AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0952840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952840 MtrunA17_Chr6g0459511 98.748 559 6 1 1 559 1 558 0.0 1132
Msa0952840 MtrunA17_Chr3g0116121 52.500 560 226 12 7 555 2 532 0.0 537
Msa0952840 MtrunA17_Chr4g0057611 52.907 516 223 6 42 556 32 528 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952840 AT5G14170.1 70.072 558 140 5 3 558 1 533 0.0 742
Msa0952840 AT3G01890.1 70.258 427 105 7 129 552 51 458 0.0 588

Find 186 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCTTCAGAAAGTATT+TGG 0.145085 6_3:+47941786 Msa0952840:CDS
CAGAATCAGGTTGGTGGTTT+AGG 0.152862 6_3:+47940940 Msa0952840:CDS
GAGAGAGAAAGAGATGAATT+TGG 0.195499 6_3:-47940176 None:intergenic
CTTGAGCTTGAGCCTGGGCT+TGG 0.215614 6_3:-47940738 None:intergenic
CTTGAGCTTGAGCTTGAGCC+TGG 0.224480 6_3:-47940744 None:intergenic
TCTTAGGTATCGTGCGAATT+TGG 0.236171 6_3:-47941326 None:intergenic
GTTGGTGGTTTAGGGAATTT+AGG 0.238116 6_3:+47940949 Msa0952840:CDS
TAGAAAGAAGGTTGATATTC+AGG 0.242285 6_3:+47941236 Msa0952840:CDS
ATTGAAATGCATAGCATAAA+AGG 0.247724 6_3:-47943238 None:intergenic
AACAAAGGGTAAGATGAATT+AGG 0.248059 6_3:-47940269 None:intergenic
GTTTACCTCGATCTGGATTC+AGG 0.267662 6_3:-47940379 None:intergenic
AGGAGGCGGGCATTCTTTCT+TGG 0.270814 6_3:+47942071 Msa0952840:CDS
GGCTCGGCATTTGGCTTCTT+AGG 0.274246 6_3:-47941342 None:intergenic
AGAATCAGGTTGGTGGTTTA+GGG 0.294649 6_3:+47940941 Msa0952840:CDS
TCTAGGTATCACGTGCTTCC+TGG 0.306640 6_3:-47943180 None:intergenic
CCCTCCACCACCTATAGTTC+TGG 0.307931 6_3:+47941863 Msa0952840:CDS
TTGAGCTTGAGCCTGGGCTT+GGG 0.311548 6_3:-47940737 None:intergenic
AAGGGAGTTGTCTGCACTAT+TGG 0.318030 6_3:+47941968 Msa0952840:CDS
TTATGATTTAGGTACCCTTT+TGG 0.319407 6_3:+47940493 Msa0952840:intron
TATAGTTCAAGCACAAAATA+AGG 0.327992 6_3:+47940825 Msa0952840:CDS
TGATAATTTATCAGATTGTT+AGG 0.331724 6_3:+47943371 Msa0952840:three_prime_UTR
ACAAAGGGTAAGATGAATTA+GGG 0.335171 6_3:-47940268 None:intergenic
AGCCTCTTCAGAAAGTATTT+GGG 0.344612 6_3:+47941787 Msa0952840:CDS
CACGTCGGAGGCTCGGCATT+TGG 0.346531 6_3:-47941351 None:intergenic
GGTGCTTCTTCATCATCCTT+TGG 0.346778 6_3:+47940661 Msa0952840:CDS
TTAATTTGTGTACAATATCT+TGG 0.349286 6_3:+47943502 Msa0952840:three_prime_UTR
CTTTCCTGCATTGGTTTCTC+AGG 0.350339 6_3:-47941135 None:intergenic
TTGGTGGTTTAGGGAATTTA+GGG 0.355718 6_3:+47940950 Msa0952840:CDS
CTTGAAAACCAGCAGCCATT+TGG 0.355992 6_3:-47940774 None:intergenic
GAAGCACCAATGCCTTTAGA+AGG 0.357702 6_3:-47940646 None:intergenic
CAAGAATTATTGCTGCGATA+TGG 0.358007 6_3:+47941703 Msa0952840:CDS
TGAACTACTCCCGGCTGATC+AGG 0.367241 6_3:-47941417 None:intergenic
CATATCGCAGCAATAATTCT+TGG 0.368476 6_3:-47941702 None:intergenic
TTGAAAACCAGCAGCCATTT+GGG 0.374986 6_3:-47940773 None:intergenic
GTGAAGCTTTAGCTAGGGTT+TGG 0.375434 6_3:-47940132 None:intergenic
TTCTTCCTCCGTGCAGCAGC+AGG 0.379617 6_3:-47941102 None:intergenic
TCATCATCCTTTGGTAATGC+TGG 0.383448 6_3:+47940670 Msa0952840:CDS
GTTGAGTCTTAATCAGAATC+AGG 0.385261 6_3:+47940927 Msa0952840:CDS
GGATGAATGATTTCAGAATA+AGG 0.387464 6_3:-47943217 None:intergenic
CTTTAGCTAGGGTTTGGAAA+AGG 0.394190 6_3:-47940126 None:intergenic
GAAGATAGTTGGGAGGGTAT+TGG 0.394511 6_3:+47941380 Msa0952840:CDS
ATAATCAATCATAGACCAAA+AGG 0.404488 6_3:-47940508 None:intergenic
TAATTTGTGTACAATATCTT+GGG 0.408090 6_3:+47943503 Msa0952840:three_prime_UTR
ATCCAAATCTAATCAACAAA+AGG 0.410687 6_3:-47940592 None:intergenic
GTTTGTAGACATAGAATTAG+AGG 0.423500 6_3:-47940698 None:intergenic
GAAAGTATTTGGGGAAGAAA+AGG 0.423540 6_3:+47941797 Msa0952840:CDS
CACAAATACGGCATGGAAGA+TGG 0.426654 6_3:-47943295 None:intergenic
GCAGACAACTCCCTTTGAAT+AGG 0.427857 6_3:-47941960 None:intergenic
AGTAGCTCATGCTCAGCTTC+AGG 0.429379 6_3:+47940885 Msa0952840:CDS
TTAAAGAAAGCCGAGAACTT+TGG 0.432630 6_3:-47941459 None:intergenic
ATGCATTTCAATATAAATCA+AGG 0.432834 6_3:+47943249 Msa0952840:three_prime_UTR
CAGGCTCATTTGCAAGCTCA+AGG 0.433801 6_3:+47940904 Msa0952840:CDS
GAAAATCCAACCGGCCTCAT+AGG 0.434394 6_3:-47941036 None:intergenic
AAGTAATGTTTACCTCGATC+TGG 0.435460 6_3:-47940386 None:intergenic
TTTAGCTAGGGTTTGGAAAA+GGG 0.437818 6_3:-47940125 None:intergenic
TCGTCGTCGATGTCTACGCC+TGG 0.438452 6_3:+47940979 Msa0952840:CDS
GCAGCCACCCTTTCCTGCAT+TGG 0.440696 6_3:-47941144 None:intergenic
TGCGTATAAAGAGCAGATTC+CGG 0.443933 6_3:-47941174 None:intergenic
AGCTCAAGCTCAAGCCCAAA+TGG 0.443969 6_3:+47940759 Msa0952840:CDS
TGAAAATTGAGAAAAGAAAG+AGG 0.450872 6_3:-47940236 None:intergenic
AAAAGAAAGAGGTGAATTGA+GGG 0.455761 6_3:-47940225 None:intergenic
GAATACTGCTCCATAGCATA+TGG 0.456826 6_3:+47943317 Msa0952840:three_prime_UTR
TCAAAACCTTCTTGAGGAGC+AGG 0.460085 6_3:-47941555 None:intergenic
ATCTGATGCTCCAGAACTAT+AGG 0.460674 6_3:-47941873 None:intergenic
ACCGATGTATCCAAAGTTCT+CGG 0.461991 6_3:+47941449 Msa0952840:CDS
CCACACAATAGTGTTGTTCT+CGG 0.463598 6_3:-47941517 None:intergenic
AAGGCATTAATAAATTCTAC+TGG 0.468844 6_3:-47942107 None:intergenic
GGTGAAAGCTTAAACTTCTC+AGG 0.469046 6_3:-47941639 None:intergenic
ATGGCTTCTTCTTCAATCAG+TGG 0.472593 6_3:+47940351 Msa0952840:five_prime_UTR
GAAAAGAAAGAGGTGAATTG+AGG 0.472604 6_3:-47940226 None:intergenic
TTGAGCTTGAGCTTGAGCCT+GGG 0.473893 6_3:-47940743 None:intergenic
GCGTTTAGTTCTGAATGGTT+TGG 0.475659 6_3:-47940076 None:intergenic
CTATCGGGAAATAGTCCAGC+TGG 0.478886 6_3:+47941900 Msa0952840:CDS
TGCTCAAAGCTTACCATGGT+TGG 0.480015 6_3:-47942217 None:intergenic
TGGCGTTGACCCTGATCAGC+CGG 0.481582 6_3:+47941407 Msa0952840:CDS
CGTGGACTCTGAAGATAGTT+GGG 0.481652 6_3:+47941370 Msa0952840:CDS
CGATCACCTGCTCCTCAAGA+AGG 0.484816 6_3:+47941549 Msa0952840:CDS
TGCTGCACTTTCTAGAAAGA+AGG 0.485884 6_3:+47941224 Msa0952840:CDS
GATTTCAGAATAAGGAGCAC+TGG 0.489340 6_3:-47943209 None:intergenic
AACTCCCTTTGAATAGGAAA+AGG 0.491119 6_3:-47941954 None:intergenic
TAAGCTTTCACCAGCATTGA+CGG 0.492158 6_3:+47941650 Msa0952840:CDS
AGGAGCACTGGGACTTCTCT+AGG 0.495887 6_3:-47943197 None:intergenic
CTGAGAAACCAATGCAGGAA+AGG 0.496111 6_3:+47941136 Msa0952840:CDS
ACGTGGACTCTGAAGATAGT+TGG 0.500504 6_3:+47941369 Msa0952840:CDS
TAAGGCTCAGGCTCAAGCTC+AGG 0.501606 6_3:+47940843 Msa0952840:CDS
GGAGCATCACTTCCTGCAGC+GGG 0.501664 6_3:-47943159 None:intergenic
AATAACAACAACCCTTCTAA+AGG 0.502773 6_3:+47940634 Msa0952840:CDS
AGGGCAGTTTCCACAGTCAC+AGG 0.503395 6_3:+47940795 Msa0952840:CDS
TCAGATTGTTAGGAGAAAGA+TGG 0.506419 6_3:+47943381 Msa0952840:three_prime_UTR
CAGAGTCCACGTCGGAGGCT+CGG 0.506975 6_3:-47941358 None:intergenic
AGAGAAAGAGATGAATTTGG+AGG 0.507559 6_3:-47940173 None:intergenic
CCTTGATTGAATCTCAAAGC+AGG 0.511145 6_3:+47942126 Msa0952840:CDS
TTCTGAGGCGAAAATCCAAC+CGG 0.514583 6_3:-47941045 None:intergenic
AGGGATCTGAAAGCTGCAGC+TGG 0.516281 6_3:+47942146 Msa0952840:CDS
TGAGAAACCAATGCAGGAAA+GGG 0.518820 6_3:+47941137 Msa0952840:CDS
TCCAAATCTAATCAACAAAA+GGG 0.518852 6_3:-47940591 None:intergenic
CTCGCAGGATCCATATGCTA+TGG 0.518914 6_3:-47943327 None:intergenic
TGGAGCAGTATTCACAAATA+CGG 0.519081 6_3:-47943307 None:intergenic
GTTGGGAGGGTATTGGAAGA+TGG 0.520571 6_3:+47941387 Msa0952840:CDS
CAACTAGTTGCAGTGCTCGC+AGG 0.522555 6_3:-47943342 None:intergenic
GTCCTTTGAAACCACCTATG+AGG 0.522585 6_3:+47941022 Msa0952840:CDS
AAGATGGTGAAGCTTTAGCT+AGG 0.522629 6_3:-47940138 None:intergenic
TCGTAACAAGCACTCCCAGC+TGG 0.524770 6_3:-47941915 None:intergenic
TTGAATCGCAAACCCGCTGC+AGG 0.527757 6_3:+47943147 Msa0952840:CDS
GGAGCATCAGATCAAACTAT+CGG 0.529729 6_3:+47941884 Msa0952840:CDS
GCAAGAACTTCCGTCAATGC+TGG 0.532598 6_3:-47941660 None:intergenic
TTTGTGCTTGAACTATAGCA+TGG 0.533313 6_3:-47940819 None:intergenic
TTAGCTAGGGTTTGGAAAAG+GGG 0.533624 6_3:-47940124 None:intergenic
TGATGAAGAGAGAGAAACAA+AGG 0.534087 6_3:-47940284 None:intergenic
GCTCAAGCCCAAATGGCTGC+TGG 0.535101 6_3:+47940766 Msa0952840:CDS
TCCAGAACTATAGGTGGTGG+AGG 0.535658 6_3:-47941864 None:intergenic
TCCACGAGCATCGTAGGAGG+CGG 0.535807 6_3:+47942057 Msa0952840:CDS
TCCCCAAATACTTTCTGAAG+AGG 0.537915 6_3:-47941789 None:intergenic
CTTAATCAGAATCAGGTTGG+TGG 0.541176 6_3:+47940934 Msa0952840:CDS
TGCTCCAGAACTATAGGTGG+TGG 0.541684 6_3:-47941867 None:intergenic
TCAAGCACAAAATAAGGCTC+AGG 0.542804 6_3:+47940831 Msa0952840:CDS
ATAGCATGGGCCTGTGACTG+TGG 0.543201 6_3:-47940805 None:intergenic
GTGAAGCGTTTAGTTCTGAA+TGG 0.546492 6_3:-47940081 None:intergenic
GATTGATTGTAACACAATCA+TGG 0.546569 6_3:-47943577 None:intergenic
TTTGAAACCACCTATGAGGC+CGG 0.549023 6_3:+47941026 Msa0952840:CDS
GGCGTTGACCCTGATCAGCC+GGG 0.550072 6_3:+47941408 Msa0952840:CDS
GAGCATCAGATCAAACTATC+GGG 0.554086 6_3:+47941885 Msa0952840:CDS
AACAACCCTTCTAAAGGCAT+TGG 0.556425 6_3:+47940640 Msa0952840:CDS
CACACAATAGTGTTGTTCTC+GGG 0.556965 6_3:-47941516 None:intergenic
CCTGCTTTGAGATTCAATCA+AGG 0.560426 6_3:-47942126 None:intergenic
TTTCTCACCGTTGAGACCGA+TGG 0.560848 6_3:+47941071 Msa0952840:CDS
TGGAGCATCACTTCCTGCAG+CGG 0.562803 6_3:-47943160 None:intergenic
CCACGAGCATCGTAGGAGGC+GGG 0.563419 6_3:+47942058 Msa0952840:CDS
TTGTGCTTGAACTATAGCAT+GGG 0.564247 6_3:-47940818 None:intergenic
GATGAAGAGAGAGAAACAAA+GGG 0.566176 6_3:-47940283 None:intergenic
AGGCTCATTTGCAAGCTCAA+GGG 0.569279 6_3:+47940905 Msa0952840:CDS
GAACTACTCCCGGCTGATCA+GGG 0.569681 6_3:-47941416 None:intergenic
TATGGCACTATGTGAAGGCT+AGG 0.572101 6_3:+47941721 Msa0952840:CDS
TCGATGTCTACGCCTGGGAG+CGG 0.572497 6_3:+47940985 Msa0952840:CDS
TTCACTTCAAAACCTTCTTG+AGG 0.576166 6_3:-47941561 None:intergenic
CCCGCCTCCTACGATGCTCG+TGG 0.579778 6_3:-47942058 None:intergenic
AACTAACGCCTGCTGCTGCA+CGG 0.579865 6_3:+47941094 Msa0952840:CDS
GCAGCAGGCGTTAGTTCCAT+CGG 0.581426 6_3:-47941087 None:intergenic
TCTCGAGTTTGAGTCTCGTG+TGG 0.582039 6_3:+47941200 Msa0952840:CDS
TGCATTTCAATATAAATCAA+GGG 0.583096 6_3:+47943250 Msa0952840:three_prime_UTR
TTGTTCTCGGGATATAGCCT+CGG 0.583394 6_3:-47941504 None:intergenic
CGTCGTCGATGTCTACGCCT+GGG 0.586905 6_3:+47940980 Msa0952840:CDS
TAATCAATCATAGACCAAAA+GGG 0.587342 6_3:-47940507 None:intergenic
GCTGCAGGAAGTGATGCTCC+AGG 0.587547 6_3:+47943162 Msa0952840:CDS
TTTGTAGACATAGAATTAGA+GGG 0.588228 6_3:-47940697 None:intergenic
GCCTCTTCAGAAAGTATTTG+GGG 0.589482 6_3:+47941788 Msa0952840:CDS
GAGGAAGATGAAGATGAAGA+TGG 0.591033 6_3:-47940154 None:intergenic
AGTCTTAATCAGAATCAGGT+TGG 0.591722 6_3:+47940931 Msa0952840:CDS
AGATGGTGAAGCTTTAGCTA+GGG 0.592052 6_3:-47940137 None:intergenic
GACGACTTCTGAACTACTCC+CGG 0.592418 6_3:-47941426 None:intergenic
GACTCTGAAGATAGTTGGGA+GGG 0.595717 6_3:+47941374 Msa0952840:CDS
GGCCTCATAGGTGGTTTCAA+AGG 0.597547 6_3:-47941024 None:intergenic
TAATCATTACTTTGGATCCG+AGG 0.599509 6_3:+47941487 Msa0952840:CDS
AAATCCACGAGCATCGTAGG+AGG 0.600190 6_3:+47942054 Msa0952840:CDS
GCTTCCTGAGAAACCAATGC+AGG 0.601644 6_3:+47941131 Msa0952840:CDS
CCGAGAACAACACTATTGTG+TGG 0.601969 6_3:+47941517 Msa0952840:CDS
GCCGAGAACTTTGGATACAT+CGG 0.603059 6_3:-47941450 None:intergenic
ATTTCAGAATAAGGAGCACT+GGG 0.606264 6_3:-47943208 None:intergenic
ACATGTGATGAAGCGATATG+TGG 0.611068 6_3:+47942020 Msa0952840:CDS
AAGCACCAATGCCTTTAGAA+GGG 0.611789 6_3:-47940645 None:intergenic
CGTTTCGCACTACCGCTCCC+AGG 0.612556 6_3:-47940997 None:intergenic
AATCCAACCGGCCTCATAGG+TGG 0.616407 6_3:-47941033 None:intergenic
TCTTGTTTGTGACGCAACAC+AGG 0.618331 6_3:+47943529 Msa0952840:three_prime_UTR
CAGTATTCACAAATACGGCA+TGG 0.619475 6_3:-47943302 None:intergenic
CGAGAACAACACTATTGTGT+GGG 0.622889 6_3:+47941518 Msa0952840:CDS
CTTGATTGAATCTCAAAGCA+GGG 0.625702 6_3:+47942127 Msa0952840:CDS
GTTGTAGTAGTCCACAATGG+TGG 0.625899 6_3:+47943433 Msa0952840:three_prime_UTR
GAGTGCTTGTTACGATGCAA+TGG 0.627382 6_3:+47941923 Msa0952840:CDS
GGTGGTGGAGGGAACAAATG+TGG 0.627777 6_3:-47941852 None:intergenic
GTTAGTTCCATCGGTCTCAA+CGG 0.632927 6_3:-47941078 None:intergenic
AATCAAAGAATCCACCATTG+TGG 0.634172 6_3:-47943444 None:intergenic
ATCTTCAGAGTCCACGTCGG+AGG 0.634474 6_3:-47941363 None:intergenic
TATCGGGAAATAGTCCAGCT+GGG 0.641484 6_3:+47941901 Msa0952840:CDS
GAAACCAATGCAGGAAAGGG+TGG 0.642837 6_3:+47941140 Msa0952840:CDS
TGCGATATGGCACTATGTGA+AGG 0.645164 6_3:+47941716 Msa0952840:CDS
CCAGAACTATAGGTGGTGGA+GGG 0.655511 6_3:-47941863 None:intergenic
GGACTCTGAAGATAGTTGGG+AGG 0.655821 6_3:+47941373 Msa0952840:CDS
AACGGTGAGAAATTATTCTG+AGG 0.664992 6_3:-47941060 None:intergenic
TGATGCTCCAGAACTATAGG+TGG 0.665812 6_3:-47941870 None:intergenic
GGGCATTCCAGCATTACCAA+AGG 0.666091 6_3:-47940677 None:intergenic
TGGTGGTTTAGGGAATTTAG+GGG 0.667873 6_3:+47940951 Msa0952840:CDS
GGGAGCGGTAGTGCGAAACG+TGG 0.679453 6_3:+47941000 Msa0952840:CDS
ATCTTCCTGAATCCAGATCG+AGG 0.697371 6_3:+47940374 Msa0952840:five_prime_UTR
TAACGCCTGCTGCTGCACGG+AGG 0.741030 6_3:+47941097 Msa0952840:CDS
GTTGTTGTAGTAGTCCACAA+TGG 0.744781 6_3:+47943430 Msa0952840:three_prime_UTR
ACTATCTTCAGAGTCCACGT+CGG 0.774690 6_3:-47941366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAGTAATCATTACTT+TGG + chr6_3:47941479-47941498 Msa0952840:CDS 15.0%
!! AAAATAAAATAAAACAATGG+AGG - chr6_3:47942264-47942283 None:intergenic 15.0%
!!! TGAAAAATGTGATTTTTTTG+GGG - chr6_3:47940324-47940343 None:intergenic 20.0%
!!! GTGAAAAATGTGATTTTTTT+GGG - chr6_3:47940325-47940344 None:intergenic 20.0%
!!! AGTGAAAAATGTGATTTTTT+TGG - chr6_3:47940326-47940345 None:intergenic 20.0%
!!! CTTGAATTTTGTTATGATTT+AGG + chr6_3:47940482-47940501 Msa0952840:intron 20.0%
!!! AAAGTTAAGATTTTTTCATC+TGG + chr6_3:47940538-47940557 Msa0952840:five_prime_UTR 20.0%
!!! AAGTTAAGATTTTTTCATCT+GGG + chr6_3:47940539-47940558 Msa0952840:five_prime_UTR 20.0%
!!! TCTTGAAGATTTGAATTTTA+GGG + chr6_3:47940562-47940581 Msa0952840:five_prime_UTR 20.0%
!!! AATTAATTTGCAATCAAAGA+TGG - chr6_3:47942322-47942341 None:intergenic 20.0%
!! TGTCAAAAAGTTGTTAAAAA+AGG - chr6_3:47942420-47942439 None:intergenic 20.0%
!!! TATTATTTTTGACCAATCAA+AGG + chr6_3:47942497-47942516 Msa0952840:intron 20.0%
!!! TACAACTTTTATGACAATTT+TGG - chr6_3:47942531-47942550 None:intergenic 20.0%
!! AACTTAGTATATATGTTAGT+TGG + chr6_3:47942683-47942702 Msa0952840:intron 20.0%
!!! TTCAAATGTTTTAAAATGCA+TGG + chr6_3:47942946-47942965 Msa0952840:intron 20.0%
!!! TCTGTATTTTCTATGTTTTA+TGG + chr6_3:47943022-47943041 Msa0952840:intron 20.0%
!! ATGCATTTCAATATAAATCA+AGG + chr6_3:47943249-47943268 Msa0952840:three_prime_UTR 20.0%
!! TGCATTTCAATATAAATCAA+GGG + chr6_3:47943250-47943269 Msa0952840:three_prime_UTR 20.0%
!! TGATAATTTATCAGATTGTT+AGG + chr6_3:47943371-47943390 Msa0952840:three_prime_UTR 20.0%
!!! TTAATTTGTGTACAATATCT+TGG + chr6_3:47943502-47943521 Msa0952840:three_prime_UTR 20.0%
!!! TAATTTGTGTACAATATCTT+GGG + chr6_3:47943503-47943522 Msa0952840:three_prime_UTR 20.0%
! TGAAAATTGAGAAAAGAAAG+AGG - chr6_3:47940239-47940258 None:intergenic 25.0%
!!! GAAAAATGTGATTTTTTTGG+GGG - chr6_3:47940323-47940342 None:intergenic 25.0%
! TACAAATTCTGTTACCAAAA+TGG - chr6_3:47940446-47940465 None:intergenic 25.0%
! TAATCAATCATAGACCAAAA+GGG - chr6_3:47940510-47940529 None:intergenic 25.0%
! ATAATCAATCATAGACCAAA+AGG - chr6_3:47940511-47940530 None:intergenic 25.0%
!! GTCTTGAAGATTTGAATTTT+AGG + chr6_3:47940561-47940580 Msa0952840:five_prime_UTR 25.0%
! TCCAAATCTAATCAACAAAA+GGG - chr6_3:47940594-47940613 None:intergenic 25.0%
! ATCCAAATCTAATCAACAAA+AGG - chr6_3:47940595-47940614 None:intergenic 25.0%
! TTTGTAGACATAGAATTAGA+GGG - chr6_3:47940700-47940719 None:intergenic 25.0%
! TATAGTTCAAGCACAAAATA+AGG + chr6_3:47940825-47940844 Msa0952840:CDS 25.0%
!! ATATTCCTTTTCCTATTCAA+AGG + chr6_3:47941949-47941968 Msa0952840:CDS 25.0%
!! TATTCCTTTTCCTATTCAAA+GGG + chr6_3:47941950-47941969 Msa0952840:CDS 25.0%
!! AAGGCATTAATAAATTCTAC+TGG - chr6_3:47942110-47942129 None:intergenic 25.0%
! AACTAAGACAATATATGGAA+GGG - chr6_3:47942645-47942664 None:intergenic 25.0%
! TCAACAACTAAGACAATATA+TGG - chr6_3:47942650-47942669 None:intergenic 25.0%
! ATATATTGTCTTAGTTGTTG+AGG + chr6_3:47942649-47942668 Msa0952840:intron 25.0%
! TTATTCTGCTATATGCTATT+TGG + chr6_3:47942805-47942824 Msa0952840:intron 25.0%
!!! GATTCTAGTCTTATTTTAAC+TGG - chr6_3:47942996-47943015 None:intergenic 25.0%
! ATTGAAATGCATAGCATAAA+AGG - chr6_3:47943241-47943260 None:intergenic 25.0%
! CATCATGAAAAATTTGTACT+AGG + chr6_3:47943474-47943493 Msa0952840:three_prime_UTR 25.0%
! ATGAAAAATTTGTACTAGGA+AGG + chr6_3:47943478-47943497 Msa0952840:three_prime_UTR 25.0%
!!! TGAATGGTTTGGTTTTGAAA+CGG - chr6_3:47940068-47940087 None:intergenic 30.0%
AAAAGAAAGAGGTGAATTGA+GGG - chr6_3:47940228-47940247 None:intergenic 30.0%
ACAAAGGGTAAGATGAATTA+GGG - chr6_3:47940271-47940290 None:intergenic 30.0%
AACAAAGGGTAAGATGAATT+AGG - chr6_3:47940272-47940291 None:intergenic 30.0%
!!! TGATTTTTTTGGGGGAATTA+GGG - chr6_3:47940315-47940334 None:intergenic 30.0%
! TCACATTTTTCACTTCTTCA+TGG + chr6_3:47940332-47940351 Msa0952840:five_prime_UTR 30.0%
! GATTTTCGTTCTTTCCATTT+TGG + chr6_3:47940429-47940448 Msa0952840:intron 30.0%
! TTATGATTTAGGTACCCTTT+TGG + chr6_3:47940493-47940512 Msa0952840:intron 30.0%
!! ACCCTTTTGTTGATTAGATT+TGG + chr6_3:47940590-47940609 Msa0952840:five_prime_UTR 30.0%
AATAACAACAACCCTTCTAA+AGG + chr6_3:47940634-47940653 Msa0952840:CDS 30.0%
GTTTGTAGACATAGAATTAG+AGG - chr6_3:47940701-47940720 None:intergenic 30.0%
!! TAGAAAGAAGGTTGATATTC+AGG + chr6_3:47941236-47941255 Msa0952840:CDS 30.0%
GATCACAGTGAAAAAAAGAA+GGG - chr6_3:47941767-47941786 None:intergenic 30.0%
TGATCACAGTGAAAAAAAGA+AGG - chr6_3:47941768-47941787 None:intergenic 30.0%
TCAAAGATGGTAGCAAATAA+AGG - chr6_3:47942309-47942328 None:intergenic 30.0%
GTGATATTTGTACAACTCTT+TGG - chr6_3:47942554-47942573 None:intergenic 30.0%
!!! TTCTTTTTTGAAATGGGGAA+GGG - chr6_3:47942619-47942638 None:intergenic 30.0%
ACTAAGACAATATATGGAAG+GGG - chr6_3:47942644-47942663 None:intergenic 30.0%
CAACTAAGACAATATATGGA+AGG - chr6_3:47942646-47942665 None:intergenic 30.0%
ATATATGTTAGTTGGACTGT+TGG + chr6_3:47942691-47942710 Msa0952840:intron 30.0%
! CACAATGTATTGGCAAATAT+CGG + chr6_3:47942828-47942847 Msa0952840:intron 30.0%
AATGAAATCCTATCATACCA+TGG - chr6_3:47942927-47942946 None:intergenic 30.0%
GGATGAATGATTTCAGAATA+AGG - chr6_3:47943220-47943239 None:intergenic 30.0%
GATTGATTGTAACACAATCA+TGG - chr6_3:47943580-47943599 None:intergenic 30.0%
TTTAGCTAGGGTTTGGAAAA+GGG - chr6_3:47940128-47940147 None:intergenic 35.0%
AGAGAAAGAGATGAATTTGG+AGG - chr6_3:47940176-47940195 None:intergenic 35.0%
GAGAGAGAAAGAGATGAATT+TGG - chr6_3:47940179-47940198 None:intergenic 35.0%
GAAAAGAAAGAGGTGAATTG+AGG - chr6_3:47940229-47940248 None:intergenic 35.0%
GATGAAGAGAGAGAAACAAA+GGG - chr6_3:47940286-47940305 None:intergenic 35.0%
TGATGAAGAGAGAGAAACAA+AGG - chr6_3:47940287-47940306 None:intergenic 35.0%
!!! GTGATTTTTTTGGGGGAATT+AGG - chr6_3:47940316-47940335 None:intergenic 35.0%
AAGTAATGTTTACCTCGATC+TGG - chr6_3:47940389-47940408 None:intergenic 35.0%
TTGTGCTTGAACTATAGCAT+GGG - chr6_3:47940821-47940840 None:intergenic 35.0%
TTTGTGCTTGAACTATAGCA+TGG - chr6_3:47940822-47940841 None:intergenic 35.0%
GTTGAGTCTTAATCAGAATC+AGG + chr6_3:47940927-47940946 Msa0952840:CDS 35.0%
AGTCTTAATCAGAATCAGGT+TGG + chr6_3:47940931-47940950 Msa0952840:CDS 35.0%
! TTGGTGGTTTAGGGAATTTA+GGG + chr6_3:47940950-47940969 Msa0952840:CDS 35.0%
AACGGTGAGAAATTATTCTG+AGG - chr6_3:47941063-47941082 None:intergenic 35.0%
! AGAGTTTTCTGAATACAAGG+CGG - chr6_3:47941276-47941295 None:intergenic 35.0%
! CGAAGAGTTTTCTGAATACA+AGG - chr6_3:47941279-47941298 None:intergenic 35.0%
TTAAAGAAAGCCGAGAACTT+TGG - chr6_3:47941462-47941481 None:intergenic 35.0%
TAATCATTACTTTGGATCCG+AGG + chr6_3:47941487-47941506 Msa0952840:CDS 35.0%
TTCACTTCAAAACCTTCTTG+AGG - chr6_3:47941564-47941583 None:intergenic 35.0%
!!! AAGAAGGTTTTGAAGTGAAG+AGG + chr6_3:47941565-47941584 Msa0952840:CDS 35.0%
!!! GTTTTGAAGTGAAGAGGAAA+GGG + chr6_3:47941571-47941590 Msa0952840:CDS 35.0%
!!! TTTTGAAGTGAAGAGGAAAG+GGG + chr6_3:47941572-47941591 Msa0952840:CDS 35.0%
! GAAAGGGGATAAAGAGTTTT+CGG + chr6_3:47941587-47941606 Msa0952840:CDS 35.0%
CATATCGCAGCAATAATTCT+TGG - chr6_3:47941705-47941724 None:intergenic 35.0%
CAAGAATTATTGCTGCGATA+TGG + chr6_3:47941703-47941722 Msa0952840:CDS 35.0%
GAAAAAAAGAAGGGTCGTTA+GGG - chr6_3:47941758-47941777 None:intergenic 35.0%
TGAAAAAAAGAAGGGTCGTT+AGG - chr6_3:47941759-47941778 None:intergenic 35.0%
!! AGCCTCTTCAGAAAGTATTT+GGG + chr6_3:47941787-47941806 Msa0952840:CDS 35.0%
!! GAAAGTATTTGGGGAAGAAA+AGG + chr6_3:47941797-47941816 Msa0952840:CDS 35.0%
AACTCCCTTTGAATAGGAAA+AGG - chr6_3:47941957-47941976 None:intergenic 35.0%
CTTGATTGAATCTCAAAGCA+GGG + chr6_3:47942127-47942146 Msa0952840:CDS 35.0%
!!! CAGATTTTTTCAACCAACCA+TGG + chr6_3:47942204-47942223 Msa0952840:CDS 35.0%
GAGTCAATCACAATCAATTC+CGG - chr6_3:47942357-47942376 None:intergenic 35.0%
!! TTGGTTTTCTCTCCTTTGAT+TGG - chr6_3:47942512-47942531 None:intergenic 35.0%
!!! CTTCTTTTTTGAAATGGGGA+AGG - chr6_3:47942620-47942639 None:intergenic 35.0%
!!! GGGACTTCTTTTTTGAAATG+GGG - chr6_3:47942624-47942643 None:intergenic 35.0%
!!! GGGGACTTCTTTTTTGAAAT+GGG - chr6_3:47942625-47942644 None:intergenic 35.0%
!!! AGGGGACTTCTTTTTTGAAA+TGG - chr6_3:47942626-47942645 None:intergenic 35.0%
! TGCTATTTGGCACAATGTAT+TGG + chr6_3:47942818-47942837 Msa0952840:intron 35.0%
TTGCAGGTCTTAGAAAATGA+TGG - chr6_3:47942887-47942906 None:intergenic 35.0%
TATCATACCATGGTCATACA+GGG - chr6_3:47942917-47942936 None:intergenic 35.0%
TATTGTTTGACAACATGAGC+AGG + chr6_3:47943100-47943119 Msa0952840:intron 35.0%
ATTGTTTGACAACATGAGCA+GGG + chr6_3:47943101-47943120 Msa0952840:intron 35.0%
!! ATTTCAGAATAAGGAGCACT+GGG - chr6_3:47943211-47943230 None:intergenic 35.0%
TGGAGCAGTATTCACAAATA+CGG - chr6_3:47943310-47943329 None:intergenic 35.0%
TCAGATTGTTAGGAGAAAGA+TGG + chr6_3:47943381-47943400 Msa0952840:three_prime_UTR 35.0%
AATCAAAGAATCCACCATTG+TGG - chr6_3:47943447-47943466 None:intergenic 35.0%
!! GCGTTTAGTTCTGAATGGTT+TGG - chr6_3:47940079-47940098 None:intergenic 40.0%
!! GTGAAGCGTTTAGTTCTGAA+TGG - chr6_3:47940084-47940103 None:intergenic 40.0%
TTAGCTAGGGTTTGGAAAAG+GGG - chr6_3:47940127-47940146 None:intergenic 40.0%
CTTTAGCTAGGGTTTGGAAA+AGG - chr6_3:47940129-47940148 None:intergenic 40.0%
! AGATGGTGAAGCTTTAGCTA+GGG - chr6_3:47940140-47940159 None:intergenic 40.0%
! AAGATGGTGAAGCTTTAGCT+AGG - chr6_3:47940141-47940160 None:intergenic 40.0%
GAGGAAGATGAAGATGAAGA+TGG - chr6_3:47940157-47940176 None:intergenic 40.0%
!! TTTTTGGGGGAATTAGGGTT+TGG - chr6_3:47940310-47940329 None:intergenic 40.0%
ATGGCTTCTTCTTCAATCAG+TGG + chr6_3:47940351-47940370 Msa0952840:five_prime_UTR 40.0%
! AACAACCCTTCTAAAGGCAT+TGG + chr6_3:47940640-47940659 Msa0952840:CDS 40.0%
! AAGCACCAATGCCTTTAGAA+GGG - chr6_3:47940648-47940667 None:intergenic 40.0%
!! TCATCATCCTTTGGTAATGC+TGG + chr6_3:47940670-47940689 Msa0952840:CDS 40.0%
CTTGGGCTTGTGAAAAAACA+GGG - chr6_3:47940723-47940742 None:intergenic 40.0%
TTGAAAACCAGCAGCCATTT+GGG - chr6_3:47940776-47940795 None:intergenic 40.0%
!!! AAATGGCTGCTGGTTTTCAA+GGG + chr6_3:47940776-47940795 Msa0952840:CDS 40.0%
TCAAGCACAAAATAAGGCTC+AGG + chr6_3:47940831-47940850 Msa0952840:CDS 40.0%
!! CTTAATCAGAATCAGGTTGG+TGG + chr6_3:47940934-47940953 Msa0952840:CDS 40.0%
!! AGAATCAGGTTGGTGGTTTA+GGG + chr6_3:47940941-47940960 Msa0952840:CDS 40.0%
!! GTTGGTGGTTTAGGGAATTT+AGG + chr6_3:47940949-47940968 Msa0952840:CDS 40.0%
TGGTGGTTTAGGGAATTTAG+GGG + chr6_3:47940951-47940970 Msa0952840:CDS 40.0%
TGAGAAACCAATGCAGGAAA+GGG + chr6_3:47941137-47941156 Msa0952840:CDS 40.0%
TGCGTATAAAGAGCAGATTC+CGG - chr6_3:47941177-47941196 None:intergenic 40.0%
! TGCTGCACTTTCTAGAAAGA+AGG + chr6_3:47941224-47941243 Msa0952840:CDS 40.0%
! TCTTAGGTATCGTGCGAATT+TGG - chr6_3:47941329-47941348 None:intergenic 40.0%
ACCGATGTATCCAAAGTTCT+CGG + chr6_3:47941449-47941468 Msa0952840:CDS 40.0%
! CACACAATAGTGTTGTTCTC+GGG - chr6_3:47941519-47941538 None:intergenic 40.0%
! CCACACAATAGTGTTGTTCT+CGG - chr6_3:47941520-47941539 None:intergenic 40.0%
CGAGAACAACACTATTGTGT+GGG + chr6_3:47941518-47941537 Msa0952840:CDS 40.0%
!!! GGTTTTGAAGTGAAGAGGAA+AGG + chr6_3:47941570-47941589 Msa0952840:CDS 40.0%
GGTGAAAGCTTAAACTTCTC+AGG - chr6_3:47941642-47941661 None:intergenic 40.0%
! TAAGCTTTCACCAGCATTGA+CGG + chr6_3:47941650-47941669 Msa0952840:CDS 40.0%
!! CAGCCTCTTCAGAAAGTATT+TGG + chr6_3:47941786-47941805 Msa0952840:CDS 40.0%
!! GCCTCTTCAGAAAGTATTTG+GGG + chr6_3:47941788-47941807 Msa0952840:CDS 40.0%
! TCCCCAAATACTTTCTGAAG+AGG - chr6_3:47941792-47941811 None:intergenic 40.0%
ATCTGATGCTCCAGAACTAT+AGG - chr6_3:47941876-47941895 None:intergenic 40.0%
! GGAGCATCAGATCAAACTAT+CGG + chr6_3:47941884-47941903 Msa0952840:CDS 40.0%
GAGCATCAGATCAAACTATC+GGG + chr6_3:47941885-47941904 Msa0952840:CDS 40.0%
ACATGTGATGAAGCGATATG+TGG + chr6_3:47942020-47942039 Msa0952840:CDS 40.0%
!! CCTGCTTTGAGATTCAATCA+AGG - chr6_3:47942129-47942148 None:intergenic 40.0%
CCTTGATTGAATCTCAAAGC+AGG + chr6_3:47942126-47942145 Msa0952840:CDS 40.0%
ATAGTGCTCAAAGCTTACCA+TGG - chr6_3:47942224-47942243 None:intergenic 40.0%
ATTAATTCACCATCGTCTGC+CGG + chr6_3:47942335-47942354 Msa0952840:intron 40.0%
! GCGCCTATTTTCATCTCATA+TGG + chr6_3:47942720-47942739 Msa0952840:intron 40.0%
GCGCCATATGAGATGAAAAT+AGG - chr6_3:47942726-47942745 None:intergenic 40.0%
!!! CATTTTCTAAGACCTGCAAC+TGG + chr6_3:47942888-47942907 Msa0952840:intron 40.0%
CTATCATACCATGGTCATAC+AGG - chr6_3:47942918-47942937 None:intergenic 40.0%
CTGTATGACCATGGTATGAT+AGG + chr6_3:47942916-47942935 Msa0952840:intron 40.0%
! GATTTCAGAATAAGGAGCAC+TGG - chr6_3:47943212-47943231 None:intergenic 40.0%
CAGTATTCACAAATACGGCA+TGG - chr6_3:47943305-47943324 None:intergenic 40.0%
GAATACTGCTCCATAGCATA+TGG + chr6_3:47943317-47943336 Msa0952840:three_prime_UTR 40.0%
GTTGTTGTAGTAGTCCACAA+TGG + chr6_3:47943430-47943449 Msa0952840:three_prime_UTR 40.0%
! GTGAAGCTTTAGCTAGGGTT+TGG - chr6_3:47940135-47940154 None:intergenic 45.0%
ATCTTCCTGAATCCAGATCG+AGG + chr6_3:47940374-47940393 Msa0952840:five_prime_UTR 45.0%
GTTTACCTCGATCTGGATTC+AGG - chr6_3:47940382-47940401 None:intergenic 45.0%
! GAAGCACCAATGCCTTTAGA+AGG - chr6_3:47940649-47940668 None:intergenic 45.0%
GGTGCTTCTTCATCATCCTT+TGG + chr6_3:47940661-47940680 Msa0952840:CDS 45.0%
GCTTGGGCTTGTGAAAAAAC+AGG - chr6_3:47940724-47940743 None:intergenic 45.0%
CTTGAAAACCAGCAGCCATT+TGG - chr6_3:47940777-47940796 None:intergenic 45.0%
!!! CAAATGGCTGCTGGTTTTCA+AGG + chr6_3:47940775-47940794 Msa0952840:CDS 45.0%
AGGCTCATTTGCAAGCTCAA+GGG + chr6_3:47940905-47940924 Msa0952840:CDS 45.0%
!! CAGAATCAGGTTGGTGGTTT+AGG + chr6_3:47940940-47940959 Msa0952840:CDS 45.0%
!! GTCCTTTGAAACCACCTATG+AGG + chr6_3:47941022-47941041 Msa0952840:CDS 45.0%
! TTTGAAACCACCTATGAGGC+CGG + chr6_3:47941026-47941045 Msa0952840:CDS 45.0%
!! TTCTGAGGCGAAAATCCAAC+CGG - chr6_3:47941048-47941067 None:intergenic 45.0%
GTTAGTTCCATCGGTCTCAA+CGG - chr6_3:47941081-47941100 None:intergenic 45.0%
!! CTTTCCTGCATTGGTTTCTC+AGG - chr6_3:47941138-47941157 None:intergenic 45.0%
CTGAGAAACCAATGCAGGAA+AGG + chr6_3:47941136-47941155 Msa0952840:CDS 45.0%
ACTATCTTCAGAGTCCACGT+CGG - chr6_3:47941369-47941388 None:intergenic 45.0%
! ACGTGGACTCTGAAGATAGT+TGG + chr6_3:47941369-47941388 Msa0952840:CDS 45.0%
! CGTGGACTCTGAAGATAGTT+GGG + chr6_3:47941370-47941389 Msa0952840:CDS 45.0%
! GACTCTGAAGATAGTTGGGA+GGG + chr6_3:47941374-47941393 Msa0952840:CDS 45.0%
! GAAGATAGTTGGGAGGGTAT+TGG + chr6_3:47941380-47941399 Msa0952840:CDS 45.0%
GCCGAGAACTTTGGATACAT+CGG - chr6_3:47941453-47941472 None:intergenic 45.0%
TTGTTCTCGGGATATAGCCT+CGG - chr6_3:47941507-47941526 None:intergenic 45.0%
CCGAGAACAACACTATTGTG+TGG + chr6_3:47941517-47941536 Msa0952840:CDS 45.0%
TCAAAACCTTCTTGAGGAGC+AGG - chr6_3:47941558-47941577 None:intergenic 45.0%
TGCGATATGGCACTATGTGA+AGG + chr6_3:47941716-47941735 Msa0952840:CDS 45.0%
TATGGCACTATGTGAAGGCT+AGG + chr6_3:47941721-47941740 Msa0952840:CDS 45.0%
TGATGCTCCAGAACTATAGG+TGG - chr6_3:47941873-47941892 None:intergenic 45.0%
TATCGGGAAATAGTCCAGCT+GGG + chr6_3:47941901-47941920 Msa0952840:CDS 45.0%
! GAGTGCTTGTTACGATGCAA+TGG + chr6_3:47941923-47941942 Msa0952840:CDS 45.0%
GCAGACAACTCCCTTTGAAT+AGG - chr6_3:47941963-47941982 None:intergenic 45.0%
AAGGGAGTTGTCTGCACTAT+TGG + chr6_3:47941968-47941987 Msa0952840:CDS 45.0%
! GAAAAATCCACGAGCATCGT+AGG + chr6_3:47942051-47942070 Msa0952840:CDS 45.0%
!!! TCTTTTTCAGCACTGCGACT+AGG - chr6_3:47942176-47942195 None:intergenic 45.0%
TGCTCAAAGCTTACCATGGT+TGG - chr6_3:47942220-47942239 None:intergenic 45.0%
CACAAATACGGCATGGAAGA+TGG - chr6_3:47943298-47943317 None:intergenic 45.0%
GTTGTAGTAGTCCACAATGG+TGG + chr6_3:47943433-47943452 Msa0952840:three_prime_UTR 45.0%
! TCTTGTTTGTGACGCAACAC+AGG + chr6_3:47943529-47943548 Msa0952840:three_prime_UTR 45.0%
!! TATAAAATAAAATAAAACAA+TGG - chr6_3:47942267-47942286 None:intergenic 5.0%
GGGCATTCCAGCATTACCAA+AGG - chr6_3:47940680-47940699 None:intergenic 50.0%
! TTTTTCACAAGCCCAAGCCC+AGG + chr6_3:47940726-47940745 Msa0952840:CDS 50.0%
TTGAGCTTGAGCTTGAGCCT+GGG - chr6_3:47940746-47940765 None:intergenic 50.0%
AGCTCAAGCTCAAGCCCAAA+TGG + chr6_3:47940759-47940778 Msa0952840:CDS 50.0%
AGTAGCTCATGCTCAGCTTC+AGG + chr6_3:47940885-47940904 Msa0952840:CDS 50.0%
CAGGCTCATTTGCAAGCTCA+AGG + chr6_3:47940904-47940923 Msa0952840:CDS 50.0%
GGCCTCATAGGTGGTTTCAA+AGG - chr6_3:47941027-47941046 None:intergenic 50.0%
GAAAATCCAACCGGCCTCAT+AGG - chr6_3:47941039-47941058 None:intergenic 50.0%
TTTCTCACCGTTGAGACCGA+TGG + chr6_3:47941071-47941090 Msa0952840:CDS 50.0%
GCTTCCTGAGAAACCAATGC+AGG + chr6_3:47941131-47941150 Msa0952840:CDS 50.0%
GAAACCAATGCAGGAAAGGG+TGG + chr6_3:47941140-47941159 Msa0952840:CDS 50.0%
!!! AAGGGTGGCTGCTATTTTGC+CGG + chr6_3:47941155-47941174 Msa0952840:CDS 50.0%
TCTCGAGTTTGAGTCTCGTG+TGG + chr6_3:47941200-47941219 Msa0952840:CDS 50.0%
! GGACTCTGAAGATAGTTGGG+AGG + chr6_3:47941373-47941392 Msa0952840:CDS 50.0%
!! GTTGGGAGGGTATTGGAAGA+TGG + chr6_3:47941387-47941406 Msa0952840:CDS 50.0%
GACGACTTCTGAACTACTCC+CGG - chr6_3:47941429-47941448 None:intergenic 50.0%
GCAAGAACTTCCGTCAATGC+TGG - chr6_3:47941663-47941682 None:intergenic 50.0%
!! CCAGAACTATAGGTGGTGGA+GGG - chr6_3:47941866-47941885 None:intergenic 50.0%
! TCCAGAACTATAGGTGGTGG+AGG - chr6_3:47941867-47941886 None:intergenic 50.0%
TGCTCCAGAACTATAGGTGG+TGG - chr6_3:47941870-47941889 None:intergenic 50.0%
CTATCGGGAAATAGTCCAGC+TGG + chr6_3:47941900-47941919 Msa0952840:CDS 50.0%
! AAATCCACGAGCATCGTAGG+AGG + chr6_3:47942054-47942073 Msa0952840:CDS 50.0%
CAATCAATTCCGGCAGACGA+TGG - chr6_3:47942347-47942366 None:intergenic 50.0%
TCTAGGTATCACGTGCTTCC+TGG - chr6_3:47943183-47943202 None:intergenic 50.0%
CTCGCAGGATCCATATGCTA+TGG - chr6_3:47943330-47943349 None:intergenic 50.0%
TTGAGCTTGAGCCTGGGCTT+GGG - chr6_3:47940740-47940759 None:intergenic 55.0%
CTTGAGCTTGAGCTTGAGCC+TGG - chr6_3:47940747-47940766 None:intergenic 55.0%
AGGGCAGTTTCCACAGTCAC+AGG + chr6_3:47940795-47940814 Msa0952840:CDS 55.0%
ATAGCATGGGCCTGTGACTG+TGG - chr6_3:47940808-47940827 None:intergenic 55.0%
TAAGGCTCAGGCTCAAGCTC+AGG + chr6_3:47940843-47940862 Msa0952840:CDS 55.0%
AAACCACCTATGAGGCCGGT+TGG + chr6_3:47941030-47941049 Msa0952840:CDS 55.0%
AATCCAACCGGCCTCATAGG+TGG - chr6_3:47941036-47941055 None:intergenic 55.0%
GCAGCAGGCGTTAGTTCCAT+CGG - chr6_3:47941090-47941109 None:intergenic 55.0%
AACTAACGCCTGCTGCTGCA+CGG + chr6_3:47941094-47941113 Msa0952840:CDS 55.0%
! GGCTCGGCATTTGGCTTCTT+AGG - chr6_3:47941345-47941364 None:intergenic 55.0%
ATCTTCAGAGTCCACGTCGG+AGG - chr6_3:47941366-47941385 None:intergenic 55.0%
GAACTACTCCCGGCTGATCA+GGG - chr6_3:47941419-47941438 None:intergenic 55.0%
TGAACTACTCCCGGCTGATC+AGG - chr6_3:47941420-47941439 None:intergenic 55.0%
CGATCACCTGCTCCTCAAGA+AGG + chr6_3:47941549-47941568 Msa0952840:CDS 55.0%
!! GGTGGTGGAGGGAACAAATG+TGG - chr6_3:47941855-47941874 None:intergenic 55.0%
CCCTCCACCACCTATAGTTC+TGG + chr6_3:47941863-47941882 Msa0952840:CDS 55.0%
TCGTAACAAGCACTCCCAGC+TGG - chr6_3:47941918-47941937 None:intergenic 55.0%
AGGAGGCGGGCATTCTTTCT+TGG + chr6_3:47942071-47942090 Msa0952840:CDS 55.0%
AGGGATCTGAAAGCTGCAGC+TGG + chr6_3:47942146-47942165 Msa0952840:CDS 55.0%
CATACAGGGTTGCCAGTTGC+AGG - chr6_3:47942903-47942922 None:intergenic 55.0%
CTGGCAACCCTGTATGACCA+TGG + chr6_3:47942907-47942926 Msa0952840:intron 55.0%
TTGAATCGCAAACCCGCTGC+AGG + chr6_3:47943147-47943166 Msa0952840:CDS 55.0%
! TGGAGCATCACTTCCTGCAG+CGG - chr6_3:47943163-47943182 None:intergenic 55.0%
!! AGGAGCACTGGGACTTCTCT+AGG - chr6_3:47943200-47943219 None:intergenic 55.0%
CAACTAGTTGCAGTGCTCGC+AGG - chr6_3:47943345-47943364 None:intergenic 55.0%
CTTGAGCTTGAGCCTGGGCT+TGG - chr6_3:47940741-47940760 None:intergenic 60.0%
GCTCAAGCCCAAATGGCTGC+TGG + chr6_3:47940766-47940785 Msa0952840:CDS 60.0%
TCGTCGTCGATGTCTACGCC+TGG + chr6_3:47940979-47940998 Msa0952840:CDS 60.0%
CGTCGTCGATGTCTACGCCT+GGG + chr6_3:47940980-47940999 Msa0952840:CDS 60.0%
TCGATGTCTACGCCTGGGAG+CGG + chr6_3:47940985-47941004 Msa0952840:CDS 60.0%
TTCTTCCTCCGTGCAGCAGC+AGG - chr6_3:47941105-47941124 None:intergenic 60.0%
GCAGCCACCCTTTCCTGCAT+TGG - chr6_3:47941147-47941166 None:intergenic 60.0%
!! TGGCGTTGACCCTGATCAGC+CGG + chr6_3:47941407-47941426 Msa0952840:CDS 60.0%
! TCCACGAGCATCGTAGGAGG+CGG + chr6_3:47942057-47942076 Msa0952840:CDS 60.0%
! GGAGCATCACTTCCTGCAGC+GGG - chr6_3:47943162-47943181 None:intergenic 60.0%
GCTGCAGGAAGTGATGCTCC+AGG + chr6_3:47943162-47943181 Msa0952840:CDS 60.0%
CGTTTCGCACTACCGCTCCC+AGG - chr6_3:47941000-47941019 None:intergenic 65.0%
GGGAGCGGTAGTGCGAAACG+TGG + chr6_3:47941000-47941019 Msa0952840:CDS 65.0%
TAACGCCTGCTGCTGCACGG+AGG + chr6_3:47941097-47941116 Msa0952840:CDS 65.0%
CACGTCGGAGGCTCGGCATT+TGG - chr6_3:47941354-47941373 None:intergenic 65.0%
CAAATGCCGAGCCTCCGACG+TGG + chr6_3:47941352-47941371 Msa0952840:CDS 65.0%
CAGAGTCCACGTCGGAGGCT+CGG - chr6_3:47941361-47941380 None:intergenic 65.0%
!! GGCGTTGACCCTGATCAGCC+GGG + chr6_3:47941408-47941427 Msa0952840:CDS 65.0%
! CCACGAGCATCGTAGGAGGC+GGG + chr6_3:47942058-47942077 Msa0952840:CDS 65.0%
CCCGCCTCCTACGATGCTCG+TGG - chr6_3:47942061-47942080 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 47940053 47943686 47940053 ID=Msa0952840;Name=Msa0952840
chr6_3 mRNA 47940053 47943686 47940053 ID=Msa0952840-mRNA-1;Parent=Msa0952840;Name=Msa0952840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=458|1|1|1|0.5|0.33|3|492|559
chr6_3 exon 47940053 47940395 47940053 ID=Msa0952840-mRNA-1:exon:10525;Parent=Msa0952840-mRNA-1
chr6_3 exon 47940504 47942225 47940504 ID=Msa0952840-mRNA-1:exon:10526;Parent=Msa0952840-mRNA-1
chr6_3 exon 47943122 47943686 47943122 ID=Msa0952840-mRNA-1:exon:10527;Parent=Msa0952840-mRNA-1
chr6_3 five_prime_UTR 47940053 47940395 47940053 ID=Msa0952840-mRNA-1:five_prime_utr;Parent=Msa0952840-mRNA-1
chr6_3 five_prime_UTR 47940504 47940618 47940504 ID=Msa0952840-mRNA-1:five_prime_utr;Parent=Msa0952840-mRNA-1
chr6_3 CDS 47940619 47942225 47940619 ID=Msa0952840-mRNA-1:cds;Parent=Msa0952840-mRNA-1
chr6_3 CDS 47943122 47943194 47943122 ID=Msa0952840-mRNA-1:cds;Parent=Msa0952840-mRNA-1
chr6_3 three_prime_UTR 47943195 47943686 47943195 ID=Msa0952840-mRNA-1:three_prime_utr;Parent=Msa0952840-mRNA-1
Gene Sequence

>Msa0952840

ATGTCTGTGAACAATAATAACAACAACCCTTCTAAAGGCATTGGTGCTTCTTCATCATCCTTTGGTAATGCTGGAATGCCCTCTAATTCTATGTCTACAAACCCTGTTTTTTCACAAGCCCAAGCCCAGGCTCAAGCTCAAGCTCAAGCTCAAGCCCAAATGGCTGCTGGTTTTCAAGGGCAGTTTCCACAGTCACAGGCCCATGCTATAGTTCAAGCACAAAATAAGGCTCAGGCTCAAGCTCAGGCTCATGCACAAGCTGCAGCAGTAGCTCATGCTCAGCTTCAGGCTCATTTGCAAGCTCAAGGGTTGAGTCTTAATCAGAATCAGGTTGGTGGTTTAGGGAATTTAGGGGTTTCATCGTCGTCGATGTCTACGCCTGGGAGCGGTAGTGCGAAACGTGGTCCTTTGAAACCACCTATGAGGCCGGTTGGATTTTCGCCTCAGAATAATTTCTCACCGTTGAGACCGATGGAACTAACGCCTGCTGCTGCACGGAGGAAGAAGCAGAAGCTTCCTGAGAAACCAATGCAGGAAAGGGTGGCTGCTATTTTGCCGGAATCTGCTCTTTATACGCAGCTTCTCGAGTTTGAGTCTCGTGTGGATGCTGCACTTTCTAGAAAGAAGGTTGATATTCAGGAAGCGCTGAAAAATCCGCCTTGTATTCAGAAAACTCTTCGTATTTATGTATTTAACACTTTTGCAAACCAAATTCGCACGATACCTAAGAAGCCAAATGCCGAGCCTCCGACGTGGACTCTGAAGATAGTTGGGAGGGTATTGGAAGATGGCGTTGACCCTGATCAGCCGGGAGTAGTTCAGAAGTCGTCACCGATGTATCCAAAGTTCTCGGCTTTCTTTAAAAAAGTAATCATTACTTTGGATCCGAGGCTATATCCCGAGAACAACACTATTGTGTGGGATAGTTATCGATCACCTGCTCCTCAAGAAGGTTTTGAAGTGAAGAGGAAAGGGGATAAAGAGTTTTCGGTGAATATACAGTTTTATATGAATTATGCACCTGAGAAGTTTAAGCTTTCACCAGCATTGACGGAAGTTCTTGCTATCGACGTTGATACTCGTCCAAGAATTATTGCTGCGATATGGCACTATGTGAAGGCTAGGAAACTACAGAACCCTAACGACCCTTCTTTTTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGGGAAGAAAAGGTGAAGTTCACAACAGTTTCGCAGAAAATATCGCCACATTTGTTCCCTCCACCACCTATAGTTCTGGAGCATCAGATCAAACTATCGGGAAATAGTCCAGCTGGGAGTGCTTGTTACGATGCAATGGTTGATATTCCTTTTCCTATTCAAAGGGAGTTGTCTGCACTATTGGCAAATGTCGAGAAGAACAAAGAGATTGAAACATGTGATGAAGCGATATGTGGAATCATTAGAAAAATCCACGAGCATCGTAGGAGGCGGGCATTCTTTCTTGGTTTCAGTCAATCTCCAGTAGAATTTATTAATGCCTTGATTGAATCTCAAAGCAGGGATCTGAAAGCTGCAGCTGGAGAACCTAGTCGCAGTGCTGAAAAAGAGCGTCGAGCAGATTTTTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATACTTGAATCGCAAACCCGCTGCAGGAAGTGATGCTCCAGGAAGCACGTGA
Protein sequence

>Msa0952840

MSVNNNNNNPSKGIGASSSSFGNAGMPSNSMSTNPVFSQAQAQAQAQAQAQAQMAAGFQGQFPQSQAHAIVQAQNKAQAQAQAHAQAAAVAHAQLQAHLQAQGLSLNQNQVGGLGNLGVSSSSMSTPGSGSAKRGPLKPPMRPVGFSPQNNFSPLRPMELTPAAARRKKQKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKKVIITLDPRLYPENNTIVWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKVKFTTVSQKISPHLFPPPPIVLEHQIKLSGNSPAGSACYDAMVDIPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRADFFNQPWVEDAVIRYLNRKPAAGSDAPGST*