AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0946670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946670 MtrunA17_Chr7g0249561 99.231 130 1 0 1 130 1 130 3.46e-93 265
Msa0946670 MtrunA17_Chr7g0249801 52.066 121 48 3 10 129 7 118 1.25e-35 119
Msa0946670 MtrunA17_Chr4g0076301 51.948 77 37 0 54 130 47 123 2.65e-21 82.8
Msa0946670 MtrunA17_Chr8g0385881 41.772 79 44 2 53 130 61 138 3.45e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946670 AT1G65290.1 72.180 133 27 3 1 130 1 126 6.69e-60 181
Msa0946670 AT2G44620.1 53.488 129 52 4 1 129 1 121 6.31e-36 120
Msa0946670 AT5G47630.1 37.097 124 71 3 10 130 8 127 1.40e-19 79.0
Msa0946670 AT5G47630.2 37.097 124 71 3 10 130 8 127 1.40e-19 79.0
Msa0946670 AT5G47630.3 37.097 124 71 3 10 130 8 127 1.40e-19 79.0

Find 54 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTAGAAGGATCAACTTTC+TGG 0.153197 6_3:-28519487 None:intergenic
ATCTTGTCTGCTTCATTATC+AGG 0.242778 6_3:-28521261 None:intergenic
GAAACGACGAAGGAAGAAAT+TGG 0.274656 6_3:-28519390 None:intergenic
TATCCAATCCAAGGTCATTC+TGG 0.280875 6_3:-28521182 None:intergenic
TCCCCAGCCAAACACACTTT+TGG 0.287162 6_3:-28521472 None:intergenic
CCAGAAAGTTGATCCTTCTA+AGG 0.310928 6_3:+28519487 Msa0946670:CDS
GTCGTTTCAGCGAAGAGGTT+AGG 0.325470 6_3:+28519405 Msa0946670:CDS
TGACCTTGGATTGGATAGTT+TGG 0.330609 6_3:+28521188 Msa0946670:CDS
ATGGCTCTTGAGGAAGAGTT+TGG 0.348440 6_3:+28521228 Msa0946670:CDS
TCGTTTCAGCGAAGAGGTTA+GGG 0.350830 6_3:+28519406 Msa0946670:CDS
CTAAATCCCAAAAGTGTGTT+TGG 0.352275 6_3:+28521465 Msa0946670:three_prime_UTR
TTTACGATTACAGAATCTTA+AGG 0.391212 6_3:+28521594 Msa0946670:three_prime_UTR
ATGAATTCCACTACTTTGCC+TGG 0.402676 6_3:-28521326 None:intergenic
ATCCCAAAAGTGTGTTTGGC+TGG 0.403903 6_3:+28521469 Msa0946670:three_prime_UTR
AGGAATGGATATACCTTAGA+AGG 0.404336 6_3:-28519500 None:intergenic
TGGCTCTTGAGGAAGAGTTT+GGG 0.415460 6_3:+28521229 Msa0946670:CDS
AGTATTGGCATTTCATAACT+TGG 0.421265 6_3:+28521527 Msa0946670:three_prime_UTR
ACAATGGCGGCGAGAAGAAC+CGG 0.449215 6_3:+28519290 Msa0946670:exon
TTTCCAGAATGACCTTGGAT+TGG 0.459097 6_3:+28521179 Msa0946670:CDS
AAAGGCGATTGGTGGTTCAA+TGG 0.465586 6_3:-28519356 None:intergenic
GTAATTGATCAGAGGTAAAC+CGG 0.480151 6_3:-28519309 None:intergenic
TCCCAAAAGTGTGTTTGGCT+GGG 0.488684 6_3:+28521470 Msa0946670:three_prime_UTR
AAACGACGAAGGAAGAAATT+GGG 0.492698 6_3:-28519389 None:intergenic
GCTCATTTCCAGAATGACCT+TGG 0.503501 6_3:+28521174 Msa0946670:CDS
TGAATTCCACTACTTTGCCT+GGG 0.511311 6_3:-28521325 None:intergenic
GTTCAATTTAAGCAAACAAG+TGG 0.519121 6_3:-28521425 None:intergenic
TCATTCTGGAAATGAGCACT+TGG 0.522843 6_3:-28521168 None:intergenic
CTTCATTGCATCTCATCCCC+AGG 0.529562 6_3:+28521308 Msa0946670:CDS
GTCTTGTTTCATGTTATGTG+AGG 0.530605 6_3:+28521673 Msa0946670:three_prime_UTR
CCTTCGTCGTTTCAGCGAAG+AGG 0.534191 6_3:+28519400 Msa0946670:CDS
AAATTGGGAAGAAGACGAAA+AGG 0.543498 6_3:-28519374 None:intergenic
GAGAATCAACTTGCACTCTC+AGG 0.548584 6_3:-28519331 None:intergenic
AAGTAAAATACAACTCGAGC+TGG 0.554852 6_3:-28521499 None:intergenic
CATTCTGGAAATGAGCACTT+GGG 0.569313 6_3:-28521167 None:intergenic
CTCATCCCCAGGCAAAGTAG+TGG 0.584414 6_3:+28521319 Msa0946670:CDS
CCCAAAAGTGTGTTTGGCTG+GGG 0.584451 6_3:+28521471 Msa0946670:three_prime_UTR
TCTTGTTTCATGTTATGTGA+GGG 0.585940 6_3:+28521674 Msa0946670:three_prime_UTR
AGCAGAGAGAGAGAAGAGTG+AGG 0.586439 6_3:+28519252 Msa0946670:five_prime_UTR
GAAGAAGACGAAAAGGCGAT+TGG 0.587345 6_3:-28519367 None:intergenic
GAAGACGAAAAGGCGATTGG+TGG 0.593083 6_3:-28519364 None:intergenic
TATTCATTTCATTCATCGCG+TGG 0.597536 6_3:+28519222 Msa0946670:five_prime_UTR
AGAGATTGTGATGGCTCTTG+AGG 0.598690 6_3:+28521218 Msa0946670:CDS
CGTTTCAGCGAAGAGGTTAG+GGG 0.604330 6_3:+28519407 Msa0946670:CDS
GCGATGAATGAAATGAATAG+TGG 0.615247 6_3:-28519218 None:intergenic
GGATGCTGTAGAGATTGTGA+TGG 0.619499 6_3:+28521209 Msa0946670:CDS
GAATTCCACTACTTTGCCTG+GGG 0.620707 6_3:-28521324 None:intergenic
TTTGATATCTACAACAATGG+CGG 0.632027 6_3:+28519277 Msa0946670:exon
CATCCAAACTATCCAATCCA+AGG 0.636485 6_3:-28521191 None:intergenic
TACGTTTCTCGACAAATCTG+AGG 0.640218 6_3:+28519430 Msa0946670:CDS
ATTCTGGAAATGAGCACTTG+GGG 0.645151 6_3:-28521166 None:intergenic
GCAAAGTAGTGGAATTCATG+AGG 0.659430 6_3:+28521330 Msa0946670:exon
CCTCTTCGCTGAAACGACGA+AGG 0.663136 6_3:-28519400 None:intergenic
ACTCTCAGGTAATTGATCAG+AGG 0.675792 6_3:-28519317 None:intergenic
TGAGCATACACTAAGAAGTG+AGG 0.685947 6_3:-28521629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATTTCCGATAATT+AGG + chr6_3:28519636-28519655 Msa0946670:intron 15.0%
!! TTAACTTTATCTTTAGTTAT+AGG - chr6_3:28519713-28519732 None:intergenic 15.0%
!!! ATTGTTTTCATATAAGTTAT+AGG + chr6_3:28519737-28519756 Msa0946670:intron 15.0%
!!! TTGTTTTCATATAAGTTATA+GGG + chr6_3:28519738-28519757 Msa0946670:intron 15.0%
!!! TTTAACTTTATTTTACCTTT+TGG - chr6_3:28519848-28519867 None:intergenic 15.0%
!! TACAAAAATATATAAATCCT+TGG + chr6_3:28520244-28520263 Msa0946670:intron 15.0%
!! AACTAAAACAATGTTATTAT+CGG - chr6_3:28520401-28520420 None:intergenic 15.0%
!!! TATTTTACTTTTGTTAGTAT+TGG + chr6_3:28521512-28521531 Msa0946670:three_prime_UTR 15.0%
!!! ATTTTTATTGACATGAAAAA+TGG - chr6_3:28521565-28521584 None:intergenic 15.0%
!! TGATGAATGAAACAATAATT+AGG - chr6_3:28519556-28519575 None:intergenic 20.0%
!!! GCTATTTTTATAAGCTATAT+TGG + chr6_3:28519889-28519908 Msa0946670:intron 20.0%
!!! TAAGCTAGATTATTTTCTTA+AGG - chr6_3:28520046-28520065 None:intergenic 20.0%
!!! ATTTTTGTATTGCATTTTAG+TGG - chr6_3:28520233-28520252 None:intergenic 20.0%
!!! AACATTGTTTTAGTTATATG+AGG + chr6_3:28520406-28520425 Msa0946670:intron 20.0%
!! AATCTTTCATCAAATTAAGT+AGG + chr6_3:28520444-28520463 Msa0946670:intron 20.0%
!! ATCTTTCATCAAATTAAGTA+GGG + chr6_3:28520445-28520464 Msa0946670:intron 20.0%
!! TCGCAAACAATAATATATTT+GGG - chr6_3:28520652-28520671 None:intergenic 20.0%
!! ATCGCAAACAATAATATATT+TGG - chr6_3:28520653-28520672 None:intergenic 20.0%
!! GTTTTTGATATCTACAACAA+TGG + chr6_3:28519274-28519293 Msa0946670:exon 25.0%
! GAATGATAATAATAGAGGAA+TGG - chr6_3:28519518-28519537 None:intergenic 25.0%
! GAAACGAATGATAATAATAG+AGG - chr6_3:28519523-28519542 None:intergenic 25.0%
! ATTAACGTGATGTTATTGTT+AGG + chr6_3:28519575-28519594 Msa0946670:intron 25.0%
! TCCAAACATTACCTAATTAT+CGG - chr6_3:28519650-28519669 None:intergenic 25.0%
! TAAGCTACTTATATACCAAA+AGG + chr6_3:28519830-28519849 Msa0946670:intron 25.0%
! AAAGTAGCTTATGAAATGTT+TGG - chr6_3:28520018-28520037 None:intergenic 25.0%
! AAACATTTCATAAGCTACTT+TGG + chr6_3:28520017-28520036 Msa0946670:intron 25.0%
! ATATAAGAATTGCTCATTGA+TGG - chr6_3:28520197-28520216 None:intergenic 25.0%
! CAATTCTTATATGAAGCTAA+AGG + chr6_3:28520205-28520224 Msa0946670:intron 25.0%
! TATAAATCCTTGGATTTGAT+TGG + chr6_3:28520254-28520273 Msa0946670:intron 25.0%
! AATTGAGTGTAATTCTTACA+TGG - chr6_3:28520322-28520341 None:intergenic 25.0%
!! ATGGCAATAATTCTCTTTTA+TGG - chr6_3:28520510-28520529 None:intergenic 25.0%
! AAGAGAATTATTGCCATAAA+AGG + chr6_3:28520513-28520532 Msa0946670:intron 25.0%
!! TCAAAAACAGTTTCCTTTTA+TGG - chr6_3:28520529-28520548 None:intergenic 25.0%
! AAGTGATTACTTCATTTAAG+AGG + chr6_3:28520706-28520725 Msa0946670:intron 25.0%
! TACTTCATTTAAGAGGATTA+AGG + chr6_3:28520713-28520732 Msa0946670:intron 25.0%
!!! TAACTTGTTTGAAAACAGTT+TGG - chr6_3:28520829-28520848 None:intergenic 25.0%
! ATAAACTTGTGAGACTAATT+GGG - chr6_3:28520941-28520960 None:intergenic 25.0%
! TATAAACTTGTGAGACTAAT+TGG - chr6_3:28520942-28520961 None:intergenic 25.0%
! TTTACGATTACAGAATCTTA+AGG + chr6_3:28521594-28521613 Msa0946670:three_prime_UTR 25.0%
TTTGATATCTACAACAATGG+CGG + chr6_3:28519277-28519296 Msa0946670:exon 30.0%
TCCGATAATTAGGTAATGTT+TGG + chr6_3:28519646-28519665 Msa0946670:intron 30.0%
TTAGGTAATGTTTGGATCAA+CGG + chr6_3:28519654-28519673 Msa0946670:intron 30.0%
AAAGCTGGTAGCAATATTAA+AGG - chr6_3:28520168-28520187 None:intergenic 30.0%
AACATAACCAATCAAATCCA+AGG - chr6_3:28520264-28520283 None:intergenic 30.0%
! TTGGATTTGATTGGTTATGT+TGG + chr6_3:28520263-28520282 Msa0946670:intron 30.0%
ACTGGTTAAGGATATGAAAA+AGG - chr6_3:28520604-28520623 None:intergenic 30.0%
AAGAAGTTAGAAACAGCTTA+TGG + chr6_3:28520886-28520905 Msa0946670:intron 30.0%
ACAAATAAACCAATCCAAAC+AGG + chr6_3:28520971-28520990 Msa0946670:intron 30.0%
CAAATAAACCAATCCAAACA+GGG + chr6_3:28520972-28520991 Msa0946670:intron 30.0%
ACTTCAAACAGTAAAGTGTA+AGG - chr6_3:28521030-28521049 None:intergenic 30.0%
!! TTGAAGTGTGTTTGTCATTT+TGG + chr6_3:28521043-28521062 Msa0946670:intron 30.0%
CTTATACTCTCTTGTTAACA+TGG + chr6_3:28521113-28521132 Msa0946670:intron 30.0%
GTTCAATTTAAGCAAACAAG+TGG - chr6_3:28521428-28521447 None:intergenic 30.0%
!! AGTATTGGCATTTCATAACT+TGG + chr6_3:28521527-28521546 Msa0946670:three_prime_UTR 30.0%
! TCTTGTTTCATGTTATGTGA+GGG + chr6_3:28521674-28521693 Msa0946670:three_prime_UTR 30.0%
GCGATGAATGAAATGAATAG+TGG - chr6_3:28519221-28519240 None:intergenic 35.0%
TATTCATTTCATTCATCGCG+TGG + chr6_3:28519222-28519241 Msa0946670:five_prime_UTR 35.0%
GTAATTGATCAGAGGTAAAC+CGG - chr6_3:28519312-28519331 None:intergenic 35.0%
AAATTGGGAAGAAGACGAAA+AGG - chr6_3:28519377-28519396 None:intergenic 35.0%
AAACGACGAAGGAAGAAATT+GGG - chr6_3:28519392-28519411 None:intergenic 35.0%
AGGAATGGATATACCTTAGA+AGG - chr6_3:28519503-28519522 None:intergenic 35.0%
TATAAGTTATAGGGCGTGTT+TGG + chr6_3:28519747-28519766 Msa0946670:intron 35.0%
AGCTTATGAAATGTTTGGCT+TGG - chr6_3:28520013-28520032 None:intergenic 35.0%
CATCTACTCATGTAAGCATT+CGG - chr6_3:28520113-28520132 None:intergenic 35.0%
CTGGTAGCAATATTAAAGGA+AGG - chr6_3:28520164-28520183 None:intergenic 35.0%
GATGAAATTATCACTGCCAA+GGG + chr6_3:28520670-28520689 Msa0946670:intron 35.0%
! TGATAAATGGAAAGAAGCAC+AGG - chr6_3:28521141-28521160 None:intergenic 35.0%
TGTGCTTCTTTCCATTTATC+AGG + chr6_3:28521140-28521159 Msa0946670:intron 35.0%
ATCTTGTCTGCTTCATTATC+AGG - chr6_3:28521264-28521283 None:intergenic 35.0%
AGCAAAAAATGTCTTAGCGT+TGG - chr6_3:28521405-28521424 None:intergenic 35.0%
!!! CACACTTTTGGGATTTAGAA+GGG - chr6_3:28521463-28521482 None:intergenic 35.0%
!!! ACACACTTTTGGGATTTAGA+AGG - chr6_3:28521464-28521483 None:intergenic 35.0%
! CTAAATCCCAAAAGTGTGTT+TGG + chr6_3:28521465-28521484 Msa0946670:three_prime_UTR 35.0%
AAGTAAAATACAACTCGAGC+TGG - chr6_3:28521502-28521521 None:intergenic 35.0%
!! GTCTTGTTTCATGTTATGTG+AGG + chr6_3:28521673-28521692 Msa0946670:three_prime_UTR 35.0%
ACTCTCAGGTAATTGATCAG+AGG - chr6_3:28519320-28519339 None:intergenic 40.0%
GAAACGACGAAGGAAGAAAT+TGG - chr6_3:28519393-28519412 None:intergenic 40.0%
TACGTTTCTCGACAAATCTG+AGG + chr6_3:28519430-28519449 Msa0946670:CDS 40.0%
CCTTAGAAGGATCAACTTTC+TGG - chr6_3:28519490-28519509 None:intergenic 40.0%
! CCAGAAAGTTGATCCTTCTA+AGG + chr6_3:28519487-28519506 Msa0946670:CDS 40.0%
GCTTATCTACGAGACTCTTT+GGG - chr6_3:28519981-28520000 None:intergenic 40.0%
AGCTTATCTACGAGACTCTT+TGG - chr6_3:28519982-28520001 None:intergenic 40.0%
CTAGCTTATAGACGTGTCAT+TGG + chr6_3:28520058-28520077 Msa0946670:intron 40.0%
ACATTGTTCAGGAGAGCTTA+TGG - chr6_3:28520090-28520109 None:intergenic 40.0%
TAAGCATTCGGACATTGTTC+AGG - chr6_3:28520101-28520120 None:intergenic 40.0%
CGATGAAATTATCACTGCCA+AGG + chr6_3:28520669-28520688 Msa0946670:intron 40.0%
CTTAAGAGAGATCAAACCCT+TGG - chr6_3:28520689-28520708 None:intergenic 40.0%
! TAAGCTATCCTAGAGAGCAT+AGG + chr6_3:28520862-28520881 Msa0946670:intron 40.0%
ACTTCTTTCCTATGCTCTCT+AGG - chr6_3:28520873-28520892 None:intergenic 40.0%
GTTTACACTATAGCCCTGTT+TGG - chr6_3:28520988-28521007 None:intergenic 40.0%
AGTACACAATTGCTTGCAGA+GGG - chr6_3:28521080-28521099 None:intergenic 40.0%
TAGTACACAATTGCTTGCAG+AGG - chr6_3:28521081-28521100 None:intergenic 40.0%
ACTTGGGGTAACCTGATAAA+TGG - chr6_3:28521154-28521173 None:intergenic 40.0%
! ATTCTGGAAATGAGCACTTG+GGG - chr6_3:28521169-28521188 None:intergenic 40.0%
! CATTCTGGAAATGAGCACTT+GGG - chr6_3:28521170-28521189 None:intergenic 40.0%
! TCATTCTGGAAATGAGCACT+TGG - chr6_3:28521171-28521190 None:intergenic 40.0%
TTTCCAGAATGACCTTGGAT+TGG + chr6_3:28521179-28521198 Msa0946670:CDS 40.0%
TATCCAATCCAAGGTCATTC+TGG - chr6_3:28521185-28521204 None:intergenic 40.0%
! TGACCTTGGATTGGATAGTT+TGG + chr6_3:28521188-28521207 Msa0946670:CDS 40.0%
CATCCAAACTATCCAATCCA+AGG - chr6_3:28521194-28521213 None:intergenic 40.0%
TGAATTCCACTACTTTGCCT+GGG - chr6_3:28521328-28521347 None:intergenic 40.0%
ATGAATTCCACTACTTTGCC+TGG - chr6_3:28521329-28521348 None:intergenic 40.0%
! GCAAAGTAGTGGAATTCATG+AGG + chr6_3:28521330-28521349 Msa0946670:exon 40.0%
TGAGCATACACTAAGAAGTG+AGG - chr6_3:28521632-28521651 None:intergenic 40.0%
GAGAATCAACTTGCACTCTC+AGG - chr6_3:28519334-28519353 None:intergenic 45.0%
! AAAGGCGATTGGTGGTTCAA+TGG - chr6_3:28519359-28519378 None:intergenic 45.0%
GAAGAAGACGAAAAGGCGAT+TGG - chr6_3:28519370-28519389 None:intergenic 45.0%
TCGTTTCAGCGAAGAGGTTA+GGG + chr6_3:28519406-28519425 Msa0946670:CDS 45.0%
TTAAGTAGGGTCCTGCTAAC+TGG + chr6_3:28520458-28520477 Msa0946670:intron 45.0%
CTTGTGAGACTAATTGGGAG+AGG - chr6_3:28520936-28520955 None:intergenic 45.0%
CACTATAGCCCTGTTTGGAT+TGG - chr6_3:28520983-28521002 None:intergenic 45.0%
GCTCATTTCCAGAATGACCT+TGG + chr6_3:28521174-28521193 Msa0946670:CDS 45.0%
GGATGCTGTAGAGATTGTGA+TGG + chr6_3:28521209-28521228 Msa0946670:CDS 45.0%
AGAGATTGTGATGGCTCTTG+AGG + chr6_3:28521218-28521237 Msa0946670:CDS 45.0%
ATGGCTCTTGAGGAAGAGTT+TGG + chr6_3:28521228-28521247 Msa0946670:CDS 45.0%
TGGCTCTTGAGGAAGAGTTT+GGG + chr6_3:28521229-28521248 Msa0946670:CDS 45.0%
GAATTCCACTACTTTGCCTG+GGG - chr6_3:28521327-28521346 None:intergenic 45.0%
!!! TTTTGGGATTTAGAAGGGCG+AGG - chr6_3:28521458-28521477 None:intergenic 45.0%
! ATCCCAAAAGTGTGTTTGGC+TGG + chr6_3:28521469-28521488 Msa0946670:three_prime_UTR 45.0%
! TCCCAAAAGTGTGTTTGGCT+GGG + chr6_3:28521470-28521489 Msa0946670:three_prime_UTR 45.0%
AGCAGAGAGAGAGAAGAGTG+AGG + chr6_3:28519252-28519271 Msa0946670:five_prime_UTR 50.0%
GAAGACGAAAAGGCGATTGG+TGG - chr6_3:28519367-28519386 None:intergenic 50.0%
GTCGTTTCAGCGAAGAGGTT+AGG + chr6_3:28519405-28519424 Msa0946670:CDS 50.0%
CGTTTCAGCGAAGAGGTTAG+GGG + chr6_3:28519407-28519426 Msa0946670:CDS 50.0%
!! CATTGATGGCGTCGTAAAGC+TGG - chr6_3:28520183-28520202 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG + chr6_3:28520608-28520627 Msa0946670:intron 50.0%
ATATCCTTAACCAGTGCCCC+GGG + chr6_3:28520609-28520628 Msa0946670:intron 50.0%
CTTCATTGCATCTCATCCCC+AGG + chr6_3:28521308-28521327 Msa0946670:CDS 50.0%
! CCCCAGCCAAACACACTTTT+GGG - chr6_3:28521474-28521493 None:intergenic 50.0%
! CCCAAAAGTGTGTTTGGCTG+GGG + chr6_3:28521471-28521490 Msa0946670:three_prime_UTR 50.0%
! TCCCCAGCCAAACACACTTT+TGG - chr6_3:28521475-28521494 None:intergenic 50.0%
ACAATGGCGGCGAGAAGAAC+CGG + chr6_3:28519290-28519309 Msa0946670:exon 55.0%
CCTCTTCGCTGAAACGACGA+AGG - chr6_3:28519403-28519422 None:intergenic 55.0%
CCTTCGTCGTTTCAGCGAAG+AGG + chr6_3:28519400-28519419 Msa0946670:CDS 55.0%
TATGCTTAACCAGTGCCCCG+GGG - chr6_3:28520487-28520506 None:intergenic 55.0%
GTATGCTTAACCAGTGCCCC+GGG - chr6_3:28520488-28520507 None:intergenic 55.0%
GGTATGCTTAACCAGTGCCC+CGG - chr6_3:28520489-28520508 None:intergenic 55.0%
TATCCTTAACCAGTGCCCCG+GGG + chr6_3:28520610-28520629 Msa0946670:intron 55.0%
AAATGCTAACCGTTGCCCCC+GGG - chr6_3:28520629-28520648 None:intergenic 55.0%
GAAATGCTAACCGTTGCCCC+CGG - chr6_3:28520630-28520649 None:intergenic 55.0%
CTCATCCCCAGGCAAAGTAG+TGG + chr6_3:28521319-28521338 Msa0946670:CDS 55.0%
ATGCTTAACCAGTGCCCCGG+GGG - chr6_3:28520486-28520505 None:intergenic 60.0%
ATCCTTAACCAGTGCCCCGG+GGG + chr6_3:28520611-28520630 Msa0946670:intron 60.0%
AATGCTAACCGTTGCCCCCG+GGG - chr6_3:28520628-28520647 None:intergenic 60.0%
GTCCTGCTAACTGGTGCCCC+CGG + chr6_3:28520467-28520486 Msa0946670:intron 65.0%
TCCTGCTAACTGGTGCCCCC+GGG + chr6_3:28520468-28520487 Msa0946670:intron 65.0%
CCTGCTAACTGGTGCCCCCG+GGG + chr6_3:28520469-28520488 Msa0946670:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr6_3:28520481-28520500 None:intergenic 70.0%
AACCAGTGCCCCGGGGGCAA+CGG + chr6_3:28520617-28520636 Msa0946670:intron 70.0%
!! CCCCGGGGGCACCAGTTAGC+AGG - chr6_3:28520472-28520491 None:intergenic 75.0%
AACTGGTGCCCCCGGGGCAC+TGG + chr6_3:28520475-28520494 Msa0946670:intron 75.0%
AACCGTTGCCCCCGGGGCAC+TGG - chr6_3:28520622-28520641 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 28519209 28521751 28519209 ID=Msa0946670;Name=Msa0946670
chr6_3 mRNA 28519209 28521751 28519209 ID=Msa0946670-mRNA-1;Parent=Msa0946670;Name=Msa0946670-mRNA-1;_AED=0.06;_eAED=0.06;_QI=84|1|1|1|1|1|2|413|130
chr6_3 exon 28519209 28519508 28519209 ID=Msa0946670-mRNA-1:exon:7616;Parent=Msa0946670-mRNA-1
chr6_3 exon 28521162 28521751 28521162 ID=Msa0946670-mRNA-1:exon:7617;Parent=Msa0946670-mRNA-1
chr6_3 five_prime_UTR 28519209 28519292 28519209 ID=Msa0946670-mRNA-1:five_prime_utr;Parent=Msa0946670-mRNA-1
chr6_3 CDS 28519293 28519508 28519293 ID=Msa0946670-mRNA-1:cds;Parent=Msa0946670-mRNA-1
chr6_3 CDS 28521162 28521338 28521162 ID=Msa0946670-mRNA-1:cds;Parent=Msa0946670-mRNA-1
chr6_3 three_prime_UTR 28521339 28521751 28521339 ID=Msa0946670-mRNA-1:three_prime_utr;Parent=Msa0946670-mRNA-1
Gene Sequence

>Msa0946670

ATGGCGGCGAGAAGAACCGGTTTACCTCTGATCAATTACCTGAGAGTGCAAGTTGATTCTCGTCCATTGAACCACCAATCGCCTTTTCGTCTTCTTCCCAATTTCTTCCTTCGTCGTTTCAGCGAAGAGGTTAGGGGTACGTTTCTCGACAAATCTGAGGTCACAGATCGCGTCGTTTCTTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCTAAGGTTACCCCAAGTGCTCATTTCCAGAATGACCTTGGATTGGATAGTTTGGATGCTGTAGAGATTGTGATGGCTCTTGAGGAAGAGTTTGGGTTTGAGATTCCTGATAATGAAGCAGACAAGATCAACTCTGTTAATCTTGCAATTGACTTCATTGCATCTCATCCCCAGGCAAAGTAG
Protein sequence

>Msa0946670

MAARRTGLPLINYLRVQVDSRPLNHQSPFRLLPNFFLRRFSEEVRGTFLDKSEVTDRVVSCVKNFQKVDPSKVTPSAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSVNLAIDFIASHPQAK*