Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946230 | XP_003618830.1 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 2.77e-140 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946230 | sp|Q9LK32|Y3721_ARATH | 39.766 | 171 | 73 | 6 | 67 | 226 | 82 | 233 | 1.59e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946230 | G7KNM5 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 1.32e-140 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0946230 | Msa0979450 | 0.936816 | 9.477724e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946230 | MtrunA17_Chr6g0459241 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 2.54e-144 | 402 |
| Msa0946230 | MtrunA17_Chr7g0225841 | 55.020 | 249 | 69 | 13 | 1 | 230 | 1 | 225 | 2.19e-69 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946230 | AT3G01860.1 | 36.585 | 164 | 86 | 4 | 62 | 218 | 58 | 210 | 2.34e-23 | 94.4 |
| Msa0946230 | AT3G01860.2 | 35.948 | 153 | 85 | 2 | 70 | 218 | 3 | 146 | 4.93e-23 | 91.7 |
| Msa0946230 | AT3G27210.1 | 39.766 | 171 | 73 | 6 | 67 | 226 | 82 | 233 | 1.62e-19 | 84.3 |
| Msa0946230 | AT5G40860.1 | 43.902 | 82 | 44 | 2 | 67 | 146 | 91 | 172 | 1.88e-11 | 62.4 |
Find 57 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAATATATACTCTTAT+TGG | 0.142077 | 6_3:+26646234 | None:intergenic |
| ACGACCAACTTCAATGATTT+TGG | 0.167636 | 6_3:-26645776 | Msa0946230:intron |
| AATCACAAGTTTCTCAGTTT+TGG | 0.220423 | 6_3:+26645862 | None:intergenic |
| ACCCCAGTTCACCATGCTTT+TGG | 0.230967 | 6_3:-26643191 | Msa0946230:CDS |
| TTTCAAATTCATATAGCTTA+TGG | 0.244345 | 6_3:+26642681 | None:intergenic |
| GATTCCTCCATCACCCATTA+AGG | 0.264914 | 6_3:-26645843 | Msa0946230:CDS |
| ATGCAAAACAGCGACGATTT+AGG | 0.307424 | 6_3:+26642897 | None:intergenic |
| TTGTGAGAAAATTGAGGAAT+TGG | 0.337673 | 6_3:+26646115 | None:intergenic |
| GGAGTTGAGTTTGAGGATTT+AGG | 0.339451 | 6_3:+26642993 | None:intergenic |
| TGTGATGAGGTGGTGACTAT+TGG | 0.342975 | 6_3:+26646210 | None:intergenic |
| TTTCTTTACCATCATCATCT+TGG | 0.344411 | 6_3:+26643051 | None:intergenic |
| TTTCCATCTACTGCAATTGC+AGG | 0.345837 | 6_3:+26642822 | None:intergenic |
| TTGAAACAATGTTGTTTGTT+TGG | 0.350400 | 6_3:-26642776 | Msa0946230:three_prime_UTR |
| GTCCCAAAAGCATGGTGAAC+TGG | 0.354754 | 6_3:+26643188 | None:intergenic |
| AACCACTGAGTCTTTGTTCA+AGG | 0.378910 | 6_3:+26642747 | None:intergenic |
| GCTAAATATATACTCTTATT+GGG | 0.380283 | 6_3:+26646235 | None:intergenic |
| ATCTGAGTCTATCCAAGCTT+TGG | 0.382558 | 6_3:+26644101 | None:intergenic |
| TTTCTTATCTGGTGATGATT+CGG | 0.386046 | 6_3:+26643115 | None:intergenic |
| AGGATTTAGGTAAAACATCT+TGG | 0.389572 | 6_3:+26643006 | None:intergenic |
| TAGCTTATGGTTCTTTACAT+AGG | 0.408926 | 6_3:+26642694 | None:intergenic |
| AGTCCTGCAATTGCAGTAGA+TGG | 0.422272 | 6_3:-26642825 | Msa0946230:CDS |
| GAAAAGTATGTAAACATAAA+CGG | 0.431483 | 6_3:-26642662 | Msa0946230:three_prime_UTR |
| AGCTTATGGTTCTTTACATA+GGG | 0.448109 | 6_3:+26642695 | None:intergenic |
| AAAGAGGATTGGTCTTGAAA+AGG | 0.465992 | 6_3:+26646160 | None:intergenic |
| GCGATAAGGAGTTGAGTTTG+AGG | 0.466343 | 6_3:+26642986 | None:intergenic |
| GAGTTAGCGCCCGAGCGATA+AGG | 0.471410 | 6_3:+26642972 | None:intergenic |
| GATTGTTCCTTAATGGGTGA+TGG | 0.472075 | 6_3:+26645836 | None:intergenic |
| GGTAAAACATCTTGGATGGT+TGG | 0.477445 | 6_3:+26643014 | None:intergenic |
| ACTTGAAGTTATCACCTTCA+AGG | 0.485005 | 6_3:-26645802 | Msa0946230:CDS |
| CGTGTCGTAGCTTTAGAGAA+AGG | 0.488970 | 6_3:-26642860 | Msa0946230:CDS |
| AACTCAACTCCTTATCGCTC+GGG | 0.501294 | 6_3:-26642981 | Msa0946230:CDS |
| AAGGGTTTGTGAGAAAATTG+AGG | 0.514702 | 6_3:+26646109 | None:intergenic |
| TCCCAAAAGCATGGTGAACT+GGG | 0.517212 | 6_3:+26643189 | None:intergenic |
| TTTAGGTAAAACATCTTGGA+TGG | 0.517665 | 6_3:+26643010 | None:intergenic |
| AAACTCAACTCCTTATCGCT+CGG | 0.528053 | 6_3:-26642982 | Msa0946230:CDS |
| AGGAATTGGAGAGAGAAAGA+AGG | 0.529639 | 6_3:+26646129 | None:intergenic |
| TGAAGTTCTGTTCTGAGAAG+AGG | 0.532716 | 6_3:+26643148 | None:intergenic |
| CATACCAAAATCATTGAAGT+TGG | 0.547950 | 6_3:+26645772 | None:intergenic |
| CTACGACACGAAGTCAAACT+CGG | 0.549226 | 6_3:+26642873 | None:intergenic |
| AAAGACAACCAAGATGATGA+TGG | 0.570346 | 6_3:-26643059 | Msa0946230:CDS |
| AAGTTGGTCGTTGACCTTGA+AGG | 0.585987 | 6_3:+26645788 | None:intergenic |
| GAAGAGGCTTTGTTCAGACC+AGG | 0.587152 | 6_3:+26643164 | None:intergenic |
| GATGATTTCTATAGTGTCAA+CGG | 0.589103 | 6_3:-26644072 | Msa0946230:CDS |
| TGTTCCTTAATGGGTGATGG+AGG | 0.590309 | 6_3:+26645839 | None:intergenic |
| GACCAGGTGTCCCAAAAGCA+TGG | 0.593153 | 6_3:+26643180 | None:intergenic |
| CACATTGCAGTAGAACTCAA+AGG | 0.601804 | 6_3:+26642799 | None:intergenic |
| GTAGCTTTAGAGAAAGGAGG+AGG | 0.614404 | 6_3:-26642854 | Msa0946230:CDS |
| TTCCTTGAACAAAGACTCAG+TGG | 0.622094 | 6_3:-26642749 | Msa0946230:three_prime_UTR |
| CAATGTTGTTTGTGATGAGG+TGG | 0.626115 | 6_3:+26646200 | None:intergenic |
| GGTGATGATTCGGATCGAGA+AGG | 0.629628 | 6_3:+26643125 | None:intergenic |
| CAACAATGTTGTTTGTGATG+AGG | 0.639166 | 6_3:+26646197 | None:intergenic |
| GTCGTAGCTTTAGAGAAAGG+AGG | 0.648382 | 6_3:-26642857 | Msa0946230:CDS |
| GCAGACTTTACACCATCTCG+TGG | 0.665071 | 6_3:-26643218 | Msa0946230:intron |
| CAGTGAAAGAATCACAAGTG+AGG | 0.673772 | 6_3:-26642940 | Msa0946230:CDS |
| ACTGGGGTGTTACCACGAGA+TGG | 0.693109 | 6_3:+26643206 | None:intergenic |
| CCCAAAAGCATGGTGAACTG+GGG | 0.715512 | 6_3:+26643190 | None:intergenic |
| GATTTCTATAGTGTCAACGG+TGG | 0.734317 | 6_3:-26644069 | Msa0946230:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTTATTTTTAA+AGG | - | chr6_3:26645235-26645254 | Msa0946230:intron | 0.0% |
| !!! | TTAATAAATGATTTGTTTTT+TGG | - | chr6_3:26643269-26643288 | Msa0946230:intron | 10.0% |
| !!! | TTATCATCTTTTTGATTAAT+GGG | - | chr6_3:26642891-26642910 | Msa0946230:CDS | 15.0% |
| !! | AATTATTAAAAACATGAAAC+TGG | + | chr6_3:26643790-26643809 | None:intergenic | 15.0% |
| !! | AGAAAAGAAAAAGAAAAAAA+AGG | + | chr6_3:26644071-26644090 | None:intergenic | 15.0% |
| !!! | TTTATTTCTGATTAATTAGT+TGG | - | chr6_3:26644306-26644325 | Msa0946230:intron | 15.0% |
| !! | ATTTATCAATAATTCATTAG+GGG | + | chr6_3:26644417-26644436 | None:intergenic | 15.0% |
| !! | CATTTATCAATAATTCATTA+GGG | + | chr6_3:26644418-26644437 | None:intergenic | 15.0% |
| !!! | TGATTTTCTTAAATTATTAG+CGG | - | chr6_3:26644555-26644574 | Msa0946230:intron | 15.0% |
| !! | CTTATTAAACTCTAATTATA+TGG | - | chr6_3:26645394-26645413 | Msa0946230:intron | 15.0% |
| !! | GCTAAATATATACTCTTATT+GGG | + | chr6_3:26642621-26642640 | None:intergenic | 20.0% |
| !! | TGCTAAATATATACTCTTAT+TGG | + | chr6_3:26642622-26642641 | None:intergenic | 20.0% |
| !! | AAAATGAAGAATGAGAAAAA+GGG | + | chr6_3:26642795-26642814 | None:intergenic | 20.0% |
| !! | AAAAATGAAGAATGAGAAAA+AGG | + | chr6_3:26642796-26642815 | None:intergenic | 20.0% |
| !!! | GTTATCATCTTTTTGATTAA+TGG | - | chr6_3:26642890-26642909 | Msa0946230:CDS | 20.0% |
| !!! | TTTTTAGATTGTTCCTTAAT+GGG | + | chr6_3:26643026-26643045 | None:intergenic | 20.0% |
| !!! | ATTTTTAGATTGTTCCTTAA+TGG | + | chr6_3:26643027-26643046 | None:intergenic | 20.0% |
| !! | ATTAAGGAACAATCTAAAAA+TGG | - | chr6_3:26643026-26643045 | Msa0946230:CDS | 20.0% |
| !!! | TTTTTTTGTAACACTTTCTT+AGG | - | chr6_3:26643160-26643179 | Msa0946230:CDS | 20.0% |
| !!! | GTTGTTTTTTTTCTTTTTCT+GGG | - | chr6_3:26643182-26643201 | Msa0946230:CDS | 20.0% |
| !! | ATAACACTTCAACAAAATTA+CGG | + | chr6_3:26643507-26643526 | None:intergenic | 20.0% |
| !! | TTTGTTAATCATGTTTGTTT+AGG | - | chr6_3:26643607-26643626 | Msa0946230:intron | 20.0% |
| !! | ATATTAATTCACCTATGATT+AGG | - | chr6_3:26643669-26643688 | Msa0946230:intron | 20.0% |
| !! | ATGATAAATTTCTACTTGTT+TGG | + | chr6_3:26643725-26643744 | None:intergenic | 20.0% |
| !!! | TTTATGTTGTATTTAAAGCA+CGG | - | chr6_3:26643871-26643890 | Msa0946230:intron | 20.0% |
| !! | TGTATGTATGAATATGAAAA+TGG | - | chr6_3:26644091-26644110 | Msa0946230:CDS | 20.0% |
| !! | CAACAAATTAATCAGAATTA+AGG | + | chr6_3:26644234-26644253 | None:intergenic | 20.0% |
| !!! | CTTAATTCTGATTAATTTGT+TGG | - | chr6_3:26644232-26644251 | Msa0946230:intron | 20.0% |
| !! | CAAAATTCAAAACAAACAAA+AGG | + | chr6_3:26644373-26644392 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTGTTTTGAATTT+TGG | - | chr6_3:26644371-26644390 | Msa0946230:intron | 20.0% |
| !! | CCATTTATCAATAATTCATT+AGG | + | chr6_3:26644419-26644438 | None:intergenic | 20.0% |
| !! | CCTAATGAATTATTGATAAA+TGG | - | chr6_3:26644416-26644435 | Msa0946230:intron | 20.0% |
| !!! | TTTTTTTCTTCTTTCTGTAT+AGG | - | chr6_3:26644703-26644722 | Msa0946230:intron | 20.0% |
| !!! | TTATGATTTTTTTTTACCAG+AGG | - | chr6_3:26644831-26644850 | Msa0946230:intron | 20.0% |
| !!! | ATTTTCAAAGAGATTTTCAT+TGG | + | chr6_3:26645299-26645318 | None:intergenic | 20.0% |
| !! | GATATTATGACATAGAAAAA+TGG | - | chr6_3:26645320-26645339 | Msa0946230:intron | 20.0% |
| !! | CTCTAATTATATGGATTTAA+AGG | - | chr6_3:26645403-26645422 | Msa0946230:intron | 20.0% |
| !! | TTTCAAATTCATATAGCTTA+TGG | + | chr6_3:26646175-26646194 | None:intergenic | 20.0% |
| !!! | GAAAAGTATGTAAACATAAA+CGG | - | chr6_3:26646191-26646210 | Msa0946230:five_prime_UTR | 20.0% |
| !!! | AAAGAAGGAAAGTTTTAAAG+AGG | + | chr6_3:26642712-26642731 | None:intergenic | 25.0% |
| !!! | GTTTTTGGAATTATGCAAAA+GGG | + | chr6_3:26642765-26642784 | None:intergenic | 25.0% |
| !!! | AGTTTTTGGAATTATGCAAA+AGG | + | chr6_3:26642766-26642785 | None:intergenic | 25.0% |
| !!! | GTTATTGTTTTCTTTGTTGT+TGG | + | chr6_3:26642943-26642962 | None:intergenic | 25.0% |
| !!! | AAGCTAAAAGTTGCATTTTT+TGG | - | chr6_3:26642966-26642985 | Msa0946230:CDS | 25.0% |
| !!! | GTTGTTGTTTTGATCTTTTA+AGG | - | chr6_3:26643122-26643141 | Msa0946230:CDS | 25.0% |
| !!! | GGTTGTTTTTTTTCTTTTTC+TGG | - | chr6_3:26643181-26643200 | Msa0946230:CDS | 25.0% |
| ! | CAGTATTATAACCTAATCAT+AGG | + | chr6_3:26643683-26643702 | None:intergenic | 25.0% |
| ! | ACAAGTAGAAATTTATCATG+TGG | - | chr6_3:26643726-26643745 | Msa0946230:intron | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+TGG | + | chr6_3:26643959-26643978 | None:intergenic | 25.0% |
| ! | AAATTAATGAAGCATGGATA+CGG | + | chr6_3:26644047-26644066 | None:intergenic | 25.0% |
| ! | AAAGGTAAATTAATGAAGCA+TGG | + | chr6_3:26644053-26644072 | None:intergenic | 25.0% |
| !!! | CACTTTCATTTTAATGTCAA+CGG | + | chr6_3:26644174-26644193 | None:intergenic | 25.0% |
| !! | GTTTGAAATGTTACAAGAAA+TGG | + | chr6_3:26644656-26644675 | None:intergenic | 25.0% |
| !! | TATAATTTCAGCATCGAAAA+CGG | + | chr6_3:26644877-26644896 | None:intergenic | 25.0% |
| ! | TTGAAGAAAAACAATAGTAC+AGG | - | chr6_3:26644929-26644948 | Msa0946230:intron | 25.0% |
| ! | ATAACGTCAATTTATGAAGA+AGG | - | chr6_3:26645007-26645026 | Msa0946230:intron | 25.0% |
| ! | ATATACACAATCAGCATAAA+CGG | - | chr6_3:26645426-26645445 | Msa0946230:intron | 25.0% |
| !!! | TTCTGAAATGAAAGAAATGA+AGG | - | chr6_3:26645530-26645549 | Msa0946230:intron | 25.0% |
| ! | ATTAGAGTTTAATGCACATT+CGG | + | chr6_3:26645593-26645612 | None:intergenic | 25.0% |
| !! | AACAGTTTCTTTTTCTTATC+TGG | + | chr6_3:26645752-26645771 | None:intergenic | 25.0% |
| !! | TTGAAACAATGTTGTTTGTT+TGG | - | chr6_3:26646077-26646096 | Msa0946230:five_prime_UTR | 25.0% |
| !!! | AGGAAAGTTTTAAAGAGGAT+TGG | + | chr6_3:26642707-26642726 | None:intergenic | 30.0% |
| TTGTGAGAAAATTGAGGAAT+TGG | + | chr6_3:26642741-26642760 | None:intergenic | 30.0% | |
| ! | AATCACAAGTTTCTCAGTTT+TGG | + | chr6_3:26642994-26643013 | None:intergenic | 30.0% |
| CATACCAAAATCATTGAAGT+TGG | + | chr6_3:26643084-26643103 | None:intergenic | 30.0% | |
| !! | CAACTTCAATGATTTTGGTA+TGG | - | chr6_3:26643082-26643101 | Msa0946230:CDS | 30.0% |
| CAACAACAAGAACAAACAAA+AGG | + | chr6_3:26643109-26643128 | None:intergenic | 30.0% | |
| TTTGATCTAAGTTGTTCTTG+TGG | - | chr6_3:26643307-26643326 | Msa0946230:intron | 30.0% | |
| TTGATCTAAGTTGTTCTTGT+GGG | - | chr6_3:26643308-26643327 | Msa0946230:intron | 30.0% | |
| ! | TGATGTTATTTGTGCGTATT+TGG | - | chr6_3:26643449-26643468 | Msa0946230:intron | 30.0% |
| AAGTGAGTTTGACAGAATTA+CGG | + | chr6_3:26643531-26643550 | None:intergenic | 30.0% | |
| ! | ATGTTTGTTTAGGATTGACA+TGG | - | chr6_3:26643617-26643636 | Msa0946230:intron | 30.0% |
| CAGTGTGTAATTATATGTGT+CGG | + | chr6_3:26644528-26644547 | None:intergenic | 30.0% | |
| TCTTAAATTATTAGCGGTGT+CGG | - | chr6_3:26644561-26644580 | Msa0946230:intron | 30.0% | |
| !!! | CATTTTTTGATTCCAAAGCT+TGG | - | chr6_3:26644740-26644759 | Msa0946230:intron | 30.0% |
| GATGATTTCTATAGTGTCAA+CGG | - | chr6_3:26644781-26644800 | Msa0946230:intron | 30.0% | |
| TTGAACAAATTTGAATCCTC+TGG | + | chr6_3:26644850-26644869 | None:intergenic | 30.0% | |
| CATAAATTGACGTTATGAAG+AGG | + | chr6_3:26645003-26645022 | None:intergenic | 30.0% | |
| AGTATAAAGTAAGTTTACCC+TGG | - | chr6_3:26645270-26645289 | Msa0946230:intron | 30.0% | |
| ! | TTTCTTATCTGGTGATGATT+CGG | + | chr6_3:26645741-26645760 | None:intergenic | 30.0% |
| TTTCTTTACCATCATCATCT+TGG | + | chr6_3:26645805-26645824 | None:intergenic | 30.0% | |
| TTTAGGTAAAACATCTTGGA+TGG | + | chr6_3:26645846-26645865 | None:intergenic | 30.0% | |
| AGGATTTAGGTAAAACATCT+TGG | + | chr6_3:26645850-26645869 | None:intergenic | 30.0% | |
| AGCTTATGGTTCTTTACATA+GGG | + | chr6_3:26646161-26646180 | None:intergenic | 30.0% | |
| TAGCTTATGGTTCTTTACAT+AGG | + | chr6_3:26646162-26646181 | None:intergenic | 30.0% | |
| ! | CAACAATGTTGTTTGTGATG+AGG | + | chr6_3:26642659-26642678 | None:intergenic | 35.0% |
| !! | AAAGAGGATTGGTCTTGAAA+AGG | + | chr6_3:26642696-26642715 | None:intergenic | 35.0% |
| AAGGGTTTGTGAGAAAATTG+AGG | + | chr6_3:26642747-26642766 | None:intergenic | 35.0% | |
| !! | AAAAAGGGTGTGTGAGTTTT+TGG | + | chr6_3:26642780-26642799 | None:intergenic | 35.0% |
| ACTTGAAGTTATCACCTTCA+AGG | - | chr6_3:26643051-26643070 | Msa0946230:CDS | 35.0% | |
| ! | ACGACCAACTTCAATGATTT+TGG | - | chr6_3:26643077-26643096 | Msa0946230:CDS | 35.0% |
| TGATCTAAGTTGTTCTTGTG+GGG | - | chr6_3:26643309-26643328 | Msa0946230:intron | 35.0% | |
| !!! | ACTGTTTCTGCTTTTATGTG+AGG | - | chr6_3:26643577-26643596 | Msa0946230:intron | 35.0% |
| GCACATGTGAATATGAAGAT+TGG | - | chr6_3:26643824-26643843 | Msa0946230:intron | 35.0% | |
| !! | TAATTACAAGTGTTGGTGTC+GGG | + | chr6_3:26643952-26643971 | None:intergenic | 35.0% |
| !! | GTAATTACAAGTGTTGGTGT+CGG | + | chr6_3:26643953-26643972 | None:intergenic | 35.0% |
| TGATTTATATCCAGATGCAG+AGG | - | chr6_3:26644118-26644137 | Msa0946230:CDS | 35.0% | |
| GATTTATATCCAGATGCAGA+GGG | - | chr6_3:26644119-26644138 | Msa0946230:CDS | 35.0% | |
| TCCTACTTAATTGAACTGAG+AGG | - | chr6_3:26644208-26644227 | Msa0946230:intron | 35.0% | |
| CAAAAGTAAAGCTGTCAGTA+TGG | + | chr6_3:26644259-26644278 | None:intergenic | 35.0% | |
| ! | GTAATTATATGTGTCGGTGT+CGG | + | chr6_3:26644522-26644541 | None:intergenic | 35.0% |
| TGATAGACACAAACTCTATG+AGG | + | chr6_3:26644633-26644652 | None:intergenic | 35.0% | |
| TACAATGTCGGTACAGAAAA+CGG | + | chr6_3:26644969-26644988 | None:intergenic | 35.0% | |
| GCTTGAGAATGATACAATGT+CGG | + | chr6_3:26644981-26645000 | None:intergenic | 35.0% | |
| ! | GTTTTACACTGATACTCGAT+AGG | + | chr6_3:26645352-26645371 | None:intergenic | 35.0% |
| GTTGCAAAAGAAATGTGTTG+TGG | + | chr6_3:26645490-26645509 | None:intergenic | 35.0% | |
| AAAGACAACCAAGATGATGA+TGG | - | chr6_3:26645794-26645813 | Msa0946230:CDS | 35.0% | |
| ! | CAATGTTGTTTGTGATGAGG+TGG | + | chr6_3:26642656-26642675 | None:intergenic | 40.0% |
| AGGAATTGGAGAGAGAAAGA+AGG | + | chr6_3:26642727-26642746 | None:intergenic | 40.0% | |
| ! | GATTGTTCCTTAATGGGTGA+TGG | + | chr6_3:26643020-26643039 | None:intergenic | 40.0% |
| TTGTGGGGTCTCTTAATATG+AGG | - | chr6_3:26643324-26643343 | Msa0946230:intron | 40.0% | |
| CACATCATATCAGCAAAGAC+AGG | + | chr6_3:26643758-26643777 | None:intergenic | 40.0% | |
| CTGTCTTTGCTGATATGATG+TGG | - | chr6_3:26643756-26643775 | Msa0946230:intron | 40.0% | |
| CTTTGCTGATATGATGTGGT+TGG | - | chr6_3:26643760-26643779 | Msa0946230:intron | 40.0% | |
| TTTAATAGACCCTCTGCATC+TGG | + | chr6_3:26644131-26644150 | None:intergenic | 40.0% | |
| GCCTCTCAGTTCAATTAAGT+AGG | + | chr6_3:26644212-26644231 | None:intergenic | 40.0% | |
| ATGAGGCACGTATACGTATA+CGG | + | chr6_3:26644616-26644635 | None:intergenic | 40.0% | |
| ATCTGAGTCTATCCAAGCTT+TGG | + | chr6_3:26644755-26644774 | None:intergenic | 40.0% | |
| GATTTCTATAGTGTCAACGG+TGG | - | chr6_3:26644784-26644803 | Msa0946230:intron | 40.0% | |
| ACGGTTATGTTTCCAACGTA+GGG | + | chr6_3:26645181-26645200 | None:intergenic | 40.0% | |
| ! | GAGATTTTCATTGGAAGCCA+GGG | + | chr6_3:26645290-26645309 | None:intergenic | 40.0% |
| ! | AGAGATTTTCATTGGAAGCC+AGG | + | chr6_3:26645291-26645310 | None:intergenic | 40.0% |
| !! | TGAAGTTCTGTTCTGAGAAG+AGG | + | chr6_3:26645708-26645727 | None:intergenic | 40.0% |
| GGTAAAACATCTTGGATGGT+TGG | + | chr6_3:26645842-26645861 | None:intergenic | 40.0% | |
| GGAGTTGAGTTTGAGGATTT+AGG | + | chr6_3:26645863-26645882 | None:intergenic | 40.0% | |
| AAACTCAACTCCTTATCGCT+CGG | - | chr6_3:26645871-26645890 | Msa0946230:CDS | 40.0% | |
| CAGTGAAAGAATCACAAGTG+AGG | - | chr6_3:26645913-26645932 | Msa0946230:CDS | 40.0% | |
| ATGCAAAACAGCGACGATTT+AGG | + | chr6_3:26645959-26645978 | None:intergenic | 40.0% | |
| TTTCCATCTACTGCAATTGC+AGG | + | chr6_3:26646034-26646053 | None:intergenic | 40.0% | |
| CACATTGCAGTAGAACTCAA+AGG | + | chr6_3:26646057-26646076 | None:intergenic | 40.0% | |
| TTCCTTGAACAAAGACTCAG+TGG | - | chr6_3:26646104-26646123 | Msa0946230:five_prime_UTR | 40.0% | |
| AACCACTGAGTCTTTGTTCA+AGG | + | chr6_3:26646109-26646128 | None:intergenic | 40.0% | |
| TGTGATGAGGTGGTGACTAT+TGG | + | chr6_3:26642646-26642665 | None:intergenic | 45.0% | |
| GATTCCTCCATCACCCATTA+AGG | - | chr6_3:26643010-26643029 | Msa0946230:CDS | 45.0% | |
| ! | TGTTCCTTAATGGGTGATGG+AGG | + | chr6_3:26643017-26643036 | None:intergenic | 45.0% |
| ! | AAGTTGGTCGTTGACCTTGA+AGG | + | chr6_3:26643068-26643087 | None:intergenic | 45.0% |
| TCAACGGTGGTAAGCATTTC+TGG | - | chr6_3:26644797-26644816 | Msa0946230:intron | 45.0% | |
| !! | CAACGTAGGGTGTTTTGTGA+AGG | + | chr6_3:26645168-26645187 | None:intergenic | 45.0% |
| CTTCACAAAACACCCTACGT+TGG | - | chr6_3:26645166-26645185 | Msa0946230:intron | 45.0% | |
| CACGGTTATGTTTCCAACGT+AGG | + | chr6_3:26645182-26645201 | None:intergenic | 45.0% | |
| ! | TCCCAAAAGCATGGTGAACT+GGG | + | chr6_3:26645667-26645686 | None:intergenic | 45.0% |
| GCGATAAGGAGTTGAGTTTG+AGG | + | chr6_3:26645870-26645889 | None:intergenic | 45.0% | |
| AACTCAACTCCTTATCGCTC+GGG | - | chr6_3:26645872-26645891 | Msa0946230:CDS | 45.0% | |
| CTACGACACGAAGTCAAACT+CGG | + | chr6_3:26645983-26646002 | None:intergenic | 45.0% | |
| !! | CGTGTCGTAGCTTTAGAGAA+AGG | - | chr6_3:26645993-26646012 | Msa0946230:five_prime_UTR | 45.0% |
| !! | GTCGTAGCTTTAGAGAAAGG+AGG | - | chr6_3:26645996-26646015 | Msa0946230:five_prime_UTR | 45.0% |
| !! | GTAGCTTTAGAGAAAGGAGG+AGG | - | chr6_3:26645999-26646018 | Msa0946230:five_prime_UTR | 45.0% |
| AGTCCTGCAATTGCAGTAGA+TGG | - | chr6_3:26646028-26646047 | Msa0946230:five_prime_UTR | 45.0% | |
| TAGACACTCCTCGTATGTCC+CGG | - | chr6_3:26644477-26644496 | Msa0946230:intron | 50.0% | |
| GTCAGTGTCCATATCGTGTC+TGG | - | chr6_3:26644587-26644606 | Msa0946230:intron | 50.0% | |
| TACGGACACCAGACACGATA+TGG | + | chr6_3:26644598-26644617 | None:intergenic | 50.0% | |
| TTGGAAACATAACCGTGCGC+AGG | - | chr6_3:26645185-26645204 | Msa0946230:intron | 50.0% | |
| ! | TCAAGTTTTGCACCTGCGCA+CGG | + | chr6_3:26645200-26645219 | None:intergenic | 50.0% |
| CGCAGGTGCAAAACTTGACA+CGG | - | chr6_3:26645202-26645221 | Msa0946230:intron | 50.0% | |
| GCAGACTTTACACCATCTCG+TGG | - | chr6_3:26645635-26645654 | Msa0946230:intron | 50.0% | |
| ! | ACCCCAGTTCACCATGCTTT+TGG | - | chr6_3:26645662-26645681 | Msa0946230:intron | 50.0% |
| ! | CCCAAAAGCATGGTGAACTG+GGG | + | chr6_3:26645666-26645685 | None:intergenic | 50.0% |
| ! | CCCCAGTTCACCATGCTTTT+GGG | - | chr6_3:26645663-26645682 | Msa0946230:intron | 50.0% |
| ! | GTCCCAAAAGCATGGTGAAC+TGG | + | chr6_3:26645668-26645687 | None:intergenic | 50.0% |
| !! | GAAGAGGCTTTGTTCAGACC+AGG | + | chr6_3:26645692-26645711 | None:intergenic | 50.0% |
| ! | GGTGATGATTCGGATCGAGA+AGG | + | chr6_3:26645731-26645750 | None:intergenic | 50.0% |
| AGCACGGACAGTCCCAGATT+AGG | - | chr6_3:26643887-26643906 | Msa0946230:intron | 55.0% | |
| !! | TGTTGGTGTCGGGTCAGTGT+CGG | + | chr6_3:26643942-26643961 | None:intergenic | 55.0% |
| GTCAGTGTCCGTGTCGTGTT+CGG | - | chr6_3:26644018-26644037 | Msa0946230:intron | 55.0% | |
| TACGGACACCGAACACGACA+CGG | + | chr6_3:26644029-26644048 | None:intergenic | 55.0% | |
| ACACGACACATGTCCGACAC+CGG | + | chr6_3:26644499-26644518 | None:intergenic | 55.0% | |
| ! | ACTGGGGTGTTACCACGAGA+TGG | + | chr6_3:26645650-26645669 | None:intergenic | 55.0% |
| !!! | CACCATGCTTTTGGGACACC+TGG | - | chr6_3:26645671-26645690 | Msa0946230:intron | 55.0% |
| GACCAGGTGTCCCAAAAGCA+TGG | + | chr6_3:26645676-26645695 | None:intergenic | 55.0% | |
| GTCCCAGATTAGGCGTGTCC+CGG | - | chr6_3:26643897-26643916 | Msa0946230:intron | 60.0% | |
| CACCGGGACACGCCTAATCT+GGG | + | chr6_3:26643902-26643921 | None:intergenic | 60.0% | |
| ACACCGGGACACGCCTAATC+TGG | + | chr6_3:26643903-26643922 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr6_3:26643903-26643922 | Msa0946230:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr6_3:26643919-26643938 | None:intergenic | 60.0% | |
| CTCCTCGTATGTCCCGGTGT+CGG | - | chr6_3:26644483-26644502 | Msa0946230:intron | 60.0% | |
| CACGACACATGTCCGACACC+GGG | + | chr6_3:26644498-26644517 | None:intergenic | 60.0% | |
| GAGTTAGCGCCCGAGCGATA+AGG | + | chr6_3:26645884-26645903 | None:intergenic | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr6_3:26643918-26643937 | None:intergenic | 65.0% | |
| GTCCGACACCGGGACATACG+AGG | + | chr6_3:26644488-26644507 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 26642606 | 26646269 | 26642606 | ID=Msa0946230;Name=Msa0946230 |
| chr6_3 | mRNA | 26642606 | 26646269 | 26642606 | ID=Msa0946230-mRNA-1;Parent=Msa0946230;Name=Msa0946230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=303|1|1|1|1|1|3|209|230 |
| chr6_3 | exon | 26642606 | 26643236 | 26642606 | ID=Msa0946230-mRNA-1:exon:7375;Parent=Msa0946230-mRNA-1 |
| chr6_3 | exon | 26644070 | 26644150 | 26644070 | ID=Msa0946230-mRNA-1:exon:7374;Parent=Msa0946230-mRNA-1 |
| chr6_3 | exon | 26645777 | 26646269 | 26645777 | ID=Msa0946230-mRNA-1:exon:7373;Parent=Msa0946230-mRNA-1 |
| chr6_3 | five_prime_UTR | 26645967 | 26646269 | 26645967 | ID=Msa0946230-mRNA-1:five_prime_utr;Parent=Msa0946230-mRNA-1 |
| chr6_3 | CDS | 26645777 | 26645966 | 26645777 | ID=Msa0946230-mRNA-1:cds;Parent=Msa0946230-mRNA-1 |
| chr6_3 | CDS | 26644070 | 26644150 | 26644070 | ID=Msa0946230-mRNA-1:cds;Parent=Msa0946230-mRNA-1 |
| chr6_3 | CDS | 26642815 | 26643236 | 26642815 | ID=Msa0946230-mRNA-1:cds;Parent=Msa0946230-mRNA-1 |
| chr6_3 | three_prime_UTR | 26642606 | 26642814 | 26642606 | ID=Msa0946230-mRNA-1:three_prime_utr;Parent=Msa0946230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
