Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979450 | XP_003618830.1 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 2.77e-140 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979450 | sp|Q9LK32|Y3721_ARATH | 39.766 | 171 | 73 | 6 | 67 | 226 | 82 | 233 | 1.82e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979450 | G7KNM5 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 1.32e-140 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0264270 | Msa0979450 | 0.801032 | 1.090097e-48 | -8.615850e-47 |
| Msa0946230 | Msa0979450 | 0.936816 | 9.477724e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979450 | MtrunA17_Chr6g0459241 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 2.54e-144 | 402 |
| Msa0979450 | MtrunA17_Chr7g0225841 | 54.618 | 249 | 70 | 13 | 1 | 230 | 1 | 225 | 4.59e-69 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979450 | AT3G01860.1 | 36.585 | 164 | 86 | 4 | 62 | 218 | 58 | 210 | 2.00e-23 | 94.4 |
| Msa0979450 | AT3G01860.2 | 35.948 | 153 | 85 | 2 | 70 | 218 | 3 | 146 | 4.21e-23 | 92.0 |
| Msa0979450 | AT3G27210.1 | 39.766 | 171 | 73 | 6 | 67 | 226 | 82 | 233 | 1.85e-19 | 84.0 |
| Msa0979450 | AT5G40860.1 | 43.902 | 82 | 44 | 2 | 67 | 146 | 91 | 172 | 1.40e-11 | 62.8 |
Find 57 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAATATATACTCTTAT+TGG | 0.142077 | 6_4:+16617693 | None:intergenic |
| ACGACCAACTTCAATGATTT+TGG | 0.167636 | 6_4:-16617235 | Msa0979450:intron |
| AATCACAAGTTTCTCAGTTT+TGG | 0.220423 | 6_4:+16617321 | None:intergenic |
| ACCCCAGTTCACCATGCTTT+TGG | 0.230967 | 6_4:-16614363 | Msa0979450:CDS |
| TTTCAAATTCATATAGCTTA+TGG | 0.244345 | 6_4:+16613853 | None:intergenic |
| GATTCCTCCATCACCCATTA+AGG | 0.264914 | 6_4:-16617302 | Msa0979450:CDS |
| ATGCAAAACAGCGACGATTT+AGG | 0.307424 | 6_4:+16614069 | None:intergenic |
| TTGTGAGAAAATTGAGGAAT+TGG | 0.337673 | 6_4:+16617574 | None:intergenic |
| GGAGTTGAGTTTGAGGATTT+AGG | 0.339451 | 6_4:+16614165 | None:intergenic |
| TGTGATGAGGTGGTGACTAT+TGG | 0.342975 | 6_4:+16617669 | None:intergenic |
| TTTCTTTACCATCATCATCT+TGG | 0.344411 | 6_4:+16614223 | None:intergenic |
| TTTCCATCTACTGCAATTGC+AGG | 0.345837 | 6_4:+16613994 | None:intergenic |
| TTGAAACAATGTTGTTTGTT+TGG | 0.350400 | 6_4:-16613948 | Msa0979450:three_prime_UTR |
| GTCCCAAAAGCATGGTGAAC+TGG | 0.354754 | 6_4:+16614360 | None:intergenic |
| AACCACTGAGTCTTTGTTCA+AGG | 0.378910 | 6_4:+16613919 | None:intergenic |
| GCTAAATATATACTCTTATT+GGG | 0.380283 | 6_4:+16617694 | None:intergenic |
| ATCTGAGTCTATCCAAGCTT+TGG | 0.382558 | 6_4:+16615549 | None:intergenic |
| TTTCTTATCTGGTGATGATT+CGG | 0.386046 | 6_4:+16614287 | None:intergenic |
| AGGATTTAGGTAAAACATCT+TGG | 0.389572 | 6_4:+16614178 | None:intergenic |
| TAGCTTATGGTTCTTTACAT+AGG | 0.408926 | 6_4:+16613866 | None:intergenic |
| AGTCCTGCAATTGCAGTAGA+TGG | 0.422272 | 6_4:-16613997 | Msa0979450:CDS |
| GAAAAGTATGTAAACATAAA+CGG | 0.431483 | 6_4:-16613834 | Msa0979450:three_prime_UTR |
| AGCTTATGGTTCTTTACATA+GGG | 0.448109 | 6_4:+16613867 | None:intergenic |
| AAAGAGGATTGGTCTTGAAA+AGG | 0.465992 | 6_4:+16617619 | None:intergenic |
| GCGATAAGGAGTTGAGTTTG+AGG | 0.466343 | 6_4:+16614158 | None:intergenic |
| GAGTTAGCGCCCGAGCGATA+AGG | 0.471410 | 6_4:+16614144 | None:intergenic |
| GATTGTTCCTTAATGGGTGA+TGG | 0.472075 | 6_4:+16617295 | None:intergenic |
| GGTAAAACATCTTGGATGGT+TGG | 0.477445 | 6_4:+16614186 | None:intergenic |
| ACTTGAAGTTATCACCTTCA+AGG | 0.485005 | 6_4:-16617261 | Msa0979450:CDS |
| CGTGTCGTAGCTTTAGAGAA+AGG | 0.488970 | 6_4:-16614032 | Msa0979450:CDS |
| AACTCAACTCCTTATCGCTC+GGG | 0.501294 | 6_4:-16614153 | Msa0979450:CDS |
| AAGGGTTTGTGAGAAAATTG+AGG | 0.514702 | 6_4:+16617568 | None:intergenic |
| TCCCAAAAGCATGGTGAACT+GGG | 0.517212 | 6_4:+16614361 | None:intergenic |
| TTTAGGTAAAACATCTTGGA+TGG | 0.517665 | 6_4:+16614182 | None:intergenic |
| AAACTCAACTCCTTATCGCT+CGG | 0.528053 | 6_4:-16614154 | Msa0979450:CDS |
| AGGAATTGGAGAGAGAAAGA+AGG | 0.529639 | 6_4:+16617588 | None:intergenic |
| TGAAGTTCTGTTCTGAGAAG+AGG | 0.532716 | 6_4:+16614320 | None:intergenic |
| CATACCAAAATCATTGAAGT+TGG | 0.547950 | 6_4:+16617231 | None:intergenic |
| CTACGACACGAAGTCAAACT+CGG | 0.549226 | 6_4:+16614045 | None:intergenic |
| GATGATTTCTATAGTGTCAA+TGG | 0.554914 | 6_4:-16615520 | Msa0979450:CDS |
| AAAGACAACCAAGATGATGA+TGG | 0.570346 | 6_4:-16614231 | Msa0979450:CDS |
| AAGTTGGTCGTTGACCTTGA+AGG | 0.585987 | 6_4:+16617247 | None:intergenic |
| CACCAGGTGTCCCAAAAGCA+TGG | 0.588889 | 6_4:+16614352 | None:intergenic |
| TGTTCCTTAATGGGTGATGG+AGG | 0.590309 | 6_4:+16617298 | None:intergenic |
| GAAGAGGCTTTGTTCACACC+AGG | 0.594184 | 6_4:+16614336 | None:intergenic |
| CACATTGCAGTAGAACTCAA+AGG | 0.601804 | 6_4:+16613971 | None:intergenic |
| GTAGCTTTAGAGAAAGGAGG+AGG | 0.614404 | 6_4:-16614026 | Msa0979450:CDS |
| TTCCTTGAACAAAGACTCAG+TGG | 0.622094 | 6_4:-16613921 | Msa0979450:three_prime_UTR |
| CAATGTTGTTTGTGATGAGG+TGG | 0.626115 | 6_4:+16617659 | None:intergenic |
| GGTGATGATTCGGATCGAGA+AGG | 0.629628 | 6_4:+16614297 | None:intergenic |
| CAACAATGTTGTTTGTGATG+AGG | 0.639166 | 6_4:+16617656 | None:intergenic |
| GTCGTAGCTTTAGAGAAAGG+AGG | 0.648382 | 6_4:-16614029 | Msa0979450:CDS |
| GCAGACTTTACACCATCTCG+TGG | 0.665071 | 6_4:-16614390 | Msa0979450:intron |
| CAGTGAAAGAATCACAAGTG+AGG | 0.673772 | 6_4:-16614112 | Msa0979450:CDS |
| GATTTCTATAGTGTCAATGG+TGG | 0.688722 | 6_4:-16615517 | Msa0979450:intron |
| ACTGGGGTGTTACCACGAGA+TGG | 0.693109 | 6_4:+16614378 | None:intergenic |
| CCCAAAAGCATGGTGAACTG+GGG | 0.715512 | 6_4:+16614362 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTTATTTTTAA+AGG | - | chr6_4:16616694-16616713 | Msa0979450:intron | 0.0% |
| !!! | TTAATAAATGATTTGTTTTT+TGG | - | chr6_4:16614437-16614456 | Msa0979450:intron | 10.0% |
| !!! | TTATCATCTTTTTGATTAAT+GGG | - | chr6_4:16614063-16614082 | Msa0979450:CDS | 15.0% |
| !!! | GGTTTTTTTTTTTTTTTTGT+TGG | - | chr6_4:16614315-16614334 | Msa0979450:CDS | 15.0% |
| !! | AATTATTAAAAACATGAAAC+TGG | + | chr6_4:16614975-16614994 | None:intergenic | 15.0% |
| !! | AGAAAAGAAAAAGAAAAAAA+AGG | + | chr6_4:16615256-16615275 | None:intergenic | 15.0% |
| !!! | TTTATTTCTGATTAATTAGT+TGG | - | chr6_4:16615491-16615510 | Msa0979450:intron | 15.0% |
| !! | ATTTATCAATAATTCATTAG+GGG | + | chr6_4:16615602-16615621 | None:intergenic | 15.0% |
| !! | CATTTATCAATAATTCATTA+GGG | + | chr6_4:16615603-16615622 | None:intergenic | 15.0% |
| !!! | TGATTTTCTTAAATTATTAG+CGG | - | chr6_4:16615738-16615757 | Msa0979450:intron | 15.0% |
| !! | CTTATTAAACTCTAATTATA+TGG | - | chr6_4:16616853-16616872 | Msa0979450:intron | 15.0% |
| !! | GCTAAATATATACTCTTATT+GGG | + | chr6_4:16613793-16613812 | None:intergenic | 20.0% |
| !! | TGCTAAATATATACTCTTAT+TGG | + | chr6_4:16613794-16613813 | None:intergenic | 20.0% |
| !! | AAAATGAAGAATGAGAAAAA+GGG | + | chr6_4:16613967-16613986 | None:intergenic | 20.0% |
| !! | AAAAATGAAGAATGAGAAAA+AGG | + | chr6_4:16613968-16613987 | None:intergenic | 20.0% |
| !!! | GTTATCATCTTTTTGATTAA+TGG | - | chr6_4:16614062-16614081 | Msa0979450:CDS | 20.0% |
| !!! | TTTTTAGATTGTTCCTTAAT+GGG | + | chr6_4:16614198-16614217 | None:intergenic | 20.0% |
| !!! | ATTTTTAGATTGTTCCTTAA+TGG | + | chr6_4:16614199-16614218 | None:intergenic | 20.0% |
| !! | ATTAAGGAACAATCTAAAAA+TGG | - | chr6_4:16614198-16614217 | Msa0979450:CDS | 20.0% |
| !! | TTAAGGAACAATCTAAAAAT+GGG | - | chr6_4:16614199-16614218 | Msa0979450:CDS | 20.0% |
| !! | TTATAGCTTCAACAAAATTA+CGG | + | chr6_4:16614675-16614694 | None:intergenic | 20.0% |
| !! | TTTGTTAATCATGTTTGTTT+AGG | - | chr6_4:16614783-16614802 | Msa0979450:intron | 20.0% |
| !! | ATATTAATTCACCTATGATT+AGG | - | chr6_4:16614845-16614864 | Msa0979450:intron | 20.0% |
| !! | ATGATAAATTTCTACTTGTT+TGG | + | chr6_4:16614910-16614929 | None:intergenic | 20.0% |
| !!! | TTTATGTTGTATTTAAAGCA+CGG | - | chr6_4:16615056-16615075 | Msa0979450:intron | 20.0% |
| !! | TGTATGTATGAATATGAAAA+TGG | - | chr6_4:16615276-16615295 | Msa0979450:intron | 20.0% |
| !! | CAACAAATTAATCAGAATTA+AGG | + | chr6_4:16615419-16615438 | None:intergenic | 20.0% |
| !!! | CTTAATTCTGATTAATTTGT+TGG | - | chr6_4:16615417-16615436 | Msa0979450:intron | 20.0% |
| !! | CAAAATTCAAAACAAACAAA+AGG | + | chr6_4:16615558-16615577 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTGTTTTGAATTT+TGG | - | chr6_4:16615556-16615575 | Msa0979450:CDS | 20.0% |
| !! | CCATTTATCAATAATTCATT+AGG | + | chr6_4:16615604-16615623 | None:intergenic | 20.0% |
| !! | CCTAATGAATTATTGATAAA+TGG | - | chr6_4:16615601-16615620 | Msa0979450:intron | 20.0% |
| !!! | TTTTTTTCTTCTTTCTGTAT+AGG | - | chr6_4:16615886-16615905 | Msa0979450:intron | 20.0% |
| !!! | TTATGATTTTTTTTTACCAG+AGG | - | chr6_4:16616014-16616033 | Msa0979450:intron | 20.0% |
| !!! | ATTACCCTTATTTATTATTG+TGG | - | chr6_4:16616522-16616541 | Msa0979450:intron | 20.0% |
| !! | AATGGGATATTAAGTAAATA+AGG | - | chr6_4:16616561-16616580 | Msa0979450:intron | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | - | chr6_4:16616658-16616677 | Msa0979450:intron | 20.0% |
| !!! | ATTTTCAAAGAGATTTTCAT+TGG | + | chr6_4:16616758-16616777 | None:intergenic | 20.0% |
| !! | GATATTATGACATAGAAAAA+TGG | - | chr6_4:16616779-16616798 | Msa0979450:intron | 20.0% |
| !! | CTCTAATTATATGGATTTAA+AGG | - | chr6_4:16616862-16616881 | Msa0979450:intron | 20.0% |
| !! | TTTCAAATTCATATAGCTTA+TGG | + | chr6_4:16617634-16617653 | None:intergenic | 20.0% |
| !!! | GAAAAGTATGTAAACATAAA+CGG | - | chr6_4:16617650-16617669 | Msa0979450:five_prime_UTR | 20.0% |
| !!! | AAAGAAGGAAAGTTTTAAAG+AGG | + | chr6_4:16613884-16613903 | None:intergenic | 25.0% |
| !!! | GTTTTTGGAATTATGCAAAA+GGG | + | chr6_4:16613937-16613956 | None:intergenic | 25.0% |
| !!! | AGTTTTTGGAATTATGCAAA+AGG | + | chr6_4:16613938-16613957 | None:intergenic | 25.0% |
| !!! | GTTATTGTTTTCTTTGTTGT+TGG | + | chr6_4:16614115-16614134 | None:intergenic | 25.0% |
| !!! | AAGCTAAAAGTTGCATTTTT+TGG | - | chr6_4:16614138-16614157 | Msa0979450:CDS | 25.0% |
| ! | TAAGGAACAATCTAAAAATG+GGG | - | chr6_4:16614200-16614219 | Msa0979450:CDS | 25.0% |
| !!! | GTTGTTGTTTTGATCTTTTA+AGG | - | chr6_4:16614294-16614313 | Msa0979450:CDS | 25.0% |
| !!! | AGGTTGTTTTTTTCTTTTTC+TGG | - | chr6_4:16614349-16614368 | Msa0979450:CDS | 25.0% |
| !!! | GGTTGTTTTTTTCTTTTTCT+GGG | - | chr6_4:16614350-16614369 | Msa0979450:CDS | 25.0% |
| !! | TTTGATCTAAGTTGTTATTG+TGG | - | chr6_4:16614475-16614494 | Msa0979450:intron | 25.0% |
| !! | TTGATCTAAGTTGTTATTGT+GGG | - | chr6_4:16614476-16614495 | Msa0979450:intron | 25.0% |
| !! | GTAATTTTGTTGAAGCTATA+AGG | - | chr6_4:16614674-16614693 | Msa0979450:intron | 25.0% |
| ! | AACCATTATAACCTAATCAT+AGG | + | chr6_4:16614859-16614878 | None:intergenic | 25.0% |
| ! | ACAAGTAGAAATTTATCATG+TGG | - | chr6_4:16614911-16614930 | Msa0979450:intron | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+TGG | + | chr6_4:16615144-16615163 | None:intergenic | 25.0% |
| ! | AAATTAATGAAGCATGGATA+CGG | + | chr6_4:16615232-16615251 | None:intergenic | 25.0% |
| ! | AAAGGTAAATTAATGAAGCA+TGG | + | chr6_4:16615238-16615257 | None:intergenic | 25.0% |
| !!! | CACTTTCATTTTAATGTCAA+CGG | + | chr6_4:16615359-16615378 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr6_4:16615713-16615732 | None:intergenic | 25.0% |
| !! | GTTTGAAATGTTACAAGAAA+TGG | + | chr6_4:16615839-16615858 | None:intergenic | 25.0% |
| !! | TATAATTTCAGCATCGAAAA+CGG | + | chr6_4:16616060-16616079 | None:intergenic | 25.0% |
| ! | TTGAAGAAAAACAATAGTAC+AGG | - | chr6_4:16616112-16616131 | Msa0979450:intron | 25.0% |
| ! | ATAACGTCAATTTATGAAGA+AGG | - | chr6_4:16616190-16616209 | Msa0979450:intron | 25.0% |
| ! | ATGTAAAGTGACACTTAAAT+AGG | + | chr6_4:16616468-16616487 | None:intergenic | 25.0% |
| ! | CTCTCCACAATAATAAATAA+GGG | + | chr6_4:16616529-16616548 | None:intergenic | 25.0% |
| ! | TCTCTCCACAATAATAAATA+AGG | + | chr6_4:16616530-16616549 | None:intergenic | 25.0% |
| ! | GAGAGAGAAATATATGTAAT+GGG | - | chr6_4:16616544-16616563 | Msa0979450:intron | 25.0% |
| !! | GCAATATTTATTGATTGTCT+TGG | - | chr6_4:16616622-16616641 | Msa0979450:intron | 25.0% |
| ! | ATGTGACAATTAAAAAGGAA+CGG | - | chr6_4:16616663-16616682 | Msa0979450:intron | 25.0% |
| ! | ATATACACAATCAGCATAAA+CGG | - | chr6_4:16616885-16616904 | Msa0979450:intron | 25.0% |
| !!! | TTCTGAAATGAAAGAAATGA+AGG | - | chr6_4:16616989-16617008 | Msa0979450:intron | 25.0% |
| ! | ATTAGAGTTTAATGCACATT+CGG | + | chr6_4:16617052-16617071 | None:intergenic | 25.0% |
| !! | AACAGTTTCTTTTTCTTATC+TGG | + | chr6_4:16617211-16617230 | None:intergenic | 25.0% |
| !! | TTGAAACAATGTTGTTTGTT+TGG | - | chr6_4:16617536-16617555 | Msa0979450:five_prime_UTR | 25.0% |
| !!! | AGGAAAGTTTTAAAGAGGAT+TGG | + | chr6_4:16613879-16613898 | None:intergenic | 30.0% |
| TTGTGAGAAAATTGAGGAAT+TGG | + | chr6_4:16613913-16613932 | None:intergenic | 30.0% | |
| ! | AATCACAAGTTTCTCAGTTT+TGG | + | chr6_4:16614166-16614185 | None:intergenic | 30.0% |
| CATACCAAAATCATTGAAGT+TGG | + | chr6_4:16614256-16614275 | None:intergenic | 30.0% | |
| !! | CAACTTCAATGATTTTGGTA+TGG | - | chr6_4:16614254-16614273 | Msa0979450:CDS | 30.0% |
| CAACAACAAGAACAAACAAA+AGG | + | chr6_4:16614281-16614300 | None:intergenic | 30.0% | |
| ! | TTTTGTTGGAACACTTTCTT+AGG | - | chr6_4:16614329-16614348 | Msa0979450:CDS | 30.0% |
| ! | TGATCTAAGTTGTTATTGTG+GGG | - | chr6_4:16614477-16614496 | Msa0979450:intron | 30.0% |
| ! | TGATGTTATTTGTGCGTATT+TGG | - | chr6_4:16614617-16614636 | Msa0979450:intron | 30.0% |
| AAGTGAGTTTGACAGAATTA+CGG | + | chr6_4:16614707-16614726 | None:intergenic | 30.0% | |
| ! | ATGTTTGTTTAGGATTGACA+TGG | - | chr6_4:16614793-16614812 | Msa0979450:intron | 30.0% |
| CACCTATGATTAGGTTATAA+TGG | - | chr6_4:16614854-16614873 | Msa0979450:intron | 30.0% | |
| TCTTAAATTATTAGCGGTGT+CGG | - | chr6_4:16615744-16615763 | Msa0979450:intron | 30.0% | |
| !!! | CATTTTTTGATTCCAAAGCT+TGG | - | chr6_4:16615923-16615942 | Msa0979450:intron | 30.0% |
| GATGATTTCTATAGTGTCAA+TGG | - | chr6_4:16615964-16615983 | Msa0979450:intron | 30.0% | |
| TTGAACAAATTTGAATCCTC+TGG | + | chr6_4:16616033-16616052 | None:intergenic | 30.0% | |
| CATAAATTGACGTTATGAAG+AGG | + | chr6_4:16616186-16616205 | None:intergenic | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | + | chr6_4:16616427-16616446 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTAAGTGTCACTTT+TGG | - | chr6_4:16616428-16616447 | Msa0979450:intron | 30.0% |
| TCCAAAAGTGACACTTAAAA+AGG | + | chr6_4:16616432-16616451 | None:intergenic | 30.0% | |
| GGAGAGAGAAATATATGTAA+TGG | - | chr6_4:16616543-16616562 | Msa0979450:intron | 30.0% | |
| AGTATAAAGTAAGTTTACCC+TGG | - | chr6_4:16616729-16616748 | Msa0979450:intron | 30.0% | |
| ! | TTTCTTATCTGGTGATGATT+CGG | + | chr6_4:16617200-16617219 | None:intergenic | 30.0% |
| TTTCTTTACCATCATCATCT+TGG | + | chr6_4:16617264-16617283 | None:intergenic | 30.0% | |
| TTTAGGTAAAACATCTTGGA+TGG | + | chr6_4:16617305-16617324 | None:intergenic | 30.0% | |
| AGGATTTAGGTAAAACATCT+TGG | + | chr6_4:16617309-16617328 | None:intergenic | 30.0% | |
| AGCTTATGGTTCTTTACATA+GGG | + | chr6_4:16617620-16617639 | None:intergenic | 30.0% | |
| TAGCTTATGGTTCTTTACAT+AGG | + | chr6_4:16617621-16617640 | None:intergenic | 30.0% | |
| ! | CAACAATGTTGTTTGTGATG+AGG | + | chr6_4:16613831-16613850 | None:intergenic | 35.0% |
| !! | AAAGAGGATTGGTCTTGAAA+AGG | + | chr6_4:16613868-16613887 | None:intergenic | 35.0% |
| AAGGGTTTGTGAGAAAATTG+AGG | + | chr6_4:16613919-16613938 | None:intergenic | 35.0% | |
| !! | AAAAAGGGTGTGTGAGTTTT+TGG | + | chr6_4:16613952-16613971 | None:intergenic | 35.0% |
| ACTTGAAGTTATCACCTTCA+AGG | - | chr6_4:16614223-16614242 | Msa0979450:CDS | 35.0% | |
| ! | ACGACCAACTTCAATGATTT+TGG | - | chr6_4:16614249-16614268 | Msa0979450:CDS | 35.0% |
| !!! | ACTGTTTCTGCTTTTATGTG+AGG | - | chr6_4:16614753-16614772 | Msa0979450:intron | 35.0% |
| GCACATGTGAATATGAAGAT+TGG | - | chr6_4:16615009-16615028 | Msa0979450:intron | 35.0% | |
| TGATTTATATCCAGATGCAG+AGG | - | chr6_4:16615303-16615322 | Msa0979450:intron | 35.0% | |
| GATTTATATCCAGATGCAGA+GGG | - | chr6_4:16615304-16615323 | Msa0979450:intron | 35.0% | |
| TCCTACTTAATTGAACTGAG+AGG | - | chr6_4:16615393-16615412 | Msa0979450:intron | 35.0% | |
| CAAAAGTAAAGCTGTCAGTA+TGG | + | chr6_4:16615444-16615463 | None:intergenic | 35.0% | |
| ! | GTAATTATATGTGTCGGTGT+CGG | + | chr6_4:16615707-16615726 | None:intergenic | 35.0% |
| TGATAGACACAAACTCTATG+AGG | + | chr6_4:16615816-16615835 | None:intergenic | 35.0% | |
| GATTTCTATAGTGTCAATGG+TGG | - | chr6_4:16615967-16615986 | Msa0979450:intron | 35.0% | |
| TACAATGTCGGTACAGAAAA+CGG | + | chr6_4:16616152-16616171 | None:intergenic | 35.0% | |
| GCTTGAGAATGATACAATGT+CGG | + | chr6_4:16616164-16616183 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | - | chr6_4:16616666-16616685 | Msa0979450:intron | 35.0% | |
| ! | GTTTTACACTGATACTCGAT+AGG | + | chr6_4:16616811-16616830 | None:intergenic | 35.0% |
| GTTGCAAAAGAAATGTGTTG+TGG | + | chr6_4:16616949-16616968 | None:intergenic | 35.0% | |
| AAAGACAACCAAGATGATGA+TGG | - | chr6_4:16617253-16617272 | Msa0979450:CDS | 35.0% | |
| ! | CAATGTTGTTTGTGATGAGG+TGG | + | chr6_4:16613828-16613847 | None:intergenic | 40.0% |
| AGGAATTGGAGAGAGAAAGA+AGG | + | chr6_4:16613899-16613918 | None:intergenic | 40.0% | |
| ! | GATTGTTCCTTAATGGGTGA+TGG | + | chr6_4:16614192-16614211 | None:intergenic | 40.0% |
| TTGTGGGGTCTCTTAATATG+AGG | - | chr6_4:16614492-16614511 | Msa0979450:intron | 40.0% | |
| CACATCATATCAGCAAAGAC+AGG | + | chr6_4:16614943-16614962 | None:intergenic | 40.0% | |
| CTGTCTTTGCTGATATGATG+TGG | - | chr6_4:16614941-16614960 | Msa0979450:intron | 40.0% | |
| CTTTGCTGATATGATGTGGT+TGG | - | chr6_4:16614945-16614964 | Msa0979450:intron | 40.0% | |
| TTTAATAGACCCTCTGCATC+TGG | + | chr6_4:16615316-16615335 | None:intergenic | 40.0% | |
| GCCTCTCAGTTCAATTAAGT+AGG | + | chr6_4:16615397-16615416 | None:intergenic | 40.0% | |
| ATGAGGCACGTATACGTATA+CGG | + | chr6_4:16615799-16615818 | None:intergenic | 40.0% | |
| ATCTGAGTCTATCCAAGCTT+TGG | + | chr6_4:16615938-16615957 | None:intergenic | 40.0% | |
| TCAATGGTGGTAAGCATTTC+TGG | - | chr6_4:16615980-16615999 | Msa0979450:intron | 40.0% | |
| ACGGTTATGTTTCCAACGTA+GGG | + | chr6_4:16616364-16616383 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | + | chr6_4:16616423-16616442 | None:intergenic | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | + | chr6_4:16616424-16616443 | None:intergenic | 40.0% | |
| ! | GAGATTTTCATTGGAAGCCA+GGG | + | chr6_4:16616749-16616768 | None:intergenic | 40.0% |
| ! | AGAGATTTTCATTGGAAGCC+AGG | + | chr6_4:16616750-16616769 | None:intergenic | 40.0% |
| !! | TGAAGTTCTGTTCTGAGAAG+AGG | + | chr6_4:16617167-16617186 | None:intergenic | 40.0% |
| GGTAAAACATCTTGGATGGT+TGG | + | chr6_4:16617301-16617320 | None:intergenic | 40.0% | |
| GGAGTTGAGTTTGAGGATTT+AGG | + | chr6_4:16617322-16617341 | None:intergenic | 40.0% | |
| AAACTCAACTCCTTATCGCT+CGG | - | chr6_4:16617330-16617349 | Msa0979450:CDS | 40.0% | |
| CAGTGAAAGAATCACAAGTG+AGG | - | chr6_4:16617372-16617391 | Msa0979450:CDS | 40.0% | |
| ATGCAAAACAGCGACGATTT+AGG | + | chr6_4:16617418-16617437 | None:intergenic | 40.0% | |
| TTTCCATCTACTGCAATTGC+AGG | + | chr6_4:16617493-16617512 | None:intergenic | 40.0% | |
| CACATTGCAGTAGAACTCAA+AGG | + | chr6_4:16617516-16617535 | None:intergenic | 40.0% | |
| TTCCTTGAACAAAGACTCAG+TGG | - | chr6_4:16617563-16617582 | Msa0979450:five_prime_UTR | 40.0% | |
| AACCACTGAGTCTTTGTTCA+AGG | + | chr6_4:16617568-16617587 | None:intergenic | 40.0% | |
| TGTGATGAGGTGGTGACTAT+TGG | + | chr6_4:16613818-16613837 | None:intergenic | 45.0% | |
| GATTCCTCCATCACCCATTA+AGG | - | chr6_4:16614182-16614201 | Msa0979450:CDS | 45.0% | |
| ! | TGTTCCTTAATGGGTGATGG+AGG | + | chr6_4:16614189-16614208 | None:intergenic | 45.0% |
| ! | AAGTTGGTCGTTGACCTTGA+AGG | + | chr6_4:16614240-16614259 | None:intergenic | 45.0% |
| !! | CAACGTAGGGTGTTTTGTGA+AGG | + | chr6_4:16616351-16616370 | None:intergenic | 45.0% |
| CTTCACAAAACACCCTACGT+TGG | - | chr6_4:16616349-16616368 | Msa0979450:intron | 45.0% | |
| CACGGTTATGTTTCCAACGT+AGG | + | chr6_4:16616365-16616384 | None:intergenic | 45.0% | |
| ! | TCCCAAAAGCATGGTGAACT+GGG | + | chr6_4:16617126-16617145 | None:intergenic | 45.0% |
| GCGATAAGGAGTTGAGTTTG+AGG | + | chr6_4:16617329-16617348 | None:intergenic | 45.0% | |
| AACTCAACTCCTTATCGCTC+GGG | - | chr6_4:16617331-16617350 | Msa0979450:CDS | 45.0% | |
| CTACGACACGAAGTCAAACT+CGG | + | chr6_4:16617442-16617461 | None:intergenic | 45.0% | |
| !! | CGTGTCGTAGCTTTAGAGAA+AGG | - | chr6_4:16617452-16617471 | Msa0979450:five_prime_UTR | 45.0% |
| !! | GTCGTAGCTTTAGAGAAAGG+AGG | - | chr6_4:16617455-16617474 | Msa0979450:five_prime_UTR | 45.0% |
| !! | GTAGCTTTAGAGAAAGGAGG+AGG | - | chr6_4:16617458-16617477 | Msa0979450:five_prime_UTR | 45.0% |
| AGTCCTGCAATTGCAGTAGA+TGG | - | chr6_4:16617487-16617506 | Msa0979450:five_prime_UTR | 45.0% | |
| !! | TGTTGGTGTCGTGTCAGTGT+CGG | + | chr6_4:16615127-16615146 | None:intergenic | 50.0% |
| GTCATTGTCCGTGTCGTGTT+CGG | - | chr6_4:16615203-16615222 | Msa0979450:intron | 50.0% | |
| TAGACACTCCTCGTATGTCC+CGG | - | chr6_4:16615662-16615681 | Msa0979450:intron | 50.0% | |
| GTCAGTGTCCATATCGTGTC+TGG | - | chr6_4:16615770-16615789 | Msa0979450:intron | 50.0% | |
| TACGGACACCAGACACGATA+TGG | + | chr6_4:16615781-16615800 | None:intergenic | 50.0% | |
| TTGGAAACATAACCGTGCGC+AGG | - | chr6_4:16616368-16616387 | Msa0979450:intron | 50.0% | |
| ! | TCAAGTTTTGCACCTGCGCA+CGG | + | chr6_4:16616383-16616402 | None:intergenic | 50.0% |
| CGCAGGTGCAAAACTTGACA+CGG | - | chr6_4:16616385-16616404 | Msa0979450:intron | 50.0% | |
| GCAGACTTTACACCATCTCG+TGG | - | chr6_4:16617094-16617113 | Msa0979450:intron | 50.0% | |
| ! | ACCCCAGTTCACCATGCTTT+TGG | - | chr6_4:16617121-16617140 | Msa0979450:intron | 50.0% |
| ! | CCCAAAAGCATGGTGAACTG+GGG | + | chr6_4:16617125-16617144 | None:intergenic | 50.0% |
| ! | CCCCAGTTCACCATGCTTTT+GGG | - | chr6_4:16617122-16617141 | Msa0979450:intron | 50.0% |
| ! | GTCCCAAAAGCATGGTGAAC+TGG | + | chr6_4:16617127-16617146 | None:intergenic | 50.0% |
| !! | GAAGAGGCTTTGTTCACACC+AGG | + | chr6_4:16617151-16617170 | None:intergenic | 50.0% |
| ! | GGTGATGATTCGGATCGAGA+AGG | + | chr6_4:16617190-16617209 | None:intergenic | 50.0% |
| AGCACGGACAGTCCCAGATT+AGG | - | chr6_4:16615072-16615091 | Msa0979450:intron | 55.0% | |
| TACGGACACCGAACACGACA+CGG | + | chr6_4:16615214-16615233 | None:intergenic | 55.0% | |
| ACACGACACATGTCCGACAC+CGG | + | chr6_4:16615684-16615703 | None:intergenic | 55.0% | |
| ! | ACTGGGGTGTTACCACGAGA+TGG | + | chr6_4:16617109-16617128 | None:intergenic | 55.0% |
| !!! | CACCATGCTTTTGGGACACC+TGG | - | chr6_4:16617130-16617149 | Msa0979450:intron | 55.0% |
| CACCAGGTGTCCCAAAAGCA+TGG | + | chr6_4:16617135-16617154 | None:intergenic | 55.0% | |
| GTCCCAGATTAGGCGTGTCC+CGG | - | chr6_4:16615082-16615101 | Msa0979450:intron | 60.0% | |
| CACCGGGACACGCCTAATCT+GGG | + | chr6_4:16615087-16615106 | None:intergenic | 60.0% | |
| ACACCGGGACACGCCTAATC+TGG | + | chr6_4:16615088-16615107 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr6_4:16615088-16615107 | Msa0979450:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr6_4:16615104-16615123 | None:intergenic | 60.0% | |
| CTCCTCGTATGTCCCGGTGT+CGG | - | chr6_4:16615668-16615687 | Msa0979450:intron | 60.0% | |
| CACGACACATGTCCGACACC+GGG | + | chr6_4:16615683-16615702 | None:intergenic | 60.0% | |
| GAGTTAGCGCCCGAGCGATA+AGG | + | chr6_4:16617343-16617362 | None:intergenic | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr6_4:16615103-16615122 | None:intergenic | 65.0% | |
| GTCCGACACCGGGACATACG+AGG | + | chr6_4:16615673-16615692 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 16613778 | 16617728 | 16613778 | ID=Msa0979450;Name=Msa0979450 |
| chr6_4 | mRNA | 16613778 | 16617728 | 16613778 | ID=Msa0979450-mRNA-1;Parent=Msa0979450;Name=Msa0979450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=303|1|1|1|1|1|3|209|230 |
| chr6_4 | exon | 16613778 | 16614408 | 16613778 | ID=Msa0979450-mRNA-1:exon:5259;Parent=Msa0979450-mRNA-1 |
| chr6_4 | exon | 16615518 | 16615598 | 16615518 | ID=Msa0979450-mRNA-1:exon:5258;Parent=Msa0979450-mRNA-1 |
| chr6_4 | exon | 16617236 | 16617728 | 16617236 | ID=Msa0979450-mRNA-1:exon:5257;Parent=Msa0979450-mRNA-1 |
| chr6_4 | five_prime_UTR | 16617426 | 16617728 | 16617426 | ID=Msa0979450-mRNA-1:five_prime_utr;Parent=Msa0979450-mRNA-1 |
| chr6_4 | CDS | 16617236 | 16617425 | 16617236 | ID=Msa0979450-mRNA-1:cds;Parent=Msa0979450-mRNA-1 |
| chr6_4 | CDS | 16615518 | 16615598 | 16615518 | ID=Msa0979450-mRNA-1:cds;Parent=Msa0979450-mRNA-1 |
| chr6_4 | CDS | 16613987 | 16614408 | 16613987 | ID=Msa0979450-mRNA-1:cds;Parent=Msa0979450-mRNA-1 |
| chr6_4 | three_prime_UTR | 16613778 | 16613986 | 16613778 | ID=Msa0979450-mRNA-1:three_prime_utr;Parent=Msa0979450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
