAAATA+CGG 0.519081 6_3:-18159811 None:intergenic
GAAGAGAAAGTGGTGAATTG+AGG 0.519565 6_3:-18156737 None:intergenic
GTTGGGAGGGTATTGGAAGA+TGG 0.520571 6_3:+18157895 Msa0942810:CDS
GTCCTTTGAAACCACCTATG+AGG 0.522585 6_3:+18157530 Msa0942810:CDS
AAGATGGTGAAGCTTTAGCT+AGG 0.522629 6_3:-18156649 None:intergenic
TCGTAACAAGCACTCCCAGC+TGG 0.524770 6_3:-18158423 None:intergenic
TTGAATCGCAAACCCGCTGC+AGG 0.527757 6_3:+18159651 Msa0942810:CDS
GGAGCATCAGATCAAACTAT+CGG 0.529729 6_3:+18158392 Msa0942810:CDS
GATGAAGAGAGAGAAACAAA+GGG 0.530469 6_3:-18156795 None:intergenic
GCAAGAACTTCCGTCAATGC+TGG 0.532598 6_3:-18158168 None:intergenic
TTTGTGCTTGAACTATAGCA+TGG 0.533313 6_3:-18157327 None:intergenic
TTAGCTAGGGTTTGGAAAAG+GGG 0.533624 6_3:-18156635 None:intergenic
GCTCAAGCCCAAATGGCTGC+TGG 0.535101 6_3:+18157274 Msa0942810:CDS
TCCAGAACTATAGGTGGTGG+AGG 0.535658 6_3:-18158372 None:intergenic
TCCACGAGCATCGTAGGAGG+CGG 0.535807 6_3:+18158565 Msa0942810:CDS
TCCCCAAATACTTTCTGAAG+AGG 0.537915 6_3:-18158297 None:intergenic
CTTAATCAGAATCAGGTTGG+TGG 0.541176 6_3:+18157442 Msa0942810:CDS
TGCTCCAGAACTATAGGTGG+TGG 0.541684 6_3:-18158375 None:intergenic
TCAAGCACAAAATAAGGCTC+AGG 0.542804 6_3:+18157339 Msa0942810:CDS
ATAGCATGGGCCTGTGACTG+TGG 0.543201 6_3:-18157313 None:intergenic
GTGAAGCGTTTAGTTCTGAA+TGG 0.546492 6_3:-18156592 None:intergenic
TGATGAAGAGAGAGAAACAA+AGG 0.546742 6_3:-18156796 None:intergenic
TTTGAAACCACCTATGAGGC+CGG 0.549023 6_3:+18157534 Msa0942810:CDS
GGCGTTGACCCTGATCAGCC+GGG 0.550072 6_3:+18157916 Msa0942810:CDS
GAGCATCAGATCAAACTATC+GGG 0.554086 6_3:+18158393 Msa0942810:CDS
AACAACCCTTCTAAAGGCAT+TGG 0.556425 6_3:+18157154 Msa0942810:CDS
CACACAATAGTGTTGTTCTC+GGG 0.556965 6_3:-18158024 None:intergenic
CCTGCTTTGAGATTCAATCA+AGG 0.560426 6_3:-18158634 None:intergenic
TTTCTCACCGTTGAGACCGA+TGG 0.560848 6_3:+18157579 Msa0942810:CDS
TGGAGCATCACTTCCTGCAG+CGG 0.562803 6_3:-18159664 None:intergenic
CAAAGGGGTAAGATGAATTG+GGG 0.563040 6_3:-18156779 None:intergenic
CCACGAGCATCGTAGGAGGC+GGG 0.563419 6_3:+18158566 Msa0942810:CDS
TTGTGCTTGAACTATAGCAT+GGG 0.564247 6_3:-18157326 None:intergenic
AGGCTCATTTGCAAGCTCAA+GGG 0.569279 6_3:+18157413 Msa0942810:CDS
GAACTACTCCCGGCTGATCA+GGG 0.569681 6_3:-18157924 None:intergenic
TATGGCACTATGTGAAGGCT+AGG 0.572101 6_3:+18158229 Msa0942810:CDS
ATCAGCAATGCAACTAGTTG+CGG 0.573422 6_3:-18159856 None:intergenic
TTCACTTCAAAACCTTCTTG+AGG 0.576166 6_3:-18158069 None:intergenic
CCCGCCTCCTACGATGCTCG+TGG 0.579778 6_3:-18158566 None:intergenic
AACTAACGCCTGCTGCTGCA+CGG 0.579865 6_3:+18157602 Msa0942810:CDS
CAACAACAACTACAGAAACA+TGG 0.580594 6_3:-18159921 None:intergenic
GCAGCAGGCGTTAGTTCCAT+CGG 0.581426 6_3:-18157595 None:intergenic
TCTCGAGTTTGAGTCTCGTG+TGG 0.582039 6_3:+18157708 Msa0942810:CDS
TGCATTTCAATATAAATCAA+GGG 0.583096 6_3:+18159754 Msa0942810:three_prime_UTR
TTGTTCTCGGGATATAGCCT+CGG 0.583394 6_3:-18158012 None:intergenic
TAATCAATCATAGACCAAAA+GGG 0.587342 6_3:-18157021 None:intergenic
GCTGCAGGAAGTGATGCTCC+AGG 0.587547 6_3:+18159666 Msa0942810:CDS
CGTCGTCTATGTCTACGCCT+GGG 0.588174 6_3:+18157488 Msa0942810:CDS
TTTGTAGACATAGAATTAGA+GGG 0.588228 6_3:-18157211 None:intergenic
GCCTCTTCAGAAAGTATTTG+GGG 0.589482 6_3:+18158296 Msa0942810:CDS
GAGGAAGATGAAGATGAAGA+TGG 0.591033 6_3:-18156665 None:intergenic
AGTCTTAATCAGAATCAGGT+TGG 0.591722 6_3:+18157439 Msa0942810:CDS
AGATGGTGAAGCTTTAGCTA+GGG 0.592052 6_3:-18156648 None:intergenic
GACGACTTCTGAACTACTCC+CGG 0.592418 6_3:-18157934 None:intergenic
GACTCTGAAGATAGTTGGGA+GGG 0.595717 6_3:+18157882 Msa0942810:CDS
GGCCTCATAGGTGGTTTCAA+AGG 0.597547 6_3:-18157532 None:intergenic
TAATCATTACTTTGGATCCG+AGG 0.599509 6_3:+18157995 Msa0942810:CDS
AAATCCACGAGCATCGTAGG+AGG 0.600190 6_3:+18158562 Msa0942810:CDS
GCTTCCTGAGAAACCAATGC+AGG 0.601644 6_3:+18157639 Msa0942810:CDS
CCGAGAACAACACTATTGTG+TGG 0.601969 6_3:+18158025 Msa0942810:CDS
GCCGAGAACTTTGGATACAT+CGG 0.603059 6_3:-18157958 None:intergenic
ATTTCAGAATAAGGAGCACT+GGG 0.606264 6_3:-18159712 None:intergenic
ACATGTGATGAAGCGATATG+TGG 0.611068 6_3:+18158528 Msa0942810:CDS
AAGCACCAATGCCTTTAGAA+GGG 0.611789 6_3:-18157159 None:intergenic
CGTTTCGCACTACCGCTCCC+AGG 0.612556 6_3:-18157505 None:intergenic
AATCCAACCGGCCTCATAGG+TGG 0.616407 6_3:-18157541 None:intergenic
CAGTATTCACAAATACGGCA+TGG 0.619475 6_3:-18159806 None:intergenic
CGAGAACAACACTATTGTGT+GGG 0.622889 6_3:+18158026 Msa0942810:CDS
CTTGATTGAATCTCAAAGCA+GGG 0.625702 6_3:+18158635 Msa0942810:CDS
GAGTGCTTGTTACGATGCAA+TGG 0.627382 6_3:+18158431 Msa0942810:CDS
GGTGGTGGAGGGAACAAATG+TGG 0.627777 6_3:-18158360 None:intergenic
GTTAGTTCCATCGGTCTCAA+CGG 0.632927 6_3:-18157586 None:intergenic
AATCAAAGAATCCACCATTG+TGG 0.634172 6_3:-18159948 None:intergenic
ATCTTCAGAGTCCACGTCGG+AGG 0.634474 6_3:-18157871 None:intergenic
TCTATGTCTACGCCTGGGAG+CGG 0.636904 6_3:+18157493 Msa0942810:CDS
TCTTGTTACTGACACAACAC+AGG 0.640875 6_3:+18160033 Msa0942810:three_prime_UTR
TATCGGGAAATAGTCCAGCT+GGG 0.641484 6_3:+18158409 Msa0942810:CDS
GAAACCAATGCAGGAAAGGG+TGG 0.642837 6_3:+18157648 Msa0942810:CDS
TGCGATATGGCACTATGTGA+AGG 0.645164 6_3:+18158224 Msa0942810:CDS
ATGAAGAGAGAGAAACAAAG+GGG 0.652210 6_3:-18156794 None:intergenic
GTTGTTGTTGTAGTCCACAA+TGG 0.653502 6_3:+18159934 Msa0942810:three_prime_UTR
GTTGTTGTAGTCCACAATGG+TGG 0.654023 6_3:+18159937 Msa0942810:three_prime_UTR
CCAGAACTATAGGTGGTGGA+GGG 0.655511 6_3:-18158371 None:intergenic
GGACTCTGAAGATAGTTGGG+AGG 0.655821 6_3:+18157881 Msa0942810:CDS
AACGGTGAGAAATTATTCTG+AGG 0.664992 6_3:-18157568 None:intergenic
TGATGCTCCAGAACTATAGG+TGG 0.665812 6_3:-18158378 None:intergenic
GGGCATTCCAGCATTACCAA+AGG 0.666091 6_3:-18157191 None:intergenic
GGGAGCGGTAGTGCGAAACG+TGG 0.679453 6_3:+18157508 Msa0942810:CDS
ATCTTCCTGAATCCAGATCG+AGG 0.697371 6_3:+18156887 Msa0942810:five_prime_UTR
TAACGCCTGCTGCTGCACGG+AGG 0.741030 6_3:+18157605 Msa0942810:CDS
ACTATCTTCAGAGTCCACGT+CGG 0.774690 6_3:-18157874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAGTAATCATTACTT+TGG + chr6_3:18157987-18158006 Msa0942810:CDS 15.0%
!! AAAATAAAATAAAACAATGG+AGG - chr6_3:18158772-18158791 None:intergenic 15.0%
!! TAAAAATTCTGTTACCAAAA+TGG - chr6_3:18156959-18156978 None:intergenic 20.0%
!!! ACTTGAATTTGTTATGATTT+AGG + chr6_3:18156996-18157015 Msa0942810:intron 20.0%
!!! AAAGTTAAGATTTTTTCATC+TGG + chr6_3:18157052-18157071 Msa0942810:five_prime_UTR 20.0%
!!! AAGTTAAGATTTTTTCATCT+GGG + chr6_3:18157053-18157072 Msa0942810:five_prime_UTR 20.0%
!!! TCTTGAAGATTTGAATTTTA+GGG + chr6_3:18157076-18157095 Msa0942810:five_prime_UTR 20.0%
!!! AATTAATTTGCAATCAAAGA+TGG - chr6_3:18158830-18158849 None:intergenic 20.0%
!! TGTCAAAAAGTTGTTAAAAA+AGG - chr6_3:18158928-18158947 None:intergenic 20.0%
!!! TATTATTTTTGACCAATCAA+AGG + chr6_3:18159001-18159020 Msa0942810:intron 20.0%
!!! TACAACTTTTATGACAATTT+TGG - chr6_3:18159035-18159054 None:intergenic 20.0%
!! AACTTAGTATATATGTTAGT+TGG + chr6_3:18159187-18159206 Msa0942810:intron 20.0%
!!! TTCAAATGTTTTAAAATGCA+TGG + chr6_3:18159450-18159469 Msa0942810:intron 20.0%
!!! TCTGTATTTTCTATGTTTTA+TGG + chr6_3:18159526-18159545 Msa0942810:intron 20.0%
!! ATGCATTTCAATATAAATCA+AGG + chr6_3:18159753-18159772 Msa0942810:three_prime_UTR 20.0%
!! TGCATTTCAATATAAATCAA+GGG + chr6_3:18159754-18159773 Msa0942810:three_prime_UTR 20.0%
!! TGATAATTTATCAGATTGTT+AGG + chr6_3:18159875-18159894 Msa0942810:three_prime_UTR 20.0%
!! CATCATTAAAAATTTGTACT+AGG + chr6_3:18159978-18159997 Msa0942810:three_prime_UTR 20.0%
!! ATTAAAAATTTGTACTAGGA+AGG + chr6_3:18159982-18160001 Msa0942810:three_prime_UTR 20.0%
!!! TTAATTTGTGTACAATATCT+TGG + chr6_3:18160006-18160025 Msa0942810:three_prime_UTR 20.0%
!!! TAATTTGTGTACAATATCTT+GGG + chr6_3:18160007-18160026 Msa0942810:three_prime_UTR 20.0%
!!! GATTTTTTTTGTGTGAATCA+GGG - chr6_3:18156827-18156846 None:intergenic 25.0%
!!! TGATTTTTTTTGTGTGAATC+AGG - chr6_3:18156828-18156847 None:intergenic 25.0%
! TAATCAATCATAGACCAAAA+GGG - chr6_3:18157024-18157043 None:intergenic 25.0%
! ATAATCAATCATAGACCAAA+AGG - chr6_3:18157025-18157044 None:intergenic 25.0%
!! GTCTTGAAGATTTGAATTTT+AGG + chr6_3:18157075-18157094 Msa0942810:five_prime_UTR 25.0%
! TCCAAATCTAATCAAGAAAA+GGG - chr6_3:18157108-18157127 None:intergenic 25.0%
! ATCCAAATCTAATCAAGAAA+AGG - chr6_3:18157109-18157128 None:intergenic 25.0%
! TTTGTAGACATAGAATTAGA+GGG - chr6_3:18157214-18157233 None:intergenic 25.0%
! TATAGTTCAAGCACAAAATA+AGG + chr6_3:18157333-18157352 Msa0942810:CDS 25.0%
!! ATATTCCTTTTCCTATTCAA+AGG + chr6_3:18158457-18158476 Msa0942810:CDS 25.0%
!! TATTCCTTTTCCTATTCAAA+GGG + chr6_3:18158458-18158477 Msa0942810:CDS 25.0%
!! AAGGCATTAATAAATTCTAC+TGG - chr6_3:18158618-18158637 None:intergenic 25.0%
! AACTAAGACAATATATGGAA+GGG - chr6_3:18159149-18159168 None:intergenic 25.0%
! TCAACAACTAAGACAATATA+TGG - chr6_3:18159154-18159173 None:intergenic 25.0%
! ATATATTGTCTTAGTTGTTG+AGG + chr6_3:18159153-18159172 Msa0942810:intron 25.0%
! TTATTCTGCTATATGCTATT+TGG + chr6_3:18159309-18159328 Msa0942810:intron 25.0%
!!! GATTCTAGTCTTATTTTAAC+TGG - chr6_3:18159500-18159519 None:intergenic 25.0%
! ATTGAAATGCATAGCATAAA+AGG - chr6_3:18159745-18159764 None:intergenic 25.0%
!!! TGAATGGTTTGGTTTTGAAA+CGG - chr6_3:18156579-18156598 None:intergenic 30.0%
TGAAAATTGAGAAGAGAAAG+TGG - chr6_3:18156750-18156769 None:intergenic 30.0%
! TCACATTTTTCACTTCTTCA+TGG + chr6_3:18156845-18156864 Msa0942810:five_prime_UTR 30.0%
! GATTTTCGTTCTTTCCATTT+TGG + chr6_3:18156942-18156961 Msa0942810:intron 30.0%
! TTATGATTTAGGTACCCTTT+TGG + chr6_3:18157007-18157026 Msa0942810:intron 30.0%
! ACCCTTTTCTTGATTAGATT+TGG + chr6_3:18157104-18157123 Msa0942810:five_prime_UTR 30.0%
AATAACAACAACCCTTCTAA+AGG + chr6_3:18157148-18157167 Msa0942810:CDS 30.0%
GTTTGTAGACATAGAATTAG+AGG - chr6_3:18157215-18157234 None:intergenic 30.0%
!! TAGAAAGAAGGTTGATATTC+AGG + chr6_3:18157744-18157763 Msa0942810:CDS 30.0%
GATCACAGTGAAAAAAAGAA+GGG - chr6_3:18158275-18158294 None:intergenic 30.0%
TGATCACAGTGAAAAAAAGA+AGG - chr6_3:18158276-18158295 None:intergenic 30.0%
TCAAAGATGGTAGCAAATAA+AGG - chr6_3:18158817-18158836 None:intergenic 30.0%
GTGATATTTGTACAACTCTT+TGG - chr6_3:18159058-18159077 None:intergenic 30.0%
!!! TTCTTTTTTGAAATGGGGAA+GGG - chr6_3:18159123-18159142 None:intergenic 30.0%
ACTAAGACAATATATGGAAG+GGG - chr6_3:18159148-18159167 None:intergenic 30.0%
CAACTAAGACAATATATGGA+AGG - chr6_3:18159150-18159169 None:intergenic 30.0%
ATATATGTTAGTTGGACTGT+TGG + chr6_3:18159195-18159214 Msa0942810:intron 30.0%
!! CACAAAGTATTGGCAAATAT+CGG + chr6_3:18159332-18159351 Msa0942810:intron 30.0%
AATGAAATCCTATCATACCA+TGG - chr6_3:18159431-18159450 None:intergenic 30.0%
GGATGAATGATTTCAGAATA+AGG - chr6_3:18159724-18159743 None:intergenic 30.0%
GTTTGATTGTAACACAATCA+TGG - chr6_3:18160084-18160103 None:intergenic 30.0%
TTTAGCTAGGGTTTGGAAAA+GGG - chr6_3:18156639-18156658 None:intergenic 35.0%
AGAGAAAGAGATGAATTTGG+AGG - chr6_3:18156687-18156706 None:intergenic 35.0%
GAGAGAGAAAGAGATGAATT+TGG - chr6_3:18156690-18156709 None:intergenic 35.0%
ACAAAGGGGTAAGATGAATT+GGG - chr6_3:18156783-18156802 None:intergenic 35.0%
AACAAAGGGGTAAGATGAAT+TGG - chr6_3:18156784-18156803 None:intergenic 35.0%
ATGAAGAGAGAGAAACAAAG+GGG - chr6_3:18156797-18156816 None:intergenic 35.0%
GATGAAGAGAGAGAAACAAA+GGG - chr6_3:18156798-18156817 None:intergenic 35.0%
TGATGAAGAGAGAGAAACAA+AGG - chr6_3:18156799-18156818 None:intergenic 35.0%
! TTTTTGTGTGAATCAGGGTT+TGG - chr6_3:18156822-18156841 None:intergenic 35.0%
AAGTAATGTTTACCTCGATC+TGG - chr6_3:18156902-18156921 None:intergenic 35.0%
TTGTGCTTGAACTATAGCAT+GGG - chr6_3:18157329-18157348 None:intergenic 35.0%
TTTGTGCTTGAACTATAGCA+TGG - chr6_3:18157330-18157349 None:intergenic 35.0%
GTTGAGTCTTAATCAGAATC+AGG + chr6_3:18157435-18157454 Msa0942810:CDS 35.0%
AGTCTTAATCAGAATCAGGT+TGG + chr6_3:18157439-18157458 Msa0942810:CDS 35.0%
! TTGGTGGTTTAGGGAATTTA+GGG + chr6_3:18157458-18157477 Msa0942810:CDS 35.0%
AACGGTGAGAAATTATTCTG+AGG - chr6_3:18157571-18157590 None:intergenic 35.0%
! AGAGTTTTCTGAATACAAGG+CGG - chr6_3:18157784-18157803 None:intergenic 35.0%
! CGAAGAGTTTTCTGAATACA+AGG - chr6_3:18157787-18157806 None:intergenic 35.0%
TTAAAGAAAGCCGAGAACTT+TGG - chr6_3:18157970-18157989 None:intergenic 35.0%
TAATCATTACTTTGGATCCG+AGG + chr6_3:18157995-18158014 Msa0942810:CDS 35.0%
TTCACTTCAAAACCTTCTTG+AGG - chr6_3:18158072-18158091 None:intergenic 35.0%
!!! AAGAAGGTTTTGAAGTGAAG+AGG + chr6_3:18158073-18158092 Msa0942810:CDS 35.0%
!!! GTTTTGAAGTGAAGAGGAAA+GGG + chr6_3:18158079-18158098 Msa0942810:CDS 35.0%
!!! TTTTGAAGTGAAGAGGAAAG+GGG + chr6_3:18158080-18158099 Msa0942810:CDS 35.0%
! GAAAGGGGATAAAGAGTTTT+CGG + chr6_3:18158095-18158114 Msa0942810:CDS 35.0%
CATATCGCAGCAATAATTCT+TGG - chr6_3:18158213-18158232 None:intergenic 35.0%
CAAGAATTATTGCTGCGATA+TGG + chr6_3:18158211-18158230 Msa0942810:CDS 35.0%
GAAAAAAAGAAGGGTCGTTA+GGG - chr6_3:18158266-18158285 None:intergenic 35.0%
TGAAAAAAAGAAGGGTCGTT+AGG - chr6_3:18158267-18158286 None:intergenic 35.0%
!! AGCCTCTTCAGAAAGTATTT+GGG + chr6_3:18158295-18158314 Msa0942810:CDS 35.0%
!! GAAAGTATTTGGGGAAGAAA+AGG + chr6_3:18158305-18158324 Msa0942810:CDS 35.0%
AACTCCCTTTGAATAGGAAA+AGG - chr6_3:18158465-18158484 None:intergenic 35.0%
CTTGATTGAATCTCAAAGCA+GGG + chr6_3:18158635-18158654 Msa0942810:CDS 35.0%
!!! CAGATTTTTTCAACCAACCA+TGG + chr6_3:18158712-18158731 Msa0942810:CDS 35.0%
GAGTCAATCACAATCAATTC+CGG - chr6_3:18158865-18158884 None:intergenic 35.0%
!! TTGGTTTTCTCTCCTTTGAT+TGG - chr6_3:18159016-18159035 None:intergenic 35.0%
!!! CTTCTTTTTTGAAATGGGGA+AGG - chr6_3:18159124-18159143 None:intergenic 35.0%
!!! GGGACTTCTTTTTTGAAATG+GGG - chr6_3:18159128-18159147 None:intergenic 35.0%
!!! GGGGACTTCTTTTTTGAAAT+GGG - chr6_3:18159129-18159148 None:intergenic 35.0%
!!! AGGGGACTTCTTTTTTGAAA+TGG - chr6_3:18159130-18159149 None:intergenic 35.0%
! TGCTATTTGGCACAAAGTAT+TGG + chr6_3:18159322-18159341 Msa0942810:intron 35.0%
TTGCAGGTCTTAGAAAATGA+TGG - chr6_3:18159391-18159410 None:intergenic 35.0%
TATCATACCATGGTCATACA+GGG - chr6_3:18159421-18159440 None:intergenic 35.0%
TATTGTTTGACAACATGAGC+AGG + chr6_3:18159604-18159623 Msa0942810:intron 35.0%
ATTGTTTGACAACATGAGCA+GGG + chr6_3:18159605-18159624 Msa0942810:intron 35.0%
!! ATTTCAGAATAAGGAGCACT+GGG - chr6_3:18159715-18159734 None:intergenic 35.0%
TGGAGCAGTATTCACAAATA+CGG - chr6_3:18159814-18159833 None:intergenic 35.0%
TCAGATTGTTAGGAGAAAGA+TGG + chr6_3:18159885-18159904 Msa0942810:three_prime_UTR 35.0%
CAACAACAACTACAGAAACA+TGG - chr6_3:18159924-18159943 None:intergenic 35.0%
AATCAAAGAATCCACCATTG+TGG - chr6_3:18159951-18159970 None:intergenic 35.0%
!! GCGTTTAGTTCTGAATGGTT+TGG - chr6_3:18156590-18156609 None:intergenic 40.0%
!! GTGAAGCGTTTAGTTCTGAA+TGG - chr6_3:18156595-18156614 None:intergenic 40.0%
TTAGCTAGGGTTTGGAAAAG+GGG - chr6_3:18156638-18156657 None:intergenic 40.0%
CTTTAGCTAGGGTTTGGAAA+AGG - chr6_3:18156640-18156659 None:intergenic 40.0%
! AGATGGTGAAGCTTTAGCTA+GGG - chr6_3:18156651-18156670 None:intergenic 40.0%
! AAGATGGTGAAGCTTTAGCT+AGG - chr6_3:18156652-18156671 None:intergenic 40.0%
GAGGAAGATGAAGATGAAGA+TGG - chr6_3:18156668-18156687 None:intergenic 40.0%
GAAGAGAAAGTGGTGAATTG+AGG - chr6_3:18156740-18156759 None:intergenic 40.0%
CAAAGGGGTAAGATGAATTG+GGG - chr6_3:18156782-18156801 None:intergenic 40.0%
ATGGCTTCTTCTTCAATCAG+TGG + chr6_3:18156864-18156883 Msa0942810:five_prime_UTR 40.0%
! AACAACCCTTCTAAAGGCAT+TGG + chr6_3:18157154-18157173 Msa0942810:CDS 40.0%
! AAGCACCAATGCCTTTAGAA+GGG - chr6_3:18157162-18157181 None:intergenic 40.0%
!! TCATCATCCTTTGGTAATGC+TGG + chr6_3:18157184-18157203 Msa0942810:CDS 40.0%
CTTGGGCTTGTGAAAAAACA+GGG - chr6_3:18157237-18157256 None:intergenic 40.0%
TTGAAAACCAGCAGCCATTT+GGG - chr6_3:18157284-18157303 None:intergenic 40.0%
!!! AAATGGCTGCTGGTTTTCAA+GGG + chr6_3:18157284-18157303 Msa0942810:CDS 40.0%
TCAAGCACAAAATAAGGCTC+AGG + chr6_3:18157339-18157358 Msa0942810:CDS 40.0%
!! CTTAATCAGAATCAGGTTGG+TGG + chr6_3:18157442-18157461 Msa0942810:CDS 40.0%
!! AGAATCAGGTTGGTGGTTTA+GGG + chr6_3:18157449-18157468 Msa0942810:CDS 40.0%
!! GTTGGTGGTTTAGGGAATTT+AGG + chr6_3:18157457-18157476 Msa0942810:CDS 40.0%
TGAGAAACCAATGCAGGAAA+GGG + chr6_3:18157645-18157664 Msa0942810:CDS 40.0%
TGCGTATAAAGAGCAGATTC+CGG - chr6_3:18157685-18157704 None:intergenic 40.0%
! TGCTGCACTTTCTAGAAAGA+AGG + chr6_3:18157732-18157751 Msa0942810:CDS 40.0%
! TCTTAGGTATCGTGCGAATT+TGG - chr6_3:18157837-18157856 None:intergenic 40.0%
ACCGATGTATCCAAAGTTCT+CGG + chr6_3:18157957-18157976 Msa0942810:CDS 40.0%
! CACACAATAGTGTTGTTCTC+GGG - chr6_3:18158027-18158046 None:intergenic 40.0%
! CCACACAATAGTGTTGTTCT+CGG - chr6_3:18158028-18158047 None:intergenic 40.0%
CGAGAACAACACTATTGTGT+GGG + chr6_3:18158026-18158045 Msa0942810:CDS 40.0%
!!! GGTTTTGAAGTGAAGAGGAA+AGG + chr6_3:18158078-18158097 Msa0942810:CDS 40.0%
GGTGAAAGCTTAAACTTCTC+AGG - chr6_3:18158150-18158169 None:intergenic 40.0%
! TAAGCTTTCACCAGCATTGA+CGG + chr6_3:18158158-18158177 Msa0942810:CDS 40.0%
!! CAGCCTCTTCAGAAAGTATT+TGG + chr6_3:18158294-18158313 Msa0942810:CDS 40.0%
!! GCCTCTTCAGAAAGTATTTG+GGG + chr6_3:18158296-18158315 Msa0942810:CDS 40.0%
! TCCCCAAATACTTTCTGAAG+AGG - chr6_3:18158300-18158319 None:intergenic 40.0%
ATCTGATGCTCCAGAACTAT+AGG - chr6_3:18158384-18158403 None:intergenic 40.0%
! GGAGCATCAGATCAAACTAT+CGG + chr6_3:18158392-18158411 Msa0942810:CDS 40.0%
GAGCATCAGATCAAACTATC+GGG + chr6_3:18158393-18158412 Msa0942810:CDS 40.0%
ACATGTGATGAAGCGATATG+TGG + chr6_3:18158528-18158547 Msa0942810:CDS 40.0%
!! CCTGCTTTGAGATTCAATCA+AGG - chr6_3:18158637-18158656 None:intergenic 40.0%
CCTTGATTGAATCTCAAAGC+AGG + chr6_3:18158634-18158653 Msa0942810:CDS 40.0%
ATAGTGCTCAAAGCTTACCA+TGG - chr6_3:18158732-18158751 None:intergenic 40.0%
ATTAATTCACCATCGTCTGC+CGG + chr6_3:18158843-18158862 Msa0942810:intron 40.0%
! GCGCCTATTTTCATCTCATA+TGG + chr6_3:18159224-18159243 Msa0942810:intron 40.0%
GCGCCATATGAGATGAAAAT+AGG - chr6_3:18159230-18159249 None:intergenic 40.0%
!!! CATTTTCTAAGACCTGCAAC+TGG + chr6_3:18159392-18159411 Msa0942810:intron 40.0%
CTATCATACCATGGTCATAC+AGG - chr6_3:18159422-18159441 None:intergenic 40.0%
CTGTATGACCATGGTATGAT+AGG + chr6_3:18159420-18159439 Msa0942810:intron 40.0%
! GATTTCAGAATAAGGAGCAC+TGG - chr6_3:18159716-18159735 None:intergenic 40.0%
CAGTATTCACAAATACGGCA+TGG - chr6_3:18159809-18159828 None:intergenic 40.0%
GAATACTGCTCCATAGCATA+TGG + chr6_3:18159821-18159840 Msa0942810:three_prime_UTR 40.0%
ATCAGCAATGCAACTAGTTG+CGG - chr6_3:18159859-18159878 None:intergenic 40.0%
! GTTGTTGTTGTAGTCCACAA+TGG + chr6_3:18159934-18159953 Msa0942810:three_prime_UTR 40.0%
TCTTGTTACTGACACAACAC+AGG + chr6_3:18160033-18160052 Msa0942810:three_prime_UTR 40.0%
! GTGAAGCTTTAGCTAGGGTT+TGG - chr6_3:18156646-18156665 None:intergenic 45.0%
ATCTTCCTGAATCCAGATCG+AGG + chr6_3:18156887-18156906 Msa0942810:five_prime_UTR 45.0%
GTTTACCTCGATCTGGATTC+AGG - chr6_3:18156895-18156914 None:intergenic 45.0%
! GAAGCACCAATGCCTTTAGA+AGG - chr6_3:18157163-18157182 None:intergenic 45.0%
GGTGCTTCTTCATCATCCTT+TGG + chr6_3:18157175-18157194 Msa0942810:CDS 45.0%
GCTTGGGCTTGTGAAAAAAC+AGG - chr6_3:18157238-18157257 None:intergenic 45.0%
CTTGAAAACCAGCAGCCATT+TGG - chr6_3:18157285-18157304 None:intergenic 45.0%
!!! CAAATGGCTGCTGGTTTTCA+AGG + chr6_3:18157283-18157302 Msa0942810:CDS 45.0%
AGGCTCATTTGCAAGCTCAA+GGG + chr6_3:18157413-18157432 Msa0942810:CDS 45.0%
!! CAGAATCAGGTTGGTGGTTT+AGG + chr6_3:18157448-18157467 Msa0942810:CDS 45.0%
!! GTCCTTTGAAACCACCTATG+AGG + chr6_3:18157530-18157549 Msa0942810:CDS 45.0%
! TTTGAAACCACCTATGAGGC+CGG + chr6_3:18157534-18157553 Msa0942810:CDS 45.0%
!! TTCTGAGGCGAAAATCCAAC+CGG - chr6_3:18157556-18157575 None:intergenic 45.0%
GTTAGTTCCATCGGTCTCAA+CGG - chr6_3:18157589-18157608 None:intergenic 45.0%
!! CTTTCCTGCATTGGTTTCTC+AGG - chr6_3:18157646-18157665 None:intergenic 45.0%
CTGAGAAACCAATGCAGGAA+AGG + chr6_3:18157644-18157663 Msa0942810:CDS 45.0%
ACTATCTTCAGAGTCCACGT+CGG - chr6_3:18157877-18157896 None:intergenic 45.0%
! ACGTGGACTCTGAAGATAGT+TGG + chr6_3:18157877-18157896 Msa0942810:CDS 45.0%
! CGTGGACTCTGAAGATAGTT+GGG + chr6_3:18157878-18157897 Msa0942810:CDS 45.0%
! GACTCTGAAGATAGTTGGGA+GGG + chr6_3:18157882-18157901 Msa0942810:CDS 45.0%
! GAAGATAGTTGGGAGGGTAT+TGG + chr6_3:18157888-18157907 Msa0942810:CDS 45.0%
GCCGAGAACTTTGGATACAT+CGG - chr6_3:18157961-18157980 None:intergenic 45.0%
TTGTTCTCGGGATATAGCCT+CGG - chr6_3:18158015-18158034 None:intergenic 45.0%
CCGAGAACAACACTATTGTG+TGG + chr6_3:18158025-18158044 Msa0942810:CDS 45.0%
TCAAAACCTTCTTGAGGAGC+AGG - chr6_3:18158066-18158085 None:intergenic 45.0%
TGCGATATGGCACTATGTGA+AGG + chr6_3:18158224-18158243 Msa0942810:CDS 45.0%
TATGGCACTATGTGAAGGCT+AGG + chr6_3:18158229-18158248 Msa0942810:CDS 45.0%
TGATGCTCCAGAACTATAGG+TGG - chr6_3:18158381-18158400 None:intergenic 45.0%
TATCGGGAAATAGTCCAGCT+GGG + chr6_3:18158409-18158428 Msa0942810:CDS 45.0%
! GAGTGCTTGTTACGATGCAA+TGG + chr6_3:18158431-18158450 Msa0942810:CDS 45.0%
GCAGACAACTCCCTTTGAAT+AGG - chr6_3:18158471-18158490 None:intergenic 45.0%
AAGGGAGTTGTCTGCACTAT+TGG + chr6_3:18158476-18158495 Msa0942810:CDS 45.0%
! GAAAAATCCACGAGCATCGT+AGG + chr6_3:18158559-18158578 Msa0942810:CDS 45.0%
!!! TCTTTTTCAGCACTGCGACT+AGG - chr6_3:18158684-18158703 None:intergenic 45.0%
TGCTCAAAGCTTACCATGGT+TGG - chr6_3:18158728-18158747 None:intergenic 45.0%
CACAAATACGGCATGGAAGA+TGG - chr6_3:18159802-18159821 None:intergenic 45.0%
GTTGTTGTAGTCCACAATGG+TGG + chr6_3:18159937-18159956 Msa0942810:three_prime_UTR 45.0%
!! TATAAAATAAAATAAAACAA+TGG - chr6_3:18158775-18158794 None:intergenic 5.0%
GGGCATTCCAGCATTACCAA+AGG - chr6_3:18157194-18157213 None:intergenic 50.0%
! TTTTTCACAAGCCCAAGCCC+AGG + chr6_3:18157240-18157259 Msa0942810:CDS 50.0%
TTGAGCTTGAGCTTGAGCCT+GGG - chr6_3:18157260-18157279 None:intergenic 50.0%
AGCTCAAGCTCAAGCCCAAA+TGG + chr6_3:18157267-18157286 Msa0942810:CDS 50.0%
AGTAGCTCATGCTCAGCTTC+AGG + chr6_3:18157393-18157412 Msa0942810:CDS 50.0%
CAGGCTCATTTGCAAGCTCA+AGG + chr6_3:18157412-18157431 Msa0942810:CDS 50.0%
GGCCTCATAGGTGGTTTCAA+AGG - chr6_3:18157535-18157554 None:intergenic 50.0%
GAAAATCCAACCGGCCTCAT+AGG - chr6_3:18157547-18157566 None:intergenic 50.0%
TTTCTCACCGTTGAGACCGA+TGG + chr6_3:18157579-18157598 Msa0942810:CDS 50.0%
GCTTCCTGAGAAACCAATGC+AGG + chr6_3:18157639-18157658 Msa0942810:CDS 50.0%
GAAACCAATGCAGGAAAGGG+TGG + chr6_3:18157648-18157667 Msa0942810:CDS 50.0%
!!! AAGGGTGGCTGCTATTTTGC+CGG + chr6_3:18157663-18157682 Msa0942810:CDS 50.0%
TCTCGAGTTTGAGTCTCGTG+TGG + chr6_3:18157708-18157727 Msa0942810:CDS 50.0%
! GGACTCTGAAGATAGTTGGG+AGG + chr6_3:18157881-18157900 Msa0942810:CDS 50.0%
!! GTTGGGAGGGTATTGGAAGA+TGG + chr6_3:18157895-18157914 Msa0942810:CDS 50.0%
GACGACTTCTGAACTACTCC+CGG - chr6_3:18157937-18157956 None:intergenic 50.0%
GCAAGAACTTCCGTCAATGC+TGG - chr6_3:18158171-18158190 None:intergenic 50.0%
!! CCAGAACTATAGGTGGTGGA+GGG - chr6_3:18158374-18158393 None:intergenic 50.0%
! TCCAGAACTATAGGTGGTGG+AGG - chr6_3:18158375-18158394 None:intergenic 50.0%
TGCTCCAGAACTATAGGTGG+TGG - chr6_3:18158378-18158397 None:intergenic 50.0%
CTATCGGGAAATAGTCCAGC+TGG + chr6_3:18158408-18158427 Msa0942810:CDS 50.0%
! AAATCCACGAGCATCGTAGG+AGG + chr6_3:18158562-18158581 Msa0942810:CDS 50.0%
CAATCAATTCCGGCAGACGA+TGG - chr6_3:18158855-18158874 None:intergenic 50.0%
TCTAGGTATCACGTGCTTCC+TGG - chr6_3:18159687-18159706 None:intergenic 50.0%
CTCGCAGGATCCATATGCTA+TGG - chr6_3:18159834-18159853 None:intergenic 50.0%
TTGAGCTTGAGCCTGGGCTT+GGG - chr6_3:18157254-18157273 None:intergenic 55.0%
CTTGAGCTTGAGCTTGAGCC+TGG - chr6_3:18157261-18157280 None:intergenic 55.0%
AGGGCAGTTTCCACAGTCAC+AGG + chr6_3:18157303-18157322 Msa0942810:CDS 55.0%
ATAGCATGGGCCTGTGACTG+TGG - chr6_3:18157316-18157335 None:intergenic 55.0%
TAAGGCTCAGGCTCAAGCTC+AGG + chr6_3:18157351-18157370 Msa0942810:CDS 55.0%
TCGTCGTCTATGTCTACGCC+TGG + chr6_3:18157487-18157506 Msa0942810:CDS 55.0%
CGTCGTCTATGTCTACGCCT+GGG + chr6_3:18157488-18157507 Msa0942810:CDS 55.0%
TCTATGTCTACGCCTGGGAG+CGG + chr6_3:18157493-18157512 Msa0942810:CDS 55.0%
AAACCACCTATGAGGCCGGT+TGG + chr6_3:18157538-18157557 Msa0942810:CDS 55.0%
AATCCAACCGGCCTCATAGG+TGG - chr6_3:18157544-18157563 None:intergenic 55.0%
GCAGCAGGCGTTAGTTCCAT+CGG - chr6_3:18157598-18157617 None:intergenic 55.0%
AACTAACGCCTGCTGCTGCA+CGG + chr6_3:18157602-18157621 Msa0942810:CDS 55.0%
! GGCTCGGCATTTGGCTTCTT+AGG - chr6_3:18157853-18157872 None:intergenic 55.0%
ATCTTCAGAGTCCACGTCGG+AGG - chr6_3:18157874-18157893 None:intergenic 55.0%
GAACTACTCCCGGCTGATCA+GGG - chr6_3:18157927-18157946 None:intergenic 55.0%
TGAACTACTCCCGGCTGATC+AGG - chr6_3:18157928-18157947 None:intergenic 55.0%
CGATCACCTGCTCCTCAAGA+AGG + chr6_3:18158057-18158076 Msa0942810:CDS 55.0%
!! GGTGGTGGAGGGAACAAATG+TGG - chr6_3:18158363-18158382 None:intergenic 55.0%
CCCTCCACCACCTATAGTTC+TGG + chr6_3:18158371-18158390 Msa0942810:CDS 55.0%
TCGTAACAAGCACTCCCAGC+TGG - chr6_3:18158426-18158445 None:intergenic 55.0%
AGGAGGCGGGCATTCTTTCT+TGG + chr6_3:18158579-18158598 Msa0942810:CDS 55.0%
AGGGATCTGAAAGCTGCAGC+TGG + chr6_3:18158654-18158673 Msa0942810:CDS 55.0%
CATACAGGGTTGCCAGTTGC+AGG - chr6_3:18159407-18159426 None:intergenic 55.0%
CTGGCAACCCTGTATGACCA+TGG + chr6_3:18159411-18159430 Msa0942810:intron 55.0%
TTGAATCGCAAACCCGCTGC+AGG + chr6_3:18159651-18159670 Msa0942810:CDS 55.0%
! TGGAGCATCACTTCCTGCAG+CGG - chr6_3:18159667-18159686 None:intergenic 55.0%
!! AGGAGCACTGGGACTTCTCT+AGG - chr6_3:18159704-18159723 None:intergenic 55.0%
CTTGAGCTTGAGCCTGGGCT+TGG - chr6_3:18157255-18157274 None:intergenic 60.0%
GCTCAAGCCCAAATGGCTGC+TGG + chr6_3:18157274-18157293 Msa0942810:CDS 60.0%
TTCTTCCTCCGTGCAGCAGC+AGG - chr6_3:18157613-18157632 None:intergenic 60.0%
GCAGCCACCCTTTCCTGCAT+TGG - chr6_3:18157655-18157674 None:intergenic 60.0%
!! TGGCGTTGACCCTGATCAGC+CGG + chr6_3:18157915-18157934 Msa0942810:CDS 60.0%
! TCCACGAGCATCGTAGGAGG+CGG + chr6_3:18158565-18158584 Msa0942810:CDS 60.0%
! GGAGCATCACTTCCTGCAGC+GGG - chr6_3:18159666-18159685 None:intergenic 60.0%
GCTGCAGGAAGTGATGCTCC+AGG + chr6_3:18159666-18159685 Msa0942810:CDS 60.0%
CAACTAGTTGCGGTGCTCGC+AGG - chr6_3:18159849-18159868 None:intergenic 60.0%
CGTTTCGCACTACCGCTCCC+AGG - chr6_3:18157508-18157527 None:intergenic 65.0%
GGGAGCGGTAGTGCGAAACG+TGG + chr6_3:18157508-18157527 Msa0942810:CDS 65.0%
TAACGCCTGCTGCTGCACGG+AGG + chr6_3:18157605-18157624 Msa0942810:CDS 65.0%
CACGTCGGAGGCTCGGCATT+TGG - chr6_3:18157862-18157881 None:intergenic 65.0%
CAAATGCCGAGCCTCCGACG+TGG + chr6_3:18157860-18157879 Msa0942810:CDS 65.0%
CAGAGTCCACGTCGGAGGCT+CGG - chr6_3:18157869-18157888 None:intergenic 65.0%
!! GGCGTTGACCCTGATCAGCC+GGG + chr6_3:18157916-18157935 Msa0942810:CDS 65.0%
! CCACGAGCATCGTAGGAGGC+GGG + chr6_3:18158566-18158585 Msa0942810:CDS 65.0%
CCCGCCTCCTACGATGCTCG+TGG - chr6_3:18158569-18158588 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 18156564 18160183 18156564 ID=Msa0942810;Name=Msa0942810
chr6_3 mRNA 18156564 18160183 18156564 ID=Msa0942810-mRNA-1;Parent=Msa0942810;Name=Msa0942810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=460|1|1|1|0.5|0.33|3|485|557
chr6_3 exon 18156564 18156908 18156564 ID=Msa0942810-mRNA-1:exon:5402;Parent=Msa0942810-mRNA-1
chr6_3 exon 18157018 18158733 18157018 ID=Msa0942810-mRNA-1:exon:5403;Parent=Msa0942810-mRNA-1
chr6_3 exon 18159626 18160183 18159626 ID=Msa0942810-mRNA-1:exon:5404;Parent=Msa0942810-mRNA-1
chr6_3 five_prime_UTR 18156564 18156908 18156564 ID=Msa0942810-mRNA-1:five_prime_utr;Parent=Msa0942810-mRNA-1
chr6_3 five_prime_UTR 18157018 18157132 18157018 ID=Msa0942810-mRNA-1:five_prime_utr;Parent=Msa0942810-mRNA-1
chr6_3 CDS 18157133 18158733 18157133 ID=Msa0942810-mRNA-1:cds;Parent=Msa0942810-mRNA-1
chr6_3 CDS 18159626 18159698 18159626 ID=Msa0942810-mRNA-1:cds;Parent=Msa0942810-mRNA-1
chr6_3 three_prime_UTR 18159699 18160183 18159699 ID=Msa0942810-mRNA-1:three_prime_utr;Parent=Msa0942810-mRNA-1
Gene Sequence

>Msa0942810

ATGTCTGTGAACAATAATAACAACAACCCTTCTAAAGGCATTGGTGCTTCTTCATCATCCTTTGGTAATGCTGGAATGCCCTCTAATTCTATGTCTACAAACCCTGTTTTTTCACAAGCCCAAGCCCAGGCTCAAGCTCAAGCTCAAGCCCAAATGGCTGCTGGTTTTCAAGGGCAGTTTCCACAGTCACAGGCCCATGCTATAGTTCAAGCACAAAATAAGGCTCAGGCTCAAGCTCAGGCTCATGCACAAGCTGCAGCAGTAGCTCATGCTCAGCTTCAGGCTCATTTGCAAGCTCAAGGGTTGAGTCTTAATCAGAATCAGGTTGGTGGTTTAGGGAATTTAGGGATTTCGTCGTCGTCTATGTCTACGCCTGGGAGCGGTAGTGCGAAACGTGGTCCTTTGAAACCACCTATGAGGCCGGTTGGATTTTCGCCTCAGAATAATTTCTCACCGTTGAGACCGATGGAACTAACGCCTGCTGCTGCACGGAGGAAGAAGCAGAAGCTTCCTGAGAAACCAATGCAGGAAAGGGTGGCTGCTATTTTGCCGGAATCTGCTCTTTATACGCAGCTTCTCGAGTTTGAGTCTCGTGTGGATGCTGCACTTTCTAGAAAGAAGGTTGATATTCAGGAAGCGCTGAAAAATCCGCCTTGTATTCAGAAAACTCTTCGTATTTATGTATTTAACACTTTTGCAAACCAAATTCGCACGATACCTAAGAAGCCAAATGCCGAGCCTCCGACGTGGACTCTGAAGATAGTTGGGAGGGTATTGGAAGATGGCGTTGACCCTGATCAGCCGGGAGTAGTTCAGAAGTCGTCACCGATGTATCCAAAGTTCTCGGCTTTCTTTAAAAAAGTAATCATTACTTTGGATCCGAGGCTATATCCCGAGAACAACACTATTGTGTGGGATAGTTATCGATCACCTGCTCCTCAAGAAGGTTTTGAAGTGAAGAGGAAAGGGGATAAAGAGTTTTCGGTGAATATACAGTTTTATATGAATTATGCACCTGAGAAGTTTAAGCTTTCACCAGCATTGACGGAAGTTCTTGCTATCGACGTTGATACTCGTCCAAGAATTATTGCTGCGATATGGCACTATGTGAAGGCTAGGAAACTACAGAACCCTAACGACCCTTCTTTTTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGGGAAGAAAAGGTGAAGTTCACAACAGTTTCGCAGAAAATATCGCCACATTTGTTCCCTCCACCACCTATAGTTCTGGAGCATCAGATCAAACTATCGGGAAATAGTCCAGCTGGGAGTGCTTGTTACGATGCAATGGTTGATATTCCTTTTCCTATTCAAAGGGAGTTGTCTGCACTATTGGCAAATGTCGAGAAGAACAAAGAGATTGAAACATGTGATGAAGCGATATGTGGAATCATTAGAAAAATCCACGAGCATCGTAGGAGGCGGGCATTCTTTCTTGGTTTCAGTCAATCTCCAGTAGAATTTATTAATGCCTTGATTGAATCTCAAAGCAGGGATCTGAAAGCTGCAGCTGGAGAACCTAGTCGCAGTGCTGAAAAAGAGCGTCGAGCAGATTTTTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATACTTGAATCGCAAACCCGCTGCAGGAAGTGATGCTCCAGGAAGCACGTGA
Protein sequence

>Msa0942810

MSVNNNNNNPSKGIGASSSSFGNAGMPSNSMSTNPVFSQAQAQAQAQAQAQMAAGFQGQFPQSQAHAIVQAQNKAQAQAQAHAQAAAVAHAQLQAHLQAQGLSLNQNQVGGLGNLGISSSSMSTPGSGSAKRGPLKPPMRPVGFSPQNNFSPLRPMELTPAAARRKKQKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKKVIITLDPRLYPENNTIVWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKVKFTTVSQKISPHLFPPPPIVLEHQIKLSGNSPAGSACYDAMVDIPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRADFFNQPWVEDAVIRYLNRKPAAGSDAPGST*