Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948850 | XP_024635139.1 | 74.490 | 98 | 20 | 1 | 5 | 102 | 25 | 117 | 1.68e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717140 | Msa0948850 | 0.868150 | 8.087571e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948850 | MtrunA17_Chr1g0183031 | 94.366 | 71 | 4 | 0 | 32 | 102 | 98 | 168 | 1.87e-41 | 139 |
| Msa0948850 | MtrunA17_Chr7g0262551 | 60.563 | 71 | 28 | 0 | 32 | 102 | 94 | 164 | 1.94e-25 | 97.4 |
| Msa0948850 | MtrunA17_Chr1g0183021 | 63.380 | 71 | 26 | 0 | 32 | 102 | 196 | 266 | 5.04e-20 | 83.2 |
| Msa0948850 | MtrunA17_Chr7g0262571 | 52.113 | 71 | 34 | 0 | 32 | 102 | 149 | 219 | 1.10e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948850 | AT4G28706.1 | 63.380 | 71 | 26 | 0 | 32 | 102 | 131 | 201 | 3.76e-25 | 97.4 |
| Msa0948850 | AT4G28706.3 | 63.380 | 71 | 26 | 0 | 32 | 102 | 133 | 203 | 3.83e-25 | 97.4 |
| Msa0948850 | AT4G28706.2 | 63.380 | 71 | 26 | 0 | 32 | 102 | 133 | 203 | 3.98e-25 | 97.4 |
| Msa0948850 | AT4G28706.4 | 63.380 | 71 | 26 | 0 | 32 | 102 | 133 | 203 | 5.27e-25 | 97.4 |
| Msa0948850 | AT5G43910.5 | 43.284 | 67 | 38 | 0 | 33 | 99 | 98 | 164 | 1.98e-15 | 70.1 |
| Msa0948850 | AT5G43910.3 | 43.284 | 67 | 38 | 0 | 33 | 99 | 98 | 164 | 2.09e-15 | 69.7 |
| Msa0948850 | AT5G43910.1 | 43.284 | 67 | 38 | 0 | 33 | 99 | 98 | 164 | 2.12e-15 | 69.7 |
| Msa0948850 | AT5G43910.4 | 43.284 | 67 | 38 | 0 | 33 | 99 | 98 | 164 | 3.03e-15 | 69.7 |
| Msa0948850 | AT5G43910.2 | 43.284 | 67 | 38 | 0 | 33 | 99 | 98 | 164 | 4.58e-15 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTCTGTCTCTTCATTT+TGG | 0.095408 | 6_3:+33847027 | Msa0948850:five_prime_UTR |
| CATTCTTCCTTCTCCTAAAA+TGG | 0.139040 | 6_3:+33846849 | Msa0948850:five_prime_UTR |
| GTCTAGATCTCTCTTCATTT+TGG | 0.143948 | 6_3:+33846938 | Msa0948850:five_prime_UTR |
| TCTTTAAAGGTACTTTATTC+TGG | 0.231427 | 6_3:+33849028 | Msa0948850:intron |
| ACATTATGAAACCTCCTTCT+TGG | 0.300705 | 6_3:-33849057 | None:intergenic |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 6_3:-33849968 | None:intergenic |
| TCAATAATAATGTAGCTAAA+TGG | 0.361983 | 6_3:-33849433 | None:intergenic |
| TTTCATTTGTTCGTCATTGT+TGG | 0.364427 | 6_3:+33847077 | Msa0948850:five_prime_UTR |
| ATCTCCCTCACGATCTTCTT+CGG | 0.388938 | 6_3:+33846890 | Msa0948850:five_prime_UTR |
| GTTGTAGCATAATGTAATAT+AGG | 0.406711 | 6_3:+33850032 | Msa0948850:exon |
| ATCATAATTCTAAATAGATT+CGG | 0.418155 | 6_3:+33850058 | Msa0948850:three_prime_UTR |
| TTTCATAATGTACATGTGAT+TGG | 0.428284 | 6_3:+33849069 | Msa0948850:CDS |
| TTTGCACGCGAAAGATCTTC+CGG | 0.437545 | 6_3:-33849913 | None:intergenic |
| GCAATGACAAGAGCAGTTGC+AGG | 0.440063 | 6_3:-33849988 | None:intergenic |
| TGAAAAGAGGAGAGATGAAC+TGG | 0.445185 | 6_3:-33847111 | None:intergenic |
| ATAATGTACATGTGATTGGC+AGG | 0.456154 | 6_3:+33849073 | Msa0948850:CDS |
| AAACCTTCTCCCTCACGATC+TGG | 0.459139 | 6_3:+33846916 | Msa0948850:five_prime_UTR |
| AGATCTTCCGGTACCATTGT+AGG | 0.463214 | 6_3:-33849901 | None:intergenic |
| TGCTCTTGTCATTGCTAAAG+AGG | 0.464049 | 6_3:+33849996 | Msa0948850:CDS |
| TGGTGAAAATGCTTTGGTGG+TGG | 0.490656 | 6_3:+33846973 | Msa0948850:five_prime_UTR |
| AAATTGTTATCTGCATTGAA+TGG | 0.495412 | 6_3:+33849934 | Msa0948850:CDS |
| GAGGATGAGTTGGTGAAAAG+AGG | 0.497120 | 6_3:-33847124 | None:intergenic |
| TGTTTCCAGGTCTCAAAGGA+AGG | 0.519022 | 6_3:+33849403 | Msa0948850:intron |
| ACAAATGAAAGATTTGCAGC+TGG | 0.520974 | 6_3:-33847064 | None:intergenic |
| GAAGAAGATCGTGAGGGAGA+TGG | 0.533797 | 6_3:-33846888 | None:intergenic |
| TATTCTGGTGTATACCAAGA+AGG | 0.550340 | 6_3:+33849043 | Msa0948850:CDS |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 6_3:+33849894 | Msa0948850:CDS |
| CATTTGTTTCCAGGTCTCAA+AGG | 0.559636 | 6_3:+33849399 | Msa0948850:intron |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 6_3:+33849945 | Msa0948850:CDS |
| CAAATGAAAGATTTGCAGCT+GGG | 0.567598 | 6_3:-33847063 | None:intergenic |
| GTTTCCAGGTCTCAAAGGAA+GGG | 0.571955 | 6_3:+33849404 | Msa0948850:intron |
| TGGTGGTGAAAATGCTTTGG+TGG | 0.575117 | 6_3:+33846970 | Msa0948850:five_prime_UTR |
| ACGTGGTGGTGAAAATGCTT+TGG | 0.577107 | 6_3:+33846967 | Msa0948850:five_prime_UTR |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 6_3:+33849888 | Msa0948850:CDS |
| AGACCAGATCGTGAGGGAGA+AGG | 0.586690 | 6_3:-33846919 | None:intergenic |
| GAGATCTAGACCAGATCGTG+AGG | 0.594421 | 6_3:-33846926 | None:intergenic |
| GAGGGAGATGGAAGATGCAA+AGG | 0.605856 | 6_3:-33846876 | None:intergenic |
| CGAACTTGTATATTCACAGA+AGG | 0.625943 | 6_3:+33849874 | Msa0948850:CDS |
| GAACTGACATGAGGATGAGT+TGG | 0.626814 | 6_3:-33847134 | None:intergenic |
| TCTGGTGTATACCAAGAAGG+AGG | 0.629951 | 6_3:+33849046 | Msa0948850:CDS |
| TTTCACCGAAGAAGATCGTG+AGG | 0.640740 | 6_3:-33846895 | None:intergenic |
| TAATGTACATGTGATTGGCA+GGG | 0.640861 | 6_3:+33849074 | Msa0948850:CDS |
| AGATCTAGACCAGATCGTGA+GGG | 0.657532 | 6_3:-33846925 | None:intergenic |
| AATTGGCTTACTCTGACAAG+AGG | 0.673683 | 6_3:-33847169 | None:intergenic |
| TTTAGGAGAAGGAAGAATGG+AGG | 0.676317 | 6_3:-33846845 | None:intergenic |
| GAGAGTCGAGAACTGACATG+AGG | 0.681303 | 6_3:-33847143 | None:intergenic |
| TTCACCGAAGAAGATCGTGA+GGG | 0.695001 | 6_3:-33846894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTACATTTATTCAATT+TGG | + | chr6_3:33848740-33848759 | Msa0948850:intron | 10.0% |
| !!! | TTTTTACATTTATTCAATTT+GGG | + | chr6_3:33848741-33848760 | Msa0948850:intron | 10.0% |
| !! | ATTTAAGAATTTGTAAAAAT+AGG | - | chr6_3:33848866-33848885 | None:intergenic | 10.0% |
| !!! | CACTTATAAAAATTTTTCAA+TGG | - | chr6_3:33847831-33847850 | None:intergenic | 15.0% |
| !! | TTATGAGCATTATATAATAA+AGG | + | chr6_3:33848034-33848053 | Msa0948850:intron | 15.0% |
| !! | TAAATTAGTATTAGTTAGAA+TGG | + | chr6_3:33848881-33848900 | Msa0948850:intron | 15.0% |
| !!! | TTTAACTTGATCATAATTTT+TGG | - | chr6_3:33849605-33849624 | None:intergenic | 15.0% |
| !! | ATCATAATTCTAAATAGATT+CGG | + | chr6_3:33850058-33850077 | Msa0948850:three_prime_UTR | 15.0% |
| !! | TTTGTAAACATTGTAATGTT+TGG | + | chr6_3:33847626-33847645 | Msa0948850:intron | 20.0% |
| !! | CTTACTTACTTATATATTCA+AGG | + | chr6_3:33847708-33847727 | Msa0948850:intron | 20.0% |
| !! | GCTATATAGAATAATCAATA+TGG | + | chr6_3:33847958-33847977 | Msa0948850:intron | 20.0% |
| !! | ATATCTTAATGTGTAAAACT+AGG | - | chr6_3:33848621-33848640 | None:intergenic | 20.0% |
| !! | ATCATTATACTTTAAGTCAT+TGG | + | chr6_3:33848825-33848844 | Msa0948850:intron | 20.0% |
| !!! | TTTTGGTAGTTCTATTAAAT+TGG | - | chr6_3:33848953-33848972 | None:intergenic | 20.0% |
| !!! | TGAATTTGGATTCATTATTT+TGG | - | chr6_3:33848970-33848989 | None:intergenic | 20.0% |
| !! | AGTTCTTTAATTCTCTTTAA+AGG | + | chr6_3:33849015-33849034 | Msa0948850:intron | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | - | chr6_3:33849436-33849455 | None:intergenic | 20.0% |
| !! | ATGTAAAATCATTTAAGCAA+TGG | - | chr6_3:33849475-33849494 | None:intergenic | 20.0% |
| !! | TACAAGTATATGAAAGTTAT+TGG | + | chr6_3:33849568-33849587 | Msa0948850:intron | 20.0% |
| !!! | TTCTCCTATTACTTGTTTTA+GGG | + | chr6_3:33847213-33847232 | Msa0948850:intron | 25.0% |
| !! | TGAGAATTGGAAATTGTTTT+AGG | + | chr6_3:33847245-33847264 | Msa0948850:intron | 25.0% |
| !!! | TTGTTTTAGGATTTCAGAAT+TGG | + | chr6_3:33847258-33847277 | Msa0948850:intron | 25.0% |
| !!! | TGTTTTAGGATTTCAGAATT+GGG | + | chr6_3:33847259-33847278 | Msa0948850:intron | 25.0% |
| !! | TGAGAATTGGAAATTGTTTT+AGG | + | chr6_3:33847245-33847264 | Msa0948850:intron | 25.0% |
| !!! | GAGAATTGGAAATTGTTTTA+GGG | + | chr6_3:33847246-33847265 | Msa0948850:intron | 25.0% |
| !!! | TTGTTTTAGGGTTTTAGAAT+TGG | + | chr6_3:33847317-33847336 | Msa0948850:intron | 25.0% |
| !!! | TGTTTTAGGGTTTTAGAATT+GGG | + | chr6_3:33847318-33847337 | Msa0948850:intron | 25.0% |
| ! | GGTAATTCGAAATTGTTAAT+TGG | + | chr6_3:33847364-33847383 | Msa0948850:intron | 25.0% |
| !!! | TCCTTGCTTTTTTTCTAATT+TGG | + | chr6_3:33847797-33847816 | Msa0948850:intron | 25.0% |
| !!! | CCTTGCTTTTTTTCTAATTT+GGG | + | chr6_3:33847798-33847817 | Msa0948850:intron | 25.0% |
| ! | CTATAATTCATATACTAGCA+AGG | - | chr6_3:33847913-33847932 | None:intergenic | 25.0% |
| !!! | TTTTTCTATGCTTTGTTTAC+AGG | + | chr6_3:33848010-33848029 | Msa0948850:intron | 25.0% |
| !!! | TTTTCTATGCTTTGTTTACA+GGG | + | chr6_3:33848011-33848030 | Msa0948850:intron | 25.0% |
| !! | AGCCTCTTTTTAATGATAAT+GGG | + | chr6_3:33848072-33848091 | Msa0948850:intron | 25.0% |
| ! | TTCCCATTATCATTAAAAAG+AGG | - | chr6_3:33848077-33848096 | None:intergenic | 25.0% |
| !! | ATGATATTTTCTCATATGAG+AGG | - | chr6_3:33848258-33848277 | None:intergenic | 25.0% |
| !!! | TCTTGTTTATGATTTGCTTA+TGG | + | chr6_3:33848487-33848506 | Msa0948850:intron | 25.0% |
| ! | TGCTTATGGCTATAAAATAT+TGG | + | chr6_3:33848501-33848520 | Msa0948850:intron | 25.0% |
| ! | TCAATCATGATATTTCTTGA+TGG | + | chr6_3:33848675-33848694 | Msa0948850:intron | 25.0% |
| ! | AAGTATAATGATATCATGAG+TGG | - | chr6_3:33848817-33848836 | None:intergenic | 25.0% |
| ! | ACATCAAAAGGATTTGAATT+TGG | - | chr6_3:33848984-33849003 | None:intergenic | 25.0% |
| !!! | TCTTTAAAGGTACTTTATTC+TGG | + | chr6_3:33849028-33849047 | Msa0948850:intron | 25.0% |
| ! | TTTCATAATGTACATGTGAT+TGG | + | chr6_3:33849069-33849088 | Msa0948850:CDS | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | - | chr6_3:33849273-33849292 | None:intergenic | 25.0% |
| ! | TCAAGTTAAATTTAAGCACT+AGG | + | chr6_3:33849615-33849634 | Msa0948850:intron | 25.0% |
| ! | AAATTGTTATCTGCATTGAA+TGG | + | chr6_3:33849934-33849953 | Msa0948850:CDS | 25.0% |
| ! | GTTGTAGCATAATGTAATAT+AGG | + | chr6_3:33850032-33850051 | Msa0948850:exon | 25.0% |
| ! | ATGCAAAGGTTTTCCATTTT+AGG | - | chr6_3:33846865-33846884 | None:intergenic | 30.0% |
| TTTCATTTGTTCGTCATTGT+TGG | + | chr6_3:33847077-33847096 | Msa0948850:five_prime_UTR | 30.0% | |
| CTAAAACAAGTAATAGGAGA+AGG | - | chr6_3:33847214-33847233 | None:intergenic | 30.0% | |
| !! | CTTCTCCTATTACTTGTTTT+AGG | + | chr6_3:33847212-33847231 | Msa0948850:intron | 30.0% |
| GAAACCCTAAAACAAGTAAT+AGG | - | chr6_3:33847220-33847239 | None:intergenic | 30.0% | |
| !!! | GTTTTAGGATTTCAGAATTG+GGG | + | chr6_3:33847260-33847279 | Msa0948850:intron | 30.0% |
| !!! | GTTTTAGGGTTTTAGAATTG+GGG | + | chr6_3:33847319-33847338 | Msa0948850:intron | 30.0% |
| ! | TTAGAATTGGGGATTGTTTT+AGG | + | chr6_3:33847330-33847349 | Msa0948850:intron | 30.0% |
| !! | TAGAATTGGGGATTGTTTTA+GGG | + | chr6_3:33847331-33847350 | Msa0948850:intron | 30.0% |
| !!! | TTGTTTTAGGGTGTCAAAAT+TGG | + | chr6_3:33847343-33847362 | Msa0948850:intron | 30.0% |
| TAGAAAACAACTAGTACACA+TGG | - | chr6_3:33847598-33847617 | None:intergenic | 30.0% | |
| CTTATATATTCAAGGCTTTG+AGG | + | chr6_3:33847716-33847735 | Msa0948850:intron | 30.0% | |
| CCCAAATTAGAAAAAAAGCA+AGG | - | chr6_3:33847801-33847820 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTTCTAATTTGGGT+CGG | + | chr6_3:33847802-33847821 | Msa0948850:intron | 30.0% |
| ATAGCATCACATCTTATTAG+AGG | - | chr6_3:33847943-33847962 | None:intergenic | 30.0% | |
| ! | GAGCCTCTTTTTAATGATAA+TGG | + | chr6_3:33848071-33848090 | Msa0948850:intron | 30.0% |
| TAGTCTTTCTATTGTAGACT+TGG | + | chr6_3:33848334-33848353 | Msa0948850:intron | 30.0% | |
| !! | ATACACTTCCCTTTTTCATA+GGG | + | chr6_3:33848414-33848433 | Msa0948850:intron | 30.0% |
| TTGGTGAAGTTAAATACAAC+TGG | + | chr6_3:33848520-33848539 | Msa0948850:intron | 30.0% | |
| TGGTGAAGTTAAATACAACT+GGG | + | chr6_3:33848521-33848540 | Msa0948850:intron | 30.0% | |
| GAATCACTAATCCAATTAGA+AGG | + | chr6_3:33848561-33848580 | Msa0948850:intron | 30.0% | |
| TCCAATTAGAAGGCTTATAT+AGG | + | chr6_3:33848571-33848590 | Msa0948850:intron | 30.0% | |
| ACCTATATAAGCCTTCTAAT+TGG | - | chr6_3:33848575-33848594 | None:intergenic | 30.0% | |
| ! | TCTATGACTCTTGAAACTTT+TGG | + | chr6_3:33848710-33848729 | Msa0948850:intron | 30.0% |
| TATGAAGTAGCATCTATCTA+AGG | - | chr6_3:33848771-33848790 | None:intergenic | 30.0% | |
| ! | TAGATAGATGCTACTTCATA+AGG | + | chr6_3:33848771-33848790 | Msa0948850:intron | 30.0% |
| GATTTGCATTGAAAGAGATA+TGG | + | chr6_3:33848915-33848934 | Msa0948850:intron | 30.0% | |
| !! | AAGCACTAGGAGTATTAAAA+AGG | + | chr6_3:33849628-33849647 | Msa0948850:intron | 30.0% |
| AGACATGCTTGATAGATAAT+TGG | + | chr6_3:33849684-33849703 | Msa0948850:intron | 30.0% | |
| AATTGGATTTCTTAAGCATG+TGG | + | chr6_3:33849701-33849720 | Msa0948850:intron | 30.0% | |
| ! | TAAGCATGTGGTTTGATAAT+CGG | + | chr6_3:33849713-33849732 | Msa0948850:intron | 30.0% |
| TCCTATAATGTTGAACATTC+AGG | + | chr6_3:33849845-33849864 | Msa0948850:intron | 30.0% | |
| TCCTGAATGTTCAACATTAT+AGG | - | chr6_3:33849849-33849868 | None:intergenic | 30.0% | |
| ! | CTATTAGTACTTTTCTCAAG+AGG | + | chr6_3:33850104-33850123 | Msa0948850:three_prime_UTR | 30.0% |
| !! | CATTTTAGGAGAAGGAAGAA+TGG | - | chr6_3:33846851-33846870 | None:intergenic | 35.0% |
| CATTCTTCCTTCTCCTAAAA+TGG | + | chr6_3:33846849-33846868 | Msa0948850:five_prime_UTR | 35.0% | |
| !! | AGGTTTTCCATTTTAGGAGA+AGG | - | chr6_3:33846859-33846878 | None:intergenic | 35.0% |
| ! | GTCTAGATCTCTCTTCATTT+TGG | + | chr6_3:33846938-33846957 | Msa0948850:five_prime_UTR | 35.0% |
| CAAATGAAAGATTTGCAGCT+GGG | - | chr6_3:33847066-33847085 | None:intergenic | 35.0% | |
| ACAAATGAAAGATTTGCAGC+TGG | - | chr6_3:33847067-33847086 | None:intergenic | 35.0% | |
| AGGGTTTCAGAATTGAGAAT+TGG | + | chr6_3:33847232-33847251 | Msa0948850:intron | 35.0% | |
| ! | TCAGAATTGGGGATTGTTTT+AGG | + | chr6_3:33847271-33847290 | Msa0948850:intron | 35.0% |
| !! | CAGAATTGGGGATTGTTTTA+GGG | + | chr6_3:33847272-33847291 | Msa0948850:intron | 35.0% |
| ATTTGACAACACTGCTTTGT+TGG | + | chr6_3:33847540-33847559 | Msa0948850:intron | 35.0% | |
| !! | TAAAGCTAACTTGCTACTAC+TGG | - | chr6_3:33848117-33848136 | None:intergenic | 35.0% |
| AAGTATAGCAACTTGTGTGT+TGG | - | chr6_3:33848375-33848394 | None:intergenic | 35.0% | |
| ACACACAAGTTGCTATACTT+TGG | + | chr6_3:33848375-33848394 | Msa0948850:intron | 35.0% | |
| !! | GATACACTTCCCTTTTTCAT+AGG | + | chr6_3:33848413-33848432 | Msa0948850:intron | 35.0% |
| CTCTACTTCCCTATGAAAAA+GGG | - | chr6_3:33848425-33848444 | None:intergenic | 35.0% | |
| TACTTCATAAGGCAATAGCA+TGG | + | chr6_3:33848782-33848801 | Msa0948850:intron | 35.0% | |
| AATGATATCATGAGTGGTGT+TGG | - | chr6_3:33848811-33848830 | None:intergenic | 35.0% | |
| TGCATGTTAGTGACATCAAA+AGG | - | chr6_3:33848996-33849015 | None:intergenic | 35.0% | |
| TATTCTGGTGTATACCAAGA+AGG | + | chr6_3:33849043-33849062 | Msa0948850:CDS | 35.0% | |
| ACATTATGAAACCTCCTTCT+TGG | - | chr6_3:33849060-33849079 | None:intergenic | 35.0% | |
| ATAATGTACATGTGATTGGC+AGG | + | chr6_3:33849073-33849092 | Msa0948850:CDS | 35.0% | |
| TAATGTACATGTGATTGGCA+GGG | + | chr6_3:33849074-33849093 | Msa0948850:CDS | 35.0% | |
| GGACCTTACATATTCACTTT+AGG | + | chr6_3:33849106-33849125 | Msa0948850:intron | 35.0% | |
| GTGCCTAAAGTGAATATGTA+AGG | - | chr6_3:33849112-33849131 | None:intergenic | 35.0% | |
| TTCCTTTCTCATTTGTTTCC+AGG | + | chr6_3:33849390-33849409 | Msa0948850:intron | 35.0% | |
| CAAGTGAAAAATTAGGAGGA+AGG | - | chr6_3:33849517-33849536 | None:intergenic | 35.0% | |
| ! | TCCTCCTAATTTTTCACTTG+TGG | + | chr6_3:33849517-33849536 | Msa0948850:intron | 35.0% |
| ! | CCTCCTAATTTTTCACTTGT+GGG | + | chr6_3:33849518-33849537 | Msa0948850:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | + | chr6_3:33849519-33849538 | Msa0948850:intron | 35.0% |
| GACAGTAGACACTATGTTAT+TGG | - | chr6_3:33849659-33849678 | None:intergenic | 35.0% | |
| TGTAGAATACGAATCAGATC+AGG | - | chr6_3:33849739-33849758 | None:intergenic | 35.0% | |
| !! | CAACTGCTAATTTTGACACA+TGG | + | chr6_3:33849781-33849800 | Msa0948850:intron | 35.0% |
| CGAACTTGTATATTCACAGA+AGG | + | chr6_3:33849874-33849893 | Msa0948850:CDS | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | - | chr6_3:33849971-33849990 | None:intergenic | 35.0% | |
| !! | CTTCATTTTGGTACTGTACG+TGG | + | chr6_3:33846950-33846969 | Msa0948850:five_prime_UTR | 40.0% |
| ! | CTCTCTCTGTCTCTTCATTT+TGG | + | chr6_3:33847027-33847046 | Msa0948850:five_prime_UTR | 40.0% |
| TGAAAAGAGGAGAGATGAAC+TGG | - | chr6_3:33847114-33847133 | None:intergenic | 40.0% | |
| ! | AATTGGCTTACTCTGACAAG+AGG | - | chr6_3:33847172-33847191 | None:intergenic | 40.0% |
| TGAGAGATTGGTGAGTGAAT+TGG | - | chr6_3:33847189-33847208 | None:intergenic | 40.0% | |
| TAGGAGAAGGAATGAGAGAT+TGG | - | chr6_3:33847201-33847220 | None:intergenic | 40.0% | |
| ! | AGGGTGTCAGAATTGAGAAT+TGG | + | chr6_3:33847291-33847310 | Msa0948850:intron | 40.0% |
| GTGTCGTGTAGAATTGTTTG+TGG | + | chr6_3:33847472-33847491 | Msa0948850:intron | 40.0% | |
| CACATGGAGATAGCATATGT+AGG | - | chr6_3:33847582-33847601 | None:intergenic | 40.0% | |
| GACTCTACAAGTGCATAGTT+TGG | - | chr6_3:33848154-33848173 | None:intergenic | 40.0% | |
| TGCACTTGTAGAGTCAAGAT+AGG | + | chr6_3:33848159-33848178 | Msa0948850:intron | 40.0% | |
| !! | AGAAAGTATCACATGCTGAG+AGG | - | chr6_3:33848215-33848234 | None:intergenic | 40.0% |
| ATATGAGAGGCTGCATTCAA+AGG | - | chr6_3:33848245-33848264 | None:intergenic | 40.0% | |
| CCTCTACTTCCCTATGAAAA+AGG | - | chr6_3:33848426-33848445 | None:intergenic | 40.0% | |
| !! | CCTTTTTCATAGGGAAGTAG+AGG | + | chr6_3:33848423-33848442 | Msa0948850:intron | 40.0% |
| ! | TTTTCATAGGGAAGTAGAGG+AGG | + | chr6_3:33848426-33848445 | Msa0948850:intron | 40.0% |
| CACGCACTAGATAGATAGTT+AGG | - | chr6_3:33848645-33848664 | None:intergenic | 40.0% | |
| TGCATTGAAAGAGATATGGC+AGG | + | chr6_3:33848919-33848938 | Msa0948850:intron | 40.0% | |
| GCATTGAAAGAGATATGGCA+GGG | + | chr6_3:33848920-33848939 | Msa0948850:intron | 40.0% | |
| ! | TGATTGGCAGGGTATCATAA+TGG | + | chr6_3:33849085-33849104 | Msa0948850:intron | 40.0% |
| GACCTGGAAACAAATGAGAA+AGG | - | chr6_3:33849395-33849414 | None:intergenic | 40.0% | |
| CATTTGTTTCCAGGTCTCAA+AGG | + | chr6_3:33849399-33849418 | Msa0948850:intron | 40.0% | |
| TAAGCAATGGTACATACGTG+TGG | - | chr6_3:33849462-33849481 | None:intergenic | 40.0% | |
| CCCACAAGTGAAAAATTAGG+AGG | - | chr6_3:33849521-33849540 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | - | chr6_3:33849524-33849543 | None:intergenic | 40.0% | |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | + | chr6_3:33849962-33849981 | Msa0948850:CDS | 40.0% |
| TGCTCTTGTCATTGCTAAAG+AGG | + | chr6_3:33849996-33850015 | Msa0948850:CDS | 40.0% | |
| ATCTCCCTCACGATCTTCTT+CGG | + | chr6_3:33846890-33846909 | Msa0948850:five_prime_UTR | 45.0% | |
| TTCACCGAAGAAGATCGTGA+GGG | - | chr6_3:33846897-33846916 | None:intergenic | 45.0% | |
| TTTCACCGAAGAAGATCGTG+AGG | - | chr6_3:33846898-33846917 | None:intergenic | 45.0% | |
| AGATCTAGACCAGATCGTGA+GGG | - | chr6_3:33846928-33846947 | None:intergenic | 45.0% | |
| !! | CATTTTGGTACTGTACGTGG+TGG | + | chr6_3:33846953-33846972 | Msa0948850:five_prime_UTR | 45.0% |
| ! | ACGTGGTGGTGAAAATGCTT+TGG | + | chr6_3:33846967-33846986 | Msa0948850:five_prime_UTR | 45.0% |
| ! | TGGTGGTGAAAATGCTTTGG+TGG | + | chr6_3:33846970-33846989 | Msa0948850:five_prime_UTR | 45.0% |
| TGGTGAAAATGCTTTGGTGG+TGG | + | chr6_3:33846973-33846992 | Msa0948850:five_prime_UTR | 45.0% | |
| !! | GAGGATGAGTTGGTGAAAAG+AGG | - | chr6_3:33847127-33847146 | None:intergenic | 45.0% |
| GAACTGACATGAGGATGAGT+TGG | - | chr6_3:33847137-33847156 | None:intergenic | 45.0% | |
| GTTGACTAGTACCATGCTCA+AGG | + | chr6_3:33847852-33847871 | Msa0948850:intron | 45.0% | |
| AGAACATTGCACCTTGAGCA+TGG | - | chr6_3:33847866-33847885 | None:intergenic | 45.0% | |
| TCTATCTAGTGCGTGTGTCT+TGG | + | chr6_3:33848650-33848669 | Msa0948850:intron | 45.0% | |
| TCTGGTGTATACCAAGAAGG+AGG | + | chr6_3:33849046-33849065 | Msa0948850:CDS | 45.0% | |
| TGTTTCCAGGTCTCAAAGGA+AGG | + | chr6_3:33849403-33849422 | Msa0948850:intron | 45.0% | |
| GTTTCCAGGTCTCAAAGGAA+GGG | + | chr6_3:33849404-33849423 | Msa0948850:intron | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | + | chr6_3:33849888-33849907 | Msa0948850:CDS | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | + | chr6_3:33849894-33849913 | Msa0948850:CDS | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | - | chr6_3:33849904-33849923 | None:intergenic | 45.0% | |
| TTTGCACGCGAAAGATCTTC+CGG | - | chr6_3:33849916-33849935 | None:intergenic | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | + | chr6_3:33849945-33849964 | Msa0948850:CDS | 45.0% | |
| GAGGGAGATGGAAGATGCAA+AGG | - | chr6_3:33846879-33846898 | None:intergenic | 50.0% | |
| GAAGAAGATCGTGAGGGAGA+TGG | - | chr6_3:33846891-33846910 | None:intergenic | 50.0% | |
| AAACCTTCTCCCTCACGATC+TGG | + | chr6_3:33846916-33846935 | Msa0948850:five_prime_UTR | 50.0% | |
| GAGATCTAGACCAGATCGTG+AGG | - | chr6_3:33846929-33846948 | None:intergenic | 50.0% | |
| GAGAGTCGAGAACTGACATG+AGG | - | chr6_3:33847146-33847165 | None:intergenic | 50.0% | |
| TCATAGGGAAGTAGAGGAGG+AGG | + | chr6_3:33848429-33848448 | Msa0948850:intron | 50.0% | |
| CATAGGGAAGTAGAGGAGGA+GGG | + | chr6_3:33848430-33848449 | Msa0948850:intron | 50.0% | |
| !! | TAGTCCCTTCCTTTGAGACC+TGG | - | chr6_3:33849411-33849430 | None:intergenic | 50.0% |
| GCAATGACAAGAGCAGTTGC+AGG | - | chr6_3:33849991-33850010 | None:intergenic | 50.0% | |
| AGACCAGATCGTGAGGGAGA+AGG | - | chr6_3:33846922-33846941 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 33846846 | 33850145 | 33846846 | ID=Msa0948850;Name=Msa0948850 |
| chr6_3 | mRNA | 33846846 | 33850145 | 33846846 | ID=Msa0948850-mRNA-1;Parent=Msa0948850;Name=Msa0948850-mRNA-1;_AED=0.37;_eAED=0.37;_QI=301|1|1|1|0.33|0.5|4|113|103 |
| chr6_3 | exon | 33846846 | 33847180 | 33846846 | ID=Msa0948850-mRNA-1:exon:8696;Parent=Msa0948850-mRNA-1 |
| chr6_3 | exon | 33849037 | 33849095 | 33849037 | ID=Msa0948850-mRNA-1:exon:8697;Parent=Msa0948850-mRNA-1 |
| chr6_3 | exon | 33849412 | 33849464 | 33849412 | ID=Msa0948850-mRNA-1:exon:8698;Parent=Msa0948850-mRNA-1 |
| chr6_3 | exon | 33849867 | 33850145 | 33849867 | ID=Msa0948850-mRNA-1:exon:8699;Parent=Msa0948850-mRNA-1 |
| chr6_3 | five_prime_UTR | 33846846 | 33847146 | 33846846 | ID=Msa0948850-mRNA-1:five_prime_utr;Parent=Msa0948850-mRNA-1 |
| chr6_3 | CDS | 33847147 | 33847180 | 33847147 | ID=Msa0948850-mRNA-1:cds;Parent=Msa0948850-mRNA-1 |
| chr6_3 | CDS | 33849037 | 33849095 | 33849037 | ID=Msa0948850-mRNA-1:cds;Parent=Msa0948850-mRNA-1 |
| chr6_3 | CDS | 33849412 | 33849464 | 33849412 | ID=Msa0948850-mRNA-1:cds;Parent=Msa0948850-mRNA-1 |
| chr6_3 | CDS | 33849867 | 33850032 | 33849867 | ID=Msa0948850-mRNA-1:cds;Parent=Msa0948850-mRNA-1 |
| chr6_3 | three_prime_UTR | 33850033 | 33850145 | 33850033 | ID=Msa0948850-mRNA-1:three_prime_utr;Parent=Msa0948850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
