AlfalfaGEDB | Msa1156190

M. sativa cultivar zhongmu-4 / Msa1156190

KEGG: K03955
GO: GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509
PFAM: PF00550.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156190	XP_003624206.1	99.231	130	1	0	1	130	1	130	3.76e-89	265

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156190	sp\|O80800\|ACPM2_ARATH	72.180	133	27	3	1	130	1	126	6.58e-59	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156190	B7FLI7	99.231	130	1	0	1	130	1	130	1.80e-89	265

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0100730	Msa1156190	0.803520	3.352694e-49	-8.615850e-47
Msa0224560	Msa1156190	0.809772	1.604298e-50	-8.615850e-47
Msa0946670	Msa1156190	0.984277	4.283159e-160	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156190	MtrunA17_Chr7g0249561	99.231	130	1	0	1	130	1	130	3.46e-93	265
Msa1156190	MtrunA17_Chr7g0249801	52.066	121	48	3	10	129	7	118	1.25e-35	119
Msa1156190	MtrunA17_Chr4g0076301	51.948	77	37	0	54	130	47	123	2.65e-21	82.8
Msa1156190	MtrunA17_Chr8g0385881	41.772	79	44	2	53	130	61	138	3.45e-11	57.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156190	AT1G65290.1	72.180	133	27	3	1	130	1	126	6.69e-60	181
Msa1156190	AT2G44620.1	53.488	129	52	4	1	129	1	121	6.31e-36	120
Msa1156190	AT5G47630.1	37.097	124	71	3	10	130	8	127	1.40e-19	79.0
Msa1156190	AT5G47630.2	37.097	124	71	3	10	130	8	127	1.40e-19	79.0
Msa1156190	AT5G47630.3	37.097	124	71	3	10	130	8	127	1.40e-19	79.0

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Find 54 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACGAAGGAAGAAATT+GGG	0.492698	7_4:+44434820	None:intergenic
AAAGGCGATTGGTGGTTCAA+TGG	0.465586	7_4:+44434853	None:intergenic
AAATTGGGAAGAAGACGAAA+AGG	0.543498	7_4:+44434835	None:intergenic
AAGTAAAATACAACTCGAGC+TGG	0.554852	7_4:+44432710	None:intergenic
ACAATGGCGGCGAGAAGAAC+CGG	0.449215	7_4:-44434919	Msa1156190:CDS
ACTCTCAGGTAATTGATCAG+AGG	0.675792	7_4:+44434892	None:intergenic
AGAGATTGTGATGGCTCTTG+AGG	0.598690	7_4:-44432991	Msa1156190:CDS
AGCAGAGAGAGAGAAGAGTG+AGG	0.586439	7_4:-44434957	Msa1156190:five_prime_UTR
AGGAATGAATATACCTTAGA+AGG	0.366704	7_4:+44434709	None:intergenic
AGTATTGGCATTTCATAACT+TGG	0.421265	7_4:-44432682	Msa1156190:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGATATCTACAACAATGG+CGG	-	chr7_4:44432548-44432567	Msa1156190:three_prime_UTR	30.0%
AGGAATGAATATACCTTAGA+AGG	+	chr7_4:44432774-44432793	None:intergenic	30.0%
TCCGATAATTAGGTAATGTT+TGG	-	chr7_4:44432917-44432936	Msa1156190:CDS	30.0%
TTAGGTAATGTTTGGATCAA+CGG	-	chr7_4:44432925-44432944	Msa1156190:CDS	30.0%
AAAGCTGGTAGCAATATTAA+AGG	+	chr7_4:44433439-44433458	None:intergenic	30.0%
AACATAACCAATCAAATCCA+AGG	+	chr7_4:44433535-44433554	None:intergenic	30.0%
ACTGGTTAAGGATATGAAAA+AGG	+	chr7_4:44433875-44433894	None:intergenic	30.0%
AAGAAGTTAGAAACAGCTTA+TGG	-	chr7_4:44434157-44434176	Msa1156190:intron	30.0%
ACAAATAAACCAATCCAAAC+AGG	-	chr7_4:44434242-44434261	Msa1156190:intron	30.0%
CAAATAAACCAATCCAAACA+GGG	-	chr7_4:44434243-44434262	Msa1156190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	44432480	44435022	44432480	ID=Msa1156190;Name=Msa1156190
chr7_4	mRNA	44432480	44435022	44432480	ID=Msa1156190-mRNA-1;Parent=Msa1156190;Name=Msa1156190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=84\|1\|1\|1\|1\|1\|2\|413\|130
chr7_4	exon	44432480	44433069	44432480	ID=Msa1156190-mRNA-1:exon:11368;Parent=Msa1156190-mRNA-1
chr7_4	exon	44434723	44435022	44434723	ID=Msa1156190-mRNA-1:exon:11367;Parent=Msa1156190-mRNA-1
chr7_4	five_prime_UTR	44434939	44435022	44434939	ID=Msa1156190-mRNA-1:five_prime_utr;Parent=Msa1156190-mRNA-1
chr7_4	CDS	44434723	44434938	44434723	ID=Msa1156190-mRNA-1:cds;Parent=Msa1156190-mRNA-1
chr7_4	CDS	44432893	44433069	44432893	ID=Msa1156190-mRNA-1:cds;Parent=Msa1156190-mRNA-1
chr7_4	three_prime_UTR	44432480	44432892	44432480	ID=Msa1156190-mRNA-1:three_prime_utr;Parent=Msa1156190-mRNA-1

Gene Sequence

>Msa1156190

ATGGCGGCGAGAAGAACCGGTTTACCTCTGATCAATTACCTGAGAGTGCAAGTTGATTCTCGTCCATTGAACCACCAATCGCCTTTTCGTCTTCTTCCCAATTTCTTCCTTCGTCGTTTCAGCGAAGAGGTTAGGGGTACGTTTCTCGACAAATCTGAGGTCACAGATCGCGTCGTTTCTTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCTAAGGTTACCCCAAGTGCTCATTTCCAGAATGACCTTGGATTGGATAGTTTGGATGCTGTAGAGATTGTGATGGCTCTTGAGGAAGAGTTTGGGTTTGAGATTCCTGATAATGAAGCAGACAAGATCAACTCTGTTAATCTTGCAATTGACTTCATTGCATCTCATCCCCAGGCAAAGTAG

Protein sequence

>Msa1156190

MAARRTGLPLINYLRVQVDSRPLNHQSPFRLLPNFFLRRFSEEVRGTFLDKSEVTDRVVSCVKNFQKVDPSKVTPSAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSVNLAIDFIASHPQAK*