Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878210 | KEH25542.1 | 96.591 | 88 | 3 | 0 | 4 | 91 | 2 | 89 | 1.74e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878210 | A0A072U791 | 96.591 | 88 | 3 | 0 | 4 | 91 | 2 | 89 | 8.31e-55 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0535570 | Msa0878210 | 0.803798 | 2.934557e-49 | -8.615850e-47 |
| Msa0878210 | Msa0943960 | 0.971427 | 3.807359e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878210 | MtrunA17_Chr6g0460741 | 96.591 | 88 | 3 | 0 | 4 | 91 | 2 | 89 | 1.60e-58 | 174 |
| Msa0878210 | MtrunA17_Chr6g0460651 | 33.333 | 96 | 59 | 3 | 1 | 91 | 4 | 99 | 2.51e-13 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATTGTGTTTATCATTT+TGG | 0.111532 | 6_1:-18861887 | Msa0878210:CDS |
| AGGATTTGATTATGAGCTTA+AGG | 0.343702 | 6_1:-18860281 | Msa0878210:CDS |
| TTTGGGTCATGATGATGATT+TGG | 0.350274 | 6_1:+18860174 | None:intergenic |
| CAGATCAATATCCATCGTTT+TGG | 0.367728 | 6_1:+18861711 | None:intergenic |
| CAAAACGATGGATATTGATC+TGG | 0.375408 | 6_1:-18861710 | Msa0878210:CDS |
| TGATGATTTGGTCCTGTTCC+AGG | 0.376998 | 6_1:+18860186 | None:intergenic |
| TGATCAGCTCTTTGACTTGA+AGG | 0.379771 | 6_1:-18860253 | Msa0878210:CDS |
| CAAAGAAACTTACTTGTTGA+AGG | 0.401416 | 6_1:+18861835 | None:intergenic |
| CTTTCAGATTACCCTGGAAC+AGG | 0.451144 | 6_1:-18860198 | Msa0878210:CDS |
| AAAACGATGGATATTGATCT+GGG | 0.522392 | 6_1:-18861709 | Msa0878210:CDS |
| CATCATGACCCAAAATCCCC+TGG | 0.552704 | 6_1:-18860165 | Msa0878210:CDS |
| CTGTTCCAGGGTAATCTGAA+AGG | 0.585444 | 6_1:+18860199 | None:intergenic |
| GATGATTTGGTCCTGTTCCA+GGG | 0.588699 | 6_1:+18860187 | None:intergenic |
| TGAAAAGAGAAGAATGATGA+CGG | 0.602164 | 6_1:-18860223 | Msa0878210:CDS |
| AACGATGGATATTGATCTGG+GGG | 0.605257 | 6_1:-18861707 | Msa0878210:CDS |
| ACGGACCTTTCAGATTACCC+TGG | 0.624430 | 6_1:-18860204 | Msa0878210:CDS |
| AAACGATGGATATTGATCTG+GGG | 0.659701 | 6_1:-18861708 | Msa0878210:CDS |
| GAGCCTCATGACCAAAACGA+TGG | 0.676654 | 6_1:-18861722 | Msa0878210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATAAAATAA+AGG | + | chr6_1:18861129-18861148 | None:intergenic | 0.0% |
| !! | AATAAAATAAAATAAAATAA+AGG | + | chr6_1:18861129-18861148 | None:intergenic | 0.0% |
| !!! | ATTTGTTAGTTTTTTTTTTA+GGG | - | chr6_1:18861589-18861608 | Msa0878210:intron | 10.0% |
| !!! | GTATAATTTAAAATTTGATA+GGG | + | chr6_1:18861743-18861762 | None:intergenic | 10.0% |
| !!! | AGTATAATTTAAAATTTGAT+AGG | + | chr6_1:18861744-18861763 | None:intergenic | 10.0% |
| !!! | ATTTGTTAGTTTTTTTTTTA+GGG | - | chr6_1:18861589-18861608 | Msa0878210:intron | 10.0% |
| !!! | GTATAATTTAAAATTTGATA+GGG | + | chr6_1:18861743-18861762 | None:intergenic | 10.0% |
| !!! | AGTATAATTTAAAATTTGAT+AGG | + | chr6_1:18861744-18861763 | None:intergenic | 10.0% |
| !! | ATATATATTGCACAATTAAA+AGG | - | chr6_1:18860294-18860313 | Msa0878210:intron | 15.0% |
| !! | ATAAGATAAAAATAAGTTCA+AGG | - | chr6_1:18860867-18860886 | Msa0878210:intron | 15.0% |
| !! | TAAGATAAAAATAAGTTCAA+GGG | - | chr6_1:18860868-18860887 | Msa0878210:intron | 15.0% |
| !! | TAACTATTGATGAAAAATAA+AGG | - | chr6_1:18861052-18861071 | Msa0878210:intron | 15.0% |
| !!! | CTTAATTTTATGTAACAATT+TGG | - | chr6_1:18861102-18861121 | Msa0878210:intron | 15.0% |
| !! | TTGAAATGAAAAAAAGATAA+AGG | - | chr6_1:18861294-18861313 | Msa0878210:intron | 15.0% |
| !! | TTTACCTAAAATTAAGTTAA+AGG | - | chr6_1:18861325-18861344 | Msa0878210:intron | 15.0% |
| !!! | ATTTTATTTATTTTCCGAAA+TGG | - | chr6_1:18861535-18861554 | Msa0878210:intron | 15.0% |
| !!! | TTTTATTTATTTTCCGAAAT+GGG | - | chr6_1:18861536-18861555 | Msa0878210:intron | 15.0% |
| !!! | GTTGTTAGTTTTTTTTTTTT+TGG | - | chr6_1:18861558-18861577 | Msa0878210:intron | 15.0% |
| !!! | CATTTGTTAGTTTTTTTTTT+AGG | - | chr6_1:18861588-18861607 | Msa0878210:intron | 15.0% |
| !!! | TTTGTTAGTTTTTTTTTTAG+GGG | - | chr6_1:18861590-18861609 | Msa0878210:intron | 15.0% |
| !! | ATATATATTGCACAATTAAA+AGG | - | chr6_1:18860294-18860313 | Msa0878210:intron | 15.0% |
| !! | ATAAGATAAAAATAAGTTCA+AGG | - | chr6_1:18860867-18860886 | Msa0878210:intron | 15.0% |
| !! | TAAGATAAAAATAAGTTCAA+GGG | - | chr6_1:18860868-18860887 | Msa0878210:intron | 15.0% |
| !! | TAACTATTGATGAAAAATAA+AGG | - | chr6_1:18861052-18861071 | Msa0878210:intron | 15.0% |
| !!! | CTTAATTTTATGTAACAATT+TGG | - | chr6_1:18861102-18861121 | Msa0878210:intron | 15.0% |
| !! | TTGAAATGAAAAAAAGATAA+AGG | - | chr6_1:18861294-18861313 | Msa0878210:intron | 15.0% |
| !! | TTTACCTAAAATTAAGTTAA+AGG | - | chr6_1:18861325-18861344 | Msa0878210:intron | 15.0% |
| !!! | ATTTTATTTATTTTCCGAAA+TGG | - | chr6_1:18861535-18861554 | Msa0878210:intron | 15.0% |
| !!! | TTTTATTTATTTTCCGAAAT+GGG | - | chr6_1:18861536-18861555 | Msa0878210:intron | 15.0% |
| !!! | GTTGTTAGTTTTTTTTTTTT+TGG | - | chr6_1:18861558-18861577 | Msa0878210:intron | 15.0% |
| !!! | CATTTGTTAGTTTTTTTTTT+AGG | - | chr6_1:18861588-18861607 | Msa0878210:intron | 15.0% |
| !!! | TTTGTTAGTTTTTTTTTTAG+GGG | - | chr6_1:18861590-18861609 | Msa0878210:intron | 15.0% |
| !!! | AATGATAAACACAATTTTGA+TGG | + | chr6_1:18860174-18860193 | None:intergenic | 20.0% |
| !!! | CAAAATTGTGTTTATCATTT+TGG | - | chr6_1:18860175-18860194 | Msa0878210:CDS | 20.0% |
| !! | GGTGTATATATATATATTAG+AGG | + | chr6_1:18860409-18860428 | None:intergenic | 20.0% |
| !!! | TTTTATGCATACTCTTATTT+AGG | + | chr6_1:18860498-18860517 | None:intergenic | 20.0% |
| !! | TCATAAAAATTACACTTTCA+CGG | - | chr6_1:18860663-18860682 | Msa0878210:intron | 20.0% |
| !! | AAATAACAATGAACTAATCA+AGG | + | chr6_1:18860768-18860787 | None:intergenic | 20.0% |
| !! | AAGATAAAAATAAGTTCAAG+GGG | - | chr6_1:18860869-18860888 | Msa0878210:intron | 20.0% |
| !! | GTTACATAAAATTAAGCTAA+GGG | + | chr6_1:18861098-18861117 | None:intergenic | 20.0% |
| !! | TGTTACATAAAATTAAGCTA+AGG | + | chr6_1:18861099-18861118 | None:intergenic | 20.0% |
| !! | TCATATGTAAATTGATCAAA+AGG | - | chr6_1:18861265-18861284 | Msa0878210:intron | 20.0% |
| !!! | CTTAATTTTAGGTAAAAGTT+TGG | + | chr6_1:18861321-18861340 | None:intergenic | 20.0% |
| !!! | AAGTCCTTTAACTTAATTTT+AGG | + | chr6_1:18861332-18861351 | None:intergenic | 20.0% |
| !! | GTTTAAATTGTTTACCAAAA+TGG | - | chr6_1:18861461-18861480 | Msa0878210:intron | 20.0% |
| !!! | AATGATAAACACAATTTTGA+TGG | + | chr6_1:18860174-18860193 | None:intergenic | 20.0% |
| !!! | CAAAATTGTGTTTATCATTT+TGG | - | chr6_1:18860175-18860194 | Msa0878210:CDS | 20.0% |
| !! | GGTGTATATATATATATTAG+AGG | + | chr6_1:18860409-18860428 | None:intergenic | 20.0% |
| !!! | TTTTATGCATACTCTTATTT+AGG | + | chr6_1:18860498-18860517 | None:intergenic | 20.0% |
| !! | TCATAAAAATTACACTTTCA+CGG | - | chr6_1:18860663-18860682 | Msa0878210:intron | 20.0% |
| !! | AAATAACAATGAACTAATCA+AGG | + | chr6_1:18860768-18860787 | None:intergenic | 20.0% |
| !! | AAGATAAAAATAAGTTCAAG+GGG | - | chr6_1:18860869-18860888 | Msa0878210:intron | 20.0% |
| !! | GTTACATAAAATTAAGCTAA+GGG | + | chr6_1:18861098-18861117 | None:intergenic | 20.0% |
| !! | TGTTACATAAAATTAAGCTA+AGG | + | chr6_1:18861099-18861118 | None:intergenic | 20.0% |
| !! | TCATATGTAAATTGATCAAA+AGG | - | chr6_1:18861265-18861284 | Msa0878210:intron | 20.0% |
| !!! | CTTAATTTTAGGTAAAAGTT+TGG | + | chr6_1:18861321-18861340 | None:intergenic | 20.0% |
| !!! | AAGTCCTTTAACTTAATTTT+AGG | + | chr6_1:18861332-18861351 | None:intergenic | 20.0% |
| !! | GTTTAAATTGTTTACCAAAA+TGG | - | chr6_1:18861461-18861480 | Msa0878210:intron | 20.0% |
| !!! | TCTTTGCTTTTAACCTTTTT+AGG | - | chr6_1:18860244-18860263 | Msa0878210:CDS | 25.0% |
| !!! | CTTTGCTTTTAACCTTTTTA+GGG | - | chr6_1:18860245-18860264 | Msa0878210:CDS | 25.0% |
| ! | ACGCATTATGTGATTATATA+GGG | - | chr6_1:18860318-18860337 | Msa0878210:intron | 25.0% |
| !!! | TTTTTTTTTTTCCTCCCTAA+GGG | - | chr6_1:18860432-18860451 | Msa0878210:intron | 25.0% |
| ! | AAAATATCATAGCCATAAAC+TGG | - | chr6_1:18860622-18860641 | Msa0878210:intron | 25.0% |
| ! | AAAAATAACTAGCCAGTTTA+TGG | + | chr6_1:18860637-18860656 | None:intergenic | 25.0% |
| !!! | GATTAGTTCATTGTTATTTG+TGG | - | chr6_1:18860769-18860788 | Msa0878210:intron | 25.0% |
| ! | TACTTGTACTTCATCTATAT+GGG | + | chr6_1:18860906-18860925 | None:intergenic | 25.0% |
| ! | AGTAAGCAATTCAATTTAGA+TGG | - | chr6_1:18861014-18861033 | Msa0878210:intron | 25.0% |
| ! | TTTCATTTCAAATCTGTCTT+TGG | - | chr6_1:18861154-18861173 | Msa0878210:intron | 25.0% |
| ! | ATTATCAAGCTTCAAATTCA+TGG | + | chr6_1:18861245-18861264 | None:intergenic | 25.0% |
| ! | AAGGACTTGTCAAAAATTAA+TGG | - | chr6_1:18861344-18861363 | Msa0878210:intron | 25.0% |
| !! | AATTAATTGATGCACCATTT+TGG | + | chr6_1:18861478-18861497 | None:intergenic | 25.0% |
| ! | AAAAAACTAACAACCCATTT+CGG | + | chr6_1:18861552-18861571 | None:intergenic | 25.0% |
| ! | AAAATTTGATAGGGAATGTA+AGG | + | chr6_1:18861734-18861753 | None:intergenic | 25.0% |
| !!! | TCTTTGCTTTTAACCTTTTT+AGG | - | chr6_1:18860244-18860263 | Msa0878210:CDS | 25.0% |
| !!! | CTTTGCTTTTAACCTTTTTA+GGG | - | chr6_1:18860245-18860264 | Msa0878210:CDS | 25.0% |
| ! | ACGCATTATGTGATTATATA+GGG | - | chr6_1:18860318-18860337 | Msa0878210:intron | 25.0% |
| !!! | TTTTTTTTTTTCCTCCCTAA+GGG | - | chr6_1:18860432-18860451 | Msa0878210:intron | 25.0% |
| ! | AAAATATCATAGCCATAAAC+TGG | - | chr6_1:18860622-18860641 | Msa0878210:intron | 25.0% |
| ! | AAAAATAACTAGCCAGTTTA+TGG | + | chr6_1:18860637-18860656 | None:intergenic | 25.0% |
| !!! | GATTAGTTCATTGTTATTTG+TGG | - | chr6_1:18860769-18860788 | Msa0878210:intron | 25.0% |
| ! | TACTTGTACTTCATCTATAT+GGG | + | chr6_1:18860906-18860925 | None:intergenic | 25.0% |
| ! | AGTAAGCAATTCAATTTAGA+TGG | - | chr6_1:18861014-18861033 | Msa0878210:intron | 25.0% |
| ! | TTTCATTTCAAATCTGTCTT+TGG | - | chr6_1:18861154-18861173 | Msa0878210:intron | 25.0% |
| ! | ATTATCAAGCTTCAAATTCA+TGG | + | chr6_1:18861245-18861264 | None:intergenic | 25.0% |
| ! | AAGGACTTGTCAAAAATTAA+TGG | - | chr6_1:18861344-18861363 | Msa0878210:intron | 25.0% |
| !! | AATTAATTGATGCACCATTT+TGG | + | chr6_1:18861478-18861497 | None:intergenic | 25.0% |
| ! | AAAAAACTAACAACCCATTT+CGG | + | chr6_1:18861552-18861571 | None:intergenic | 25.0% |
| ! | AAAATTTGATAGGGAATGTA+AGG | + | chr6_1:18861734-18861753 | None:intergenic | 25.0% |
| !! | GATAAACACAATTTTGATGG+TGG | + | chr6_1:18860171-18860190 | None:intergenic | 30.0% |
| ! | CAAAGAAACTTACTTGTTGA+AGG | + | chr6_1:18860230-18860249 | None:intergenic | 30.0% |
| ! | AAAGCATCAAAACCCTAAAA+AGG | + | chr6_1:18860260-18860279 | None:intergenic | 30.0% |
| CACGCATTATGTGATTATAT+AGG | - | chr6_1:18860317-18860336 | Msa0878210:intron | 30.0% | |
| AAAACGATGGATATTGATCT+GGG | - | chr6_1:18860353-18860372 | Msa0878210:intron | 30.0% | |
| AGGGAGGAAAAAAAAAAAGA+TGG | + | chr6_1:18860430-18860449 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTTTTCCTCCCTA+AGG | - | chr6_1:18860431-18860450 | Msa0878210:intron | 30.0% |
| !!! | TTTTTTTTTTCCTCCCTAAG+GGG | - | chr6_1:18860433-18860452 | Msa0878210:intron | 30.0% |
| CAAAATATATGAACCCCTTA+GGG | + | chr6_1:18860449-18860468 | None:intergenic | 30.0% | |
| ACAAAATATATGAACCCCTT+AGG | + | chr6_1:18860450-18860469 | None:intergenic | 30.0% | |
| AGTATGCATAAAACCTCTAA+GGG | - | chr6_1:18860505-18860524 | Msa0878210:intron | 30.0% | |
| ! | TGTTATTTGTGGAATCCAAA+AGG | - | chr6_1:18860780-18860799 | Msa0878210:intron | 30.0% |
| CTACTTGTACTTCATCTATA+TGG | + | chr6_1:18860907-18860926 | None:intergenic | 30.0% | |
| ! | TATACTCTTGACTAATTTGC+AGG | - | chr6_1:18861758-18861777 | Msa0878210:intron | 30.0% |
| AGGATTTGATTATGAGCTTA+AGG | - | chr6_1:18861781-18861800 | Msa0878210:intron | 30.0% | |
| TGAAAAGAGAAGAATGATGA+CGG | - | chr6_1:18861839-18861858 | Msa0878210:intron | 30.0% | |
| !! | GATAAACACAATTTTGATGG+TGG | + | chr6_1:18860171-18860190 | None:intergenic | 30.0% |
| ! | CAAAGAAACTTACTTGTTGA+AGG | + | chr6_1:18860230-18860249 | None:intergenic | 30.0% |
| ! | AAAGCATCAAAACCCTAAAA+AGG | + | chr6_1:18860260-18860279 | None:intergenic | 30.0% |
| CACGCATTATGTGATTATAT+AGG | - | chr6_1:18860317-18860336 | Msa0878210:intron | 30.0% | |
| AAAACGATGGATATTGATCT+GGG | - | chr6_1:18860353-18860372 | Msa0878210:intron | 30.0% | |
| AGGGAGGAAAAAAAAAAAGA+TGG | + | chr6_1:18860430-18860449 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTTTTCCTCCCTA+AGG | - | chr6_1:18860431-18860450 | Msa0878210:intron | 30.0% |
| !!! | TTTTTTTTTTCCTCCCTAAG+GGG | - | chr6_1:18860433-18860452 | Msa0878210:intron | 30.0% |
| CAAAATATATGAACCCCTTA+GGG | + | chr6_1:18860449-18860468 | None:intergenic | 30.0% | |
| ACAAAATATATGAACCCCTT+AGG | + | chr6_1:18860450-18860469 | None:intergenic | 30.0% | |
| AGTATGCATAAAACCTCTAA+GGG | - | chr6_1:18860505-18860524 | Msa0878210:intron | 30.0% | |
| ! | TGTTATTTGTGGAATCCAAA+AGG | - | chr6_1:18860780-18860799 | Msa0878210:intron | 30.0% |
| CTACTTGTACTTCATCTATA+TGG | + | chr6_1:18860907-18860926 | None:intergenic | 30.0% | |
| ! | TATACTCTTGACTAATTTGC+AGG | - | chr6_1:18861758-18861777 | Msa0878210:intron | 30.0% |
| AGGATTTGATTATGAGCTTA+AGG | - | chr6_1:18861781-18861800 | Msa0878210:intron | 30.0% | |
| TGAAAAGAGAAGAATGATGA+CGG | - | chr6_1:18861839-18861858 | Msa0878210:intron | 30.0% | |
| ! | CAGATCAATATCCATCGTTT+TGG | + | chr6_1:18860354-18860373 | None:intergenic | 35.0% |
| CAAAACGATGGATATTGATC+TGG | - | chr6_1:18860352-18860371 | Msa0878210:intron | 35.0% | |
| AAACGATGGATATTGATCTG+GGG | - | chr6_1:18860354-18860373 | Msa0878210:intron | 35.0% | |
| GAGTATGCATAAAACCTCTA+AGG | - | chr6_1:18860504-18860523 | Msa0878210:intron | 35.0% | |
| AAATACATGCCTTGTAGCTA+GGG | + | chr6_1:18860544-18860563 | None:intergenic | 35.0% | |
| ! | ATCATGTGTCAGTAACCTTT+TGG | + | chr6_1:18860798-18860817 | None:intergenic | 35.0% |
| TAGGGAATGTAAGGATGATT+TGG | + | chr6_1:18861725-18861744 | None:intergenic | 35.0% | |
| ! | TTTGGGTCATGATGATGATT+TGG | + | chr6_1:18861891-18861910 | None:intergenic | 35.0% |
| ! | CAGATCAATATCCATCGTTT+TGG | + | chr6_1:18860354-18860373 | None:intergenic | 35.0% |
| CAAAACGATGGATATTGATC+TGG | - | chr6_1:18860352-18860371 | Msa0878210:intron | 35.0% | |
| AAACGATGGATATTGATCTG+GGG | - | chr6_1:18860354-18860373 | Msa0878210:intron | 35.0% | |
| GAGTATGCATAAAACCTCTA+AGG | - | chr6_1:18860504-18860523 | Msa0878210:intron | 35.0% | |
| AAATACATGCCTTGTAGCTA+GGG | + | chr6_1:18860544-18860563 | None:intergenic | 35.0% | |
| ! | ATCATGTGTCAGTAACCTTT+TGG | + | chr6_1:18860798-18860817 | None:intergenic | 35.0% |
| TAGGGAATGTAAGGATGATT+TGG | + | chr6_1:18861725-18861744 | None:intergenic | 35.0% | |
| ! | TTTGGGTCATGATGATGATT+TGG | + | chr6_1:18861891-18861910 | None:intergenic | 35.0% |
| !! | TATCCATCGTTTTGGTCATG+AGG | + | chr6_1:18860346-18860365 | None:intergenic | 40.0% |
| AACGATGGATATTGATCTGG+GGG | - | chr6_1:18860355-18860374 | Msa0878210:intron | 40.0% | |
| AATATATGAACCCCTTAGGG+AGG | + | chr6_1:18860446-18860465 | None:intergenic | 40.0% | |
| CAAATACATGCCTTGTAGCT+AGG | + | chr6_1:18860545-18860564 | None:intergenic | 40.0% | |
| CTAGCTACAAGGCATGTATT+TGG | - | chr6_1:18860543-18860562 | Msa0878210:intron | 40.0% | |
| ATGATGAGATCTGTGTGACT+CGG | - | chr6_1:18860722-18860741 | Msa0878210:intron | 40.0% | |
| ! | ACTCTTGACTAATTTGCAGG+AGG | - | chr6_1:18861761-18861780 | Msa0878210:intron | 40.0% |
| !! | TGATCAGCTCTTTGACTTGA+AGG | - | chr6_1:18861809-18861828 | Msa0878210:intron | 40.0% |
| ! | ATGCTTTTCCAGGGGATTTT+GGG | + | chr6_1:18861908-18861927 | None:intergenic | 40.0% |
| ! | TATGCTTTTCCAGGGGATTT+TGG | + | chr6_1:18861909-18861928 | None:intergenic | 40.0% |
| !! | TATCCATCGTTTTGGTCATG+AGG | + | chr6_1:18860346-18860365 | None:intergenic | 40.0% |
| AACGATGGATATTGATCTGG+GGG | - | chr6_1:18860355-18860374 | Msa0878210:intron | 40.0% | |
| AATATATGAACCCCTTAGGG+AGG | + | chr6_1:18860446-18860465 | None:intergenic | 40.0% | |
| CAAATACATGCCTTGTAGCT+AGG | + | chr6_1:18860545-18860564 | None:intergenic | 40.0% | |
| CTAGCTACAAGGCATGTATT+TGG | - | chr6_1:18860543-18860562 | Msa0878210:intron | 40.0% | |
| ATGATGAGATCTGTGTGACT+CGG | - | chr6_1:18860722-18860741 | Msa0878210:intron | 40.0% | |
| ! | ACTCTTGACTAATTTGCAGG+AGG | - | chr6_1:18861761-18861780 | Msa0878210:intron | 40.0% |
| !! | TGATCAGCTCTTTGACTTGA+AGG | - | chr6_1:18861809-18861828 | Msa0878210:intron | 40.0% |
| ! | ATGCTTTTCCAGGGGATTTT+GGG | + | chr6_1:18861908-18861927 | None:intergenic | 40.0% |
| ! | TATGCTTTTCCAGGGGATTT+TGG | + | chr6_1:18861909-18861928 | None:intergenic | 40.0% |
| CAGAATAAGCATGCCCTTAG+AGG | + | chr6_1:18860521-18860540 | None:intergenic | 45.0% | |
| CTTATTCTGCCCTAGCTACA+AGG | - | chr6_1:18860532-18860551 | Msa0878210:intron | 45.0% | |
| !! | TGTGTGACTCGGTTACTACT+TGG | - | chr6_1:18860733-18860752 | Msa0878210:intron | 45.0% |
| !! | GGATGATTTGGTGACTGAGA+TGG | + | chr6_1:18861713-18861732 | None:intergenic | 45.0% |
| CTGTTCCAGGGTAATCTGAA+AGG | + | chr6_1:18861866-18861885 | None:intergenic | 45.0% | |
| CTTTCAGATTACCCTGGAAC+AGG | - | chr6_1:18861864-18861883 | Msa0878210:CDS | 45.0% | |
| !! | GATGATTTGGTCCTGTTCCA+GGG | + | chr6_1:18861878-18861897 | None:intergenic | 45.0% |
| !! | TGATGATTTGGTCCTGTTCC+AGG | + | chr6_1:18861879-18861898 | None:intergenic | 45.0% |
| CAGAATAAGCATGCCCTTAG+AGG | + | chr6_1:18860521-18860540 | None:intergenic | 45.0% | |
| CTTATTCTGCCCTAGCTACA+AGG | - | chr6_1:18860532-18860551 | Msa0878210:intron | 45.0% | |
| !! | TGTGTGACTCGGTTACTACT+TGG | - | chr6_1:18860733-18860752 | Msa0878210:intron | 45.0% |
| !! | GGATGATTTGGTGACTGAGA+TGG | + | chr6_1:18861713-18861732 | None:intergenic | 45.0% |
| CTGTTCCAGGGTAATCTGAA+AGG | + | chr6_1:18861866-18861885 | None:intergenic | 45.0% | |
| CTTTCAGATTACCCTGGAAC+AGG | - | chr6_1:18861864-18861883 | Msa0878210:CDS | 45.0% | |
| !! | GATGATTTGGTCCTGTTCCA+GGG | + | chr6_1:18861878-18861897 | None:intergenic | 45.0% |
| !! | TGATGATTTGGTCCTGTTCC+AGG | + | chr6_1:18861879-18861898 | None:intergenic | 45.0% |
| GAGCCTCATGACCAAAACGA+TGG | - | chr6_1:18860340-18860359 | Msa0878210:intron | 50.0% | |
| GGATATTGATCTGGGGGCTA+AGG | - | chr6_1:18860361-18860380 | Msa0878210:intron | 50.0% | |
| ACGGACCTTTCAGATTACCC+TGG | - | chr6_1:18861858-18861877 | Msa0878210:CDS | 50.0% | |
| CATCATGACCCAAAATCCCC+TGG | - | chr6_1:18861897-18861916 | Msa0878210:CDS | 50.0% | |
| GAGCCTCATGACCAAAACGA+TGG | - | chr6_1:18860340-18860359 | Msa0878210:intron | 50.0% | |
| GGATATTGATCTGGGGGCTA+AGG | - | chr6_1:18860361-18860380 | Msa0878210:intron | 50.0% | |
| ACGGACCTTTCAGATTACCC+TGG | - | chr6_1:18861858-18861877 | Msa0878210:CDS | 50.0% | |
| CATCATGACCCAAAATCCCC+TGG | - | chr6_1:18861897-18861916 | Msa0878210:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 18860155 | 18861929 | 18860155 | ID=Msa0878210;Name=Msa0878210 |
| chr6_1 | mRNA | 18860155 | 18861929 | 18860155 | ID=Msa0878210-mRNA-1;Parent=Msa0878210;Name=Msa0878210-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0|1|1|1|3|0|91 |
| chr6_1 | exon | 18861848 | 18861929 | 18861848 | ID=Msa0878210-mRNA-1:exon:5087;Parent=Msa0878210-mRNA-1 |
| chr6_1 | exon | 18861702 | 18861745 | 18861702 | ID=Msa0878210-mRNA-1:exon:5086;Parent=Msa0878210-mRNA-1 |
| chr6_1 | exon | 18860155 | 18860304 | 18860155 | ID=Msa0878210-mRNA-1:exon:5085;Parent=Msa0878210-mRNA-1 |
| chr6_1 | CDS | 18861848 | 18861929 | 18861848 | ID=Msa0878210-mRNA-1:cds;Parent=Msa0878210-mRNA-1 |
| chr6_1 | CDS | 18861702 | 18861745 | 18861702 | ID=Msa0878210-mRNA-1:cds;Parent=Msa0878210-mRNA-1 |
| chr6_1 | CDS | 18860155 | 18860304 | 18860155 | ID=Msa0878210-mRNA-1:cds;Parent=Msa0878210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
