Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945390 | sp|Q96H78|S2544_HUMAN | 38.235 | 68 | 42 | 0 | 6 | 73 | 10 | 77 | 7.05e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945390 | A0A072U628 | 95.745 | 94 | 4 | 0 | 1 | 94 | 1 | 94 | 2.63e-55 | 183 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0874670 | Msa0945390 | 0.850489 | 1.643018e-60 | -8.615850e-47 |
| Msa0939790 | Msa0945390 | 0.806790 | 6.933021e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945390 | MtrunA17_Chr6g0455381 | 95.745 | 94 | 4 | 0 | 1 | 94 | 1 | 94 | 5.06e-59 | 183 |
| Msa0945390 | MtrunA17_Chr7g0219891 | 78.889 | 90 | 19 | 0 | 5 | 94 | 9 | 98 | 6.67e-45 | 147 |
| Msa0945390 | MtrunA17_Chr2g0293621 | 45.833 | 96 | 52 | 0 | 5 | 100 | 17 | 112 | 1.07e-27 | 102 |
| Msa0945390 | MtrunA17_Chr3g0136041 | 51.087 | 92 | 42 | 1 | 5 | 96 | 20 | 108 | 1.78e-26 | 99.8 |
| Msa0945390 | MtrunA17_Chr8g0343381 | 50.538 | 93 | 41 | 2 | 5 | 96 | 21 | 109 | 2.64e-25 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945390 | AT5G15640.1 | 77.778 | 90 | 20 | 0 | 5 | 94 | 16 | 105 | 1.20e-45 | 149 |
| Msa0945390 | AT5G15640.2 | 76.404 | 89 | 20 | 1 | 6 | 94 | 11 | 98 | 1.20e-41 | 139 |
| Msa0945390 | AT1G72820.1 | 50.000 | 92 | 43 | 1 | 5 | 96 | 19 | 107 | 4.41e-26 | 99.4 |
| Msa0945390 | AT1G72820.2 | 50.000 | 92 | 43 | 1 | 5 | 96 | 19 | 107 | 4.41e-26 | 99.4 |
| Msa0945390 | AT5G26200.1 | 44.792 | 96 | 50 | 1 | 5 | 100 | 27 | 119 | 8.92e-24 | 92.8 |
Find 106 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTTCCTATGATAATTA+AGG | 0.146445 | 6_3:-24152817 | None:intergenic |
| GAAACTCAATTTACATAGTT+TGG | 0.162384 | 6_3:+24147573 | None:intergenic |
| TACCTGTCCCAGTTGATTTC+GGG | 0.231208 | 6_3:+24152695 | None:intergenic |
| GGCATTCGTGGTTTGTATAA+AGG | 0.257870 | 6_3:-24151094 | Msa0945390:CDS |
| ACATCCAAGCCCCACTATAT+TGG | 0.272760 | 6_3:+24149900 | None:intergenic |
| GTAGTTTCAGATAGTTTAAA+TGG | 0.289394 | 6_3:+24150976 | None:intergenic |
| TTTGTGGGATGAGTTGATTT+TGG | 0.293978 | 6_3:-24147549 | Msa0945390:three_prime_UTR |
| ATACCTGTCCCAGTTGATTT+CGG | 0.301520 | 6_3:+24152694 | None:intergenic |
| TTAGACAATTATCTTGGATT+AGG | 0.301617 | 6_3:-24147338 | Msa0945390:three_prime_UTR |
| GAAGGTTTATATAGAGGATT+AGG | 0.309896 | 6_3:-24148245 | Msa0945390:three_prime_UTR |
| TAGTCTGCCAAAGATTGTTT+TGG | 0.312137 | 6_3:-24149013 | Msa0945390:three_prime_UTR |
| ACCCTTGCACCATCAACTTT+TGG | 0.312637 | 6_3:+24149936 | None:intergenic |
| ATGGGGTACTTCAATGATAT+TGG | 0.313800 | 6_3:-24148198 | Msa0945390:three_prime_UTR |
| AGGAGTACCTTTCTCAGATT+TGG | 0.314142 | 6_3:+24149035 | None:intergenic |
| GCCTGAACCAAAACAATCTT+TGG | 0.320437 | 6_3:+24149006 | None:intergenic |
| GCTCAAGTCAACGCTTCTTA+TGG | 0.333157 | 6_3:-24149771 | Msa0945390:three_prime_UTR |
| GCCACTTGTTGTGGTCTCTA+AGG | 0.336204 | 6_3:+24151018 | None:intergenic |
| AAACTCAATTTACATAGTTT+GGG | 0.343066 | 6_3:+24147574 | None:intergenic |
| TCAGATTAGCCAAAAGTTGA+TGG | 0.349779 | 6_3:-24149945 | Msa0945390:intron |
| CATCCAAGCCCCACTATATT+GGG | 0.354208 | 6_3:+24149901 | None:intergenic |
| TGGCTGCTCCCGAAATCAAC+TGG | 0.354331 | 6_3:-24152703 | Msa0945390:CDS |
| GCATTCGTGGTTTGTATAAA+GGG | 0.363110 | 6_3:-24151093 | Msa0945390:CDS |
| GATGTGGGATGAGTTGATTT+TGG | 0.365754 | 6_3:-24147527 | Msa0945390:three_prime_UTR |
| AATTAACCCATAACAATGTT+AGG | 0.366683 | 6_3:+24147304 | None:intergenic |
| TACAATCAAGACTCGGTTAC+AGG | 0.372914 | 6_3:-24148929 | Msa0945390:intron |
| TCAACTGATTAGCCAAGATA+TGG | 0.373942 | 6_3:-24147598 | Msa0945390:three_prime_UTR |
| TCTCTTCCTATGATAATTAA+GGG | 0.374145 | 6_3:-24152816 | None:intergenic |
| CATAGTTTGGGACCATATCT+TGG | 0.375572 | 6_3:+24147586 | None:intergenic |
| GCTGACATGCTGACAAATCT+TGG | 0.376196 | 6_3:+24148221 | None:intergenic |
| AATTATCGTACCACGTCAAT+TGG | 0.383684 | 6_3:+24150886 | None:intergenic |
| AAATCCAATGTTCAAGTTGT+AGG | 0.385322 | 6_3:+24147474 | None:intergenic |
| CGTGGTTTGTATAAAGGGTT+TGG | 0.386999 | 6_3:-24151088 | Msa0945390:CDS |
| CGGGGTTTATACCGAGGGTT+TGG | 0.388273 | 6_3:-24149846 | Msa0945390:three_prime_UTR |
| GGCAGTGAGAAATATGATTC+TGG | 0.390248 | 6_3:+24151039 | None:intergenic |
| TGATAAGGTCTGAGGGAATC+CGG | 0.392612 | 6_3:-24149866 | Msa0945390:three_prime_UTR |
| TGGGTTAATTATTGTACAAT+GGG | 0.393887 | 6_3:-24147291 | Msa0945390:three_prime_UTR |
| TGCTCCTACAACTTGAACAT+TGG | 0.400067 | 6_3:-24147478 | Msa0945390:three_prime_UTR |
| CGCTGTTTGTGGGCAAGTTA+CGG | 0.409994 | 6_3:-24149793 | Msa0945390:three_prime_UTR |
| TAAAACAAAATTCTATGTAG+TGG | 0.425595 | 6_3:-24151251 | Msa0945390:CDS |
| TCAGGAAATAATCATTGGAT+TGG | 0.432268 | 6_3:-24147411 | Msa0945390:three_prime_UTR |
| TGGTTGGAAGGTTTATATAG+AGG | 0.444614 | 6_3:-24148251 | Msa0945390:three_prime_UTR |
| GAAGCGTTTGGTCAGCAATC+TGG | 0.451010 | 6_3:-24147628 | Msa0945390:three_prime_UTR |
| TCACCATCTAGCGCTGTTTG+TGG | 0.457149 | 6_3:-24149804 | Msa0945390:three_prime_UTR |
| TGCCCACAAACAGCGCTAGA+TGG | 0.464638 | 6_3:+24149801 | None:intergenic |
| ATGGGTTAATTATTGTACAA+TGG | 0.465694 | 6_3:-24147292 | Msa0945390:three_prime_UTR |
| CTCAAGACAGATGGCATTCG+TGG | 0.467371 | 6_3:-24151106 | Msa0945390:CDS |
| CTAGTCTTCACAACAGAGAC+AGG | 0.467783 | 6_3:+24151190 | None:intergenic |
| ATGCCCAATATAGTGGGGCT+TGG | 0.468130 | 6_3:-24149904 | Msa0945390:three_prime_UTR |
| CACCATCTAGCGCTGTTTGT+GGG | 0.468263 | 6_3:-24149803 | Msa0945390:three_prime_UTR |
| ATGTTGCTCGTAAGTTGATA+AGG | 0.474358 | 6_3:-24149881 | Msa0945390:three_prime_UTR |
| GGCAGGAATTGCTCCGGTGA+CGG | 0.476552 | 6_3:+24151060 | None:intergenic |
| GATAAGGTCTGAGGGAATCC+GGG | 0.482161 | 6_3:-24149865 | Msa0945390:three_prime_UTR |
| AATTGATCAGTGAGGATGGT+TGG | 0.482357 | 6_3:-24148267 | Msa0945390:three_prime_UTR |
| AAATGGTTCAAGCATCTTGA+AGG | 0.482454 | 6_3:+24150993 | None:intergenic |
| AAATTCTATGTAGTGGGAGC+TGG | 0.484600 | 6_3:-24151244 | Msa0945390:CDS |
| CTCCCGAAATCAACTGGGAC+AGG | 0.489215 | 6_3:-24152697 | Msa0945390:intron |
| GATCAGTGAGGATGGTTGGA+AGG | 0.489935 | 6_3:-24148263 | Msa0945390:three_prime_UTR |
| TCAGGCCATGCCCAATATAG+TGG | 0.508347 | 6_3:-24149911 | Msa0945390:three_prime_UTR |
| GATTTGTCAGCATGTCAGCA+TGG | 0.509157 | 6_3:-24148217 | Msa0945390:three_prime_UTR |
| CTGTCTCTGTTGTGAAGACT+AGG | 0.510659 | 6_3:-24151189 | Msa0945390:CDS |
| TTGAAGGAAGCCACTTGTTG+TGG | 0.510699 | 6_3:+24151009 | None:intergenic |
| GCAAAAGATGAAGAAGCGTT+TGG | 0.511322 | 6_3:-24147640 | Msa0945390:three_prime_UTR |
| GGGTTTGGCACTGCCGTCAC+CGG | 0.512242 | 6_3:-24151073 | Msa0945390:CDS |
| AAAACAATCTTTGGCAGACT+AGG | 0.516654 | 6_3:+24149015 | None:intergenic |
| GTGATGGGACATGGAAAGAA+AGG | 0.519328 | 6_3:-24148313 | Msa0945390:three_prime_UTR |
| ATTTGTCAGCATGTCAGCAT+GGG | 0.524386 | 6_3:-24148216 | Msa0945390:three_prime_UTR |
| GGCTGCTCCCGAAATCAACT+GGG | 0.527795 | 6_3:-24152702 | Msa0945390:CDS |
| AGCCAAAAGTTGATGGTGCA+AGG | 0.530699 | 6_3:-24149938 | Msa0945390:three_prime_UTR |
| GCCATAGCGAATGGCATTGG+TGG | 0.530848 | 6_3:-24150946 | Msa0945390:three_prime_UTR |
| AAAACAAAATTCTATGTAGT+GGG | 0.534149 | 6_3:-24151250 | Msa0945390:CDS |
| TTGATGGTGCAAGGGTACTC+AGG | 0.535278 | 6_3:-24149929 | Msa0945390:three_prime_UTR |
| CGAGTCTTGATTGTATCCAA+TGG | 0.544870 | 6_3:+24148937 | None:intergenic |
| GCCACCAATGCCATTCGCTA+TGG | 0.548089 | 6_3:+24150945 | None:intergenic |
| GCACCACAGGTGATGGGACA+TGG | 0.548711 | 6_3:-24148322 | Msa0945390:intron |
| GCTGCCATAGCGAATGGCAT+TGG | 0.561150 | 6_3:-24150949 | Msa0945390:three_prime_UTR |
| GTGAGAAATATGATTCTGGC+AGG | 0.562074 | 6_3:+24151043 | None:intergenic |
| GCCTTAGAGACCACAACAAG+TGG | 0.562329 | 6_3:-24151019 | Msa0945390:CDS |
| TGTTGTGAAGACTAGGATGC+AGG | 0.567417 | 6_3:-24151182 | Msa0945390:CDS |
| CAGGCCATGCCCAATATAGT+GGG | 0.568857 | 6_3:-24149910 | Msa0945390:three_prime_UTR |
| TTGCTTGCACCACAGGTGAT+GGG | 0.584312 | 6_3:-24148328 | Msa0945390:intron |
| GATTCTGGCAGGAATTGCTC+CGG | 0.586094 | 6_3:+24151054 | None:intergenic |
| AAGCCCCACTATATTGGGCA+TGG | 0.587131 | 6_3:+24149906 | None:intergenic |
| ATCGTGCATTACAACTCCAT+TGG | 0.587880 | 6_3:-24148953 | Msa0945390:three_prime_UTR |
| GTTAATTATTGTACAATGGG+AGG | 0.588794 | 6_3:-24147288 | Msa0945390:three_prime_UTR |
| CAAGTCAACGCTTCTTATGG+AGG | 0.592490 | 6_3:-24149768 | Msa0945390:intron |
| GCCAAAAGTTGATGGTGCAA+GGG | 0.597627 | 6_3:-24149937 | Msa0945390:three_prime_UTR |
| AGTGCATTGTCTGTTGTGAA+AGG | 0.598153 | 6_3:-24151133 | Msa0945390:CDS |
| GATGACGCCAAATCTGAGAA+AGG | 0.599009 | 6_3:-24149042 | Msa0945390:three_prime_UTR |
| TCGTAAGTTGATAAGGTCTG+AGG | 0.600329 | 6_3:-24149874 | Msa0945390:three_prime_UTR |
| AAAGAATTGATCAGTGAGGA+TGG | 0.605272 | 6_3:-24148271 | Msa0945390:three_prime_UTR |
| CGTAAGTTGATAAGGTCTGA+GGG | 0.606397 | 6_3:-24149873 | Msa0945390:three_prime_UTR |
| AAAGGATTACTCAAGACAGA+TGG | 0.621271 | 6_3:-24151115 | Msa0945390:CDS |
| TAAACTATCTGAAACTACAC+AGG | 0.624945 | 6_3:-24150971 | Msa0945390:three_prime_UTR |
| ACACAGGCTGCCATAGCGAA+TGG | 0.640012 | 6_3:-24150955 | Msa0945390:three_prime_UTR |
| CATTGGATACAATCAAGACT+CGG | 0.643386 | 6_3:-24148936 | Msa0945390:three_prime_UTR |
| TGACAGATAAACCAAACCCT+CGG | 0.648443 | 6_3:+24149835 | None:intergenic |
| GAATCCGGGGTTTATACCGA+GGG | 0.650829 | 6_3:-24149851 | Msa0945390:three_prime_UTR |
| GGAATCCGGGGTTTATACCG+AGG | 0.654814 | 6_3:-24149852 | Msa0945390:three_prime_UTR |
| CAAACCCTCGGTATAAACCC+CGG | 0.665310 | 6_3:+24149847 | None:intergenic |
| TGTTAAAGAATTGATCAGTG+AGG | 0.667195 | 6_3:-24148275 | Msa0945390:three_prime_UTR |
| ATAAGGTCTGAGGGAATCCG+GGG | 0.674374 | 6_3:-24149864 | Msa0945390:three_prime_UTR |
| TTTGTCAGCATGTCAGCATG+GGG | 0.695351 | 6_3:-24148215 | Msa0945390:three_prime_UTR |
| AGGCCATGCCCAATATAGTG+GGG | 0.706500 | 6_3:-24149909 | Msa0945390:three_prime_UTR |
| TGTGTTTGTTCCAATTGACG+TGG | 0.709166 | 6_3:-24150896 | Msa0945390:intron |
| TAGTCTTCACAACAGAGACA+GGG | 0.714360 | 6_3:+24151191 | None:intergenic |
| GGTTGCTTCAAACCATACTG+CGG | 0.743023 | 6_3:-24151161 | Msa0945390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAACTATTTGATAA+TGG | - | chr6_3:24147604-24147623 | Msa0945390:three_prime_UTR | 10.0% |
| !!! | TCTACTTTTTTTTTTTTTTT+TGG | + | chr6_3:24147870-24147889 | None:intergenic | 10.0% |
| !! | TATAAGAATACAATAAAAAA+GGG | + | chr6_3:24148624-24148643 | None:intergenic | 10.0% |
| !! | ATATAAGAATACAATAAAAA+AGG | + | chr6_3:24148625-24148644 | None:intergenic | 10.0% |
| !! | GAAAGTTAAAAAAAAAAAAT+TGG | - | chr6_3:24149212-24149231 | Msa0945390:intron | 10.0% |
| !!! | CTTTTTAAAAAAAGAATATT+TGG | - | chr6_3:24149879-24149898 | Msa0945390:three_prime_UTR | 10.0% |
| !!! | ATATTTTACTAATAATGATT+TGG | - | chr6_3:24151170-24151189 | Msa0945390:CDS | 10.0% |
| !!! | ATTTGATAATGGTTATTATA+AGG | - | chr6_3:24147615-24147634 | Msa0945390:three_prime_UTR | 15.0% |
| !!! | ATTTTACTATTTTGAGAATA+TGG | - | chr6_3:24147969-24147988 | Msa0945390:intron | 15.0% |
| !! | AAGAATACATAAAAAAAGAA+GGG | + | chr6_3:24148413-24148432 | None:intergenic | 15.0% |
| !! | TAAGAATACATAAAAAAAGA+AGG | + | chr6_3:24148414-24148433 | None:intergenic | 15.0% |
| !! | AATATGACATTAAATTCATA+TGG | + | chr6_3:24149988-24150007 | None:intergenic | 15.0% |
| !! | AATGAATAAGTATTCAATTT+AGG | - | chr6_3:24150320-24150339 | Msa0945390:intron | 15.0% |
| !! | AAAGAAAAAAAAACTAATCT+CGG | + | chr6_3:24150850-24150869 | None:intergenic | 15.0% |
| !!! | GAAAATAATATTTTTCCAAT+AGG | + | chr6_3:24152685-24152704 | None:intergenic | 15.0% |
| !!! | ATTTTTTTAGACAATTATCT+TGG | - | chr6_3:24152705-24152724 | Msa0945390:CDS | 15.0% |
| !! | ATTAAAAATGTAGTGATTAG+TGG | - | chr6_3:24147581-24147600 | Msa0945390:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTGGTAGATAGAT+TGG | + | chr6_3:24147858-24147877 | None:intergenic | 20.0% |
| !!! | GTTGTTAAAACATTGATTTT+GGG | - | chr6_3:24148214-24148233 | Msa0945390:three_prime_UTR | 20.0% |
| !! | TTATATGTTCAAATAATCTG+TGG | - | chr6_3:24148639-24148658 | Msa0945390:intron | 20.0% |
| !! | TAAAACAAAATTCTATGTAG+TGG | - | chr6_3:24148798-24148817 | Msa0945390:intron | 20.0% |
| !! | AAAACAAAATTCTATGTAGT+GGG | - | chr6_3:24148799-24148818 | Msa0945390:intron | 20.0% |
| !! | TAACTTTCTGTGTATAATAA+AGG | + | chr6_3:24149200-24149219 | None:intergenic | 20.0% |
| !! | AGTTGGGAATATAATTAAAA+TGG | - | chr6_3:24149497-24149516 | Msa0945390:intron | 20.0% |
| !! | AAGGAAATAAGAAATTTACT+TGG | + | chr6_3:24149758-24149777 | None:intergenic | 20.0% |
| !! | TTGATGAAAGTTATAACATT+TGG | + | chr6_3:24150045-24150064 | None:intergenic | 20.0% |
| !! | TGATATAATACAGAAACTAA+AGG | + | chr6_3:24150366-24150385 | None:intergenic | 20.0% |
| !!! | CAAAATCTGTATTTGATTTT+AGG | + | chr6_3:24150671-24150690 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAACTAATCTC+GGG | + | chr6_3:24150849-24150868 | None:intergenic | 20.0% |
| !! | TATGCATACTATCAATATTA+AGG | - | chr6_3:24150947-24150966 | Msa0945390:three_prime_UTR | 20.0% |
| !! | AATTAAGAATGACAACTAAA+TGG | - | chr6_3:24151576-24151595 | Msa0945390:intron | 20.0% |
| !! | GATAAATGATAGTATTATAC+AGG | + | chr6_3:24152324-24152343 | None:intergenic | 20.0% |
| !! | AAACTCAATTTACATAGTTT+GGG | + | chr6_3:24152478-24152497 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGGAAATAATCAT+TGG | - | chr6_3:24152633-24152652 | Msa0945390:intron | 20.0% |
| !!! | AGATATGAAATTTTTCCTAT+TGG | - | chr6_3:24152667-24152686 | Msa0945390:intron | 20.0% |
| ! | TGAATGATGAAGAATGAAAT+CGG | + | chr6_3:24147404-24147423 | None:intergenic | 25.0% |
| !!! | ATTTGTTGACTCATTTTTAC+TGG | - | chr6_3:24147558-24147577 | Msa0945390:three_prime_UTR | 25.0% |
| !!! | TGATAATGGTTATTATAAGG+TGG | - | chr6_3:24147618-24147637 | Msa0945390:three_prime_UTR | 25.0% |
| ! | CAAGATTTATTCAAGATTCT+AGG | - | chr6_3:24147902-24147921 | Msa0945390:intron | 25.0% |
| !!! | GAGAATATGGTTTTAAATTG+TGG | - | chr6_3:24147982-24148001 | Msa0945390:intron | 25.0% |
| !!! | GGTTGTTAAAACATTGATTT+TGG | - | chr6_3:24148213-24148232 | Msa0945390:three_prime_UTR | 25.0% |
| ! | TATAAAGCAGAAAAAATCAC+AGG | + | chr6_3:24148291-24148310 | None:intergenic | 25.0% |
| !!! | GTGATTTTTTCTGCTTTATA+AGG | - | chr6_3:24148291-24148310 | Msa0945390:three_prime_UTR | 25.0% |
| ! | AGGATGTAATTGTAATGTAA+CGG | - | chr6_3:24148311-24148330 | Msa0945390:three_prime_UTR | 25.0% |
| ! | AATACATAAAAAAAGAAGGG+AGG | + | chr6_3:24148410-24148429 | None:intergenic | 25.0% |
| ! | ATACAATAAAAAAGGGAAGT+GGG | + | chr6_3:24148617-24148636 | None:intergenic | 25.0% |
| ! | AATACAATAAAAAAGGGAAG+TGG | + | chr6_3:24148618-24148637 | None:intergenic | 25.0% |
| ! | GTAGTTTCAGATAGTTTAAA+TGG | + | chr6_3:24149076-24149095 | None:intergenic | 25.0% |
| ! | AAAAAAATTGGACTCATTGA+TGG | - | chr6_3:24149224-24149243 | Msa0945390:intron | 25.0% |
| ! | AGTACACTTTAATACATATG+TGG | - | chr6_3:24149280-24149299 | Msa0945390:intron | 25.0% |
| ! | GTACACTTTAATACATATGT+GGG | - | chr6_3:24149281-24149300 | Msa0945390:intron | 25.0% |
| ! | TTTCTAACTATGTCAGATAT+TGG | - | chr6_3:24149323-24149342 | Msa0945390:intron | 25.0% |
| !! | TGGAATTTGAAATACATTCA+CGG | - | chr6_3:24149343-24149362 | Msa0945390:intron | 25.0% |
| !!! | GTTTACTTTTGAACACTATT+TGG | - | chr6_3:24149422-24149441 | Msa0945390:intron | 25.0% |
| ! | TAGAGCTTGAATCAAAATAA+GGG | + | chr6_3:24149450-24149469 | None:intergenic | 25.0% |
| !! | TAAAATGGTATGTTTAGTTC+TGG | - | chr6_3:24149512-24149531 | Msa0945390:intron | 25.0% |
| !! | TTCAAATTTTCAGATGCATA+AGG | + | chr6_3:24149542-24149561 | None:intergenic | 25.0% |
| ! | TTATGCATCTGAAAATTTGA+AGG | - | chr6_3:24149541-24149560 | Msa0945390:intron | 25.0% |
| !!! | TTTTAACTAGCAAGTGTATT+CGG | - | chr6_3:24149622-24149641 | Msa0945390:intron | 25.0% |
| ! | TGTATTATCACTCTTAAAGA+AGG | + | chr6_3:24149665-24149684 | None:intergenic | 25.0% |
| ! | TTTCTCAATCAGAATATCAA+CGG | + | chr6_3:24149798-24149817 | None:intergenic | 25.0% |
| ! | TAATAGCTAATCCAAACAAT+CGG | - | chr6_3:24149908-24149927 | Msa0945390:three_prime_UTR | 25.0% |
| ! | CTGAAAATCATTCAATGTAA+GGG | + | chr6_3:24150088-24150107 | None:intergenic | 25.0% |
| ! | TCTGAAAATCATTCAATGTA+AGG | + | chr6_3:24150089-24150108 | None:intergenic | 25.0% |
| ! | AATACAGAAACTAAAGGAAA+AGG | + | chr6_3:24150360-24150379 | None:intergenic | 25.0% |
| !!! | GCTACTGAAATTTTATTTCT+CGG | + | chr6_3:24150922-24150941 | None:intergenic | 25.0% |
| ! | TATTAAGGAGAATATTTCAC+TGG | - | chr6_3:24150962-24150981 | Msa0945390:three_prime_UTR | 25.0% |
| ! | AATATAACAAACAACCAACA+AGG | + | chr6_3:24151155-24151174 | None:intergenic | 25.0% |
| ! | ACAGTCACTAAATTTATACT+GGG | + | chr6_3:24151532-24151551 | None:intergenic | 25.0% |
| ! | TACAGTCACTAAATTTATAC+TGG | + | chr6_3:24151533-24151552 | None:intergenic | 25.0% |
| ! | GAGCTAAAGTAAATACAATT+GGG | + | chr6_3:24151670-24151689 | None:intergenic | 25.0% |
| ! | CAATTGAGTCAGAAAAAATT+AGG | + | chr6_3:24151704-24151723 | None:intergenic | 25.0% |
| ! | ATTCAATTAAAACTCATGTC+TGG | - | chr6_3:24152013-24152032 | Msa0945390:intron | 25.0% |
| !! | TTTTGTCTGTATGAAGATAT+TGG | - | chr6_3:24152267-24152286 | Msa0945390:intron | 25.0% |
| ! | GAAACTCAATTTACATAGTT+TGG | + | chr6_3:24152479-24152498 | None:intergenic | 25.0% |
| !! | TGTAAATTGAGTTTCTTTTG+TGG | - | chr6_3:24152484-24152503 | Msa0945390:intron | 25.0% |
| !! | GTAAATTGAGTTTCTTTTGT+GGG | - | chr6_3:24152485-24152504 | Msa0945390:intron | 25.0% |
| ! | TTAGACAATTATCTTGGATT+AGG | - | chr6_3:24152711-24152730 | Msa0945390:exon | 25.0% |
| !! | TTCTTTTCCTAACATTGTTA+TGG | - | chr6_3:24152738-24152757 | Msa0945390:five_prime_UTR | 25.0% |
| !! | TCTTTTCCTAACATTGTTAT+GGG | - | chr6_3:24152739-24152758 | Msa0945390:five_prime_UTR | 25.0% |
| ! | AATTAACCCATAACAATGTT+AGG | + | chr6_3:24152748-24152767 | None:intergenic | 25.0% |
| !! | ATGGGTTAATTATTGTACAA+TGG | - | chr6_3:24152757-24152776 | Msa0945390:five_prime_UTR | 25.0% |
| ! | TGGGTTAATTATTGTACAAT+GGG | - | chr6_3:24152758-24152777 | Msa0945390:five_prime_UTR | 25.0% |
| ATGAAATCGGAAATGAAGAA+AGG | + | chr6_3:24147391-24147410 | None:intergenic | 30.0% | |
| ATAAACTCACAAACACAAAG+TGG | + | chr6_3:24147809-24147828 | None:intergenic | 30.0% | |
| TTGTGTTTGTGAGTTTATGA+TGG | - | chr6_3:24147811-24147830 | Msa0945390:intron | 30.0% | |
| TATCTCTGTAACCGTAATTA+CGG | - | chr6_3:24148005-24148024 | Msa0945390:intron | 30.0% | |
| TTCAATTGGTTGAAGTTGAA+CGG | - | chr6_3:24148083-24148102 | Msa0945390:intron | 30.0% | |
| !! | ATTGATTTTGGGTAAGTATG+TGG | - | chr6_3:24148225-24148244 | Msa0945390:three_prime_UTR | 30.0% |
| TTATATGTTCAAATCATCCG+TGG | - | chr6_3:24148431-24148450 | Msa0945390:intron | 30.0% | |
| TACAATAAAAAAGGGAAGTG+GGG | + | chr6_3:24148616-24148635 | None:intergenic | 30.0% | |
| ATGTTCAAATAATCTGTGGA+AGG | - | chr6_3:24148643-24148662 | Msa0945390:intron | 30.0% | |
| AGCGCTATAAAAAATGTTGA+TGG | + | chr6_3:24148708-24148727 | None:intergenic | 30.0% | |
| ACGTGAACATAATAAGGATA+AGG | + | chr6_3:24148757-24148776 | None:intergenic | 30.0% | |
| ACATACACGTGAACATAATA+AGG | + | chr6_3:24148763-24148782 | None:intergenic | 30.0% | |
| ! | TAAACTATCTGAAACTACAC+AGG | - | chr6_3:24149078-24149097 | Msa0945390:intron | 30.0% |
| CTAGAGCTTGAATCAAAATA+AGG | + | chr6_3:24149451-24149470 | None:intergenic | 30.0% | |
| !! | TTTTGATTCAAGCTCTAGTT+TGG | - | chr6_3:24149453-24149472 | Msa0945390:intron | 30.0% |
| ! | TTATCCTTCTGTTTGATAGT+TGG | - | chr6_3:24149480-24149499 | Msa0945390:intron | 30.0% |
| ! | TATCCTTCTGTTTGATAGTT+GGG | - | chr6_3:24149481-24149500 | Msa0945390:intron | 30.0% |
| GTGATTTATTTGCAGACATA+AGG | - | chr6_3:24149589-24149608 | Msa0945390:intron | 30.0% | |
| ATTTATTTGCAGACATAAGG+TGG | - | chr6_3:24149592-24149611 | Msa0945390:intron | 30.0% | |
| TTCTCAATCAGAATATCAAC+GGG | + | chr6_3:24149797-24149816 | None:intergenic | 30.0% | |
| !! | GTTTGGATTAGCTATTATGA+AGG | + | chr6_3:24149905-24149924 | None:intergenic | 30.0% |
| ATAAGTAGAAGATGAGAGAA+GGG | + | chr6_3:24150022-24150041 | None:intergenic | 30.0% | |
| GTATTATTGATGAACCTAAC+TGG | + | chr6_3:24150554-24150573 | None:intergenic | 30.0% | |
| ATCAGATATATGAGCTACTT+TGG | + | chr6_3:24150617-24150636 | None:intergenic | 30.0% | |
| AAGTGTAATTCAATCCTTTG+AGG | + | chr6_3:24150732-24150751 | None:intergenic | 30.0% | |
| CTTGCTTGAAATACATGAAT+TGG | - | chr6_3:24150749-24150768 | Msa0945390:intron | 30.0% | |
| !! | ATTTGGTTCAAGCTTTTGAT+AGG | + | chr6_3:24150823-24150842 | None:intergenic | 30.0% |
| AAACTAATCTCGGGTAAATT+TGG | + | chr6_3:24150840-24150859 | None:intergenic | 30.0% | |
| TGTTAAAATGACAACTGCAA+TGG | - | chr6_3:24151193-24151212 | Msa0945390:CDS | 30.0% | |
| CAGTCACTAAATTTATACTG+GGG | + | chr6_3:24151531-24151550 | None:intergenic | 30.0% | |
| CGAGCTAAAGTAAATACAAT+TGG | + | chr6_3:24151671-24151690 | None:intergenic | 30.0% | |
| AGTCAGAAAAAATTAGGAGT+CGG | + | chr6_3:24151698-24151717 | None:intergenic | 30.0% | |
| TGTTAAAGAATTGATCAGTG+AGG | - | chr6_3:24151774-24151793 | Msa0945390:intron | 30.0% | |
| GAAGGTTTATATAGAGGATT+AGG | - | chr6_3:24151804-24151823 | Msa0945390:intron | 30.0% | |
| ! | AGTTCAAATAATCATCGACT+TGG | - | chr6_3:24152073-24152092 | Msa0945390:intron | 30.0% |
| TATCTCAGAAACACAAAACT+GGG | + | chr6_3:24152127-24152146 | None:intergenic | 30.0% | |
| ATATCTCAGAAACACAAAAC+TGG | + | chr6_3:24152128-24152147 | None:intergenic | 30.0% | |
| AAATTATATGCATGCCAGAT+AGG | - | chr6_3:24152172-24152191 | Msa0945390:intron | 30.0% | |
| TGGCAGATTATCTGAATATA+AGG | + | chr6_3:24152208-24152227 | None:intergenic | 30.0% | |
| ATATTGGCAGTAAACAAATC+AGG | - | chr6_3:24152283-24152302 | Msa0945390:intron | 30.0% | |
| !!! | GATGAGTTGATTTTGGATAA+TGG | - | chr6_3:24152529-24152548 | Msa0945390:intron | 30.0% |
| !! | AAATCCAATGTTCAAGTTGT+AGG | + | chr6_3:24152578-24152597 | None:intergenic | 30.0% |
| !! | GCTATTCTAACTGATTTTTC+AGG | - | chr6_3:24152620-24152639 | Msa0945390:intron | 30.0% |
| TCAGGAAATAATCATTGGAT+TGG | - | chr6_3:24152638-24152657 | Msa0945390:intron | 30.0% | |
| GTTAATTATTGTACAATGGG+AGG | - | chr6_3:24152761-24152780 | Msa0945390:five_prime_UTR | 30.0% | |
| AACAATTTCGGCATATTTGC+CGG | + | chr6_3:24147747-24147766 | None:intergenic | 35.0% | |
| GCAAATATGCCGAAATTGTT+AGG | - | chr6_3:24147747-24147766 | Msa0945390:intron | 35.0% | |
| ATATGCCGAAATTGTTAGGT+CGG | - | chr6_3:24147751-24147770 | Msa0945390:intron | 35.0% | |
| AGATTGGTAGATAGATGAGA+TGG | + | chr6_3:24147842-24147861 | None:intergenic | 35.0% | |
| ! | ACAATTTTCCGCCGTAATTA+CGG | + | chr6_3:24148019-24148038 | None:intergenic | 35.0% |
| !!! | GTTTTAAAAATCGAGCCGAA+TGG | - | chr6_3:24148055-24148074 | Msa0945390:intron | 35.0% |
| AACCAAACCGTATATAGTGA+CGG | + | chr6_3:24148113-24148132 | None:intergenic | 35.0% | |
| !! | TATATACGGTTTGGTTATCG+TGG | - | chr6_3:24148117-24148136 | Msa0945390:intron | 35.0% |
| GCGCATATTTATTGCAATTG+TGG | - | chr6_3:24148250-24148269 | Msa0945390:three_prime_UTR | 35.0% | |
| GGGTTGAAAACAAATTGCAT+TGG | - | chr6_3:24148678-24148697 | Msa0945390:intron | 35.0% | |
| ! | TTCACGTGTATGTTTTCTGT+AGG | - | chr6_3:24148770-24148789 | Msa0945390:intron | 35.0% |
| AAAGGATTACTCAAGACAGA+TGG | - | chr6_3:24148934-24148953 | Msa0945390:three_prime_UTR | 35.0% | |
| ! | GCATTCGTGGTTTGTATAAA+GGG | - | chr6_3:24148956-24148975 | Msa0945390:three_prime_UTR | 35.0% |
| AAATGGTTCAAGCATCTTGA+AGG | + | chr6_3:24149059-24149078 | None:intergenic | 35.0% | |
| AATTATCGTACCACGTCAAT+TGG | + | chr6_3:24149166-24149185 | None:intergenic | 35.0% | |
| ATTCCCAACTATCAAACAGA+AGG | + | chr6_3:24149487-24149506 | None:intergenic | 35.0% | |
| GGGCATAAATGAACATCATA+AGG | + | chr6_3:24149777-24149796 | None:intergenic | 35.0% | |
| AGACTTGTAATCCGATTGTT+TGG | + | chr6_3:24149922-24149941 | None:intergenic | 35.0% | |
| GATAAGTAGAAGATGAGAGA+AGG | + | chr6_3:24150023-24150042 | None:intergenic | 35.0% | |
| ! | TCAGATTAGCCAAAAGTTGA+TGG | - | chr6_3:24150104-24150123 | Msa0945390:intron | 35.0% |
| !! | ATGTTGCTCGTAAGTTGATA+AGG | - | chr6_3:24150168-24150187 | Msa0945390:intron | 35.0% |
| ATTCCGTCTATTAAACTGCT+AGG | - | chr6_3:24150421-24150440 | Msa0945390:intron | 35.0% | |
| CAAATGGCATAATAACCTAC+CGG | + | chr6_3:24150447-24150466 | None:intergenic | 35.0% | |
| TCTGATTTCGTTGTATTCCA+AGG | - | chr6_3:24150631-24150650 | Msa0945390:intron | 35.0% | |
| GAATAACCCATTACATGATC+TGG | + | chr6_3:24150707-24150726 | None:intergenic | 35.0% | |
| ! | GAATATTTCACTGGTTGCTT+TGG | - | chr6_3:24150971-24150990 | Msa0945390:three_prime_UTR | 35.0% |
| AAAACAATCTTTGGCAGACT+AGG | + | chr6_3:24151037-24151056 | None:intergenic | 35.0% | |
| ! | TAGTCTGCCAAAGATTGTTT+TGG | - | chr6_3:24151036-24151055 | Msa0945390:CDS | 35.0% |
| CATTGGATACAATCAAGACT+CGG | - | chr6_3:24151113-24151132 | Msa0945390:CDS | 35.0% | |
| ACAGGTATTCATAACCTTGT+TGG | - | chr6_3:24151138-24151157 | Msa0945390:CDS | 35.0% | |
| GAAGAAAACAGTTGTCTACA+GGG | + | chr6_3:24151281-24151300 | None:intergenic | 35.0% | |
| AGAAGAAAACAGTTGTCTAC+AGG | + | chr6_3:24151282-24151301 | None:intergenic | 35.0% | |
| AAAGAATTGATCAGTGAGGA+TGG | - | chr6_3:24151778-24151797 | Msa0945390:intron | 35.0% | |
| TGGTTGGAAGGTTTATATAG+AGG | - | chr6_3:24151798-24151817 | Msa0945390:intron | 35.0% | |
| ! | ATGGGGTACTTCAATGATAT+TGG | - | chr6_3:24151851-24151870 | Msa0945390:intron | 35.0% |
| ! | TCAACTGATTAGCCAAGATA+TGG | - | chr6_3:24152451-24152470 | Msa0945390:intron | 35.0% |
| !!! | TTTGTGGGATGAGTTGATTT+TGG | - | chr6_3:24152500-24152519 | Msa0945390:intron | 35.0% |
| !!! | GATGAGTTGATTTTGGATGT+GGG | - | chr6_3:24152507-24152526 | Msa0945390:intron | 35.0% |
| !!! | CTCAACACTCGCTTTTTCAA+TGG | - | chr6_3:24147326-24147345 | Msa0945390:three_prime_UTR | 40.0% |
| ! | ATACCTGTCCCAGTTGATTT+CGG | + | chr6_3:24147358-24147377 | None:intergenic | 40.0% |
| CTCATAAGTCCTAGCTTAAC+CGG | - | chr6_3:24147725-24147744 | Msa0945390:intron | 40.0% | |
| TATGCCGAAATTGTTAGGTC+GGG | - | chr6_3:24147752-24147771 | Msa0945390:intron | 40.0% | |
| !! | AAACACAAAGTGGAGGTATC+GGG | + | chr6_3:24147799-24147818 | None:intergenic | 40.0% |
| ! | CAAACACAAAGTGGAGGTAT+CGG | + | chr6_3:24147800-24147819 | None:intergenic | 40.0% |
| AACTCACAAACACAAAGTGG+AGG | + | chr6_3:24147806-24147825 | None:intergenic | 40.0% | |
| TAAAAATCGAGCCGAATGGT+AGG | - | chr6_3:24148059-24148078 | Msa0945390:intron | 40.0% | |
| AAAAATCGAGCCGAATGGTA+GGG | - | chr6_3:24148060-24148079 | Msa0945390:intron | 40.0% | |
| ACCAATTGAACCCTACCATT+CGG | + | chr6_3:24148073-24148092 | None:intergenic | 40.0% | |
| AACCGTCACTATATACGGTT+TGG | - | chr6_3:24148108-24148127 | Msa0945390:intron | 40.0% | |
| !! | CGCTGGATTGATGTTTTGTT+CGG | - | chr6_3:24148192-24148211 | Msa0945390:three_prime_UTR | 40.0% |
| ! | AAATTCTATGTAGTGGGAGC+TGG | - | chr6_3:24148805-24148824 | Msa0945390:intron | 40.0% |
| !!! | ACTCTTTTCGAGTGTTACTG+TGG | - | chr6_3:24148828-24148847 | Msa0945390:intron | 40.0% |
| TAGTCTTCACAACAGAGACA+GGG | + | chr6_3:24148861-24148880 | None:intergenic | 40.0% | |
| AGTGCATTGTCTGTTGTGAA+AGG | - | chr6_3:24148916-24148935 | Msa0945390:intron | 40.0% | |
| ! | GGCATTCGTGGTTTGTATAA+AGG | - | chr6_3:24148955-24148974 | Msa0945390:three_prime_UTR | 40.0% |
| ! | CGTGGTTTGTATAAAGGGTT+TGG | - | chr6_3:24148961-24148980 | Msa0945390:three_prime_UTR | 40.0% |
| GTGAGAAATATGATTCTGGC+AGG | + | chr6_3:24149009-24149028 | None:intergenic | 40.0% | |
| GGCAGTGAGAAATATGATTC+TGG | + | chr6_3:24149013-24149032 | None:intergenic | 40.0% | |
| TGTGTTTGTTCCAATTGACG+TGG | - | chr6_3:24149153-24149172 | Msa0945390:intron | 40.0% | |
| !! | TCGTAAGTTGATAAGGTCTG+AGG | - | chr6_3:24150175-24150194 | Msa0945390:intron | 40.0% |
| !! | CGTAAGTTGATAAGGTCTGA+GGG | - | chr6_3:24150176-24150195 | Msa0945390:intron | 40.0% |
| TGACAGATAAACCAAACCCT+CGG | + | chr6_3:24150217-24150236 | None:intergenic | 40.0% | |
| CAACACACACATGCAACAAA+TGG | + | chr6_3:24150463-24150482 | None:intergenic | 40.0% | |
| !! | TCTGATTTGTGGTGCTACAT+AGG | + | chr6_3:24150487-24150506 | None:intergenic | 40.0% |
| AGCACCACAAATCAGATTGT+AGG | - | chr6_3:24150491-24150510 | Msa0945390:intron | 40.0% | |
| ! | CATGCCTACAATCTGATTTG+TGG | + | chr6_3:24150498-24150517 | None:intergenic | 40.0% |
| AATCAGATTGTAGGCATGTC+TGG | - | chr6_3:24150500-24150519 | Msa0945390:intron | 40.0% | |
| TTGTACTCCACTAACCAGTT+AGG | - | chr6_3:24150537-24150556 | Msa0945390:intron | 40.0% | |
| TGATGAACCTAACTGGTTAG+TGG | + | chr6_3:24150547-24150566 | None:intergenic | 40.0% | |
| TTCGTTGTATTCCAAGGACA+TGG | - | chr6_3:24150637-24150656 | Msa0945390:intron | 40.0% | |
| !! | AATGGGTTATTCAGCCTCAA+AGG | - | chr6_3:24150715-24150734 | Msa0945390:intron | 40.0% |
| AACTTTCCTCAGTTCAACAC+AGG | + | chr6_3:24150777-24150796 | None:intergenic | 40.0% | |
| !! | AGGAGTACCTTTCTCAGATT+TGG | + | chr6_3:24151017-24151036 | None:intergenic | 40.0% |
| !!! | GCCAAAGATTGTTTTGGTTC+AGG | - | chr6_3:24151042-24151061 | Msa0945390:CDS | 40.0% |
| GCCTGAACCAAAACAATCTT+TGG | + | chr6_3:24151046-24151065 | None:intergenic | 40.0% | |
| ATCGTGCATTACAACTCCAT+TGG | - | chr6_3:24151096-24151115 | Msa0945390:CDS | 40.0% | |
| CGAGTCTTGATTGTATCCAA+TGG | + | chr6_3:24151115-24151134 | None:intergenic | 40.0% | |
| ! | TACAATCAAGACTCGGTTAC+AGG | - | chr6_3:24151120-24151139 | Msa0945390:CDS | 40.0% |
| TATTATGAACGCAACCCACT+TGG | - | chr6_3:24151354-24151373 | Msa0945390:intron | 40.0% | |
| ATTATGAACGCAACCCACTT+GGG | - | chr6_3:24151355-24151374 | Msa0945390:intron | 40.0% | |
| ! | ATTCTCTCTGGTGCCAATTT+AGG | - | chr6_3:24151439-24151458 | Msa0945390:intron | 40.0% |
| AATTGATCAGTGAGGATGGT+TGG | - | chr6_3:24151782-24151801 | Msa0945390:intron | 40.0% | |
| ATTTGTCAGCATGTCAGCAT+GGG | - | chr6_3:24151833-24151852 | Msa0945390:intron | 40.0% | |
| AGAAACACAAAACTGGGATG+TGG | + | chr6_3:24152121-24152140 | None:intergenic | 40.0% | |
| AAGGTTGAATCACACCTATC+TGG | + | chr6_3:24152189-24152208 | None:intergenic | 40.0% | |
| ! | CTTCTTCATCTTTTGCGCAT+AGG | + | chr6_3:24152405-24152424 | None:intergenic | 40.0% |
| !! | GCAAAAGATGAAGAAGCGTT+TGG | - | chr6_3:24152409-24152428 | Msa0945390:intron | 40.0% |
| ! | CATAGTTTGGGACCATATCT+TGG | + | chr6_3:24152466-24152485 | None:intergenic | 40.0% |
| !!! | GGATGAGTTGATTTTGGATG+TGG | - | chr6_3:24152506-24152525 | Msa0945390:intron | 40.0% |
| !!! | GATGTGGGATGAGTTGATTT+TGG | - | chr6_3:24152522-24152541 | Msa0945390:intron | 40.0% |
| TGCTCCTACAACTTGAACAT+TGG | - | chr6_3:24152571-24152590 | Msa0945390:intron | 40.0% | |
| ! | TACCTGTCCCAGTTGATTTC+GGG | + | chr6_3:24147357-24147376 | None:intergenic | 45.0% |
| ! | GCATATTTGCCGGTTAAGCT+AGG | + | chr6_3:24147737-24147756 | None:intergenic | 45.0% |
| !! | AACACAAAGTGGAGGTATCG+GGG | + | chr6_3:24147798-24147817 | None:intergenic | 45.0% |
| CTCTGTAACCGTAATTACGG+CGG | - | chr6_3:24148008-24148027 | Msa0945390:intron | 45.0% | |
| CGGTGAACCGTCACTATATA+CGG | - | chr6_3:24148103-24148122 | Msa0945390:intron | 45.0% | |
| CATCCGTGGAAGCTAGATAT+TGG | - | chr6_3:24148445-24148464 | Msa0945390:intron | 45.0% | |
| ! | CCACCAATATCTAGCTTCCA+CGG | + | chr6_3:24148451-24148470 | None:intergenic | 45.0% |
| CGTGGAAGCTAGATATTGGT+GGG | - | chr6_3:24148449-24148468 | Msa0945390:intron | 45.0% | |
| GTGGAAGCTAGATATTGGTG+GGG | - | chr6_3:24148450-24148469 | Msa0945390:intron | 45.0% | |
| TCTGTGGAAGGTAGATCTTG+TGG | - | chr6_3:24148655-24148674 | Msa0945390:intron | 45.0% | |
| CTGTGGAAGGTAGATCTTGT+GGG | - | chr6_3:24148656-24148675 | Msa0945390:intron | 45.0% | |
| TGTGGAAGGTAGATCTTGTG+GGG | - | chr6_3:24148657-24148676 | Msa0945390:intron | 45.0% | |
| ! | CTAGTCTTCACAACAGAGAC+AGG | + | chr6_3:24148862-24148881 | None:intergenic | 45.0% |
| CTGTCTCTGTTGTGAAGACT+AGG | - | chr6_3:24148860-24148879 | Msa0945390:intron | 45.0% | |
| TGTTGTGAAGACTAGGATGC+AGG | - | chr6_3:24148867-24148886 | Msa0945390:intron | 45.0% | |
| GGTTGCTTCAAACCATACTG+CGG | - | chr6_3:24148888-24148907 | Msa0945390:intron | 45.0% | |
| ! | TTGAAGGAAGCCACTTGTTG+TGG | + | chr6_3:24149043-24149062 | None:intergenic | 45.0% |
| GTATTCGGTCTACGTTGTCT+CGG | - | chr6_3:24149637-24149656 | Msa0945390:intron | 45.0% | |
| ACTTGGCACGATGAAAGACA+GGG | + | chr6_3:24149741-24149760 | None:intergenic | 45.0% | |
| TACTTGGCACGATGAAAGAC+AGG | + | chr6_3:24149742-24149761 | None:intergenic | 45.0% | |
| !! | AGCCAAAAGTTGATGGTGCA+AGG | - | chr6_3:24150111-24150130 | Msa0945390:intron | 45.0% |
| !! | GCCAAAAGTTGATGGTGCAA+GGG | - | chr6_3:24150112-24150131 | Msa0945390:intron | 45.0% |
| ! | ACCCTTGCACCATCAACTTT+TGG | + | chr6_3:24150116-24150135 | None:intergenic | 45.0% |
| CATCCAAGCCCCACTATATT+GGG | + | chr6_3:24150151-24150170 | None:intergenic | 45.0% | |
| ACATCCAAGCCCCACTATAT+TGG | + | chr6_3:24150152-24150171 | None:intergenic | 45.0% | |
| TGATAAGGTCTGAGGGAATC+CGG | - | chr6_3:24150183-24150202 | Msa0945390:intron | 45.0% | |
| GCTCAAGTCAACGCTTCTTA+TGG | - | chr6_3:24150278-24150297 | Msa0945390:intron | 45.0% | |
| CAAGTCAACGCTTCTTATGG+AGG | - | chr6_3:24150281-24150300 | Msa0945390:intron | 45.0% | |
| CTTCTTATGGAGGTGAGACA+TGG | - | chr6_3:24150291-24150310 | Msa0945390:intron | 45.0% | |
| CGGCCTAGCAGTTTAATAGA+CGG | + | chr6_3:24150427-24150446 | None:intergenic | 45.0% | |
| CGTCTATTAAACTGCTAGGC+CGG | - | chr6_3:24150425-24150444 | Msa0945390:intron | 45.0% | |
| TATTAAACTGCTAGGCCGGT+AGG | - | chr6_3:24150429-24150448 | Msa0945390:intron | 45.0% | |
| !! | AGGTAGTTTTGCCATGTCCT+TGG | + | chr6_3:24150651-24150670 | None:intergenic | 45.0% |
| AGCCTTGCCAGATCATGTAA+TGG | - | chr6_3:24150697-24150716 | Msa0945390:intron | 45.0% | |
| GCCTTGCCAGATCATGTAAT+GGG | - | chr6_3:24150698-24150717 | Msa0945390:intron | 45.0% | |
| ACCCATTACATGATCTGGCA+AGG | + | chr6_3:24150702-24150721 | None:intergenic | 45.0% | |
| TTGGTACCTGTGTTGAACTG+AGG | - | chr6_3:24150768-24150787 | Msa0945390:intron | 45.0% | |
| GATGACGCCAAATCTGAGAA+AGG | - | chr6_3:24151007-24151026 | Msa0945390:CDS | 45.0% | |
| !!! | ATTGTTTTGGTTCAGGCAGC+AGG | - | chr6_3:24151049-24151068 | Msa0945390:CDS | 45.0% |
| !!! | TTGTTTTGGTTCAGGCAGCA+GGG | - | chr6_3:24151050-24151069 | Msa0945390:CDS | 45.0% |
| ! | TCTCTGGTGCCAATTTAGGT+GGG | - | chr6_3:24151443-24151462 | Msa0945390:intron | 45.0% |
| GCTAAACAGCCCACCTAAAT+TGG | + | chr6_3:24151455-24151474 | None:intergenic | 45.0% | |
| ! | GTGATGGGACATGGAAAGAA+AGG | - | chr6_3:24151736-24151755 | Msa0945390:intron | 45.0% |
| GCTGACATGCTGACAAATCT+TGG | + | chr6_3:24151831-24151850 | None:intergenic | 45.0% | |
| GATTTGTCAGCATGTCAGCA+TGG | - | chr6_3:24151832-24151851 | Msa0945390:intron | 45.0% | |
| TTTGTCAGCATGTCAGCATG+GGG | - | chr6_3:24151834-24151853 | Msa0945390:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTGTAA+TGG | - | chr6_3:24150881-24150900 | Msa0945390:intron | 5.0% |
| GACGCCCGACCTAACAATTT+CGG | + | chr6_3:24147759-24147778 | None:intergenic | 50.0% | |
| GCCGAATGGTAGGGTTCAAT+TGG | - | chr6_3:24148069-24148088 | Msa0945390:intron | 50.0% | |
| ACAGTCTAATCGTGCCACGT+AGG | - | chr6_3:24148166-24148185 | Msa0945390:intron | 50.0% | |
| TCAATCCAGCGAAACCTACG+TGG | + | chr6_3:24148183-24148202 | None:intergenic | 50.0% | |
| CCGTGGAAGCTAGATATTGG+TGG | - | chr6_3:24148448-24148467 | Msa0945390:intron | 50.0% | |
| GTGGAAGGTAGATCTTGTGG+GGG | - | chr6_3:24148658-24148677 | Msa0945390:intron | 50.0% | |
| ATGCACTTCTCTCCGCAGTA+TGG | + | chr6_3:24148903-24148922 | None:intergenic | 50.0% | |
| CTCAAGACAGATGGCATTCG+TGG | - | chr6_3:24148943-24148962 | Msa0945390:three_prime_UTR | 50.0% | |
| GATTCTGGCAGGAATTGCTC+CGG | + | chr6_3:24148998-24149017 | None:intergenic | 50.0% | |
| GCCTTAGAGACCACAACAAG+TGG | - | chr6_3:24149030-24149049 | Msa0945390:three_prime_UTR | 50.0% | |
| !! | GCCACTTGTTGTGGTCTCTA+AGG | + | chr6_3:24149034-24149053 | None:intergenic | 50.0% |
| !! | TTGATGGTGCAAGGGTACTC+AGG | - | chr6_3:24150120-24150139 | Msa0945390:intron | 50.0% |
| TCAGGCCATGCCCAATATAG+TGG | - | chr6_3:24150138-24150157 | Msa0945390:intron | 50.0% | |
| CAGGCCATGCCCAATATAGT+GGG | - | chr6_3:24150139-24150158 | Msa0945390:intron | 50.0% | |
| AGGCCATGCCCAATATAGTG+GGG | - | chr6_3:24150140-24150159 | Msa0945390:intron | 50.0% | |
| AAGCCCCACTATATTGGGCA+TGG | + | chr6_3:24150146-24150165 | None:intergenic | 50.0% | |
| ! | ATGCCCAATATAGTGGGGCT+TGG | - | chr6_3:24150145-24150164 | Msa0945390:intron | 50.0% |
| GATAAGGTCTGAGGGAATCC+GGG | - | chr6_3:24150184-24150203 | Msa0945390:intron | 50.0% | |
| ATAAGGTCTGAGGGAATCCG+GGG | - | chr6_3:24150185-24150204 | Msa0945390:intron | 50.0% | |
| GAATCCGGGGTTTATACCGA+GGG | - | chr6_3:24150198-24150217 | Msa0945390:intron | 50.0% | |
| CAAACCCTCGGTATAAACCC+CGG | + | chr6_3:24150205-24150224 | None:intergenic | 50.0% | |
| TCACCATCTAGCGCTGTTTG+TGG | - | chr6_3:24150245-24150264 | Msa0945390:intron | 50.0% | |
| CACCATCTAGCGCTGTTTGT+GGG | - | chr6_3:24150246-24150265 | Msa0945390:intron | 50.0% | |
| CGCTGTTTGTGGGCAAGTTA+CGG | - | chr6_3:24150256-24150275 | Msa0945390:intron | 50.0% | |
| !!! | TGTTTTGGTTCAGGCAGCAG+GGG | - | chr6_3:24151051-24151070 | Msa0945390:CDS | 50.0% |
| GAGAGAGAGAGAGAGAGAGA+CGG | + | chr6_3:24151225-24151244 | None:intergenic | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | - | chr6_3:24151386-24151405 | Msa0945390:intron | 50.0% |
| GAATCGAACCTGAGACCTTG+CGG | + | chr6_3:24151423-24151442 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+TGG | - | chr6_3:24151427-24151446 | Msa0945390:intron | 50.0% | |
| ! | CTCTCTGGTGCCAATTTAGG+TGG | - | chr6_3:24151442-24151461 | Msa0945390:intron | 50.0% |
| GACTCAATTGCTTGCACCAC+AGG | - | chr6_3:24151714-24151733 | Msa0945390:intron | 50.0% | |
| ATTGCTTGCACCACAGGTGA+TGG | - | chr6_3:24151720-24151739 | Msa0945390:intron | 50.0% | |
| TTGCTTGCACCACAGGTGAT+GGG | - | chr6_3:24151721-24151740 | Msa0945390:intron | 50.0% | |
| TTTCCATGTCCCATCACCTG+TGG | + | chr6_3:24151733-24151752 | None:intergenic | 50.0% | |
| GATCAGTGAGGATGGTTGGA+AGG | - | chr6_3:24151786-24151805 | Msa0945390:intron | 50.0% | |
| ! | GAAGCGTTTGGTCAGCAATC+TGG | - | chr6_3:24152421-24152440 | Msa0945390:intron | 50.0% |
| TGGCTGCTCCCGAAATCAAC+TGG | - | chr6_3:24147346-24147365 | Msa0945390:three_prime_UTR | 55.0% | |
| GGCTGCTCCCGAAATCAACT+GGG | - | chr6_3:24147347-24147366 | Msa0945390:three_prime_UTR | 55.0% | |
| CTCCCGAAATCAACTGGGAC+AGG | - | chr6_3:24147352-24147371 | Msa0945390:three_prime_UTR | 55.0% | |
| ACACAGGCTGCCATAGCGAA+TGG | - | chr6_3:24149094-24149113 | Msa0945390:intron | 55.0% | |
| GCTGCCATAGCGAATGGCAT+TGG | - | chr6_3:24149100-24149119 | Msa0945390:intron | 55.0% | |
| ! | GCCATAGCGAATGGCATTGG+TGG | - | chr6_3:24149103-24149122 | Msa0945390:intron | 55.0% |
| GCCACCAATGCCATTCGCTA+TGG | + | chr6_3:24149107-24149126 | None:intergenic | 55.0% | |
| GGAATCCGGGGTTTATACCG+AGG | - | chr6_3:24150197-24150216 | Msa0945390:intron | 55.0% | |
| CGGGGTTTATACCGAGGGTT+TGG | - | chr6_3:24150203-24150222 | Msa0945390:intron | 55.0% | |
| TGCCCACAAACAGCGCTAGA+TGG | + | chr6_3:24150251-24150270 | None:intergenic | 55.0% | |
| !!! | GTTTTGGTTCAGGCAGCAGG+GGG | - | chr6_3:24151052-24151071 | Msa0945390:CDS | 55.0% |
| !! | GCAGCAGGGGGTATTATTGC+TGG | - | chr6_3:24151064-24151083 | Msa0945390:CDS | 55.0% |
| TGAACGCAACCCACTTGGGT+TGG | - | chr6_3:24151359-24151378 | Msa0945390:intron | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | - | chr6_3:24151373-24151392 | Msa0945390:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | - | chr6_3:24151378-24151397 | Msa0945390:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | - | chr6_3:24151379-24151398 | Msa0945390:intron | 55.0% |
| AGACCCAAGCCAATACCACC+AGG | + | chr6_3:24151385-24151404 | None:intergenic | 55.0% | |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | - | chr6_3:24151385-24151404 | Msa0945390:intron | 55.0% |
| GTTAGGTCGGGCGTCATGAC+CGG | - | chr6_3:24147764-24147783 | Msa0945390:intron | 60.0% | |
| TTAGGTCGGGCGTCATGACC+GGG | - | chr6_3:24147765-24147784 | Msa0945390:intron | 60.0% | |
| !! | AGGTATCGGGGTTCGAACCC+CGG | + | chr6_3:24147786-24147805 | None:intergenic | 60.0% |
| TCGTGCCACGTAGGTTTCGC+TGG | - | chr6_3:24148175-24148194 | Msa0945390:intron | 60.0% | |
| GGCAGGAATTGCTCCGGTGA+CGG | + | chr6_3:24148992-24149011 | None:intergenic | 60.0% | |
| ACCACCAGGCCAACCCAAGT+GGG | + | chr6_3:24151371-24151390 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | + | chr6_3:24151372-24151391 | None:intergenic | 60.0% | |
| TCGAACCTGAGACCTTGCGG+AGG | + | chr6_3:24151420-24151439 | None:intergenic | 60.0% | |
| !! | GCACCACAGGTGATGGGACA+TGG | - | chr6_3:24151727-24151746 | Msa0945390:intron | 60.0% |
| TAGGTCGGGCGTCATGACCG+GGG | - | chr6_3:24147766-24147785 | Msa0945390:intron | 65.0% | |
| GGGTTTGGCACTGCCGTCAC+CGG | - | chr6_3:24148976-24148995 | Msa0945390:three_prime_UTR | 65.0% | |
| !! | GCAACCCACTTGGGTTGGCC+TGG | - | chr6_3:24151364-24151383 | Msa0945390:intron | 65.0% |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | - | chr6_3:24151367-24151386 | Msa0945390:intron | 65.0% |
| ! | TGGGAGTGTGCTCCTCCGCA+AGG | - | chr6_3:24151405-24151424 | Msa0945390:intron | 65.0% |
| GTGCTCCTCCGCAAGGTCTC+AGG | - | chr6_3:24151412-24151431 | Msa0945390:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 24147243 | 24152828 | 24147243 | ID=Msa0945390;Name=Msa0945390 |
| chr6_3 | mRNA | 24147243 | 24152828 | 24147243 | ID=Msa0945390-mRNA-1;Parent=Msa0945390;Name=Msa0945390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=102|1|1|1|0.8|0.5|6|1027|102 |
| chr6_3 | exon | 24147243 | 24147673 | 24147243 | ID=Msa0945390-mRNA-1:exon:6836;Parent=Msa0945390-mRNA-1 |
| chr6_3 | exon | 24148183 | 24148335 | 24148183 | ID=Msa0945390-mRNA-1:exon:6835;Parent=Msa0945390-mRNA-1 |
| chr6_3 | exon | 24148930 | 24149074 | 24148930 | ID=Msa0945390-mRNA-1:exon:6834;Parent=Msa0945390-mRNA-1 |
| chr6_3 | exon | 24149769 | 24149963 | 24149769 | ID=Msa0945390-mRNA-1:exon:6833;Parent=Msa0945390-mRNA-1 |
| chr6_3 | exon | 24150897 | 24151279 | 24150897 | ID=Msa0945390-mRNA-1:exon:6832;Parent=Msa0945390-mRNA-1 |
| chr6_3 | exon | 24152698 | 24152828 | 24152698 | ID=Msa0945390-mRNA-1:exon:6831;Parent=Msa0945390-mRNA-1 |
| chr6_3 | five_prime_UTR | 24152727 | 24152828 | 24152727 | ID=Msa0945390-mRNA-1:five_prime_utr;Parent=Msa0945390-mRNA-1 |
| chr6_3 | CDS | 24152698 | 24152726 | 24152698 | ID=Msa0945390-mRNA-1:cds;Parent=Msa0945390-mRNA-1 |
| chr6_3 | CDS | 24151000 | 24151279 | 24151000 | ID=Msa0945390-mRNA-1:cds;Parent=Msa0945390-mRNA-1 |
| chr6_3 | three_prime_UTR | 24150897 | 24150999 | 24150897 | ID=Msa0945390-mRNA-1:three_prime_utr;Parent=Msa0945390-mRNA-1 |
| chr6_3 | three_prime_UTR | 24149769 | 24149963 | 24149769 | ID=Msa0945390-mRNA-1:three_prime_utr;Parent=Msa0945390-mRNA-1 |
| chr6_3 | three_prime_UTR | 24148930 | 24149074 | 24148930 | ID=Msa0945390-mRNA-1:three_prime_utr;Parent=Msa0945390-mRNA-1 |
| chr6_3 | three_prime_UTR | 24148183 | 24148335 | 24148183 | ID=Msa0945390-mRNA-1:three_prime_utr;Parent=Msa0945390-mRNA-1 |
| chr6_3 | three_prime_UTR | 24147243 | 24147673 | 24147243 | ID=Msa0945390-mRNA-1:three_prime_utr;Parent=Msa0945390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
