Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943960 | KEH25542.1 | 96.591 | 88 | 3 | 0 | 4 | 91 | 2 | 89 | 1.74e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943960 | A0A072U791 | 96.591 | 88 | 3 | 0 | 4 | 91 | 2 | 89 | 8.31e-55 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0878210 | Msa0943960 | 0.971427 | 3.807359e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943960 | MtrunA17_Chr6g0460741 | 96.591 | 88 | 3 | 0 | 4 | 91 | 2 | 89 | 1.60e-58 | 174 |
| Msa0943960 | MtrunA17_Chr6g0460651 | 33.333 | 96 | 59 | 3 | 1 | 91 | 4 | 99 | 2.51e-13 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATTGTGTTTATCATTT+TGG | 0.111532 | 6_3:-20276092 | Msa0943960:CDS |
| AGGATTTGATTATGAGCTTA+AGG | 0.343702 | 6_3:-20274496 | Msa0943960:CDS |
| TTTGGGTCATGATGATGATT+TGG | 0.350274 | 6_3:+20274389 | None:intergenic |
| CAGATCAATATCCATCGTTT+TGG | 0.367728 | 6_3:+20275918 | None:intergenic |
| CAAAACGATGGATATTGATC+TGG | 0.375408 | 6_3:-20275917 | Msa0943960:CDS |
| TGATGATTTGGTCCTGTTCC+AGG | 0.376998 | 6_3:+20274401 | None:intergenic |
| TGATCAGCTCTTTGACTTGA+AGG | 0.379771 | 6_3:-20274468 | Msa0943960:CDS |
| CAAAGAAACTTACTTGTTGA+AGG | 0.401416 | 6_3:+20276040 | None:intergenic |
| CTTTCAGATTACCCTGGAAC+AGG | 0.451144 | 6_3:-20274413 | Msa0943960:CDS |
| AAAACGATGGATATTGATCT+GGG | 0.522392 | 6_3:-20275916 | Msa0943960:CDS |
| CATCATGACCCAAAATCCCC+TGG | 0.552704 | 6_3:-20274380 | Msa0943960:CDS |
| CTGTTCCAGGGTAATCTGAA+AGG | 0.585444 | 6_3:+20274414 | None:intergenic |
| GATGATTTGGTCCTGTTCCA+GGG | 0.588699 | 6_3:+20274402 | None:intergenic |
| TGAAAAGAGAAGAATGATGA+CGG | 0.602164 | 6_3:-20274438 | Msa0943960:CDS |
| AACGATGGATATTGATCTGG+GGG | 0.605257 | 6_3:-20275914 | Msa0943960:CDS |
| ACGGACCTTTCAGATTACCC+TGG | 0.624430 | 6_3:-20274419 | Msa0943960:CDS |
| AAACGATGGATATTGATCTG+GGG | 0.659701 | 6_3:-20275915 | Msa0943960:CDS |
| GAGCCTCATGACCAAAACGA+TGG | 0.676654 | 6_3:-20275929 | Msa0943960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATATATATATATATTAG+AGG | + | chr6_3:20274622-20274641 | None:intergenic | 10.0% |
| !! | AAAAAAAGTTAAATATGAAA+TGG | + | chr6_3:20275179-20275198 | None:intergenic | 10.0% |
| !!! | TTTGTTAGTTTTTTTTTTTT+AGG | - | chr6_3:20275795-20275814 | Msa0943960:intron | 10.0% |
| !!! | TTGTTAGTTTTTTTTTTTTA+GGG | - | chr6_3:20275796-20275815 | Msa0943960:intron | 10.0% |
| !!! | GTATAATTTAAAATTTGATA+GGG | + | chr6_3:20275948-20275967 | None:intergenic | 10.0% |
| !!! | AGTATAATTTAAAATTTGAT+AGG | + | chr6_3:20275949-20275968 | None:intergenic | 10.0% |
| !! | TGTATATATATATATATTAG+AGG | + | chr6_3:20274622-20274641 | None:intergenic | 10.0% |
| !! | AAAAAAAGTTAAATATGAAA+TGG | + | chr6_3:20275179-20275198 | None:intergenic | 10.0% |
| !!! | TTTGTTAGTTTTTTTTTTTT+AGG | - | chr6_3:20275795-20275814 | Msa0943960:intron | 10.0% |
| !!! | TTGTTAGTTTTTTTTTTTTA+GGG | - | chr6_3:20275796-20275815 | Msa0943960:intron | 10.0% |
| !!! | GTATAATTTAAAATTTGATA+GGG | + | chr6_3:20275948-20275967 | None:intergenic | 10.0% |
| !!! | AGTATAATTTAAAATTTGAT+AGG | + | chr6_3:20275949-20275968 | None:intergenic | 10.0% |
| !! | ATATATATTGCACAATTAAA+AGG | - | chr6_3:20274507-20274526 | Msa0943960:intron | 15.0% |
| !! | ATAAGATAAAAATAAGTTCA+AGG | - | chr6_3:20275082-20275101 | Msa0943960:intron | 15.0% |
| !! | TAAGATAAAAATAAGTTCAA+GGG | - | chr6_3:20275083-20275102 | Msa0943960:intron | 15.0% |
| !! | TAACTATTGATGAAAAATAA+AGG | - | chr6_3:20275267-20275286 | Msa0943960:intron | 15.0% |
| !!! | CTTAATTTTATGTAACAATT+TGG | - | chr6_3:20275317-20275336 | Msa0943960:intron | 15.0% |
| !! | TTGAAATGAAAAAAAGATAA+AGG | - | chr6_3:20275499-20275518 | Msa0943960:intron | 15.0% |
| !! | TTTACCTAAAATTAAGTTAA+AGG | - | chr6_3:20275530-20275549 | Msa0943960:intron | 15.0% |
| !!! | ATTTTATTTATTTTCCGAAA+TGG | - | chr6_3:20275740-20275759 | Msa0943960:intron | 15.0% |
| !!! | TTTTATTTATTTTCCGAAAT+GGG | - | chr6_3:20275741-20275760 | Msa0943960:intron | 15.0% |
| !!! | GTTGTTAGTTATTTTTTTTT+TGG | - | chr6_3:20275763-20275782 | Msa0943960:intron | 15.0% |
| !!! | TGTTAGTTTTTTTTTTTTAG+GGG | - | chr6_3:20275797-20275816 | Msa0943960:intron | 15.0% |
| !! | ATATATATTGCACAATTAAA+AGG | - | chr6_3:20274507-20274526 | Msa0943960:intron | 15.0% |
| !! | ATAAGATAAAAATAAGTTCA+AGG | - | chr6_3:20275082-20275101 | Msa0943960:intron | 15.0% |
| !! | TAAGATAAAAATAAGTTCAA+GGG | - | chr6_3:20275083-20275102 | Msa0943960:intron | 15.0% |
| !! | TAACTATTGATGAAAAATAA+AGG | - | chr6_3:20275267-20275286 | Msa0943960:intron | 15.0% |
| !!! | CTTAATTTTATGTAACAATT+TGG | - | chr6_3:20275317-20275336 | Msa0943960:intron | 15.0% |
| !! | TTGAAATGAAAAAAAGATAA+AGG | - | chr6_3:20275499-20275518 | Msa0943960:intron | 15.0% |
| !! | TTTACCTAAAATTAAGTTAA+AGG | - | chr6_3:20275530-20275549 | Msa0943960:intron | 15.0% |
| !!! | ATTTTATTTATTTTCCGAAA+TGG | - | chr6_3:20275740-20275759 | Msa0943960:intron | 15.0% |
| !!! | TTTTATTTATTTTCCGAAAT+GGG | - | chr6_3:20275741-20275760 | Msa0943960:intron | 15.0% |
| !!! | GTTGTTAGTTATTTTTTTTT+TGG | - | chr6_3:20275763-20275782 | Msa0943960:intron | 15.0% |
| !!! | TGTTAGTTTTTTTTTTTTAG+GGG | - | chr6_3:20275797-20275816 | Msa0943960:intron | 15.0% |
| !!! | AATGATAAACACAATTTTGA+TGG | + | chr6_3:20274389-20274408 | None:intergenic | 20.0% |
| !!! | CAAAATTGTGTTTATCATTT+TGG | - | chr6_3:20274390-20274409 | Msa0943960:CDS | 20.0% |
| !!! | TTTTATGCATACTCTTATTT+AGG | + | chr6_3:20274713-20274732 | None:intergenic | 20.0% |
| !!! | AAAAATAACTAGCTAGTTTA+TGG | + | chr6_3:20274852-20274871 | None:intergenic | 20.0% |
| !! | TCATAAAAATTACACTTTCA+CGG | - | chr6_3:20274878-20274897 | Msa0943960:intron | 20.0% |
| !! | AAATAACAATGAACTAATCA+AGG | + | chr6_3:20274983-20275002 | None:intergenic | 20.0% |
| !! | AAGATAAAAATAAGTTCAAG+GGG | - | chr6_3:20275084-20275103 | Msa0943960:intron | 20.0% |
| !! | GTTACATAAAATTAAGCTAA+GGG | + | chr6_3:20275313-20275332 | None:intergenic | 20.0% |
| !! | TGTTACATAAAATTAAGCTA+AGG | + | chr6_3:20275314-20275333 | None:intergenic | 20.0% |
| !! | TCATATGTAAATTGATCAAA+AGG | - | chr6_3:20275470-20275489 | Msa0943960:intron | 20.0% |
| !!! | CTTAATTTTAGGTAAAAGTT+TGG | + | chr6_3:20275526-20275545 | None:intergenic | 20.0% |
| !!! | AAGTCCTTTAACTTAATTTT+AGG | + | chr6_3:20275537-20275556 | None:intergenic | 20.0% |
| !! | GTTTAAATTGTTTACCAAAA+TGG | - | chr6_3:20275666-20275685 | Msa0943960:intron | 20.0% |
| !!! | AATGATAAACACAATTTTGA+TGG | + | chr6_3:20274389-20274408 | None:intergenic | 20.0% |
| !!! | CAAAATTGTGTTTATCATTT+TGG | - | chr6_3:20274390-20274409 | Msa0943960:CDS | 20.0% |
| !!! | TTTTATGCATACTCTTATTT+AGG | + | chr6_3:20274713-20274732 | None:intergenic | 20.0% |
| !!! | AAAAATAACTAGCTAGTTTA+TGG | + | chr6_3:20274852-20274871 | None:intergenic | 20.0% |
| !! | TCATAAAAATTACACTTTCA+CGG | - | chr6_3:20274878-20274897 | Msa0943960:intron | 20.0% |
| !! | AAATAACAATGAACTAATCA+AGG | + | chr6_3:20274983-20275002 | None:intergenic | 20.0% |
| !! | AAGATAAAAATAAGTTCAAG+GGG | - | chr6_3:20275084-20275103 | Msa0943960:intron | 20.0% |
| !! | GTTACATAAAATTAAGCTAA+GGG | + | chr6_3:20275313-20275332 | None:intergenic | 20.0% |
| !! | TGTTACATAAAATTAAGCTA+AGG | + | chr6_3:20275314-20275333 | None:intergenic | 20.0% |
| !! | TCATATGTAAATTGATCAAA+AGG | - | chr6_3:20275470-20275489 | Msa0943960:intron | 20.0% |
| !!! | CTTAATTTTAGGTAAAAGTT+TGG | + | chr6_3:20275526-20275545 | None:intergenic | 20.0% |
| !!! | AAGTCCTTTAACTTAATTTT+AGG | + | chr6_3:20275537-20275556 | None:intergenic | 20.0% |
| !! | GTTTAAATTGTTTACCAAAA+TGG | - | chr6_3:20275666-20275685 | Msa0943960:intron | 20.0% |
| !!! | TCTTTGCTTTTAACCTTTTT+AGG | - | chr6_3:20274459-20274478 | Msa0943960:CDS | 25.0% |
| !!! | CTTTGCTTTTAACCTTTTTA+GGG | - | chr6_3:20274460-20274479 | Msa0943960:CDS | 25.0% |
| ! | ACGCATTATGTGATTATATA+GGG | - | chr6_3:20274531-20274550 | Msa0943960:intron | 25.0% |
| !!! | TTTTTTTTTTTCCTCCCTAA+GGG | - | chr6_3:20274647-20274666 | Msa0943960:intron | 25.0% |
| !!! | GATTAGTTCATTGTTATTTG+TGG | - | chr6_3:20274984-20275003 | Msa0943960:intron | 25.0% |
| ! | TACTTGTACTTCATCTATAT+GGG | + | chr6_3:20275121-20275140 | None:intergenic | 25.0% |
| ! | AGTAAGCAATTCAATTTAGA+TGG | - | chr6_3:20275229-20275248 | Msa0943960:intron | 25.0% |
| ! | TTTCATTTCAAATCTGTCTT+TGG | - | chr6_3:20275359-20275378 | Msa0943960:intron | 25.0% |
| ! | ATTATCAAGCTTCAAATTCA+TGG | + | chr6_3:20275450-20275469 | None:intergenic | 25.0% |
| ! | AAGGACTTGTCAAAAATTAA+TGG | - | chr6_3:20275549-20275568 | Msa0943960:intron | 25.0% |
| ! | AAATAACTAACAACCCATTT+CGG | + | chr6_3:20275757-20275776 | None:intergenic | 25.0% |
| ! | AAAATTTGATAGGGAATGTA+AGG | + | chr6_3:20275939-20275958 | None:intergenic | 25.0% |
| !!! | TCTTTGCTTTTAACCTTTTT+AGG | - | chr6_3:20274459-20274478 | Msa0943960:CDS | 25.0% |
| !!! | CTTTGCTTTTAACCTTTTTA+GGG | - | chr6_3:20274460-20274479 | Msa0943960:CDS | 25.0% |
| ! | ACGCATTATGTGATTATATA+GGG | - | chr6_3:20274531-20274550 | Msa0943960:intron | 25.0% |
| !!! | TTTTTTTTTTTCCTCCCTAA+GGG | - | chr6_3:20274647-20274666 | Msa0943960:intron | 25.0% |
| !!! | GATTAGTTCATTGTTATTTG+TGG | - | chr6_3:20274984-20275003 | Msa0943960:intron | 25.0% |
| ! | TACTTGTACTTCATCTATAT+GGG | + | chr6_3:20275121-20275140 | None:intergenic | 25.0% |
| ! | AGTAAGCAATTCAATTTAGA+TGG | - | chr6_3:20275229-20275248 | Msa0943960:intron | 25.0% |
| ! | TTTCATTTCAAATCTGTCTT+TGG | - | chr6_3:20275359-20275378 | Msa0943960:intron | 25.0% |
| ! | ATTATCAAGCTTCAAATTCA+TGG | + | chr6_3:20275450-20275469 | None:intergenic | 25.0% |
| ! | AAGGACTTGTCAAAAATTAA+TGG | - | chr6_3:20275549-20275568 | Msa0943960:intron | 25.0% |
| ! | AAATAACTAACAACCCATTT+CGG | + | chr6_3:20275757-20275776 | None:intergenic | 25.0% |
| ! | AAAATTTGATAGGGAATGTA+AGG | + | chr6_3:20275939-20275958 | None:intergenic | 25.0% |
| !! | GATAAACACAATTTTGATGG+TGG | + | chr6_3:20274386-20274405 | None:intergenic | 30.0% |
| ! | CAAAGAAACTTACTTGTTGA+AGG | + | chr6_3:20274445-20274464 | None:intergenic | 30.0% |
| ! | AAAGCATCAAAACCCTAAAA+AGG | + | chr6_3:20274475-20274494 | None:intergenic | 30.0% |
| CACGCATTATGTGATTATAT+AGG | - | chr6_3:20274530-20274549 | Msa0943960:intron | 30.0% | |
| AAAACGATGGATATTGATCT+GGG | - | chr6_3:20274566-20274585 | Msa0943960:intron | 30.0% | |
| AGGGAGGAAAAAAAAAAAGA+TGG | + | chr6_3:20274645-20274664 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTTTTCCTCCCTA+AGG | - | chr6_3:20274646-20274665 | Msa0943960:intron | 30.0% |
| !!! | TTTTTTTTTTCCTCCCTAAG+GGG | - | chr6_3:20274648-20274667 | Msa0943960:intron | 30.0% |
| CAAAATATATGAACCCCTTA+GGG | + | chr6_3:20274664-20274683 | None:intergenic | 30.0% | |
| ACAAAATATATGAACCCCTT+AGG | + | chr6_3:20274665-20274684 | None:intergenic | 30.0% | |
| AGTATGCATAAAACCTCTAA+GGG | - | chr6_3:20274720-20274739 | Msa0943960:intron | 30.0% | |
| ! | TGTTATTTGTGGAATCCAAA+AGG | - | chr6_3:20274995-20275014 | Msa0943960:intron | 30.0% |
| CTACTTGTACTTCATCTATA+TGG | + | chr6_3:20275122-20275141 | None:intergenic | 30.0% | |
| ! | AATTAATTGACGCACCATTT+TGG | + | chr6_3:20275683-20275702 | None:intergenic | 30.0% |
| ! | TATACTCTTGACTAATTTGC+AGG | - | chr6_3:20275963-20275982 | Msa0943960:intron | 30.0% |
| AGGATTTGATTATGAGCTTA+AGG | - | chr6_3:20275986-20276005 | Msa0943960:intron | 30.0% | |
| TGAAAAGAGAAGAATGATGA+CGG | - | chr6_3:20276044-20276063 | Msa0943960:intron | 30.0% | |
| !! | GATAAACACAATTTTGATGG+TGG | + | chr6_3:20274386-20274405 | None:intergenic | 30.0% |
| ! | CAAAGAAACTTACTTGTTGA+AGG | + | chr6_3:20274445-20274464 | None:intergenic | 30.0% |
| ! | AAAGCATCAAAACCCTAAAA+AGG | + | chr6_3:20274475-20274494 | None:intergenic | 30.0% |
| CACGCATTATGTGATTATAT+AGG | - | chr6_3:20274530-20274549 | Msa0943960:intron | 30.0% | |
| AAAACGATGGATATTGATCT+GGG | - | chr6_3:20274566-20274585 | Msa0943960:intron | 30.0% | |
| AGGGAGGAAAAAAAAAAAGA+TGG | + | chr6_3:20274645-20274664 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTTTTCCTCCCTA+AGG | - | chr6_3:20274646-20274665 | Msa0943960:intron | 30.0% |
| !!! | TTTTTTTTTTCCTCCCTAAG+GGG | - | chr6_3:20274648-20274667 | Msa0943960:intron | 30.0% |
| CAAAATATATGAACCCCTTA+GGG | + | chr6_3:20274664-20274683 | None:intergenic | 30.0% | |
| ACAAAATATATGAACCCCTT+AGG | + | chr6_3:20274665-20274684 | None:intergenic | 30.0% | |
| AGTATGCATAAAACCTCTAA+GGG | - | chr6_3:20274720-20274739 | Msa0943960:intron | 30.0% | |
| ! | TGTTATTTGTGGAATCCAAA+AGG | - | chr6_3:20274995-20275014 | Msa0943960:intron | 30.0% |
| CTACTTGTACTTCATCTATA+TGG | + | chr6_3:20275122-20275141 | None:intergenic | 30.0% | |
| ! | AATTAATTGACGCACCATTT+TGG | + | chr6_3:20275683-20275702 | None:intergenic | 30.0% |
| ! | TATACTCTTGACTAATTTGC+AGG | - | chr6_3:20275963-20275982 | Msa0943960:intron | 30.0% |
| AGGATTTGATTATGAGCTTA+AGG | - | chr6_3:20275986-20276005 | Msa0943960:intron | 30.0% | |
| TGAAAAGAGAAGAATGATGA+CGG | - | chr6_3:20276044-20276063 | Msa0943960:intron | 30.0% | |
| ! | CAGATCAATATCCATCGTTT+TGG | + | chr6_3:20274567-20274586 | None:intergenic | 35.0% |
| CAAAACGATGGATATTGATC+TGG | - | chr6_3:20274565-20274584 | Msa0943960:intron | 35.0% | |
| AAACGATGGATATTGATCTG+GGG | - | chr6_3:20274567-20274586 | Msa0943960:intron | 35.0% | |
| GAGTATGCATAAAACCTCTA+AGG | - | chr6_3:20274719-20274738 | Msa0943960:intron | 35.0% | |
| AAATACATGCCTTGTAGCTA+GGG | + | chr6_3:20274759-20274778 | None:intergenic | 35.0% | |
| ! | ATCATGTGTCAGTAACCTTT+TGG | + | chr6_3:20275013-20275032 | None:intergenic | 35.0% |
| TAGGGAATGTAAGGATGATT+TGG | + | chr6_3:20275930-20275949 | None:intergenic | 35.0% | |
| ! | TTTGGGTCATGATGATGATT+TGG | + | chr6_3:20276096-20276115 | None:intergenic | 35.0% |
| ! | CAGATCAATATCCATCGTTT+TGG | + | chr6_3:20274567-20274586 | None:intergenic | 35.0% |
| CAAAACGATGGATATTGATC+TGG | - | chr6_3:20274565-20274584 | Msa0943960:intron | 35.0% | |
| AAACGATGGATATTGATCTG+GGG | - | chr6_3:20274567-20274586 | Msa0943960:intron | 35.0% | |
| GAGTATGCATAAAACCTCTA+AGG | - | chr6_3:20274719-20274738 | Msa0943960:intron | 35.0% | |
| AAATACATGCCTTGTAGCTA+GGG | + | chr6_3:20274759-20274778 | None:intergenic | 35.0% | |
| ! | ATCATGTGTCAGTAACCTTT+TGG | + | chr6_3:20275013-20275032 | None:intergenic | 35.0% |
| TAGGGAATGTAAGGATGATT+TGG | + | chr6_3:20275930-20275949 | None:intergenic | 35.0% | |
| ! | TTTGGGTCATGATGATGATT+TGG | + | chr6_3:20276096-20276115 | None:intergenic | 35.0% |
| !! | TATCCATCGTTTTGGTCATG+AGG | + | chr6_3:20274559-20274578 | None:intergenic | 40.0% |
| AACGATGGATATTGATCTGG+GGG | - | chr6_3:20274568-20274587 | Msa0943960:intron | 40.0% | |
| AATATATGAACCCCTTAGGG+AGG | + | chr6_3:20274661-20274680 | None:intergenic | 40.0% | |
| CAAATACATGCCTTGTAGCT+AGG | + | chr6_3:20274760-20274779 | None:intergenic | 40.0% | |
| CTAGCTACAAGGCATGTATT+TGG | - | chr6_3:20274758-20274777 | Msa0943960:intron | 40.0% | |
| ATGATGAGATCTGTGTGACT+CGG | - | chr6_3:20274937-20274956 | Msa0943960:intron | 40.0% | |
| ! | ACTCTTGACTAATTTGCAGG+AGG | - | chr6_3:20275966-20275985 | Msa0943960:intron | 40.0% |
| !! | TGATCAGCTCTTTGACTTGA+AGG | - | chr6_3:20276014-20276033 | Msa0943960:intron | 40.0% |
| ! | ATGCTTTTCCAGGGGATTTT+GGG | + | chr6_3:20276113-20276132 | None:intergenic | 40.0% |
| ! | TATGCTTTTCCAGGGGATTT+TGG | + | chr6_3:20276114-20276133 | None:intergenic | 40.0% |
| !! | TATCCATCGTTTTGGTCATG+AGG | + | chr6_3:20274559-20274578 | None:intergenic | 40.0% |
| AACGATGGATATTGATCTGG+GGG | - | chr6_3:20274568-20274587 | Msa0943960:intron | 40.0% | |
| AATATATGAACCCCTTAGGG+AGG | + | chr6_3:20274661-20274680 | None:intergenic | 40.0% | |
| CAAATACATGCCTTGTAGCT+AGG | + | chr6_3:20274760-20274779 | None:intergenic | 40.0% | |
| CTAGCTACAAGGCATGTATT+TGG | - | chr6_3:20274758-20274777 | Msa0943960:intron | 40.0% | |
| ATGATGAGATCTGTGTGACT+CGG | - | chr6_3:20274937-20274956 | Msa0943960:intron | 40.0% | |
| ! | ACTCTTGACTAATTTGCAGG+AGG | - | chr6_3:20275966-20275985 | Msa0943960:intron | 40.0% |
| !! | TGATCAGCTCTTTGACTTGA+AGG | - | chr6_3:20276014-20276033 | Msa0943960:intron | 40.0% |
| ! | ATGCTTTTCCAGGGGATTTT+GGG | + | chr6_3:20276113-20276132 | None:intergenic | 40.0% |
| ! | TATGCTTTTCCAGGGGATTT+TGG | + | chr6_3:20276114-20276133 | None:intergenic | 40.0% |
| CAGAATAAGCATGCCCTTAG+AGG | + | chr6_3:20274736-20274755 | None:intergenic | 45.0% | |
| CTTATTCTGCCCTAGCTACA+AGG | - | chr6_3:20274747-20274766 | Msa0943960:intron | 45.0% | |
| !! | TGTGTGACTCGGTTACTACT+TGG | - | chr6_3:20274948-20274967 | Msa0943960:intron | 45.0% |
| !! | GGATGATTTGGTGACTGAGA+TGG | + | chr6_3:20275918-20275937 | None:intergenic | 45.0% |
| CTGTTCCAGGGTAATCTGAA+AGG | + | chr6_3:20276071-20276090 | None:intergenic | 45.0% | |
| CTTTCAGATTACCCTGGAAC+AGG | - | chr6_3:20276069-20276088 | Msa0943960:CDS | 45.0% | |
| !! | GATGATTTGGTCCTGTTCCA+GGG | + | chr6_3:20276083-20276102 | None:intergenic | 45.0% |
| !! | TGATGATTTGGTCCTGTTCC+AGG | + | chr6_3:20276084-20276103 | None:intergenic | 45.0% |
| CAGAATAAGCATGCCCTTAG+AGG | + | chr6_3:20274736-20274755 | None:intergenic | 45.0% | |
| CTTATTCTGCCCTAGCTACA+AGG | - | chr6_3:20274747-20274766 | Msa0943960:intron | 45.0% | |
| !! | TGTGTGACTCGGTTACTACT+TGG | - | chr6_3:20274948-20274967 | Msa0943960:intron | 45.0% |
| !! | GGATGATTTGGTGACTGAGA+TGG | + | chr6_3:20275918-20275937 | None:intergenic | 45.0% |
| CTGTTCCAGGGTAATCTGAA+AGG | + | chr6_3:20276071-20276090 | None:intergenic | 45.0% | |
| CTTTCAGATTACCCTGGAAC+AGG | - | chr6_3:20276069-20276088 | Msa0943960:CDS | 45.0% | |
| !! | GATGATTTGGTCCTGTTCCA+GGG | + | chr6_3:20276083-20276102 | None:intergenic | 45.0% |
| !! | TGATGATTTGGTCCTGTTCC+AGG | + | chr6_3:20276084-20276103 | None:intergenic | 45.0% |
| !! | TGAAAAATAAAATAAAATAA+AGG | + | chr6_3:20275344-20275363 | None:intergenic | 5.0% |
| !! | TGAAAAATAAAATAAAATAA+AGG | + | chr6_3:20275344-20275363 | None:intergenic | 5.0% |
| GAGCCTCATGACCAAAACGA+TGG | - | chr6_3:20274553-20274572 | Msa0943960:intron | 50.0% | |
| GGATATTGATCTGGGGGCTA+AGG | - | chr6_3:20274574-20274593 | Msa0943960:intron | 50.0% | |
| ACGGACCTTTCAGATTACCC+TGG | - | chr6_3:20276063-20276082 | Msa0943960:CDS | 50.0% | |
| CATCATGACCCAAAATCCCC+TGG | - | chr6_3:20276102-20276121 | Msa0943960:CDS | 50.0% | |
| GAGCCTCATGACCAAAACGA+TGG | - | chr6_3:20274553-20274572 | Msa0943960:intron | 50.0% | |
| GGATATTGATCTGGGGGCTA+AGG | - | chr6_3:20274574-20274593 | Msa0943960:intron | 50.0% | |
| ACGGACCTTTCAGATTACCC+TGG | - | chr6_3:20276063-20276082 | Msa0943960:CDS | 50.0% | |
| CATCATGACCCAAAATCCCC+TGG | - | chr6_3:20276102-20276121 | Msa0943960:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 20274370 | 20276134 | 20274370 | ID=Msa0943960;Name=Msa0943960 |
| chr6_3 | mRNA | 20274370 | 20276134 | 20274370 | ID=Msa0943960-mRNA-1;Parent=Msa0943960;Name=Msa0943960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|91 |
| chr6_3 | exon | 20276053 | 20276134 | 20276053 | ID=Msa0943960-mRNA-1:exon:6023;Parent=Msa0943960-mRNA-1 |
| chr6_3 | exon | 20275909 | 20275952 | 20275909 | ID=Msa0943960-mRNA-1:exon:6022;Parent=Msa0943960-mRNA-1 |
| chr6_3 | exon | 20274370 | 20274519 | 20274370 | ID=Msa0943960-mRNA-1:exon:6021;Parent=Msa0943960-mRNA-1 |
| chr6_3 | CDS | 20276053 | 20276134 | 20276053 | ID=Msa0943960-mRNA-1:cds;Parent=Msa0943960-mRNA-1 |
| chr6_3 | CDS | 20275909 | 20275952 | 20275909 | ID=Msa0943960-mRNA-1:cds;Parent=Msa0943960-mRNA-1 |
| chr6_3 | CDS | 20274370 | 20274519 | 20274370 | ID=Msa0943960-mRNA-1:cds;Parent=Msa0943960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
