AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0950000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950000 MtrunA17_Chr6g0465411 95.876 194 7 1 1 193 1 194 2.48e-137 381
Msa0950000 MtrunA17_Chr1g0201111 50.000 178 84 2 19 192 2 178 1.23e-60 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950000 AT1G71780.1 60.847 189 60 4 6 193 22 197 1.01e-75 226

Find 67 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTTGCTCATCCATTC+TGG 0.210616 6_3:+37423616 None:intergenic
TCTCTAAATTGAAATTCTTT+TGG 0.253387 6_3:-37423422 Msa0950000:three_prime_UTR
AAGAAAGGAATCGGACATTT+TGG 0.255089 6_3:-37428882 Msa0950000:five_prime_UTR
TGCGGTGTCGCCGTCGTTAC+CGG 0.272903 6_3:+37428683 None:intergenic
TCGAAACTATTACTATCATT+AGG 0.295309 6_3:+37423647 None:intergenic
GTGTTCGTGGTGTTCCTGTT+AGG 0.311079 6_3:-37428485 Msa0950000:CDS
GTTAGTTATATCATCATAAA+TGG 0.312204 6_3:-37423397 Msa0950000:three_prime_UTR
GAACTTCTCTCCATGGGTCT+TGG 0.328731 6_3:-37423581 Msa0950000:CDS
GGTGCTGTTGTTTATCTTGA+TGG 0.329828 6_3:-37428420 Msa0950000:CDS
CGAAACTATTACTATCATTA+GGG 0.344272 6_3:+37423648 None:intergenic
CTCCTGGGAACTTCTCTCCA+TGG 0.357592 6_3:-37423588 Msa0950000:CDS
TCCTGGGAACTTCTCTCCAT+GGG 0.376489 6_3:-37423587 Msa0950000:CDS
TTCCTAGGATTAAACCTAAC+AGG 0.389199 6_3:+37428471 None:intergenic
AAGTAGAGATCCATTTATTC+CGG 0.389969 6_3:-37428635 Msa0950000:CDS
AAACATCAATCATTATGAAT+TGG 0.390958 6_3:+37423211 None:intergenic
TTCGATTTCGGAAGTGAGTA+AGG 0.394764 6_3:+37428731 None:intergenic
ATCATCGTCGAATCAAATAA+TGG 0.397135 6_3:-37428775 Msa0950000:exon
GTTGCTTCTTTGAAACATAC+AGG 0.398262 6_3:-37423264 Msa0950000:three_prime_UTR
CTACTTCCGGTACCTTTGTT+CGG 0.403909 6_3:+37428652 None:intergenic
CGATTACCAGGATCTTGATT+GGG 0.405219 6_3:-37423684 Msa0950000:CDS
TAAATCAGCGTTGGGAGGTT+GGG 0.413572 6_3:-37428586 Msa0950000:CDS
CCGATTACCAGGATCTTGAT+TGG 0.418886 6_3:-37423685 Msa0950000:CDS
GAAGAAATCACCACCGCAAC+CGG 0.422292 6_3:-37428702 Msa0950000:CDS
CATTTATTCCGGCAAGGAAA+AGG 0.432348 6_3:-37428624 Msa0950000:CDS
CCAATCAAGATCCTGGTAAT+CGG 0.443266 6_3:+37423685 None:intergenic
CTTTGTTCGGACATGCTTTG+CGG 0.448560 6_3:+37428665 None:intergenic
GATTGAAGTTTGCGCAAGAA+AGG 0.450294 6_3:-37428897 Msa0950000:five_prime_UTR
AATAAATGGATCTCTACTTC+CGG 0.450385 6_3:+37428639 None:intergenic
AACAAGAGCATGTATCAAAC+AGG 0.453247 6_3:+37423338 None:intergenic
ACCCATGGAGAGAAGTTCCC+AGG 0.463649 6_3:+37423586 None:intergenic
CTTTGTTCTCTTTCTCATGC+GGG 0.466577 6_3:+37423537 None:intergenic
AAAACAGACCTTCCATTCCT+AGG 0.466614 6_3:+37428456 None:intergenic
AGCGTTGGGAGGTTGGGAAC+AGG 0.477228 6_3:-37428580 Msa0950000:CDS
CCTTTGTTCTCTTTCTCATG+CGG 0.479369 6_3:+37423536 None:intergenic
GTCGCCGTCGTTACCGGTTG+CGG 0.484980 6_3:+37428689 None:intergenic
TTCCTGTTAGGTTTAATCCT+AGG 0.496073 6_3:-37428473 Msa0950000:CDS
TTAAATCAGCGTTGGGAGGT+TGG 0.505572 6_3:-37428587 Msa0950000:CDS
AGTTTGCGCAAGAAAGGAAT+CGG 0.507139 6_3:-37428891 Msa0950000:five_prime_UTR
GTTAGGTTTAATCCTAGGAA+TGG 0.509296 6_3:-37428468 Msa0950000:CDS
GTGGTGTTTAAATCAGCGTT+GGG 0.513647 6_3:-37428594 Msa0950000:CDS
CACTAATTAAACCGATTACC+AGG 0.516040 6_3:-37423696 Msa0950000:CDS
AATCATCAGACACGTGTTCG+TGG 0.521818 6_3:-37428498 Msa0950000:CDS
TGCTACCCCAATCAAGATCC+TGG 0.527300 6_3:+37423678 None:intergenic
TGACATAACTGGTGTAAACA+TGG 0.532899 6_3:+37423175 None:intergenic
GCTCTTGTTCAACAGAGTAA+AGG 0.537430 6_3:-37423324 Msa0950000:three_prime_UTR
GCTGATTTAAACACCACAAT+CGG 0.540207 6_3:+37428600 None:intergenic
AATGATAGTAATAGTTTCGA+GGG 0.540775 6_3:-37423644 Msa0950000:CDS
GAACAGGATCAGCTTGAGGT+TGG 0.555882 6_3:-37428564 Msa0950000:CDS
TGTGGTGTTTAAATCAGCGT+TGG 0.560050 6_3:-37428595 Msa0950000:CDS
GGTTTAATCCTAGGAATGGA+AGG 0.569067 6_3:-37428464 Msa0950000:CDS
TTATCTTGATGGAGAACCCA+AGG 0.571503 6_3:-37428409 Msa0950000:intron
TAATGATAGTAATAGTTTCG+AGG 0.576113 6_3:-37423645 Msa0950000:CDS
GCATGTCCGAACAAAGGTAC+CGG 0.584813 6_3:-37428658 Msa0950000:CDS
GAGATCCATTTATTCCGGCA+AGG 0.593898 6_3:-37428630 Msa0950000:CDS
GGTGATATTCTTGAGAAACA+TGG 0.594343 6_3:-37428543 Msa0950000:CDS
TCGATTTCGGAAGTGAGTAA+GGG 0.600648 6_3:+37428732 None:intergenic
GCCGTCGTTACCGGTTGCGG+TGG 0.600924 6_3:+37428692 None:intergenic
TTGGGAACAGGATCAGCTTG+AGG 0.605771 6_3:-37428568 Msa0950000:CDS
TTTCGAGGGAAAGTCCAGAA+TGG 0.605851 6_3:-37423630 Msa0950000:CDS
CGCAAAGCATGTCCGAACAA+AGG 0.608336 6_3:-37428664 Msa0950000:CDS
GATTACCAGGATCTTGATTG+GGG 0.611764 6_3:-37423683 Msa0950000:CDS
AACAAGACACAGTGACAGAG+TGG 0.612258 6_3:-37428819 Msa0950000:five_prime_UTR
ACTACGCAAGCCAAGACCCA+TGG 0.615167 6_3:+37423571 None:intergenic
GTGTTTAAATCAGCGTTGGG+AGG 0.631179 6_3:-37428591 Msa0950000:CDS
GCAAGGAAAAGGACCGATTG+TGG 0.632906 6_3:-37428613 Msa0950000:CDS
ACCACCGCAACCGGTAACGA+CGG 0.642588 6_3:-37428693 Msa0950000:CDS
CCGCATGAGAAAGAGAACAA+AGG 0.682254 6_3:-37423536 Msa0950000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAAAAAAAAAAAA+AGG + chr6_3:37423727-37423746 None:intergenic 0.0%
!! ACTATCATTAAAAAATTATT+TGG - chr6_3:37424319-37424338 Msa0950000:intron 10.0%
!! CTATCATTAAAAAATTATTT+GGG - chr6_3:37424320-37424339 Msa0950000:intron 10.0%
!! TATCATTAAAAAATTATTTG+GGG - chr6_3:37424321-37424340 Msa0950000:intron 10.0%
!!! AGAAGTTTTTTTTTTAAAAA+AGG + chr6_3:37425730-37425749 None:intergenic 10.0%
!!! ATTAATTTGTGTTTTTAAGT+TGG - chr6_3:37423756-37423775 Msa0950000:intron 15.0%
!!! ATTACTTCTAAAAATTTGTT+TGG - chr6_3:37424092-37424111 Msa0950000:intron 15.0%
!! TGTTAATAATTTGAGAAATT+TGG - chr6_3:37424166-37424185 Msa0950000:intron 15.0%
!! CAATAATCATTAATTATGAT+AGG + chr6_3:37426002-37426021 None:intergenic 15.0%
!! TCATAATTAATGATTATTGT+TGG - chr6_3:37426003-37426022 Msa0950000:intron 15.0%
!! AATTATTCTAATAGATATCT+TGG + chr6_3:37426759-37426778 None:intergenic 15.0%
!!! TATATTCTTATTTACTTCAT+TGG - chr6_3:37426994-37427013 Msa0950000:intron 15.0%
!! AAAAAATTAATATCAACTCG+AGG - chr6_3:37423170-37423189 Msa0950000:three_prime_UTR 20.0%
!!! TTCTAAAAATTTGTTTGGTA+AGG - chr6_3:37424097-37424116 Msa0950000:intron 20.0%
!!! CATGTGTAAATTTTATTCTT+AGG - chr6_3:37424389-37424408 Msa0950000:intron 20.0%
!! CATGTATCAAACAATTTATT+AGG - chr6_3:37424550-37424569 Msa0950000:intron 20.0%
!! TTTCCATTTATACATTATGT+TGG - chr6_3:37425044-37425063 Msa0950000:intron 20.0%
!!! ATACAACATTGTCATTTTTA+AGG - chr6_3:37425346-37425365 Msa0950000:intron 20.0%
!! GAAGATAATAACTAAGTAAT+AGG + chr6_3:37425455-37425474 None:intergenic 20.0%
!! TTCATAATTGTTGAAATTTG+GGG + chr6_3:37426208-37426227 None:intergenic 20.0%
!! GTTCATAATTGTTGAAATTT+GGG + chr6_3:37426209-37426228 None:intergenic 20.0%
!! AGTTCATAATTGTTGAAATT+TGG + chr6_3:37426210-37426229 None:intergenic 20.0%
!!! TAGTTTAATGTTTGATTTAG+AGG - chr6_3:37426230-37426249 Msa0950000:intron 20.0%
!!! TATACTTTTTACCTATTAGT+AGG - chr6_3:37426303-37426322 Msa0950000:intron 20.0%
!! TAAATATTAACCCCTTTATA+GGG + chr6_3:37426456-37426475 None:intergenic 20.0%
!! ATAAATATTAACCCCTTTAT+AGG + chr6_3:37426457-37426476 None:intergenic 20.0%
!!! TTTATGTACTCTTTTGTATA+AGG - chr6_3:37426472-37426491 Msa0950000:intron 20.0%
!! AATGATTAGTGTAATATGAT+TGG + chr6_3:37426504-37426523 None:intergenic 20.0%
!!! TTGATTTTTTTTAGACTAGT+TGG - chr6_3:37426664-37426683 Msa0950000:intron 20.0%
!! ATCTAATAGATTCAAATTGA+TGG + chr6_3:37426884-37426903 None:intergenic 20.0%
!!! TGCAACAGTTATATTTTAAA+GGG - chr6_3:37427222-37427241 Msa0950000:intron 20.0%
!!! TATATTTTAAAGGGTGTTTT+TGG - chr6_3:37427231-37427250 Msa0950000:intron 20.0%
!!! TTTAATAAAGCATTGTTTAG+TGG + chr6_3:37427360-37427379 None:intergenic 20.0%
!! ATAATTGACCAACTTAAAAA+AGG + chr6_3:37427528-37427547 None:intergenic 20.0%
!! TCAATTATTAAATTCTGTCA+AGG - chr6_3:37427540-37427559 Msa0950000:intron 20.0%
!! GAATATTGAAAAGAAGAAAT+GGG + chr6_3:37427774-37427793 None:intergenic 20.0%
!!! ATTTCTTCTTTTCAATATTC+CGG - chr6_3:37427774-37427793 Msa0950000:intron 20.0%
!!! TGTTTTCTTTTCATCAAAAT+TGG - chr6_3:37427828-37427847 Msa0950000:intron 20.0%
!!! TCTCTAAATTGAAATTCTTT+TGG - chr6_3:37428679-37428698 Msa0950000:CDS 20.0%
!! GTTAGTTATATCATCATAAA+TGG - chr6_3:37428704-37428723 Msa0950000:CDS 20.0%
!! AAACATCAATCATTATGAAT+TGG + chr6_3:37428893-37428912 None:intergenic 20.0%
!! TTCTTTTATATGTTGTGTTG+TGG + chr6_3:37423250-37423269 None:intergenic 25.0%
! AAAAAGGAAAAACAAACCTT+GGG + chr6_3:37423711-37423730 None:intergenic 25.0%
! AAAAAAGGAAAAACAAACCT+TGG + chr6_3:37423712-37423731 None:intergenic 25.0%
!! AATGTTTGTGATTTTGTTGA+AGG - chr6_3:37423790-37423809 Msa0950000:intron 25.0%
!! ATGTTTGTGATTTTGTTGAA+GGG - chr6_3:37423791-37423810 Msa0950000:intron 25.0%
!! TTTGTTTGTGTTTTCTTTGT+TGG - chr6_3:37423830-37423849 Msa0950000:intron 25.0%
!!! TTTTCTTTGTTGGTAATCTA+GGG - chr6_3:37423840-37423859 Msa0950000:intron 25.0%
! AACAAACATAACCAATTGAT+TGG + chr6_3:37423973-37423992 None:intergenic 25.0%
! ATTCTTAGGCTAATAATATC+TGG - chr6_3:37424403-37424422 Msa0950000:intron 25.0%
! TTCTTAGGCTAATAATATCT+GGG - chr6_3:37424404-37424423 Msa0950000:intron 25.0%
!!! ATTCTCTAGCCTATTTTTAT+AGG - chr6_3:37424467-37424486 Msa0950000:intron 25.0%
! ACAAGGATTCCTATAAAAAT+AGG + chr6_3:37424479-37424498 None:intergenic 25.0%
!! TGTTTGTTCAGAATTTTACA+AGG + chr6_3:37424496-37424515 None:intergenic 25.0%
!! AAACACACTATAATGGAAAT+AGG - chr6_3:37424511-37424530 Msa0950000:intron 25.0%
! ACAATTTATTAGGCTCATAA+TGG - chr6_3:37424560-37424579 Msa0950000:intron 25.0%
!! GTGATATGTTATTTGGTAAA+AGG + chr6_3:37424701-37424720 None:intergenic 25.0%
! TTGTTACGTGATATGTTATT+TGG + chr6_3:37424708-37424727 None:intergenic 25.0%
!! TAGTTTGGTTTATAGTGTTA+GGG - chr6_3:37424772-37424791 Msa0950000:intron 25.0%
! GTTCCAACATAATGTATAAA+TGG + chr6_3:37425050-37425069 None:intergenic 25.0%
! ACTAATTTAGTAATACGAAG+AGG + chr6_3:37425078-37425097 None:intergenic 25.0%
! GGTAAAGAAAACATGATATT+AGG + chr6_3:37425102-37425121 None:intergenic 25.0%
! ATAATGTTATGATGAAAGAG+TGG + chr6_3:37425268-37425287 None:intergenic 25.0%
!! TATTTCTTTCCTTTTCTATC+TGG - chr6_3:37425298-37425317 Msa0950000:intron 25.0%
!!! TCATTATTGTCCTACTTTTA+GGG - chr6_3:37425321-37425340 Msa0950000:intron 25.0%
! GTAATAGGAAAACTAATCTT+AGG + chr6_3:37425440-37425459 None:intergenic 25.0%
! TTATTATCTTCAACGTTTGT+AGG - chr6_3:37425464-37425483 Msa0950000:intron 25.0%
!! CTATATTTCTAATTCTTTGC+TGG - chr6_3:37425649-37425668 Msa0950000:intron 25.0%
!! CATGATTTTCCTATTTATTC+AGG - chr6_3:37426414-37426433 Msa0950000:intron 25.0%
! ATATTTCTTCAGTTTGGTAT+TGG + chr6_3:37426567-37426586 None:intergenic 25.0%
! ATACCAAACTGAAGAAATAT+TGG - chr6_3:37426567-37426586 Msa0950000:intron 25.0%
! TACCAAACTGAAGAAATATT+GGG - chr6_3:37426568-37426587 Msa0950000:intron 25.0%
!! ATCTTATTGACTAATTGTTC+CGG - chr6_3:37426715-37426734 Msa0950000:intron 25.0%
! AAATCTTTGCAAAGCTTAAA+TGG - chr6_3:37426833-37426852 Msa0950000:intron 25.0%
! AATCTTTGCAAAGCTTAAAT+GGG - chr6_3:37426834-37426853 Msa0950000:intron 25.0%
!!! GCATCAAGTTATGTTTTAAA+CGG - chr6_3:37426939-37426958 Msa0950000:intron 25.0%
!! AATATATGATGCTTGTTACA+AGG + chr6_3:37426980-37426999 None:intergenic 25.0%
!! TCTGGTTTCCTATATAAAAA+AGG - chr6_3:37427040-37427059 Msa0950000:intron 25.0%
!!! GTGGATTTCCTTTTTTATAT+AGG + chr6_3:37427051-37427070 None:intergenic 25.0%
! TATAAAAAAGGAAATCCACA+TGG - chr6_3:37427052-37427071 Msa0950000:intron 25.0%
! AACAAAAAATTCTCCTGATA+CGG + chr6_3:37427120-37427139 None:intergenic 25.0%
!!! AGAATTTAGAGTCTTTGTTT+TGG - chr6_3:37427148-37427167 Msa0950000:intron 25.0%
! AAACATCCTAAAATAAACCT+TGG - chr6_3:37427192-37427211 Msa0950000:intron 25.0%
! TAAAATATAACTGTTGCAGA+GGG + chr6_3:37427220-37427239 None:intergenic 25.0%
! TTAAAATATAACTGTTGCAG+AGG + chr6_3:37427221-37427240 None:intergenic 25.0%
!!! CTGCAACAGTTATATTTTAA+AGG - chr6_3:37427221-37427240 Msa0950000:intron 25.0%
! TAAGATAAAATGTGATGCTT+CGG + chr6_3:37427432-37427451 None:intergenic 25.0%
!!! AAAACTTTTCGAGAAAAATC+AGG - chr6_3:37427451-37427470 Msa0950000:intron 25.0%
! TTAGTTATGTTTCAAACAGT+GGG + chr6_3:37427568-37427587 None:intergenic 25.0%
! GGAATATTGAAAAGAAGAAA+TGG + chr6_3:37427775-37427794 None:intergenic 25.0%
! TGAGAAAAACATTGGTATAT+AGG + chr6_3:37428119-37428138 None:intergenic 25.0%
!! GTAGTTTCTAGAAGTTTAAT+CGG + chr6_3:37428337-37428356 None:intergenic 25.0%
! CGAAACTATTACTATCATTA+GGG + chr6_3:37428456-37428475 None:intergenic 25.0%
! TCGAAACTATTACTATCATT+AGG + chr6_3:37428457-37428476 None:intergenic 25.0%
! TAATGATAGTAATAGTTTCG+AGG - chr6_3:37428456-37428475 Msa0950000:CDS 25.0%
! AATGATAGTAATAGTTTCGA+GGG - chr6_3:37428457-37428476 Msa0950000:CDS 25.0%
ATCATCGTCGAATCAAATAA+TGG - chr6_3:37423326-37423345 Msa0950000:three_prime_UTR 30.0%
TTCTTCTTCTTCTTCGATTT+CGG + chr6_3:37423385-37423404 None:intergenic 30.0%
AATAAATGGATCTCTACTTC+CGG + chr6_3:37423465-37423484 None:intergenic 30.0%
AAGTAGAGATCCATTTATTC+CGG - chr6_3:37423466-37423485 Msa0950000:three_prime_UTR 30.0%
!!! AAGGTCTGTTTTGACTTATA+GGG - chr6_3:37423656-37423675 Msa0950000:CDS 30.0%
! TGATTTTGTTGAAGGGTAAT+TGG - chr6_3:37423798-37423817 Msa0950000:intron 30.0%
! TTGAAGGGTAATTGGTAATT+TGG - chr6_3:37423806-37423825 Msa0950000:intron 30.0%
!!! GTTTTCTTTGTTGGTAATCT+AGG - chr6_3:37423839-37423858 Msa0950000:intron 30.0%
! ACCATTTTAAGCCAATCAAT+TGG - chr6_3:37423959-37423978 Msa0950000:intron 30.0%
!! ACCAATTGATTGGCTTAAAA+TGG + chr6_3:37423963-37423982 None:intergenic 30.0%
CTTGAAACAAAAGTCATCTA+AGG + chr6_3:37424017-37424036 None:intergenic 30.0%
!! CTTAGATGACTTTTGTTTCA+AGG - chr6_3:37424015-37424034 Msa0950000:intron 30.0%
CTATGTAGCATTAACACTTT+AGG + chr6_3:37424273-37424292 None:intergenic 30.0%
! CTAAAGTGTTAATGCTACAT+AGG - chr6_3:37424271-37424290 Msa0950000:intron 30.0%
! TTTTAAATTCCCACGTTAGA+GGG + chr6_3:37424360-37424379 None:intergenic 30.0%
! ATTTTAAATTCCCACGTTAG+AGG + chr6_3:37424361-37424380 None:intergenic 30.0%
TCTGAACAAACACACTATAA+TGG - chr6_3:37424504-37424523 Msa0950000:intron 30.0%
AGAACCAATATTGTTAATCG+CGG - chr6_3:37424600-37424619 Msa0950000:intron 30.0%
! TGATTTGTCCAAAATCTACT+TGG - chr6_3:37424731-37424750 Msa0950000:intron 30.0%
! GTAGTTTGGTTTATAGTGTT+AGG - chr6_3:37424771-37424790 Msa0950000:intron 30.0%
! CACAATAAGAGTATATCGAA+TGG + chr6_3:37425144-37425163 None:intergenic 30.0%
CATTCGATATACTCTTATTG+TGG - chr6_3:37425142-37425161 Msa0950000:intron 30.0%
TAAAGCATGATCATGATAGT+TGG - chr6_3:37425197-37425216 Msa0950000:intron 30.0%
AGGATAGAAATCATTACAAC+GGG + chr6_3:37425233-37425252 None:intergenic 30.0%
GAGGATAGAAATCATTACAA+CGG + chr6_3:37425234-37425253 None:intergenic 30.0%
CAATAATGACCAGATAGAAA+AGG + chr6_3:37425310-37425329 None:intergenic 30.0%
!! GTCATTATTGTCCTACTTTT+AGG - chr6_3:37425320-37425339 Msa0950000:intron 30.0%
ATTTCTAATTCTTTGCTGGT+TGG - chr6_3:37425653-37425672 Msa0950000:intron 30.0%
CTAACTCATCCTTACAAAAA+CGG + chr6_3:37426184-37426203 None:intergenic 30.0%
AATCGTAAGATCCTACTAAT+AGG + chr6_3:37426317-37426336 None:intergenic 30.0%
GGAACAAATCCTGAATAAAT+AGG + chr6_3:37426426-37426445 None:intergenic 30.0%
TTCCATGATATCCCTATAAA+GGG - chr6_3:37426442-37426461 Msa0950000:intron 30.0%
ACCAAACTGAAGAAATATTG+GGG - chr6_3:37426569-37426588 Msa0950000:intron 30.0%
ATCTTTGCAAAGCTTAAATG+GGG - chr6_3:37426835-37426854 Msa0950000:intron 30.0%
! ACATAACTTGATGCTTTTGA+GGG + chr6_3:37426933-37426952 None:intergenic 30.0%
! AACATAACTTGATGCTTTTG+AGG + chr6_3:37426934-37426953 None:intergenic 30.0%
AAAATATAACTGTTGCAGAG+GGG + chr6_3:37427219-37427238 None:intergenic 30.0%
AAGATAAAATGTGATGCTTC+GGG + chr6_3:37427431-37427450 None:intergenic 30.0%
ACCAACTTAAAAAAGGCTAT+TGG + chr6_3:37427521-37427540 None:intergenic 30.0%
GTTAGTTATGTTTCAAACAG+TGG + chr6_3:37427569-37427588 None:intergenic 30.0%
!! GAATAAATAACAGCTCTAGA+AGG + chr6_3:37427612-37427631 None:intergenic 30.0%
AAAAGAAAACATCAGCCTAT+GGG + chr6_3:37427819-37427838 None:intergenic 30.0%
! TCTTTTCATCAAAATTGGCT+TGG - chr6_3:37427833-37427852 Msa0950000:intron 30.0%
AATGAAAAATAGATTACCCC+AGG + chr6_3:37428236-37428255 None:intergenic 30.0%
! TCATTTTCCAGATTTTGTGA+AGG - chr6_3:37428251-37428270 Msa0950000:intron 30.0%
! TAAACTTCTAGAAACTACTG+TGG - chr6_3:37428339-37428358 Msa0950000:intron 30.0%
!!! CGCTTAAACTTTTATTTTGC+AGG - chr6_3:37428379-37428398 Msa0950000:intron 30.0%
! AAGAAAGGAATCGGACATTT+TGG - chr6_3:37423219-37423238 Msa0950000:three_prime_UTR 35.0%
! GCTGATTTAAACACCACAAT+CGG + chr6_3:37423504-37423523 None:intergenic 35.0%
GGTGATATTCTTGAGAAACA+TGG - chr6_3:37423558-37423577 Msa0950000:CDS 35.0%
TTCCTGTTAGGTTTAATCCT+AGG - chr6_3:37423628-37423647 Msa0950000:CDS 35.0%
TTCCTAGGATTAAACCTAAC+AGG + chr6_3:37423633-37423652 None:intergenic 35.0%
GTTAGGTTTAATCCTAGGAA+TGG - chr6_3:37423633-37423652 Msa0950000:CDS 35.0%
!!! GAAGGTCTGTTTTGACTTAT+AGG - chr6_3:37423655-37423674 Msa0950000:CDS 35.0%
!!! TCTGTTTTGACTTATAGGGA+TGG - chr6_3:37423660-37423679 Msa0950000:CDS 35.0%
! TAATCTAGGGTTCATTGGTT+GGG - chr6_3:37423853-37423872 Msa0950000:intron 35.0%
TATTGGACATCAACATGTGT+CGG - chr6_3:37424228-37424247 Msa0950000:intron 35.0%
!! AACACTTTAGGTTGAAGGTA+TGG + chr6_3:37424261-37424280 None:intergenic 35.0%
!! GCATTAACACTTTAGGTTGA+AGG + chr6_3:37424266-37424285 None:intergenic 35.0%
AAGTGTTAATGCTACATAGG+TGG - chr6_3:37424274-37424293 Msa0950000:intron 35.0%
GAATACGACATTCTCATGTT+TGG + chr6_3:37424451-37424470 None:intergenic 35.0%
TGATCCGCGATTAACAATAT+TGG + chr6_3:37424607-37424626 None:intergenic 35.0%
TGTGTTAGACCAACAATCTA+AGG - chr6_3:37424797-37424816 Msa0950000:intron 35.0%
GTGTTAGACCAACAATCTAA+GGG - chr6_3:37424798-37424817 Msa0950000:intron 35.0%
AATGGAAGGGTTTAACCAAA+TGG - chr6_3:37424867-37424886 Msa0950000:intron 35.0%
! GCTTTTCAGTTTTCACCATT+TGG + chr6_3:37424885-37424904 None:intergenic 35.0%
! TGGTGAAAACTGAAAAGCAT+TGG - chr6_3:37424887-37424906 Msa0950000:intron 35.0%
!! AACTGAAAAGCATTGGAGAA+AGG - chr6_3:37424894-37424913 Msa0950000:intron 35.0%
!! ACTGAAAAGCATTGGAGAAA+GGG - chr6_3:37424895-37424914 Msa0950000:intron 35.0%
TCGAATGGAGTAATCACATA+GGG + chr6_3:37425129-37425148 None:intergenic 35.0%
ATCGAATGGAGTAATCACAT+AGG + chr6_3:37425130-37425149 None:intergenic 35.0%
GGATAGAAATCATTACAACG+GGG + chr6_3:37425232-37425251 None:intergenic 35.0%
TGTTGTATAGCCCTAAAAGT+AGG + chr6_3:37425334-37425353 None:intergenic 35.0%
! TTAGAGCATCATAGTTTGTC+TGG - chr6_3:37425369-37425388 Msa0950000:intron 35.0%
!!! ACAGCACAGAAGCTTTATTT+TGG + chr6_3:37425528-37425547 None:intergenic 35.0%
TAAGATCGCACACAAGTAAT+TGG - chr6_3:37425600-37425619 Msa0950000:intron 35.0%
AAGATCGCACACAAGTAATT+GGG - chr6_3:37425601-37425620 Msa0950000:intron 35.0%
TATGATTGTAATCACAGGCA+GGG + chr6_3:37425802-37425821 None:intergenic 35.0%
GTGTGTATGATTGTAATCAC+AGG + chr6_3:37425807-37425826 None:intergenic 35.0%
! TTCTATTTCTTGCGATCATG+TGG - chr6_3:37425864-37425883 Msa0950000:intron 35.0%
TGGAAATTCTGCCTTTATTG+CGG - chr6_3:37426023-37426042 Msa0950000:intron 35.0%
!! TTTCATTGTGTTGGCTTTGA+GGG - chr6_3:37426105-37426124 Msa0950000:intron 35.0%
GAGTTCTATCTATCTGATGT+GGG + chr6_3:37426143-37426162 None:intergenic 35.0%
AGAGTTCTATCTATCTGATG+TGG + chr6_3:37426144-37426163 None:intergenic 35.0%
! CGTTTTTGTAAGGATGAGTT+AGG - chr6_3:37426182-37426201 Msa0950000:intron 35.0%
! GTCTTTTATAGATCAGGAGA+GGG + chr6_3:37426358-37426377 None:intergenic 35.0%
! AGTCTTTTATAGATCAGGAG+AGG + chr6_3:37426359-37426378 None:intergenic 35.0%
! TCGAGAGTCTTTTATAGATC+AGG + chr6_3:37426364-37426383 None:intergenic 35.0%
GTTCCATGATATCCCTATAA+AGG - chr6_3:37426441-37426460 Msa0950000:intron 35.0%
TCCATGATATCCCTATAAAG+GGG - chr6_3:37426443-37426462 Msa0950000:intron 35.0%
ACCCCAATATTTCTTCAGTT+TGG + chr6_3:37426573-37426592 None:intergenic 35.0%
! TAGACTAGTTGGTTGTTTGA+TGG - chr6_3:37426675-37426694 Msa0950000:intron 35.0%
TGTACAGAAAACATAACAGC+TGG + chr6_3:37426790-37426809 None:intergenic 35.0%
GCGAAGGCTATTAGAAAATA+TGG + chr6_3:37426862-37426881 None:intergenic 35.0%
!! TAGATTCAAATTGATGGCGA+AGG + chr6_3:37426878-37426897 None:intergenic 35.0%
CTCATTTAGATAGTCTGTTC+TGG - chr6_3:37427022-37427041 Msa0950000:intron 35.0%
ATACAAATGCAAAAGCCATG+TGG + chr6_3:37427070-37427089 None:intergenic 35.0%
AAATATAACTGTTGCAGAGG+GGG + chr6_3:37427218-37427237 None:intergenic 35.0%
!! CTTTTCGAGAAAAATCAGGT+AGG - chr6_3:37427455-37427474 Msa0950000:intron 35.0%
!!! GCCAATAGCCTTTTTTAAGT+TGG - chr6_3:37427517-37427536 Msa0950000:intron 35.0%
!! TCCTCTTTGTTTCGTTTTGA+AGG - chr6_3:37427630-37427649 Msa0950000:intron 35.0%
TCCTTCAAAACGAAACAAAG+AGG + chr6_3:37427634-37427653 None:intergenic 35.0%
!!! GTTTCGTTTTGAAGGATGAA+TGG - chr6_3:37427638-37427657 Msa0950000:intron 35.0%
! GTTGGTCTACTAACATATGT+TGG + chr6_3:37427680-37427699 None:intergenic 35.0%
TGGAGCTTATACATGAACAT+AGG + chr6_3:37427737-37427756 None:intergenic 35.0%
GAAAAGAAAACATCAGCCTA+TGG + chr6_3:37427820-37427839 None:intergenic 35.0%
TTGGCCCATTAAATAGCAAT+CGG - chr6_3:37427852-37427871 Msa0950000:intron 35.0%
!! AGTCCCGATTGCTATTTAAT+GGG + chr6_3:37427859-37427878 None:intergenic 35.0%
!! AAGTCCCGATTGCTATTTAA+TGG + chr6_3:37427860-37427879 None:intergenic 35.0%
CAGAGTTTACAAGGAAGTTT+GGG + chr6_3:37427980-37427999 None:intergenic 35.0%
! ACCAATGTTTTTCTCAGATG+TGG - chr6_3:37428123-37428142 Msa0950000:intron 35.0%
ACCACATCTGAGAAAAACAT+TGG + chr6_3:37428127-37428146 None:intergenic 35.0%
TCTGAATCCTTCACAAAATC+TGG + chr6_3:37428261-37428280 None:intergenic 35.0%
CACTAATTAAACCGATTACC+AGG - chr6_3:37428405-37428424 Msa0950000:intron 35.0%
! TTGAATTTGCTCATCCATTC+TGG + chr6_3:37428488-37428507 None:intergenic 35.0%
! AGCAAATTCAACTTTTCTCC+TGG - chr6_3:37428497-37428516 Msa0950000:CDS 35.0%
! GCAAATTCAACTTTTCTCCT+GGG - chr6_3:37428498-37428517 Msa0950000:CDS 35.0%
! AAGGATTTTCTAACAAAGCG+CGG - chr6_3:37428584-37428603 Msa0950000:CDS 35.0%
! AACAAGAGCATGTATCAAAC+AGG + chr6_3:37428766-37428785 None:intergenic 35.0%
!! GTTGCTTCTTTGAAACATAC+AGG - chr6_3:37428837-37428856 Msa0950000:five_prime_UTR 35.0%
TGACATAACTGGTGTAAACA+TGG + chr6_3:37428929-37428948 None:intergenic 35.0%
GATTGAAGTTTGCGCAAGAA+AGG - chr6_3:37423204-37423223 Msa0950000:three_prime_UTR 40.0%
AGTTTGCGCAAGAAAGGAAT+CGG - chr6_3:37423210-37423229 Msa0950000:three_prime_UTR 40.0%
TCGATTTCGGAAGTGAGTAA+GGG + chr6_3:37423372-37423391 None:intergenic 40.0%
TTCGATTTCGGAAGTGAGTA+AGG + chr6_3:37423373-37423392 None:intergenic 40.0%
! CTTTTCCTTGCCGGAATAAA+TGG + chr6_3:37423479-37423498 None:intergenic 40.0%
CATTTATTCCGGCAAGGAAA+AGG - chr6_3:37423477-37423496 Msa0950000:three_prime_UTR 40.0%
TGTGGTGTTTAAATCAGCGT+TGG - chr6_3:37423506-37423525 Msa0950000:exon 40.0%
GTGGTGTTTAAATCAGCGTT+GGG - chr6_3:37423507-37423526 Msa0950000:exon 40.0%
GGTTTAATCCTAGGAATGGA+AGG - chr6_3:37423637-37423656 Msa0950000:CDS 40.0%
AAAACAGACCTTCCATTCCT+AGG + chr6_3:37423648-37423667 None:intergenic 40.0%
!! GGTGCTGTTGTTTATCTTGA+TGG - chr6_3:37423681-37423700 Msa0950000:CDS 40.0%
TTATCTTGATGGAGAACCCA+AGG - chr6_3:37423692-37423711 Msa0950000:CDS 40.0%
!! GTTGGTAATCTAGGGTTCAT+TGG - chr6_3:37423848-37423867 Msa0950000:intron 40.0%
! GTAATCTAGGGTTCATTGGT+TGG - chr6_3:37423852-37423871 Msa0950000:intron 40.0%
GAGTGGAACAATTCTTGATC+AGG + chr6_3:37423891-37423910 None:intergenic 40.0%
GATCAAGAATTGTTCCACTC+AGG - chr6_3:37423891-37423910 Msa0950000:intron 40.0%
AACCTACATTGATGTCCTGT+TGG - chr6_3:37424205-37424224 Msa0950000:intron 40.0%
TACCAACAGGACATCAATGT+AGG + chr6_3:37424210-37424229 None:intergenic 40.0%
CATTGATGTCCTGTTGGTAT+TGG - chr6_3:37424211-37424230 Msa0950000:intron 40.0%
TGTTGATGTCCAATACCAAC+AGG + chr6_3:37424223-37424242 None:intergenic 40.0%
!! CTTTAGGTTGAAGGTATGGT+TGG + chr6_3:37424257-37424276 None:intergenic 40.0%
AAATATGTCACCCTCTAACG+TGG - chr6_3:37424347-37424366 Msa0950000:intron 40.0%
AATATGTCACCCTCTAACGT+GGG - chr6_3:37424348-37424367 Msa0950000:intron 40.0%
CTCATAATGGTTCATAGCTC+AGG - chr6_3:37424573-37424592 Msa0950000:intron 40.0%
! CACTACAGCCAAGTAGATTT+TGG + chr6_3:37424742-37424761 None:intergenic 40.0%
TAGTGCTATAGTCGGTAGTT+TGG - chr6_3:37424757-37424776 Msa0950000:intron 40.0%
TAGACCAACAATCTAAGGGA+AGG - chr6_3:37424802-37424821 Msa0950000:intron 40.0%
!! CTGAAAAGCATTGGAGAAAG+GGG - chr6_3:37424896-37424915 Msa0950000:intron 40.0%
!! TGAAAAGCATTGGAGAAAGG+GGG - chr6_3:37424897-37424916 Msa0950000:intron 40.0%
!! TGAAAGGGCTTTTAAGGGAA+AGG - chr6_3:37424938-37424957 Msa0950000:intron 40.0%
GGAGTAATCACATAGGGTTA+AGG + chr6_3:37425123-37425142 None:intergenic 40.0%
AGCATGATCATGATAGTTGG+TGG - chr6_3:37425200-37425219 Msa0950000:intron 40.0%
! GCATCATAGTTTGTCTGGTA+AGG - chr6_3:37425374-37425393 Msa0950000:intron 40.0%
TTTCCATGATCGTGAGTTCT+TGG - chr6_3:37425549-37425568 Msa0950000:intron 40.0%
ATGATCGTGAGTTCTTGGAT+CGG - chr6_3:37425554-37425573 Msa0950000:intron 40.0%
! TGCTGGTTGGATTGTGTTTA+AGG - chr6_3:37425666-37425685 Msa0950000:intron 40.0%
GTATGATTGTAATCACAGGC+AGG + chr6_3:37425803-37425822 None:intergenic 40.0%
AACAAAGAAACCAGCACCAA+GGG + chr6_3:37425897-37425916 None:intergenic 40.0%
AAACAAAGAAACCAGCACCA+AGG + chr6_3:37425898-37425917 None:intergenic 40.0%
ACCACAAGAAACAGAGGAAA+TGG + chr6_3:37425947-37425966 None:intergenic 40.0%
CAAACCAAAGGCCACAATTT+AGG + chr6_3:37426063-37426082 None:intergenic 40.0%
!! CAACACAATGAAAGTGTTGG+AGG + chr6_3:37426098-37426117 None:intergenic 40.0%
CTCCAACACTTTCATTGTGT+TGG - chr6_3:37426096-37426115 Msa0950000:intron 40.0%
! AGCCAACACAATGAAAGTGT+TGG + chr6_3:37426101-37426120 None:intergenic 40.0%
!! CTTTCATTGTGTTGGCTTTG+AGG - chr6_3:37426104-37426123 Msa0950000:intron 40.0%
!! TTCATTGTGTTGGCTTTGAG+GGG - chr6_3:37426106-37426125 Msa0950000:intron 40.0%
CCTTACAAAAACGGCTTGTA+AGG + chr6_3:37426175-37426194 None:intergenic 40.0%
!!! CCTTACAAGCCGTTTTTGTA+AGG - chr6_3:37426172-37426191 Msa0950000:intron 40.0%
ACCCCTTTATAGGGATATCA+TGG + chr6_3:37426447-37426466 None:intergenic 40.0%
!! ACTGTTGACTCAAGATACAC+AGG + chr6_3:37426625-37426644 None:intergenic 40.0%
!! AATTGTTCCGGTGTTGTATG+TGG - chr6_3:37426727-37426746 Msa0950000:intron 40.0%
!! ATTGTTCCGGTGTTGTATGT+GGG - chr6_3:37426728-37426747 Msa0950000:intron 40.0%
GATAAACCCACATACAACAC+CGG + chr6_3:37426737-37426756 None:intergenic 40.0%
!! ACTTGATGCTTTTGAGGGAA+TGG + chr6_3:37426928-37426947 None:intergenic 40.0%
!!! AGGGTGTTTTTGGTTTTCTG+AGG - chr6_3:37427241-37427260 Msa0950000:intron 40.0%
CAAGGAATAGAGGCTACTAA+AGG + chr6_3:37427292-37427311 None:intergenic 40.0%
TTAGTAGCCTCTATTCCTTG+TGG - chr6_3:37427292-37427311 Msa0950000:intron 40.0%
ACAATCACCACAAGGAATAG+AGG + chr6_3:37427302-37427321 None:intergenic 40.0%
TCTATTCCTTGTGGTGATTG+TGG - chr6_3:37427301-37427320 Msa0950000:intron 40.0%
TATGTTAGTAGACCAACCCT+TGG - chr6_3:37427683-37427702 Msa0950000:intron 40.0%
TAAGCTCCACTTCAACTCTA+AGG - chr6_3:37427748-37427767 Msa0950000:intron 40.0%
AGAGATGAATTGATCAGGAC+CGG + chr6_3:37427796-37427815 None:intergenic 40.0%
ATGGGAGAGATGAATTGATC+AGG + chr6_3:37427801-37427820 None:intergenic 40.0%
GATCAATTCATCTCTCCCAT+AGG - chr6_3:37427801-37427820 Msa0950000:intron 40.0%
TGGCCCATTAAATAGCAATC+GGG - chr6_3:37427853-37427872 Msa0950000:intron 40.0%
! GTAACACGTTTTGCTGCATA+AGG - chr6_3:37427898-37427917 Msa0950000:intron 40.0%
GATGAACTTCAAGAGGTCTT+TGG + chr6_3:37427929-37427948 None:intergenic 40.0%
GCAGAGTTTACAAGGAAGTT+TGG + chr6_3:37427981-37428000 None:intergenic 40.0%
GACAACAAGCAGAGTTTACA+AGG + chr6_3:37427989-37428008 None:intergenic 40.0%
TACCAACTTTCTCAAAAGCC+TGG - chr6_3:37428215-37428234 Msa0950000:intron 40.0%
ACCAACTTTCTCAAAAGCCT+GGG - chr6_3:37428216-37428235 Msa0950000:intron 40.0%
GCAGTAGCAAGTTGTGTAAT+TGG - chr6_3:37428284-37428303 Msa0950000:intron 40.0%
CCAATCAAGATCCTGGTAAT+CGG + chr6_3:37428419-37428438 None:intergenic 40.0%
CGATTACCAGGATCTTGATT+GGG - chr6_3:37428417-37428436 Msa0950000:CDS 40.0%
GATTACCAGGATCTTGATTG+GGG - chr6_3:37428418-37428437 Msa0950000:CDS 40.0%
CTTTGTTCTCTTTCTCATGC+GGG + chr6_3:37428567-37428586 None:intergenic 40.0%
CCTTTGTTCTCTTTCTCATG+CGG + chr6_3:37428568-37428587 None:intergenic 40.0%
! ATTTTCTAACAAAGCGCGGT+TGG - chr6_3:37428588-37428607 Msa0950000:CDS 40.0%
GCTCTTGTTCAACAGAGTAA+AGG - chr6_3:37428777-37428796 Msa0950000:exon 40.0%
AACAAGACACAGTGACAGAG+TGG - chr6_3:37423282-37423301 Msa0950000:three_prime_UTR 45.0%
CTTTGTTCGGACATGCTTTG+CGG + chr6_3:37423439-37423458 None:intergenic 45.0%
CTACTTCCGGTACCTTTGTT+CGG + chr6_3:37423452-37423471 None:intergenic 45.0%
GAGATCCATTTATTCCGGCA+AGG - chr6_3:37423471-37423490 Msa0950000:three_prime_UTR 45.0%
! GTGTTTAAATCAGCGTTGGG+AGG - chr6_3:37423510-37423529 Msa0950000:CDS 45.0%
! TTAAATCAGCGTTGGGAGGT+TGG - chr6_3:37423514-37423533 Msa0950000:CDS 45.0%
! TAAATCAGCGTTGGGAGGTT+GGG - chr6_3:37423515-37423534 Msa0950000:CDS 45.0%
AATCATCAGACACGTGTTCG+TGG - chr6_3:37423603-37423622 Msa0950000:CDS 45.0%
AGAGAACACAAGTTCCTGAG+TGG + chr6_3:37423908-37423927 None:intergenic 45.0%
CTACTGTGCTACGACACTAT+AGG - chr6_3:37424660-37424679 Msa0950000:intron 45.0%
CTTGGCTGTAGTGCTATAGT+CGG - chr6_3:37424749-37424768 Msa0950000:intron 45.0%
AGCTCCTTCCCTTAGATTGT+TGG + chr6_3:37424809-37424828 None:intergenic 45.0%
CTAAGGGAAGGAGCTAGAAT+CGG - chr6_3:37424814-37424833 Msa0950000:intron 45.0%
TAAGGGAAGGAGCTAGAATC+GGG - chr6_3:37424815-37424834 Msa0950000:intron 45.0%
GAAGTCTGTTAGGAGGGAAA+TGG - chr6_3:37424849-37424868 Msa0950000:intron 45.0%
TCTGTTAGGAGGGAAATGGA+AGG - chr6_3:37424853-37424872 Msa0950000:intron 45.0%
CTGTTAGGAGGGAAATGGAA+GGG - chr6_3:37424854-37424873 Msa0950000:intron 45.0%
! GGCAGTGAAAGGGCTTTTAA+GGG - chr6_3:37424933-37424952 Msa0950000:intron 45.0%
!! AGGGCTTTTAAGGGAAAGGA+TGG - chr6_3:37424942-37424961 Msa0950000:intron 45.0%
!! GCTTTTAAGGGAAAGGATGG+CGG - chr6_3:37424945-37424964 Msa0950000:intron 45.0%
ACGTTTGTAGGATCGTGAGT+TGG - chr6_3:37425476-37425495 Msa0950000:intron 45.0%
CGTTTGTAGGATCGTGAGTT+GGG - chr6_3:37425477-37425496 Msa0950000:intron 45.0%
GATCCAAGAACTCACGATCA+TGG + chr6_3:37425555-37425574 None:intergenic 45.0%
! CATTCACTGTATGATGGAGG+CGG + chr6_3:37425835-37425854 None:intergenic 45.0%
TCGCATTCACTGTATGATGG+AGG + chr6_3:37425838-37425857 None:intergenic 45.0%
CTGTCGCATTCACTGTATGA+TGG + chr6_3:37425841-37425860 None:intergenic 45.0%
GGAAATGGCACAAGAAACAG+AGG + chr6_3:37425932-37425951 None:intergenic 45.0%
! GCCATTTCCTCTGTTTCTTG+TGG - chr6_3:37425943-37425962 Msa0950000:intron 45.0%
AAGCACACCACAAGAAACAG+AGG + chr6_3:37425953-37425972 None:intergenic 45.0%
TGTGGTGTGCTTCCTGTTTA+TGG - chr6_3:37425961-37425980 Msa0950000:intron 45.0%
TCCTGTTTATGGCCTCAAAC+TGG - chr6_3:37425972-37425991 Msa0950000:intron 45.0%
CCTGTTTATGGCCTCAAACT+GGG - chr6_3:37425973-37425992 Msa0950000:intron 45.0%
CTGTTTATGGCCTCAAACTG+GGG - chr6_3:37425974-37425993 Msa0950000:intron 45.0%
ACAATTTAGGCAACTAGGGG+CGG + chr6_3:37426050-37426069 None:intergenic 45.0%
GCCACAATTTAGGCAACTAG+GGG + chr6_3:37426053-37426072 None:intergenic 45.0%
GGCCACAATTTAGGCAACTA+GGG + chr6_3:37426054-37426073 None:intergenic 45.0%
AGGCCACAATTTAGGCAACT+AGG + chr6_3:37426055-37426074 None:intergenic 45.0%
GTTGCCTAAATTGTGGCCTT+TGG - chr6_3:37426056-37426075 Msa0950000:intron 45.0%
CTGCAATGAAGGCAAACCAA+AGG + chr6_3:37426075-37426094 None:intergenic 45.0%
!! TCATTGTGTTGGCTTTGAGG+GGG - chr6_3:37426107-37426126 Msa0950000:intron 45.0%
CTTCATGTCAGCATGCAAAG+TGG - chr6_3:37427091-37427110 Msa0950000:intron 45.0%
!! AGGGGGCCAAGGTTTATTTT+AGG + chr6_3:37427201-37427220 None:intergenic 45.0%
ATTCCTTGTGGTGATTGTGG+TGG - chr6_3:37427304-37427323 Msa0950000:intron 45.0%
ATTCCACCACAATCACCACA+AGG + chr6_3:37427310-37427329 None:intergenic 45.0%
! TTCTCTTTGACTAGCCAGCT+TGG - chr6_3:37427329-37427348 Msa0950000:intron 45.0%
!! GTTTAGTGGATTCTCCAAGC+TGG + chr6_3:37427346-37427365 None:intergenic 45.0%
! GGTGTTGTGCTTATGTGTAG+TGG + chr6_3:37427399-37427418 None:intergenic 45.0%
TGATGCTTCGGGTAAATGAG+TGG + chr6_3:37427420-37427439 None:intergenic 45.0%
AACAGGAAATCACCAAGGGT+TGG + chr6_3:37427698-37427717 None:intergenic 45.0%
GTCGAACAGGAAATCACCAA+GGG + chr6_3:37427702-37427721 None:intergenic 45.0%
TGTCGAACAGGAAATCACCA+AGG + chr6_3:37427703-37427722 None:intergenic 45.0%
GGTGATTTCCTGTTCGACAT+TGG - chr6_3:37427704-37427723 Msa0950000:intron 45.0%
GCTACTTACCAATGTCGAAC+AGG + chr6_3:37427715-37427734 None:intergenic 45.0%
AATGGGCCTTAGAGTTGAAG+TGG + chr6_3:37427757-37427776 None:intergenic 45.0%
CAGCAAAACGTGTTACAACC+AGG + chr6_3:37427894-37427913 None:intergenic 45.0%
AACAATGCCACTCAAGAGGA+TGG + chr6_3:37427956-37427975 None:intergenic 45.0%
CCAACTTTCTCAAAAGCCTG+GGG - chr6_3:37428217-37428236 Msa0950000:intron 45.0%
CCGATTACCAGGATCTTGAT+TGG - chr6_3:37428416-37428435 Msa0950000:CDS 45.0%
TTTCGAGGGAAAGTCCAGAA+TGG - chr6_3:37428471-37428490 Msa0950000:CDS 45.0%
CCGCATGAGAAAGAGAACAA+AGG - chr6_3:37428565-37428584 Msa0950000:CDS 45.0%
!!! TTTTGTAAAAAAAATAAAAA+AGG - chr6_3:37425626-37425645 Msa0950000:intron 5.0%
!!! AAATTTTTTTAAAAAAAACA+GGG + chr6_3:37425696-37425715 None:intergenic 5.0%
!!! TAAATTTTTTTAAAAAAAAC+AGG + chr6_3:37425697-37425716 None:intergenic 5.0%
GAAGAAATCACCACCGCAAC+CGG - chr6_3:37423399-37423418 Msa0950000:three_prime_UTR 50.0%
CGCAAAGCATGTCCGAACAA+AGG - chr6_3:37423437-37423456 Msa0950000:three_prime_UTR 50.0%
! GCATGTCCGAACAAAGGTAC+CGG - chr6_3:37423443-37423462 Msa0950000:three_prime_UTR 50.0%
! CAATCGGTCCTTTTCCTTGC+CGG + chr6_3:37423488-37423507 None:intergenic 50.0%
GCAAGGAAAAGGACCGATTG+TGG - chr6_3:37423488-37423507 Msa0950000:three_prime_UTR 50.0%
TTGGGAACAGGATCAGCTTG+AGG - chr6_3:37423533-37423552 Msa0950000:CDS 50.0%
GAACAGGATCAGCTTGAGGT+TGG - chr6_3:37423537-37423556 Msa0950000:CDS 50.0%
GTGTTCGTGGTGTTCCTGTT+AGG - chr6_3:37423616-37423635 Msa0950000:CDS 50.0%
! AGCTAGAATCGGGTTGTGTC+TGG - chr6_3:37424825-37424844 Msa0950000:intron 50.0%
TGTGTCTGGCGAAGTCTGTT+AGG - chr6_3:37424839-37424858 Msa0950000:intron 50.0%
TCTGGCGAAGTCTGTTAGGA+GGG - chr6_3:37424843-37424862 Msa0950000:intron 50.0%
! GGGCAGTGAAAGGGCTTTTA+AGG - chr6_3:37424932-37424951 Msa0950000:intron 50.0%
AAGAGTGGTTGCAATCGACG+AGG + chr6_3:37425253-37425272 None:intergenic 50.0%
! TAGGATCGTGAGTTGGGTCA+TGG - chr6_3:37425483-37425502 Msa0950000:intron 50.0%
! AGGATCGTGAGTTGGGTCAT+GGG - chr6_3:37425484-37425503 Msa0950000:intron 50.0%
ATCATGTGGTGTGCTTCCCT+TGG - chr6_3:37425878-37425897 Msa0950000:intron 50.0%
! CCCAGTTTGAGGCCATAAAC+AGG + chr6_3:37425976-37425995 None:intergenic 50.0%
ATGATAGGAGCCCCAGTTTG+AGG + chr6_3:37425987-37426006 None:intergenic 50.0%
GCCCCTAGTTGCCTAAATTG+TGG - chr6_3:37426049-37426068 Msa0950000:intron 50.0%
! AGTGTTGGAGGCTGCAATGA+AGG + chr6_3:37426086-37426105 None:intergenic 50.0%
TGCAAAGTGGTCTCCGTATC+AGG - chr6_3:37427104-37427123 Msa0950000:intron 50.0%
TACACTGCCGCATTAGTGGA+GGG + chr6_3:37427268-37427287 None:intergenic 50.0%
CTGTTACTGTCACGCTATGC+TGG + chr6_3:37427481-37427500 None:intergenic 50.0%
TGGCGTGGATGAACTTCAAG+AGG + chr6_3:37427936-37427955 None:intergenic 50.0%
TGGTTCCTCGTCACGAGTAT+AGG - chr6_3:37428143-37428162 Msa0950000:intron 50.0%
!! CCCCAGGCTTTTGAGAAAGT+TGG + chr6_3:37428220-37428239 None:intergenic 50.0%
TGCTACCCCAATCAAGATCC+TGG + chr6_3:37428426-37428445 None:intergenic 50.0%
TCCTGGGAACTTCTCTCCAT+GGG - chr6_3:37428514-37428533 Msa0950000:CDS 50.0%
GAACTTCTCTCCATGGGTCT+TGG - chr6_3:37428520-37428539 Msa0950000:CDS 50.0%
GTCTGGCGAAGTCTGTTAGG+AGG - chr6_3:37424842-37424861 Msa0950000:intron 55.0%
GCATTGGAGAAAGGGGGTTC+AGG - chr6_3:37424903-37424922 Msa0950000:intron 55.0%
! AAAGGGGGTTCAGGAAGCGT+GGG - chr6_3:37424912-37424931 Msa0950000:intron 55.0%
! AGGAAGCGTGGGCAGTGAAA+GGG - chr6_3:37424923-37424942 Msa0950000:intron 55.0%
! AGGATGGCGGCTAAAGCTGT+AGG - chr6_3:37424958-37424977 Msa0950000:intron 55.0%
! GGATGGCGGCTAAAGCTGTA+GGG - chr6_3:37424959-37424978 Msa0950000:intron 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG - chr6_3:37426110-37426129 Msa0950000:intron 55.0%
CTGAGGTCCCTCCACTAATG+CGG - chr6_3:37427258-37427277 Msa0950000:intron 55.0%
CTACACTGCCGCATTAGTGG+AGG + chr6_3:37427269-37427288 None:intergenic 55.0%
AGGCTACACTGCCGCATTAG+TGG + chr6_3:37427272-37427291 None:intergenic 55.0%
GGGACTTCAGCTTCTTCACC+TGG - chr6_3:37427873-37427892 Msa0950000:intron 55.0%
ATCCACGCCATCCTCTTGAG+TGG - chr6_3:37427946-37427965 Msa0950000:intron 55.0%
GGGCAACAATGCCACTCAAG+AGG + chr6_3:37427960-37427979 None:intergenic 55.0%
CTCCTGGGAACTTCTCTCCA+TGG - chr6_3:37428513-37428532 Msa0950000:CDS 55.0%
ACCCATGGAGAGAAGTTCCC+AGG + chr6_3:37428518-37428537 None:intergenic 55.0%
ACTACGCAAGCCAAGACCCA+TGG + chr6_3:37428533-37428552 None:intergenic 55.0%
ACCACCGCAACCGGTAACGA+CGG - chr6_3:37423408-37423427 Msa0950000:three_prime_UTR 60.0%
! AGCGTTGGGAGGTTGGGAAC+AGG - chr6_3:37423521-37423540 Msa0950000:CDS 60.0%
GAAAGGGGGTTCAGGAAGCG+TGG - chr6_3:37424911-37424930 Msa0950000:intron 60.0%
! CAGGAAGCGTGGGCAGTGAA+AGG - chr6_3:37424922-37424941 Msa0950000:intron 60.0%
! CTGTATGATGGAGGCGGCGA+CGG + chr6_3:37425829-37425848 None:intergenic 60.0%
! TGGTGTGCTTCCCTTGGTGC+TGG - chr6_3:37425884-37425903 Msa0950000:intron 60.0%
CTAGGGGCGGACCGCAATAA+AGG + chr6_3:37426037-37426056 None:intergenic 60.0%
AACTGTTGCAGAGGGGGCCA+AGG + chr6_3:37427212-37427231 None:intergenic 60.0%
TGCCACTCAAGAGGATGGCG+TGG + chr6_3:37427951-37427970 None:intergenic 60.0%
! GTCGCCGTCGTTACCGGTTG+CGG + chr6_3:37423415-37423434 None:intergenic 65.0%
!! TGCGGTGTCGCCGTCGTTAC+CGG + chr6_3:37423421-37423440 None:intergenic 65.0%
! GCCGTCGTTACCGGTTGCGG+TGG + chr6_3:37423412-37423431 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 37423169 37428954 37423169 ID=Msa0950000;Name=Msa0950000
chr6_3 mRNA 37423169 37428954 37423169 ID=Msa0950000-mRNA-1;Parent=Msa0950000;Name=Msa0950000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=176|1|1|1|0|1|2|341|193
chr6_3 exon 37423169 37423722 37423169 ID=Msa0950000-mRNA-1:exon:9192;Parent=Msa0950000-mRNA-1
chr6_3 exon 37428410 37428954 37428410 ID=Msa0950000-mRNA-1:exon:9191;Parent=Msa0950000-mRNA-1
chr6_3 five_prime_UTR 37428779 37428954 37428779 ID=Msa0950000-mRNA-1:five_prime_utr;Parent=Msa0950000-mRNA-1
chr6_3 CDS 37428410 37428778 37428410 ID=Msa0950000-mRNA-1:cds;Parent=Msa0950000-mRNA-1
chr6_3 CDS 37423510 37423722 37423510 ID=Msa0950000-mRNA-1:cds;Parent=Msa0950000-mRNA-1
chr6_3 three_prime_UTR 37423169 37423509 37423169 ID=Msa0950000-mRNA-1:three_prime_utr;Parent=Msa0950000-mRNA-1
Gene Sequence

>Msa0950000

ATGGTTAACGAAAACGAAAACTCACCCTTACTCACTTCCGAAATCGAAGAAGAAGAAGAAATCACCACCGCAACCGGTAACGACGGCGACACCGCAAAGCATGTCCGAACAAAGGTACCGGAAGTAGAGATCCATTTATTCCGGCAAGGAAAAGGACCGATTGTGGTGTTTAAATCAGCGTTGGGAGGTTGGGAACAGGATCAGCTTGAGGTTGGTGATATTCTTGAGAAACATGGATTGAAAACTGTGTTTGCGTTTAATCATCAGACACGTGTTCGTGGTGTTCCTGTTAGGTTTAATCCTAGGAATGGAAGGTCTGTTTTGACTTATAGGGATGGTGCTGTTGTTTATCTTGATGGAGAACCCAAGGACTCACTAATTAAACCGATTACCAGGATCTTGATTGGGGTAGCAGTAATAACCCTAATGATAGTAATAGTTTCGAGGGAAAGTCCAGAATGGATGAGCAAATTCAACTTTTCTCCTGGGAACTTCTCTCCATGGGTCTTGGCTTGCGTAGTTATTGTCTTCACCCGCATGAGAAAGAGAACAAAGGATTTTCTAACAAAGCGCGGTTGGTGA
Protein sequence

>Msa0950000

MVNENENSPLLTSEIEEEEEITTATGNDGDTAKHVRTKVPEVEIHLFRQGKGPIVVFKSALGGWEQDQLEVGDILEKHGLKTVFAFNHQTRVRGVPVRFNPRNGRSVLTYRDGAVVYLDGEPKDSLIKPITRILIGVAVITLMIVIVSRESPEWMSKFNFSPGNFSPWVLACVVIVFTRMRKRTKDFLTKRGW*